Query 005908
Match_columns 670
No_of_seqs 742 out of 5140
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 15:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 8E-92 1.7E-96 724.5 48.0 614 4-636 1-622 (625)
2 COG1160 Predicted GTPases [Gen 100.0 6.4E-42 1.4E-46 350.4 30.4 329 13-598 4-360 (444)
3 PRK03003 GTP-binding protein D 100.0 4.1E-39 9E-44 351.6 35.8 329 11-597 37-390 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 4.3E-36 9.4E-41 327.0 34.3 326 14-597 1-352 (429)
5 PRK09518 bifunctional cytidyla 100.0 1.7E-35 3.7E-40 337.7 35.6 333 10-598 273-630 (712)
6 PRK00093 GTP-binding protein D 100.0 4.1E-35 8.8E-40 319.6 34.0 325 13-596 2-351 (435)
7 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.9E-31 6.3E-36 240.1 17.2 170 420-594 6-177 (205)
8 KOG0092 GTPase Rab5/YPT51 and 100.0 1.3E-29 2.9E-34 228.5 15.8 166 422-593 4-171 (200)
9 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.2E-29 4.7E-34 228.0 15.2 169 8-180 5-176 (205)
10 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-29 3.6E-34 227.9 14.2 166 10-180 3-171 (200)
11 KOG0078 GTP-binding protein SE 100.0 6.5E-29 1.4E-33 228.9 17.9 166 419-590 8-175 (207)
12 KOG0098 GTPase Rab2, small G p 100.0 1.7E-28 3.7E-33 218.8 15.9 163 421-589 4-168 (216)
13 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.2E-28 4.8E-33 220.0 16.8 167 421-592 20-188 (221)
14 KOG0080 GTPase Rab18, small G 100.0 1.4E-28 3E-33 213.1 14.7 165 421-590 9-175 (209)
15 KOG0078 GTP-binding protein SE 100.0 3E-28 6.6E-33 224.5 16.9 172 2-178 2-176 (207)
16 KOG0080 GTPase Rab18, small G 100.0 1.7E-28 3.7E-33 212.5 13.4 168 7-179 6-177 (209)
17 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.4E-28 5.3E-33 219.8 14.5 167 9-180 19-189 (221)
18 KOG0394 Ras-related GTPase [Ge 100.0 4E-28 8.7E-33 216.1 14.9 168 421-590 7-179 (210)
19 KOG0079 GTP-binding protein H- 100.0 3.8E-28 8.1E-33 207.3 13.2 162 422-590 7-170 (198)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.8E-27 4E-32 226.6 18.1 164 10-176 3-180 (182)
21 KOG0098 GTPase Rab2, small G p 100.0 8.2E-28 1.8E-32 214.5 14.4 164 9-177 3-169 (216)
22 cd04133 Rop_like Rop subfamily 100.0 2.2E-27 4.9E-32 224.5 18.2 163 13-178 2-175 (176)
23 cd01875 RhoG RhoG subfamily. 99.9 6E-27 1.3E-31 225.8 18.2 168 11-179 2-180 (191)
24 cd04131 Rnd Rnd subfamily. Th 99.9 5.5E-27 1.2E-31 222.9 17.3 162 12-176 1-176 (178)
25 cd04121 Rab40 Rab40 subfamily. 99.9 1.1E-26 2.5E-31 222.2 19.2 164 10-178 4-169 (189)
26 KOG0394 Ras-related GTPase [Ge 99.9 1.8E-27 3.9E-32 211.9 12.4 170 6-179 3-181 (210)
27 cd04121 Rab40 Rab40 subfamily. 99.9 2.3E-26 5E-31 220.1 20.4 171 421-598 4-176 (189)
28 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.6E-26 3.6E-31 226.8 18.9 167 9-178 10-190 (232)
29 KOG0087 GTPase Rab11/YPT3, sma 99.9 8.5E-27 1.8E-31 213.3 15.3 165 419-589 10-176 (222)
30 cd04120 Rab12 Rab12 subfamily. 99.9 1.9E-26 4.2E-31 222.7 18.7 162 13-178 1-165 (202)
31 KOG0093 GTPase Rab3, small G p 99.9 9E-27 1.9E-31 198.8 14.2 165 420-590 18-184 (193)
32 cd01874 Cdc42 Cdc42 subfamily. 99.9 2E-26 4.4E-31 218.8 17.8 160 13-175 2-174 (175)
33 cd04133 Rop_like Rop subfamily 99.9 3.2E-26 6.9E-31 216.7 18.2 161 424-591 2-175 (176)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 5.1E-26 1.1E-30 222.2 19.1 169 12-181 1-181 (222)
35 cd04120 Rab12 Rab12 subfamily. 99.9 6.7E-26 1.5E-30 218.9 19.2 161 424-590 1-164 (202)
36 KOG0079 GTP-binding protein H- 99.9 7.4E-27 1.6E-31 199.4 10.9 161 12-177 8-170 (198)
37 KOG0091 GTPase Rab39, small G 99.9 2.4E-26 5.1E-31 199.9 13.6 165 421-589 6-173 (213)
38 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 9.6E-26 2.1E-30 214.8 18.7 162 421-589 3-180 (182)
39 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 8.5E-26 1.8E-30 214.0 17.9 162 12-178 2-166 (172)
40 cd04143 Rhes_like Rhes_like su 99.9 7.8E-26 1.7E-30 225.4 18.3 222 424-668 1-230 (247)
41 cd01871 Rac1_like Rac1-like su 99.9 1E-25 2.2E-30 213.8 17.4 160 12-174 1-173 (174)
42 cd01893 Miro1 Miro1 subfamily. 99.9 2.7E-25 5.8E-30 209.6 19.0 165 13-177 1-165 (166)
43 KOG0086 GTPase Rab4, small G p 99.9 9E-26 2E-30 193.7 13.8 165 420-590 6-172 (214)
44 cd04134 Rho3 Rho3 subfamily. 99.9 2.2E-25 4.7E-30 214.7 17.8 167 13-180 1-178 (189)
45 KOG0095 GTPase Rab30, small G 99.9 1.4E-25 3.1E-30 191.7 14.4 163 421-589 5-169 (213)
46 cd04131 Rnd Rnd subfamily. Th 99.9 3E-25 6.4E-30 211.0 18.2 158 424-588 2-175 (178)
47 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.1E-25 8.8E-30 216.9 19.7 163 422-591 12-190 (232)
48 cd04122 Rab14 Rab14 subfamily. 99.9 3.6E-25 7.7E-30 208.8 18.2 160 12-176 2-164 (166)
49 KOG0093 GTPase Rab3, small G p 99.9 1.3E-25 2.7E-30 191.8 12.8 162 12-178 21-185 (193)
50 cd04122 Rab14 Rab14 subfamily. 99.9 8.2E-25 1.8E-29 206.3 19.8 161 423-589 2-164 (166)
51 KOG0087 GTPase Rab11/YPT3, sma 99.9 2E-25 4.4E-30 204.3 14.8 166 7-177 9-177 (222)
52 cd04136 Rap_like Rap-like subf 99.9 4.6E-25 9.9E-30 207.3 17.8 159 12-175 1-162 (163)
53 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 7.5E-25 1.6E-29 213.2 19.2 166 424-591 1-170 (201)
54 PLN03071 GTP-binding nuclear p 99.9 1.7E-24 3.7E-29 212.9 21.8 162 10-178 11-174 (219)
55 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.1E-24 2.4E-29 206.4 19.5 162 423-590 2-165 (172)
56 cd01875 RhoG RhoG subfamily. 99.9 8.1E-25 1.8E-29 210.9 18.8 162 423-591 3-179 (191)
57 cd01867 Rab8_Rab10_Rab13_like 99.9 1.4E-24 3E-29 204.9 20.0 162 422-589 2-165 (167)
58 cd04126 Rab20 Rab20 subfamily. 99.9 8.8E-25 1.9E-29 213.5 18.9 159 13-176 1-190 (220)
59 cd04175 Rap1 Rap1 subgroup. T 99.9 8.5E-25 1.8E-29 205.8 17.9 159 12-175 1-162 (164)
60 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-24 2.5E-29 207.8 18.7 162 424-592 1-169 (182)
61 smart00174 RHO Rho (Ras homolo 99.9 6.5E-25 1.4E-29 208.7 16.6 160 15-177 1-173 (174)
62 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1E-24 2.2E-29 212.4 18.1 162 13-178 1-170 (201)
63 PTZ00369 Ras-like protein; Pro 99.9 1E-24 2.2E-29 210.2 17.8 164 10-178 3-169 (189)
64 cd01865 Rab3 Rab3 subfamily. 99.9 2.3E-24 5E-29 203.0 19.9 160 424-589 2-163 (165)
65 cd01892 Miro2 Miro2 subfamily. 99.9 1.4E-24 3.1E-29 205.1 18.2 164 421-591 2-168 (169)
66 cd04140 ARHI_like ARHI subfami 99.9 1.3E-24 2.9E-29 204.6 17.9 157 12-173 1-162 (165)
67 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-24 2.4E-29 210.1 17.2 161 14-179 1-166 (190)
68 cd04117 Rab15 Rab15 subfamily. 99.9 2.5E-24 5.4E-29 201.8 18.7 158 424-587 1-160 (161)
69 cd01865 Rab3 Rab3 subfamily. 99.9 2.1E-24 4.5E-29 203.4 18.1 159 13-176 2-163 (165)
70 cd04117 Rab15 Rab15 subfamily. 99.9 1.8E-24 3.9E-29 202.8 17.5 157 13-174 1-160 (161)
71 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.9E-24 4.2E-29 205.2 17.9 158 424-588 2-174 (175)
72 cd01867 Rab8_Rab10_Rab13_like 99.9 2.3E-24 5.1E-29 203.4 18.3 161 11-176 2-165 (167)
73 cd04103 Centaurin_gamma Centau 99.9 1.5E-24 3.3E-29 202.1 16.7 153 13-174 1-157 (158)
74 cd04176 Rap2 Rap2 subgroup. T 99.9 2.2E-24 4.8E-29 202.7 17.8 159 12-175 1-162 (163)
75 cd04109 Rab28 Rab28 subfamily. 99.9 4.3E-24 9.4E-29 210.0 20.6 165 424-591 1-168 (215)
76 KOG0095 GTPase Rab30, small G 99.9 3.4E-25 7.3E-30 189.4 11.0 162 10-176 5-169 (213)
77 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.4E-24 9.5E-29 201.3 19.9 161 423-589 2-164 (166)
78 cd04136 Rap_like Rap-like subf 99.9 2.6E-24 5.6E-29 202.2 18.2 159 424-588 2-162 (163)
79 cd04127 Rab27A Rab27a subfamil 99.9 4.7E-24 1E-28 204.0 20.2 163 422-589 3-177 (180)
80 cd04119 RJL RJL (RabJ-Like) su 99.9 4.2E-24 9E-29 201.6 19.6 163 424-589 1-167 (168)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.5E-24 7.6E-29 200.9 18.9 159 424-588 2-161 (162)
82 cd04116 Rab9 Rab9 subfamily. 99.9 4.9E-24 1.1E-28 201.8 19.9 164 422-587 4-169 (170)
83 cd04127 Rab27A Rab27a subfamil 99.9 2.1E-24 4.5E-29 206.4 17.5 161 11-176 3-177 (180)
84 KOG0088 GTPase Rab21, small G 99.9 2.1E-25 4.6E-30 192.7 9.1 170 4-178 5-177 (218)
85 cd01873 RhoBTB RhoBTB subfamil 99.9 2.6E-24 5.6E-29 207.2 17.7 157 12-174 2-194 (195)
86 cd04175 Rap1 Rap1 subgroup. T 99.9 3.6E-24 7.9E-29 201.5 18.4 161 423-589 1-163 (164)
87 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.7E-24 5.9E-29 205.3 17.7 160 13-177 1-167 (182)
88 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.4E-24 1.2E-28 201.2 19.5 160 425-589 2-165 (170)
89 cd01864 Rab19 Rab19 subfamily. 99.9 5.9E-24 1.3E-28 200.2 19.6 161 422-587 2-164 (165)
90 cd04111 Rab39 Rab39 subfamily. 99.9 5.8E-24 1.3E-28 208.0 19.8 164 423-591 2-168 (211)
91 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.3E-24 9.3E-29 201.4 18.3 160 12-176 2-164 (166)
92 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.4E-24 9.4E-29 200.8 18.3 160 11-175 1-163 (164)
93 cd04132 Rho4_like Rho4-like su 99.9 3.4E-24 7.3E-29 206.4 17.8 164 13-178 1-169 (187)
94 cd01868 Rab11_like Rab11-like. 99.9 7.4E-24 1.6E-28 199.5 19.8 161 422-588 2-164 (165)
95 cd04119 RJL RJL (RabJ-Like) su 99.9 4.1E-24 8.9E-29 201.7 18.0 159 13-176 1-167 (168)
96 PLN03071 GTP-binding nuclear p 99.9 4.7E-24 1E-28 209.8 19.0 162 421-590 11-173 (219)
97 cd00877 Ran Ran (Ras-related n 99.9 4.5E-24 9.7E-29 201.1 18.1 158 13-177 1-160 (166)
98 cd04124 RabL2 RabL2 subfamily. 99.9 4.3E-24 9.2E-29 200.3 17.7 157 13-177 1-159 (161)
99 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.4E-24 1.2E-28 199.6 18.3 158 12-175 1-161 (162)
100 smart00173 RAS Ras subfamily o 99.9 5E-24 1.1E-28 200.5 18.1 159 13-176 1-162 (164)
101 cd04110 Rab35 Rab35 subfamily. 99.9 8E-24 1.7E-28 205.5 19.8 164 421-591 4-169 (199)
102 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 8.5E-24 1.8E-28 206.6 19.8 162 424-592 2-179 (222)
103 KOG0091 GTPase Rab39, small G 99.9 2.5E-24 5.5E-29 187.2 13.9 162 10-176 6-173 (213)
104 KOG0083 GTPase Rab26/Rab37, sm 99.9 2.4E-25 5.1E-30 186.7 7.2 164 428-597 2-168 (192)
105 cd04110 Rab35 Rab35 subfamily. 99.9 7.5E-24 1.6E-28 205.7 18.9 163 11-178 5-169 (199)
106 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 6E-24 1.3E-28 200.9 17.7 160 14-176 2-165 (170)
107 KOG0088 GTPase Rab21, small G 99.9 8.8E-25 1.9E-29 188.8 10.8 163 420-588 10-174 (218)
108 cd04106 Rab23_lke Rab23-like s 99.9 5E-24 1.1E-28 200.0 17.1 157 13-174 1-161 (162)
109 cd04109 Rab28 Rab28 subfamily. 99.9 5.9E-24 1.3E-28 209.0 17.8 161 13-178 1-168 (215)
110 cd01871 Rac1_like Rac1-like su 99.9 8.6E-24 1.9E-28 200.6 18.1 157 424-587 2-173 (174)
111 cd04135 Tc10 TC10 subfamily. 99.9 6.2E-24 1.3E-28 202.0 17.0 160 13-175 1-173 (174)
112 cd00877 Ran Ran (Ras-related n 99.9 1E-23 2.2E-28 198.6 18.1 159 424-590 1-160 (166)
113 PF00071 Ras: Ras family; Int 99.9 5.2E-24 1.1E-28 199.9 16.0 158 14-176 1-161 (162)
114 cd04112 Rab26 Rab26 subfamily. 99.9 1.8E-23 4E-28 201.7 20.1 167 424-596 1-170 (191)
115 cd04176 Rap2 Rap2 subgroup. T 99.9 1E-23 2.3E-28 198.1 17.9 159 424-588 2-162 (163)
116 cd01864 Rab19 Rab19 subfamily. 99.9 9.3E-24 2E-28 198.9 17.5 160 11-174 2-164 (165)
117 PTZ00369 Ras-like protein; Pro 99.9 1.2E-23 2.6E-28 202.7 18.7 163 422-590 4-168 (189)
118 cd04124 RabL2 RabL2 subfamily. 99.9 1.5E-23 3.2E-28 196.6 18.8 159 424-591 1-160 (161)
119 cd01866 Rab2 Rab2 subfamily. 99.9 2.2E-23 4.7E-28 197.0 20.1 162 422-589 3-166 (168)
120 cd04142 RRP22 RRP22 subfamily. 99.9 2E-23 4.3E-28 201.8 20.0 170 424-594 1-179 (198)
121 PLN03110 Rab GTPase; Provision 99.9 1.3E-23 2.8E-28 206.4 19.0 172 1-177 1-175 (216)
122 cd04134 Rho3 Rho3 subfamily. 99.9 1.3E-23 2.8E-28 202.3 18.6 162 425-593 2-178 (189)
123 cd04112 Rab26 Rab26 subfamily. 99.9 1.2E-23 2.7E-28 202.9 18.4 162 13-179 1-166 (191)
124 cd04144 Ras2 Ras2 subfamily. 99.9 1.3E-23 2.9E-28 202.5 18.4 162 425-590 1-164 (190)
125 cd01868 Rab11_like Rab11-like. 99.9 1.3E-23 2.8E-28 197.9 17.9 159 12-175 3-164 (165)
126 cd04142 RRP22 RRP22 subfamily. 99.9 1.4E-23 3E-28 202.9 18.4 164 13-180 1-178 (198)
127 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-23 3.4E-28 198.0 18.4 160 12-176 4-166 (168)
128 cd04130 Wrch_1 Wrch-1 subfamil 99.9 7.8E-24 1.7E-28 201.1 16.4 158 13-173 1-171 (173)
129 PF08356 EF_assoc_2: EF hand a 99.9 7.1E-25 1.5E-29 175.3 7.7 89 227-315 1-89 (89)
130 KOG0086 GTPase Rab4, small G p 99.9 4.2E-24 9.1E-29 183.5 12.6 168 6-178 3-173 (214)
131 cd04125 RabA_like RabA-like su 99.9 2.4E-23 5.1E-28 200.6 19.4 162 424-591 1-164 (188)
132 smart00173 RAS Ras subfamily o 99.9 1.9E-23 4.1E-28 196.5 18.4 160 424-589 1-162 (164)
133 KOG0393 Ras-related small GTPa 99.9 1.2E-24 2.7E-29 202.0 9.8 169 10-180 2-183 (198)
134 cd04106 Rab23_lke Rab23-like s 99.9 2.9E-23 6.2E-28 194.8 19.0 157 424-587 1-161 (162)
135 cd04113 Rab4 Rab4 subfamily. 99.9 1.6E-23 3.4E-28 196.4 17.0 157 13-174 1-160 (161)
136 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3E-23 6.6E-28 195.1 19.0 160 423-588 2-163 (164)
137 cd04140 ARHI_like ARHI subfami 99.9 3E-23 6.5E-28 195.4 18.7 160 424-587 2-163 (165)
138 cd04116 Rab9 Rab9 subfamily. 99.9 2E-23 4.4E-28 197.6 17.5 160 10-174 3-169 (170)
139 cd04143 Rhes_like Rhes_like su 99.9 2.5E-23 5.4E-28 207.4 18.9 163 13-179 1-174 (247)
140 smart00176 RAN Ran (Ras-relate 99.9 1.7E-23 3.6E-28 201.9 16.9 154 18-178 1-156 (200)
141 cd04111 Rab39 Rab39 subfamily. 99.9 2.6E-23 5.7E-28 203.4 18.5 161 12-177 2-167 (211)
142 PLN03110 Rab GTPase; Provision 99.9 3.9E-23 8.4E-28 203.0 19.7 164 421-590 10-175 (216)
143 cd04113 Rab4 Rab4 subfamily. 99.9 3.4E-23 7.4E-28 194.2 18.5 158 424-587 1-160 (161)
144 PLN03118 Rab family protein; P 99.9 3.7E-23 8E-28 202.9 19.4 171 4-178 6-179 (211)
145 cd04149 Arf6 Arf6 subfamily. 99.9 1.1E-23 2.5E-28 198.6 15.1 157 10-173 7-167 (168)
146 cd04148 RGK RGK subfamily. Th 99.9 3.2E-23 7E-28 204.1 18.9 190 424-620 1-197 (221)
147 cd04132 Rho4_like Rho4-like su 99.9 3.4E-23 7.3E-28 199.4 18.6 162 424-592 1-170 (187)
148 cd01870 RhoA_like RhoA-like su 99.9 2.7E-23 5.9E-28 197.7 17.6 163 12-175 1-174 (175)
149 cd04177 RSR1 RSR1 subgroup. R 99.9 3.8E-23 8.1E-28 195.4 18.3 161 12-176 1-164 (168)
150 cd04125 RabA_like RabA-like su 99.9 3.1E-23 6.7E-28 199.7 18.0 161 13-178 1-164 (188)
151 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.4E-23 1.4E-27 194.2 19.6 161 423-588 2-168 (170)
152 cd04126 Rab20 Rab20 subfamily. 99.9 4.9E-23 1.1E-27 201.2 18.9 156 424-589 1-190 (220)
153 cd04148 RGK RGK subfamily. Th 99.9 6.6E-23 1.4E-27 201.9 19.9 157 13-176 1-163 (221)
154 cd01892 Miro2 Miro2 subfamily. 99.9 3.4E-23 7.4E-28 195.6 17.2 163 10-177 2-167 (169)
155 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.4E-23 9.5E-28 194.0 17.8 158 13-175 1-163 (164)
156 smart00176 RAN Ran (Ras-relate 99.9 4E-23 8.7E-28 199.2 17.8 155 429-591 1-156 (200)
157 cd01863 Rab18 Rab18 subfamily. 99.9 7.5E-23 1.6E-27 191.8 19.2 159 424-587 1-160 (161)
158 cd04146 RERG_RasL11_like RERG/ 99.9 2.9E-23 6.3E-28 195.5 16.0 157 14-175 1-163 (165)
159 smart00174 RHO Rho (Ras homolo 99.9 4.2E-23 9.1E-28 196.2 16.8 158 426-590 1-173 (174)
160 PF00071 Ras: Ras family; Int 99.9 5.5E-23 1.2E-27 193.0 17.2 159 425-589 1-161 (162)
161 cd04118 Rab24 Rab24 subfamily. 99.9 8.7E-23 1.9E-27 197.5 19.0 160 424-590 1-167 (193)
162 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5.7E-23 1.2E-27 194.5 17.2 159 12-175 2-168 (170)
163 cd01861 Rab6 Rab6 subfamily. 99.9 1E-22 2.2E-27 190.8 18.7 158 424-587 1-160 (161)
164 cd04118 Rab24 Rab24 subfamily. 99.9 7.9E-23 1.7E-27 197.8 18.0 162 13-177 1-167 (193)
165 PLN03108 Rab family protein; P 99.9 1.6E-22 3.4E-27 197.9 20.1 164 421-590 4-169 (210)
166 cd01860 Rab5_related Rab5-rela 99.9 1E-22 2.2E-27 191.3 18.1 159 12-175 1-162 (163)
167 PLN00223 ADP-ribosylation fact 99.9 9.1E-23 2E-27 194.7 17.8 158 10-177 15-179 (181)
168 smart00175 RAB Rab subfamily o 99.9 1.8E-22 3.9E-27 189.8 19.3 160 424-589 1-162 (164)
169 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.2E-22 4.7E-27 189.3 19.5 158 424-588 1-163 (164)
170 cd04129 Rho2 Rho2 subfamily. 99.9 1.2E-22 2.6E-27 195.3 18.0 165 12-178 1-175 (187)
171 cd01860 Rab5_related Rab5-rela 99.9 2.4E-22 5.2E-27 188.8 19.7 159 424-588 2-162 (163)
172 smart00177 ARF ARF-like small 99.9 1.6E-22 3.4E-27 192.3 18.5 156 10-175 11-173 (175)
173 cd01873 RhoBTB RhoBTB subfamil 99.9 1E-22 2.2E-27 196.1 17.4 156 423-587 2-194 (195)
174 smart00175 RAB Rab subfamily o 99.9 1.2E-22 2.7E-27 190.8 17.6 159 13-176 1-162 (164)
175 cd04177 RSR1 RSR1 subgroup. R 99.9 1.8E-22 3.9E-27 190.7 18.4 161 424-589 2-164 (168)
176 cd04103 Centaurin_gamma Centau 99.9 1.4E-22 3E-27 188.9 17.3 153 424-587 1-157 (158)
177 cd01861 Rab6 Rab6 subfamily. 99.9 1.5E-22 3.3E-27 189.7 17.7 157 13-174 1-160 (161)
178 PLN03108 Rab family protein; P 99.9 2.2E-22 4.7E-27 196.9 19.3 163 10-177 4-169 (210)
179 KOG0097 GTPase Rab14, small G 99.9 9.7E-23 2.1E-27 172.7 14.2 163 421-589 9-173 (215)
180 cd01862 Rab7 Rab7 subfamily. 99.9 3.4E-22 7.3E-27 189.5 19.8 165 424-590 1-168 (172)
181 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1E-22 2.2E-27 190.4 15.6 155 13-173 1-158 (159)
182 cd00157 Rho Rho (Ras homology) 99.9 1.3E-22 2.8E-27 192.2 16.4 160 13-173 1-170 (171)
183 KOG0081 GTPase Rab27, small G 99.9 4.7E-24 1E-28 184.5 5.5 160 12-176 9-181 (219)
184 cd01862 Rab7 Rab7 subfamily. 99.9 2.8E-22 6E-27 190.1 18.1 162 13-178 1-169 (172)
185 cd04139 RalA_RalB RalA/RalB su 99.9 3.2E-22 6.9E-27 188.0 18.2 159 13-176 1-162 (164)
186 cd04158 ARD1 ARD1 subfamily. 99.9 2.2E-22 4.8E-27 190.2 17.1 157 14-178 1-163 (169)
187 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-22 5.4E-27 190.7 17.4 156 424-586 1-171 (173)
188 PTZ00133 ADP-ribosylation fact 99.9 3.3E-22 7.2E-27 191.1 18.0 162 10-177 15-179 (182)
189 PLN03118 Rab family protein; P 99.9 5E-22 1.1E-26 194.8 19.7 165 421-591 12-179 (211)
190 cd04135 Tc10 TC10 subfamily. 99.9 2.7E-22 5.8E-27 190.7 17.2 158 424-588 1-173 (174)
191 cd04123 Rab21 Rab21 subfamily. 99.9 4.9E-22 1.1E-26 186.3 17.9 158 13-175 1-161 (162)
192 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.9E-22 4.2E-27 189.5 14.5 154 15-173 2-163 (164)
193 cd04123 Rab21 Rab21 subfamily. 99.9 1E-21 2.2E-26 184.1 19.4 159 424-588 1-161 (162)
194 cd01863 Rab18 Rab18 subfamily. 99.9 6.8E-22 1.5E-26 185.3 18.0 156 13-174 1-160 (161)
195 KOG0081 GTPase Rab27, small G 99.9 1.8E-23 3.9E-28 180.9 5.8 165 421-590 7-182 (219)
196 KOG0083 GTPase Rab26/Rab37, sm 99.9 1E-23 2.3E-28 176.9 3.9 156 17-177 2-161 (192)
197 cd04139 RalA_RalB RalA/RalB su 99.9 1.6E-21 3.4E-26 183.2 19.1 160 424-589 1-162 (164)
198 KOG0395 Ras-related GTPase [Ge 99.9 4.9E-22 1.1E-26 190.0 15.3 163 11-178 2-167 (196)
199 KOG0097 GTPase Rab14, small G 99.9 2.8E-22 6.2E-27 169.9 12.0 163 11-178 10-175 (215)
200 cd04154 Arl2 Arl2 subfamily. 99.9 9.7E-22 2.1E-26 186.6 17.0 157 9-173 11-172 (173)
201 cd04146 RERG_RasL11_like RERG/ 99.9 7.7E-22 1.7E-26 185.8 15.9 159 425-589 1-164 (165)
202 PTZ00132 GTP-binding nuclear p 99.9 4.8E-21 1E-25 188.6 22.2 169 5-180 2-172 (215)
203 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.8E-22 1.5E-26 189.3 15.4 162 11-177 2-171 (183)
204 cd01870 RhoA_like RhoA-like su 99.9 1.9E-21 4E-26 185.1 18.2 158 424-588 2-174 (175)
205 cd04114 Rab30 Rab30 subfamily. 99.9 2.4E-21 5.2E-26 183.1 18.7 161 10-175 5-168 (169)
206 cd04149 Arf6 Arf6 subfamily. 99.9 1.8E-21 4E-26 183.6 17.0 155 422-586 8-167 (168)
207 KOG0395 Ras-related GTPase [Ge 99.9 1.5E-21 3.2E-26 186.6 16.2 166 423-594 3-170 (196)
208 cd04114 Rab30 Rab30 subfamily. 99.9 5.9E-21 1.3E-25 180.5 19.8 161 422-588 6-168 (169)
209 cd04151 Arl1 Arl1 subfamily. 99.9 2.6E-21 5.7E-26 180.8 17.1 154 14-173 1-157 (158)
210 cd04137 RheB Rheb (Ras Homolog 99.9 2.8E-21 6.1E-26 184.8 17.7 163 12-178 1-165 (180)
211 cd04147 Ras_dva Ras-dva subfam 99.9 2.5E-21 5.5E-26 187.9 17.3 160 14-177 1-164 (198)
212 cd00876 Ras Ras family. The R 99.9 2.2E-21 4.8E-26 181.4 16.3 156 14-174 1-159 (160)
213 PLN00223 ADP-ribosylation fact 99.9 3.3E-21 7.1E-26 184.0 17.7 157 421-590 15-179 (181)
214 cd04157 Arl6 Arl6 subfamily. 99.9 1.4E-21 3E-26 183.4 14.5 153 14-173 1-161 (162)
215 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2E-21 4.3E-26 184.6 15.8 158 10-173 13-173 (174)
216 cd00154 Rab Rab family. Rab G 99.9 4.7E-21 1E-25 178.5 18.1 156 424-585 1-158 (159)
217 smart00177 ARF ARF-like small 99.9 4.6E-21 1E-25 182.2 17.8 154 422-588 12-173 (175)
218 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.8E-21 6.2E-26 180.6 16.1 153 424-586 1-158 (159)
219 cd04129 Rho2 Rho2 subfamily. 99.9 5.9E-21 1.3E-25 183.5 18.4 166 424-596 2-180 (187)
220 cd00154 Rab Rab family. Rab G 99.9 3.6E-21 7.8E-26 179.3 16.3 155 13-172 1-158 (159)
221 cd01893 Miro1 Miro1 subfamily. 99.9 8.6E-21 1.9E-25 178.8 18.3 159 424-590 1-165 (166)
222 cd04147 Ras_dva Ras-dva subfam 99.9 8.6E-21 1.9E-25 184.1 18.4 160 425-590 1-164 (198)
223 cd04137 RheB Rheb (Ras Homolog 99.9 1.5E-20 3.2E-25 179.8 19.4 165 424-594 2-168 (180)
224 cd00876 Ras Ras family. The R 99.9 1.1E-20 2.5E-25 176.5 18.2 157 425-587 1-159 (160)
225 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.8E-21 6.2E-26 180.9 13.9 155 14-173 1-159 (160)
226 cd04158 ARD1 ARD1 subfamily. 99.9 7.1E-21 1.5E-25 179.9 16.6 155 425-589 1-161 (169)
227 PTZ00133 ADP-ribosylation fact 99.9 1E-20 2.2E-25 180.8 17.8 156 421-589 15-178 (182)
228 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 9.4E-21 2E-25 181.4 17.2 162 423-590 3-171 (183)
229 PTZ00132 GTP-binding nuclear p 99.9 3.5E-20 7.6E-25 182.4 21.7 163 420-590 6-169 (215)
230 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.8E-21 8.3E-26 181.3 14.1 156 14-173 1-166 (167)
231 cd00157 Rho Rho (Ras homology) 99.9 8.1E-21 1.8E-25 179.8 16.3 156 424-586 1-170 (171)
232 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.2E-21 9E-26 180.4 13.0 151 425-586 1-163 (164)
233 cd04154 Arl2 Arl2 subfamily. 99.9 1.9E-20 4.1E-25 177.8 17.2 156 421-586 12-172 (173)
234 smart00178 SAR Sar1p-like memb 99.9 1.5E-20 3.2E-25 180.2 16.5 159 10-174 15-183 (184)
235 cd00879 Sar1 Sar1 subfamily. 99.9 1.6E-20 3.4E-25 181.3 16.8 158 10-174 17-189 (190)
236 KOG4252 GTP-binding protein [S 99.8 5.3E-22 1.2E-26 175.3 5.2 161 422-589 19-181 (246)
237 cd04102 RabL3 RabL3 (Rab-like3 99.8 1.6E-20 3.4E-25 181.0 15.9 148 13-164 1-178 (202)
238 KOG4252 GTP-binding protein [S 99.8 8.5E-22 1.9E-26 174.1 6.1 169 4-177 12-182 (246)
239 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.5E-20 5.4E-25 174.1 16.2 154 14-173 1-157 (158)
240 cd04157 Arl6 Arl6 subfamily. 99.8 3.2E-20 6.8E-25 174.1 16.8 155 425-586 1-161 (162)
241 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 4.4E-20 9.4E-25 175.4 16.3 155 422-586 14-173 (174)
242 cd04102 RabL3 RabL3 (Rab-like3 99.8 6.2E-20 1.4E-24 176.9 17.2 149 424-575 1-175 (202)
243 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.8E-20 6E-25 175.5 14.4 153 14-173 1-166 (167)
244 cd04156 ARLTS1 ARLTS1 subfamil 99.8 7.2E-20 1.6E-24 171.4 16.2 152 425-586 1-159 (160)
245 PRK15494 era GTPase Era; Provi 99.8 1.2E-19 2.5E-24 189.6 18.9 175 10-195 50-234 (339)
246 COG1159 Era GTPase [General fu 99.8 1.3E-19 2.9E-24 176.7 17.9 184 423-614 6-199 (298)
247 TIGR00436 era GTP-binding prot 99.8 2.1E-19 4.6E-24 182.6 20.2 179 425-614 2-191 (270)
248 cd01897 NOG NOG1 is a nucleola 99.8 1.1E-19 2.4E-24 171.5 16.3 154 14-175 2-167 (168)
249 KOG0393 Ras-related small GTPa 99.8 3.2E-20 7E-25 172.6 12.0 165 422-593 3-183 (198)
250 cd04159 Arl10_like Arl10-like 99.8 9.9E-20 2.1E-24 169.7 15.2 155 14-173 1-158 (159)
251 cd04151 Arl1 Arl1 subfamily. 99.8 2.3E-19 5E-24 167.6 17.1 149 425-586 1-157 (158)
252 cd00879 Sar1 Sar1 subfamily. 99.8 3.8E-19 8.3E-24 171.6 18.3 157 421-587 17-189 (190)
253 cd01890 LepA LepA subfamily. 99.8 2.2E-19 4.8E-24 171.4 16.1 155 14-176 2-177 (179)
254 smart00178 SAR Sar1p-like memb 99.8 4.1E-19 8.8E-24 170.2 17.7 154 421-587 15-183 (184)
255 TIGR00436 era GTP-binding prot 99.8 4.1E-19 8.8E-24 180.6 18.5 169 14-193 2-180 (270)
256 cd04155 Arl3 Arl3 subfamily. 99.8 2.5E-19 5.5E-24 170.0 15.3 155 9-173 11-172 (173)
257 PLN00023 GTP-binding protein; 99.8 3.4E-19 7.3E-24 179.2 16.8 147 417-565 15-190 (334)
258 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.6E-19 1E-23 165.5 16.7 152 425-586 1-157 (158)
259 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.3E-19 4.9E-24 169.2 14.7 153 425-586 1-166 (167)
260 COG1159 Era GTPase [General fu 99.8 7.4E-19 1.6E-23 171.6 18.6 182 10-200 4-195 (298)
261 TIGR02528 EutP ethanolamine ut 99.8 1.2E-19 2.7E-24 166.2 12.4 134 425-585 2-141 (142)
262 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.7E-19 8E-24 167.8 15.7 153 425-586 1-166 (167)
263 cd01890 LepA LepA subfamily. 99.8 6.6E-19 1.4E-23 168.2 17.4 155 425-589 2-177 (179)
264 PF00025 Arf: ADP-ribosylation 99.8 1.1E-19 2.5E-24 172.2 12.0 160 9-175 11-175 (175)
265 cd01898 Obg Obg subfamily. Th 99.8 6.2E-19 1.3E-23 166.8 16.6 161 425-587 2-169 (170)
266 cd01898 Obg Obg subfamily. Th 99.8 4.4E-19 9.5E-24 167.8 15.6 155 14-174 2-169 (170)
267 PF02421 FeoB_N: Ferrous iron 99.8 1.8E-19 3.9E-24 163.9 12.0 147 424-584 1-156 (156)
268 COG0486 ThdF Predicted GTPase 99.8 7.7E-19 1.7E-23 181.5 18.1 189 415-621 209-406 (454)
269 cd04171 SelB SelB subfamily. 99.8 3.2E-19 6.9E-24 167.5 14.1 154 13-173 1-163 (164)
270 PLN00023 GTP-binding protein; 99.8 4.6E-19 1E-23 178.3 15.9 142 6-148 15-188 (334)
271 cd01878 HflX HflX subfamily. 99.8 1.5E-18 3.2E-23 169.5 18.7 159 420-587 38-203 (204)
272 cd04159 Arl10_like Arl10-like 99.8 1E-18 2.3E-23 162.7 16.7 153 426-586 2-158 (159)
273 TIGR03156 GTP_HflX GTP-binding 99.8 2E-18 4.3E-23 180.4 20.4 157 421-587 187-350 (351)
274 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2E-18 4.3E-23 185.5 20.4 186 420-621 200-394 (442)
275 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.8E-19 1.5E-23 166.1 15.0 157 14-175 2-165 (168)
276 COG0486 ThdF Predicted GTPase 99.8 1.3E-18 2.9E-23 179.7 17.0 204 6-224 211-429 (454)
277 TIGR02528 EutP ethanolamine ut 99.8 5.3E-19 1.2E-23 162.0 11.6 135 14-172 2-141 (142)
278 cd04155 Arl3 Arl3 subfamily. 99.8 3.1E-18 6.8E-23 162.5 17.2 153 421-586 12-172 (173)
279 PRK12299 obgE GTPase CgtA; Rev 99.8 1.9E-18 4.1E-23 178.9 16.9 159 13-177 159-329 (335)
280 COG1100 GTPase SAR1 and relate 99.8 1.9E-18 4.1E-23 170.7 16.2 166 11-178 4-187 (219)
281 PRK05291 trmE tRNA modificatio 99.8 1.5E-18 3.3E-23 187.7 16.7 196 9-223 212-423 (449)
282 cd01897 NOG NOG1 is a nucleola 99.8 4.3E-18 9.2E-23 160.7 17.7 157 424-588 1-167 (168)
283 cd04171 SelB SelB subfamily. 99.8 4.6E-18 9.9E-23 159.6 17.3 154 424-586 1-163 (164)
284 PF02421 FeoB_N: Ferrous iron 99.8 5E-19 1.1E-23 161.0 10.2 147 13-171 1-156 (156)
285 PRK15494 era GTPase Era; Provi 99.8 9.5E-18 2.1E-22 175.2 20.5 181 421-614 50-243 (339)
286 TIGR00231 small_GTP small GTP- 99.8 4.3E-18 9.3E-23 158.3 16.1 155 12-171 1-159 (161)
287 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.2E-18 9.1E-23 183.1 17.7 199 8-223 199-416 (442)
288 PRK12299 obgE GTPase CgtA; Rev 99.8 8.3E-18 1.8E-22 174.2 19.0 165 423-590 158-329 (335)
289 PRK05291 trmE tRNA modificatio 99.8 7.7E-18 1.7E-22 182.3 19.4 181 420-620 212-400 (449)
290 PRK04213 GTP-binding protein; 99.8 1.6E-18 3.4E-23 168.9 12.3 157 8-177 5-193 (201)
291 KOG0073 GTP-binding ADP-ribosy 99.8 8.2E-18 1.8E-22 147.5 15.3 163 9-176 13-178 (185)
292 cd01878 HflX HflX subfamily. 99.8 3.3E-18 7.3E-23 166.9 14.5 154 10-174 39-203 (204)
293 KOG0075 GTP-binding ADP-ribosy 99.8 6.2E-19 1.3E-23 151.1 7.9 162 10-175 18-181 (186)
294 cd00881 GTP_translation_factor 99.8 5E-18 1.1E-22 163.4 14.9 159 14-176 1-187 (189)
295 TIGR03156 GTP_HflX GTP-binding 99.8 3.6E-18 7.8E-23 178.5 14.7 152 11-174 188-350 (351)
296 COG1160 Predicted GTPases [Gen 99.8 7.5E-18 1.6E-22 173.8 16.4 152 424-589 4-165 (444)
297 PRK11058 GTPase HflX; Provisio 99.8 1.8E-17 3.9E-22 177.1 19.8 161 422-590 196-363 (426)
298 cd01879 FeoB Ferrous iron tran 99.8 9E-18 1.9E-22 156.6 14.9 146 17-174 1-155 (158)
299 cd01891 TypA_BipA TypA (tyrosi 99.8 1.1E-17 2.4E-22 161.8 15.8 150 13-167 3-173 (194)
300 PTZ00099 rab6; Provisional 99.8 2.3E-17 5.1E-22 156.1 17.2 141 446-592 3-145 (176)
301 TIGR02729 Obg_CgtA Obg family 99.8 1.9E-17 4.1E-22 171.5 18.0 163 423-588 157-328 (329)
302 COG3596 Predicted GTPase [Gene 99.8 1.5E-17 3.3E-22 159.7 15.9 224 419-650 35-294 (296)
303 cd01879 FeoB Ferrous iron tran 99.8 1.8E-17 3.8E-22 154.7 16.1 150 428-589 1-157 (158)
304 PRK00089 era GTPase Era; Revie 99.8 4E-17 8.6E-22 168.4 20.3 182 424-613 6-197 (292)
305 PRK03003 GTP-binding protein D 99.8 6.4E-18 1.4E-22 185.0 15.1 159 11-177 210-383 (472)
306 PRK00089 era GTPase Era; Revie 99.8 2.7E-17 5.8E-22 169.7 18.9 172 11-191 4-185 (292)
307 KOG0070 GTP-binding ADP-ribosy 99.8 5.8E-18 1.3E-22 153.3 12.0 166 7-177 12-179 (181)
308 cd01895 EngA2 EngA2 subfamily. 99.8 2.2E-17 4.7E-22 156.4 16.6 157 12-174 2-173 (174)
309 PF00025 Arf: ADP-ribosylation 99.8 1.8E-17 4E-22 157.1 15.9 158 421-588 12-175 (175)
310 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.9E-17 8.4E-22 154.1 17.8 156 425-589 2-166 (168)
311 PRK12298 obgE GTPase CgtA; Rev 99.8 5.2E-17 1.1E-21 171.6 20.4 191 424-616 160-362 (390)
312 PTZ00099 rab6; Provisional 99.7 2.2E-17 4.8E-22 156.3 15.2 140 35-179 3-145 (176)
313 PRK12298 obgE GTPase CgtA; Rev 99.7 4.4E-17 9.6E-22 172.1 19.0 173 14-192 161-348 (390)
314 TIGR02729 Obg_CgtA Obg family 99.7 2.1E-17 4.6E-22 171.1 16.1 156 13-175 158-328 (329)
315 KOG0073 GTP-binding ADP-ribosy 99.7 7.9E-17 1.7E-21 141.4 16.4 160 421-590 14-179 (185)
316 cd01894 EngA1 EngA1 subfamily. 99.7 1.5E-17 3.3E-22 154.8 12.9 146 16-174 1-156 (157)
317 TIGR00231 small_GTP small GTP- 99.7 6.7E-17 1.5E-21 150.2 17.1 156 424-585 2-160 (161)
318 PRK15467 ethanolamine utilizat 99.7 1.8E-17 3.8E-22 154.4 13.0 141 14-176 3-147 (158)
319 TIGR03598 GTPase_YsxC ribosome 99.7 2.2E-17 4.9E-22 157.5 13.5 153 8-165 14-179 (179)
320 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5E-17 1.1E-21 151.2 15.3 145 13-175 2-156 (157)
321 PF08477 Miro: Miro-like prote 99.7 1.6E-17 3.5E-22 147.2 11.3 113 14-126 1-119 (119)
322 cd01891 TypA_BipA TypA (tyrosi 99.7 4.8E-17 1E-21 157.3 15.3 145 425-579 4-172 (194)
323 cd01889 SelB_euk SelB subfamil 99.7 3.2E-17 6.8E-22 158.3 13.5 162 13-178 1-188 (192)
324 COG1100 GTPase SAR1 and relate 99.7 1.9E-16 4.1E-21 156.4 19.1 163 423-590 5-186 (219)
325 cd04163 Era Era subfamily. Er 99.7 6.1E-17 1.3E-21 152.0 14.9 157 11-174 2-167 (168)
326 TIGR03594 GTPase_EngA ribosome 99.7 6.5E-17 1.4E-21 176.4 16.9 161 10-177 170-345 (429)
327 PRK00454 engB GTP-binding prot 99.7 7.1E-17 1.5E-21 156.5 15.1 165 5-176 17-194 (196)
328 cd01881 Obg_like The Obg-like 99.7 4.5E-17 9.7E-22 154.9 13.1 152 17-174 1-175 (176)
329 PRK12297 obgE GTPase CgtA; Rev 99.7 1.2E-16 2.7E-21 169.4 17.6 155 14-178 160-329 (424)
330 cd00881 GTP_translation_factor 99.7 1.9E-16 4E-21 152.4 17.2 156 425-589 1-187 (189)
331 PRK04213 GTP-binding protein; 99.7 1.1E-16 2.3E-21 155.9 15.5 153 422-590 8-193 (201)
332 PRK15467 ethanolamine utilizat 99.7 5.7E-17 1.2E-21 151.0 12.8 139 425-590 3-148 (158)
333 cd04170 EF-G_bact Elongation f 99.7 2E-17 4.2E-22 168.3 9.8 228 14-249 1-268 (268)
334 PRK11058 GTPase HflX; Provisio 99.7 1.4E-16 3.1E-21 170.2 16.8 155 13-177 198-363 (426)
335 cd01894 EngA1 EngA1 subfamily. 99.7 1.6E-16 3.5E-21 147.8 15.1 147 427-587 1-156 (157)
336 PRK12296 obgE GTPase CgtA; Rev 99.7 2.1E-16 4.6E-21 169.4 17.9 169 422-593 158-344 (500)
337 cd04163 Era Era subfamily. Er 99.7 4.2E-16 9.1E-21 146.3 17.3 157 423-587 3-167 (168)
338 PRK12297 obgE GTPase CgtA; Rev 99.7 4.4E-16 9.4E-21 165.2 19.2 162 424-591 159-329 (424)
339 cd04168 TetM_like Tet(M)-like 99.7 1.1E-16 2.3E-21 158.7 13.7 204 14-249 1-237 (237)
340 cd00882 Ras_like_GTPase Ras-li 99.7 2E-16 4.4E-21 145.5 14.3 153 17-172 1-156 (157)
341 cd01889 SelB_euk SelB subfamil 99.7 2.8E-16 6.1E-21 151.7 15.6 159 424-591 1-188 (192)
342 cd01895 EngA2 EngA2 subfamily. 99.7 5.5E-16 1.2E-20 146.7 17.3 156 423-587 2-173 (174)
343 cd01881 Obg_like The Obg-like 99.7 2E-16 4.3E-21 150.4 13.8 158 428-587 1-175 (176)
344 TIGR00487 IF-2 translation ini 99.7 2.6E-16 5.5E-21 174.3 16.3 156 9-173 84-247 (587)
345 KOG1423 Ras-like GTPase ERA [C 99.7 5.1E-16 1.1E-20 150.2 16.1 168 418-592 67-274 (379)
346 cd01886 EF-G Elongation factor 99.7 1.2E-16 2.6E-21 161.2 12.4 225 14-249 1-270 (270)
347 TIGR03598 GTPase_YsxC ribosome 99.7 5E-16 1.1E-20 148.1 15.9 147 420-578 15-179 (179)
348 PF00009 GTP_EFTU: Elongation 99.7 2.7E-16 5.9E-21 151.2 13.3 157 11-176 2-187 (188)
349 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-16 3.1E-21 160.4 11.9 223 13-249 3-267 (267)
350 cd00882 Ras_like_GTPase Ras-li 99.7 9.3E-16 2E-20 141.1 16.4 153 428-585 1-156 (157)
351 KOG0071 GTP-binding ADP-ribosy 99.7 3.4E-16 7.3E-21 133.3 11.8 162 10-175 15-177 (180)
352 KOG3883 Ras family small GTPas 99.7 1.8E-15 3.9E-20 130.8 16.4 170 6-180 3-179 (198)
353 CHL00189 infB translation init 99.7 3.8E-16 8.3E-21 175.0 15.7 158 9-174 241-408 (742)
354 PF08477 Miro: Miro-like prote 99.7 3.5E-16 7.7E-21 138.5 12.4 114 425-544 1-119 (119)
355 PRK05306 infB translation init 99.7 5.2E-16 1.1E-20 175.6 16.8 161 8-173 286-449 (787)
356 KOG1673 Ras GTPases [General f 99.7 9.2E-17 2E-21 139.0 8.2 169 7-178 15-188 (205)
357 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1E-15 2.2E-20 142.3 16.1 147 424-588 2-156 (157)
358 cd04105 SR_beta Signal recogni 99.7 7.3E-16 1.6E-20 149.6 15.6 117 14-130 2-124 (203)
359 PRK00454 engB GTP-binding prot 99.7 2.1E-15 4.6E-20 146.2 18.7 158 420-589 21-194 (196)
360 PRK12296 obgE GTPase CgtA; Rev 99.7 4.9E-16 1.1E-20 166.6 15.3 159 12-177 159-341 (500)
361 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 1.5E-16 3.3E-21 143.1 9.5 160 422-589 9-169 (216)
362 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 1.7E-16 3.6E-21 142.8 9.3 162 10-178 8-171 (216)
363 TIGR01393 lepA GTP-binding pro 99.7 1.1E-15 2.3E-20 170.4 17.6 159 13-179 4-183 (595)
364 cd01888 eIF2_gamma eIF2-gamma 99.7 6.5E-16 1.4E-20 150.3 14.1 164 13-178 1-201 (203)
365 PRK00093 GTP-binding protein D 99.7 1.3E-15 2.9E-20 166.2 18.1 152 424-588 2-161 (435)
366 TIGR00487 IF-2 translation ini 99.7 1.7E-15 3.7E-20 167.8 18.9 156 420-587 84-248 (587)
367 TIGR01393 lepA GTP-binding pro 99.7 2.2E-15 4.8E-20 167.8 19.8 159 424-592 4-183 (595)
368 PRK09518 bifunctional cytidyla 99.7 6.6E-16 1.4E-20 177.1 15.4 159 11-177 449-622 (712)
369 PRK09554 feoB ferrous iron tra 99.7 1.6E-15 3.5E-20 172.7 18.1 153 11-175 2-167 (772)
370 TIGR00475 selB selenocysteine- 99.7 7.7E-16 1.7E-20 171.5 14.9 156 13-176 1-166 (581)
371 COG2262 HflX GTPases [General 99.7 5.6E-15 1.2E-19 150.2 18.9 174 408-590 177-357 (411)
372 KOG3883 Ras family small GTPas 99.6 6E-15 1.3E-19 127.6 16.0 167 422-594 8-180 (198)
373 KOG0075 GTP-binding ADP-ribosy 99.6 7.9E-16 1.7E-20 132.2 10.4 157 421-589 18-182 (186)
374 PF00009 GTP_EFTU: Elongation 99.6 1.8E-15 3.8E-20 145.5 14.2 158 422-589 2-187 (188)
375 PF10662 PduV-EutP: Ethanolami 99.6 1.6E-15 3.5E-20 134.6 12.0 139 425-585 3-142 (143)
376 TIGR00491 aIF-2 translation in 99.6 2.6E-15 5.6E-20 165.9 16.1 159 11-173 3-213 (590)
377 cd01896 DRG The developmentall 99.6 4.7E-15 1E-19 146.9 15.8 150 14-175 2-225 (233)
378 cd00880 Era_like Era (E. coli 99.6 3.2E-15 6.9E-20 139.0 13.5 152 17-174 1-162 (163)
379 KOG0070 GTP-binding ADP-ribosy 99.6 4.1E-15 9E-20 134.8 13.4 161 420-590 14-179 (181)
380 TIGR00475 selB selenocysteine- 99.6 6.8E-15 1.5E-19 163.9 18.1 156 424-590 1-167 (581)
381 cd01888 eIF2_gamma eIF2-gamma 99.6 8.7E-15 1.9E-19 142.3 16.4 161 424-591 1-201 (203)
382 PRK09554 feoB ferrous iron tra 99.6 1.4E-14 3E-19 165.1 20.5 155 423-589 3-168 (772)
383 COG0218 Predicted GTPase [Gene 99.6 2.5E-14 5.5E-19 132.6 18.4 157 421-589 22-197 (200)
384 KOG1673 Ras GTPases [General f 99.6 3.5E-15 7.5E-20 129.4 11.7 169 422-597 19-194 (205)
385 KOG0076 GTP-binding ADP-ribosy 99.6 6.6E-16 1.4E-20 137.0 7.3 167 9-178 14-189 (197)
386 TIGR00437 feoB ferrous iron tr 99.6 2.6E-15 5.7E-20 167.4 13.7 145 19-175 1-154 (591)
387 KOG1191 Mitochondrial GTPase [ 99.6 6.7E-15 1.5E-19 151.6 15.2 215 9-228 265-510 (531)
388 TIGR00437 feoB ferrous iron tr 99.6 4.2E-15 9.1E-20 165.7 14.6 147 430-588 1-154 (591)
389 cd01884 EF_Tu EF-Tu subfamily. 99.6 8E-15 1.7E-19 140.8 14.5 151 11-165 1-172 (195)
390 CHL00189 infB translation init 99.6 1.1E-14 2.4E-19 163.2 17.8 159 420-588 241-409 (742)
391 cd01876 YihA_EngB The YihA (En 99.6 6.7E-15 1.5E-19 138.5 13.4 156 14-174 1-169 (170)
392 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.9E-15 8.5E-20 145.4 12.1 151 14-167 1-185 (208)
393 KOG4423 GTP-binding protein-li 99.6 5.4E-17 1.2E-21 145.1 -1.1 170 421-592 23-197 (229)
394 COG0218 Predicted GTPase [Gene 99.6 2.4E-14 5.3E-19 132.7 16.0 163 6-176 18-197 (200)
395 KOG1423 Ras-like GTPase ERA [C 99.6 1.4E-14 3E-19 140.3 14.9 170 6-178 66-273 (379)
396 PRK05306 infB translation init 99.6 1.7E-14 3.6E-19 163.4 17.6 157 420-587 287-450 (787)
397 PRK12317 elongation factor 1-a 99.6 8E-15 1.7E-19 159.0 13.8 159 8-168 2-197 (425)
398 PRK05433 GTP-binding protein L 99.6 1.7E-14 3.8E-19 160.8 16.6 159 13-179 8-187 (600)
399 cd01884 EF_Tu EF-Tu subfamily. 99.6 4.5E-14 9.7E-19 135.6 17.2 146 423-577 2-171 (195)
400 COG0370 FeoB Fe2+ transport sy 99.6 2.1E-14 4.6E-19 155.0 16.3 157 423-593 3-168 (653)
401 KOG1191 Mitochondrial GTPase [ 99.6 1.1E-14 2.3E-19 150.1 12.9 194 420-616 265-477 (531)
402 COG0370 FeoB Fe2+ transport sy 99.6 1.8E-14 3.8E-19 155.7 15.1 158 11-180 2-168 (653)
403 cd00880 Era_like Era (E. coli 99.6 2.8E-14 6E-19 132.6 14.6 152 428-587 1-162 (163)
404 TIGR00157 ribosome small subun 99.6 1.6E-14 3.5E-19 143.8 13.8 92 70-169 24-116 (245)
405 KOG0074 GTP-binding ADP-ribosy 99.6 1.2E-14 2.6E-19 124.1 10.6 158 8-174 13-177 (185)
406 COG2229 Predicted GTPase [Gene 99.6 8E-14 1.7E-18 126.1 16.3 162 6-174 4-176 (187)
407 cd04167 Snu114p Snu114p subfam 99.6 1.8E-14 3.8E-19 141.4 13.0 148 14-165 2-192 (213)
408 KOG0076 GTP-binding ADP-ribosy 99.6 9.9E-15 2.2E-19 129.6 9.8 164 421-591 15-189 (197)
409 KOG0072 GTP-binding ADP-ribosy 99.6 9E-15 1.9E-19 125.3 9.1 160 11-176 17-179 (182)
410 cd01896 DRG The developmentall 99.6 6.7E-14 1.4E-18 138.6 16.9 155 425-589 2-226 (233)
411 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.6E-14 5.6E-19 140.3 13.8 152 14-172 1-219 (224)
412 TIGR00491 aIF-2 translation in 99.6 4.2E-14 9.2E-19 156.3 16.8 156 423-587 4-214 (590)
413 TIGR00483 EF-1_alpha translati 99.6 1.2E-14 2.5E-19 157.7 12.2 159 9-169 4-200 (426)
414 PRK10218 GTP-binding protein; 99.6 4E-14 8.7E-19 157.0 16.6 163 12-179 5-198 (607)
415 PRK05433 GTP-binding protein L 99.6 8.4E-14 1.8E-18 155.4 19.0 160 423-592 7-187 (600)
416 TIGR01394 TypA_BipA GTP-bindin 99.6 3.7E-14 8E-19 157.6 15.6 161 14-179 3-194 (594)
417 cd01876 YihA_EngB The YihA (En 99.6 1.3E-13 2.8E-18 129.6 17.1 151 425-587 1-169 (170)
418 cd04166 CysN_ATPS CysN_ATPS su 99.6 4.1E-14 8.8E-19 138.2 13.9 146 425-580 1-185 (208)
419 TIGR03680 eif2g_arch translati 99.6 2.7E-14 5.8E-19 153.4 13.6 165 10-176 2-196 (406)
420 PRK10512 selenocysteinyl-tRNA- 99.6 4.7E-14 1E-18 157.6 15.8 158 13-175 1-165 (614)
421 KOG4423 GTP-binding protein-li 99.5 3.2E-16 6.8E-21 140.3 -1.6 166 11-179 24-197 (229)
422 PRK04004 translation initiatio 99.5 8.1E-14 1.8E-18 154.9 16.8 157 10-173 4-215 (586)
423 PRK04000 translation initiatio 99.5 5.5E-14 1.2E-18 150.8 14.5 168 7-177 4-202 (411)
424 cd04105 SR_beta Signal recogni 99.5 9.9E-14 2.1E-18 134.7 14.6 121 425-548 2-124 (203)
425 cd04104 p47_IIGP_like p47 (47- 99.5 1E-13 2.3E-18 134.1 14.7 160 12-177 1-185 (197)
426 PRK10512 selenocysteinyl-tRNA- 99.5 2.1E-13 4.5E-18 152.5 18.6 155 425-589 2-166 (614)
427 TIGR00484 EF-G translation elo 99.5 6.3E-14 1.4E-18 160.4 13.1 231 11-251 9-283 (689)
428 PF10662 PduV-EutP: Ethanolami 99.5 8.6E-14 1.9E-18 123.6 10.9 136 14-172 3-142 (143)
429 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.3E-13 5E-18 133.6 15.1 151 425-586 1-220 (224)
430 cd01883 EF1_alpha Eukaryotic e 99.5 7.4E-14 1.6E-18 137.4 11.5 149 14-165 1-194 (219)
431 PRK12736 elongation factor Tu; 99.5 2.2E-13 4.7E-18 145.8 15.4 164 8-176 8-201 (394)
432 PRK12317 elongation factor 1-a 99.5 1.4E-13 3.1E-18 149.2 13.9 152 420-580 3-196 (425)
433 KOG0071 GTP-binding ADP-ribosy 99.5 4.4E-13 9.6E-18 114.5 13.5 156 421-589 15-178 (180)
434 PRK12735 elongation factor Tu; 99.5 3.4E-13 7.3E-18 144.4 15.1 153 7-163 7-180 (396)
435 KOG1489 Predicted GTP-binding 99.5 3.4E-13 7.4E-18 131.7 13.6 160 423-586 196-364 (366)
436 PRK00741 prfC peptide chain re 99.5 9.7E-14 2.1E-18 152.3 11.1 230 10-252 8-279 (526)
437 cd04104 p47_IIGP_like p47 (47- 99.5 5.4E-13 1.2E-17 129.1 14.9 157 423-590 1-185 (197)
438 cd04168 TetM_like Tet(M)-like 99.5 6.5E-13 1.4E-17 131.7 15.7 114 425-547 1-130 (237)
439 KOG1707 Predicted Ras related/ 99.5 2.1E-13 4.5E-18 143.3 12.6 191 420-615 6-201 (625)
440 PRK00007 elongation factor G; 99.5 1.1E-13 2.3E-18 158.3 11.3 234 11-252 9-285 (693)
441 COG1084 Predicted GTPase [Gene 99.5 1.5E-12 3.3E-17 128.5 17.6 168 415-590 160-337 (346)
442 cd01858 NGP_1 NGP-1. Autoanti 99.5 1.3E-12 2.7E-17 121.7 16.4 88 78-172 4-91 (157)
443 cd01885 EF2 EF2 (for archaea a 99.5 9.2E-13 2E-17 128.7 15.9 111 14-128 2-138 (222)
444 COG2262 HflX GTPases [General 99.5 7.6E-13 1.7E-17 134.8 15.5 156 11-177 191-357 (411)
445 PRK04004 translation initiatio 99.5 8.6E-13 1.9E-17 146.8 17.3 153 422-586 5-215 (586)
446 TIGR00485 EF-Tu translation el 99.5 4.1E-13 8.8E-18 143.9 14.1 157 1-162 1-179 (394)
447 cd04167 Snu114p Snu114p subfam 99.5 5.5E-13 1.2E-17 130.8 13.5 155 425-588 2-210 (213)
448 PRK13351 elongation factor G; 99.5 1.9E-13 4E-18 157.0 11.7 234 10-251 6-282 (687)
449 KOG1489 Predicted GTP-binding 99.5 4.7E-13 1E-17 130.7 12.6 154 13-173 197-364 (366)
450 PRK12736 elongation factor Tu; 99.5 1.9E-12 4E-17 138.6 18.4 161 420-589 9-201 (394)
451 CHL00071 tufA elongation facto 99.5 6.9E-13 1.5E-17 142.6 15.1 154 7-164 7-181 (409)
452 KOG0074 GTP-binding ADP-ribosy 99.5 3.2E-13 7E-18 115.4 9.8 156 420-587 14-177 (185)
453 TIGR03680 eif2g_arch translati 99.5 1.1E-12 2.4E-17 140.9 16.6 163 422-591 3-198 (406)
454 PRK10218 GTP-binding protein; 99.5 1.7E-12 3.6E-17 144.2 18.3 161 423-592 5-198 (607)
455 TIGR00483 EF-1_alpha translati 99.5 6E-13 1.3E-17 144.4 14.3 152 420-579 4-197 (426)
456 CHL00071 tufA elongation facto 99.5 2.2E-12 4.8E-17 138.7 18.5 149 420-577 9-181 (409)
457 PRK12735 elongation factor Tu; 99.5 2.1E-12 4.5E-17 138.3 18.1 161 420-589 9-203 (396)
458 TIGR01394 TypA_BipA GTP-bindin 99.5 1.6E-12 3.6E-17 144.6 17.8 159 425-592 3-194 (594)
459 cd01859 MJ1464 MJ1464. This f 99.4 1.7E-12 3.6E-17 120.8 14.9 91 73-173 3-93 (156)
460 PF08355 EF_assoc_1: EF hand a 99.4 5.5E-14 1.2E-18 110.0 3.8 70 349-418 1-75 (76)
461 COG3596 Predicted GTPase [Gene 99.4 6.5E-13 1.4E-17 128.1 11.9 169 6-178 33-224 (296)
462 TIGR00503 prfC peptide chain r 99.4 1.1E-12 2.4E-17 144.0 15.2 131 10-148 9-161 (527)
463 COG1163 DRG Predicted GTPase [ 99.4 1.8E-12 3.9E-17 127.3 14.4 153 11-175 62-288 (365)
464 PRK04000 translation initiatio 99.4 2.8E-12 6.2E-17 137.6 17.2 165 420-591 6-203 (411)
465 cd01899 Ygr210 Ygr210 subfamil 99.4 5.4E-12 1.2E-16 129.7 18.5 80 15-94 1-111 (318)
466 cd01855 YqeH YqeH. YqeH is an 99.4 2.2E-12 4.8E-17 124.2 14.8 93 72-173 24-122 (190)
467 COG1084 Predicted GTPase [Gene 99.4 2.7E-12 5.7E-17 126.9 15.1 160 10-177 166-337 (346)
468 PRK12739 elongation factor G; 99.4 8E-13 1.7E-17 151.3 13.2 231 11-251 7-282 (691)
469 PF01926 MMR_HSR1: 50S ribosom 99.4 1.7E-12 3.6E-17 114.3 12.0 105 14-124 1-116 (116)
470 PRK00049 elongation factor Tu; 99.4 1.9E-12 4.2E-17 138.5 14.6 151 8-163 8-180 (396)
471 PF09439 SRPRB: Signal recogni 99.4 1E-12 2.2E-17 122.4 10.7 118 12-131 3-128 (181)
472 COG2229 Predicted GTPase [Gene 99.4 1E-11 2.2E-16 112.7 16.5 157 421-587 8-176 (187)
473 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 3.8E-12 8.2E-17 123.2 15.0 167 13-184 1-192 (196)
474 TIGR02034 CysN sulfate adenyly 99.4 1.7E-12 3.8E-17 139.3 13.4 151 13-167 1-188 (406)
475 PRK05124 cysN sulfate adenylyl 99.4 2.8E-12 6.1E-17 139.8 15.1 155 9-167 24-216 (474)
476 PLN03127 Elongation factor Tu; 99.4 3.4E-12 7.3E-17 137.8 15.4 164 7-175 56-251 (447)
477 PRK12289 GTPase RsgA; Reviewed 99.4 3E-12 6.5E-17 133.2 14.0 86 75-169 82-168 (352)
478 TIGR00485 EF-Tu translation el 99.4 8.1E-12 1.8E-16 133.9 17.7 147 420-575 9-178 (394)
479 cd01883 EF1_alpha Eukaryotic e 99.4 1.4E-12 3.1E-17 128.3 10.7 145 425-578 1-194 (219)
480 PLN03126 Elongation factor Tu; 99.4 3.4E-12 7.4E-17 138.3 14.4 153 8-164 77-250 (478)
481 COG0536 Obg Predicted GTPase [ 99.4 5.4E-12 1.2E-16 125.1 14.0 167 424-592 160-336 (369)
482 cd01899 Ygr210 Ygr210 subfamil 99.4 3.4E-11 7.3E-16 123.8 20.3 162 426-590 1-270 (318)
483 PLN03126 Elongation factor Tu; 99.4 1.5E-11 3.2E-16 133.4 18.4 148 419-577 77-250 (478)
484 PRK09866 hypothetical protein; 99.4 5.6E-11 1.2E-15 128.1 22.4 112 59-174 230-351 (741)
485 cd04169 RF3 RF3 subfamily. Pe 99.4 1.5E-11 3.2E-16 124.1 16.8 131 425-565 4-154 (267)
486 PRK09866 hypothetical protein; 99.4 1.6E-11 3.5E-16 132.1 17.9 109 472-587 230-351 (741)
487 PRK05506 bifunctional sulfate 99.4 4.7E-12 1E-16 143.8 14.1 156 7-166 19-211 (632)
488 KOG0077 Vesicle coat complex C 99.4 3.8E-12 8.2E-17 112.4 10.2 159 10-172 18-189 (193)
489 COG0536 Obg Predicted GTPase [ 99.4 6.4E-12 1.4E-16 124.7 12.7 160 14-177 161-334 (369)
490 PRK00049 elongation factor Tu; 99.4 2.9E-11 6.3E-16 129.4 18.8 161 420-589 9-203 (396)
491 PLN00043 elongation factor 1-a 99.4 5E-12 1.1E-16 136.6 12.7 154 9-166 4-203 (447)
492 PRK05124 cysN sulfate adenylyl 99.3 1.8E-11 3.9E-16 133.4 17.0 152 421-580 25-216 (474)
493 PRK05506 bifunctional sulfate 99.3 1.3E-11 2.7E-16 140.4 16.3 150 420-579 21-211 (632)
494 COG0532 InfB Translation initi 99.3 7.7E-12 1.7E-16 131.8 13.3 160 10-174 3-168 (509)
495 PRK12288 GTPase RsgA; Reviewed 99.3 1.4E-11 3.1E-16 128.2 15.1 84 80-169 118-201 (347)
496 cd01885 EF2 EF2 (for archaea a 99.3 2.8E-11 6E-16 118.4 16.2 113 425-546 2-138 (222)
497 cd01886 EF-G Elongation factor 99.3 4.4E-12 9.5E-17 128.1 10.6 145 425-581 1-168 (270)
498 PRK09602 translation-associate 99.3 5.4E-11 1.2E-15 126.1 19.3 81 13-93 2-113 (396)
499 PLN03127 Elongation factor Tu; 99.3 4.5E-11 9.8E-16 129.1 18.5 161 420-591 58-254 (447)
500 PRK00741 prfC peptide chain re 99.3 3.7E-11 8.1E-16 132.0 18.0 117 422-547 9-145 (526)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=8e-92 Score=724.47 Aligned_cols=614 Identities=49% Similarity=0.806 Sum_probs=552.8
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
|+....++.++|+++|+.||||||||-+++..+|++..|+......++.++..+.+...|+||+..++........++.|
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 34567788999999999999999999999999999999999999999999999999999999997776666778899999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
|++.+||+++++.+++.+..+|++.+++.. .++||||||||+|+...... +.+..+..++.+|.++..+++|||++
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999999999999999876 68999999999999877655 45556899999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR 240 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~ 240 (670)
-.++.++|+.+.+++++|..|+|+.+.+++++.|.++|.|||.++|.++|++|++.|+|.+|.+||+.++...+++.++.
T Consensus 160 ~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~ 239 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKN 239 (625)
T ss_pred hhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHH
Q 005908 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG 320 (670)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~ 320 (670)
++++..|.|+...++|+.|||.|+.+|+++||+||+|++||+|||+|+|+|.++|+|..+.++|+|++|||+.|++||..
T Consensus 240 vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~ 319 (625)
T KOG1707|consen 240 VVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVD 319 (625)
T ss_pred HHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999548999999999999999999999
Q ss_pred hhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCC-
Q 005908 321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD- 399 (670)
Q Consensus 321 ~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~- 399 (670)
+|.+||.|+||.|+++|+..+|+++|..||....++...+.+..|+++++||+++|.++|++|+..++++|.|+||..+
T Consensus 320 ~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 320 VFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred HHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999999999999999999988899999999999999999999999999999999999986
Q ss_pred --hHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEE
Q 005908 400 --PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477 (670)
Q Consensus 400 --~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~ 477 (670)
+.+++.++++++.+++.+...++.+++.++|+.++|||.|++.|+|+.+...+.+++...+.++.+... +..+++++
T Consensus 400 ~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL 478 (625)
T KOG1707|consen 400 GSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLIL 478 (625)
T ss_pred cccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEE
Confidence 899999999999999889999999999999999999999999999999888666788888999999999 67777888
Q ss_pred ecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHH
Q 005908 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSA 556 (670)
Q Consensus 478 d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~ 556 (670)
.+.|......+ .... ..||+++++||.+++.+|..+...+..-... . ..|+++|++|+|+.+..+. .....
T Consensus 479 ~ei~~~~~~~l-~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~--~~Pc~~va~K~dlDe~~Q~~~iqpd 550 (625)
T KOG1707|consen 479 REIGEDDQDFL-TSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---Y--KIPCLMVATKADLDEVPQRYSIQPD 550 (625)
T ss_pred eecCccccccc-cCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhc---c--CCceEEEeeccccchhhhccCCChH
Confidence 88776432222 1222 7899999999999999998887765543322 1 6999999999999875533 33448
Q ss_pred HHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHH
Q 005908 557 RVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTW 635 (670)
Q Consensus 557 ~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (670)
++++++++++.+.+|.++. . .++|..|...+..|+ +++....... ...+.+.....+ .++..+++.+|..
T Consensus 551 e~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph--~~~~~~~~~~-----~~~~~l~~~~~g-~~~~~g~~~~~~~ 621 (625)
T KOG1707|consen 551 EFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH--IPRIEEEKSS-----LQNRLLMAVSGG-AVAVAGLALYKLY 621 (625)
T ss_pred HHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC--ccccccccch-----hhHHHHHHHHHH-HHHHhhHHHHhhh
Confidence 9999999999999999966 7 899999999999998 4444443333 455555566666 7777777777765
Q ss_pred H
Q 005908 636 T 636 (670)
Q Consensus 636 ~ 636 (670)
+
T Consensus 622 ~ 622 (625)
T KOG1707|consen 622 K 622 (625)
T ss_pred h
Confidence 4
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=350.41 Aligned_cols=329 Identities=20% Similarity=0.190 Sum_probs=246.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHHhc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK 81 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~ 81 (670)
..|+|||+||||||||+|||++.+ ++++.|+++.. ++.....+.+..|.++||+|.+... .+...++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRD-r~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRD-RIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccC-CccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 679999999999999999999998 56667875433 3566677778889999999987432 22347889
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+||++|||+|....-+-.+ +.+.+.+++. ++|+|||+||+|.... .....+.+...++ .++.+||.||
T Consensus 83 eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~Hg 150 (444)
T COG1160 83 EADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEHG 150 (444)
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhhc
Confidence 9999999999776555444 4588888855 7999999999997632 2233344445554 6999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~ 241 (670)
.|+.+|++.+.+.+. +...
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~------------------------------------------------------------ 169 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEE------------------------------------------------------------ 169 (444)
T ss_pred cCHHHHHHHHHhhcC-Cccc------------------------------------------------------------
Confidence 999999998877643 1100
Q ss_pred HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (670)
Q Consensus 242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~ 321 (670)
.+
T Consensus 170 ------------------------------------------------------~~------------------------ 171 (444)
T COG1160 170 ------------------------------------------------------EE------------------------ 171 (444)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (670)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (670)
.
T Consensus 172 --------------------------------------~----------------------------------------- 172 (444)
T COG1160 172 --------------------------------------E----------------------------------------- 172 (444)
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEec
Q 005908 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQE 479 (670)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~ 479 (670)
.....++||+|+|+||||||||+|+|+++++..+++ +||++.+.. .+..+ ..++.++||
T Consensus 173 ----------------~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~-~~e~~--~~~~~liDT 233 (444)
T COG1160 173 ----------------EEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDI-EFERD--GRKYVLIDT 233 (444)
T ss_pred ----------------cccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceee-eEEEC--CeEEEEEEC
Confidence 000245899999999999999999999999999887 577765553 33443 356677899
Q ss_pred CCh---------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908 480 IPE---------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (670)
Q Consensus 480 ~g~---------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~ 550 (670)
+|- -++.++.++...+..+|++++|+|++.+.+ ++..+....+.+. ++++++|.||||+.++..
T Consensus 234 AGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~ 306 (444)
T COG1160 234 AGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-EQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDE 306 (444)
T ss_pred CCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-HHHHHHHHHHHHc------CCCeEEEEEccccCCchh
Confidence 983 133345568889999999999999999976 4445555555554 799999999999987521
Q ss_pred c-----HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCC
Q 005908 551 A-----VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET 598 (670)
Q Consensus 551 ~-----~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~ 598 (670)
. .++++.....+++.|++++||++| ++.++|+.+.+....+..+++++
T Consensus 307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts 360 (444)
T COG1160 307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTS 360 (444)
T ss_pred hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence 1 334444445566778999999999 99999999999998877776554
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=4.1e-39 Score=351.62 Aligned_cols=329 Identities=21% Similarity=0.175 Sum_probs=228.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL 80 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 80 (670)
...+|+|+|++|||||||+|+|++..+. ...+++. ...........+..+.+|||||++. +...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT-~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVT-RDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCC-EeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3478999999999999999999988743 2344422 1223334445667899999999863 223345688
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+.||++|+|||+++..++... .|...++.. ++|+++|+||+|+..... +..+.+...++ .+++|||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcCC
Confidence 999999999999988776542 477777765 899999999999864311 11222233333 468999999
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR 240 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~ 240 (670)
|.||+++|+.+.+.+......
T Consensus 184 g~gi~eL~~~i~~~l~~~~~~----------------------------------------------------------- 204 (472)
T PRK03003 184 GRGVGDLLDAVLAALPEVPRV----------------------------------------------------------- 204 (472)
T ss_pred CCCcHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence 999999999887653210000
Q ss_pred HHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHH
Q 005908 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG 320 (670)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~ 320 (670)
.+
T Consensus 205 -------------------------------------------------------~~----------------------- 206 (472)
T PRK03003 205 -------------------------------------------------------GS----------------------- 206 (472)
T ss_pred -------------------------------------------------------cc-----------------------
Confidence 00
Q ss_pred hhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCCh
Q 005908 321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP 400 (670)
Q Consensus 321 ~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~ 400 (670)
T Consensus 207 -------------------------------------------------------------------------------- 206 (472)
T PRK03003 207 -------------------------------------------------------------------------------- 206 (472)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEec
Q 005908 401 AAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQE 479 (670)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~ 479 (670)
.....++|+|+|++|||||||+|+|++.++..++. ++++.+.....+...| ..+.+|||
T Consensus 207 ------------------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DT 266 (472)
T PRK03003 207 ------------------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDT 266 (472)
T ss_pred ------------------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEEC
Confidence 00123799999999999999999999988754433 3333333334455553 34568999
Q ss_pred CCh----------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908 480 IPE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 480 ~g~----------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~ 549 (670)
+|. +.+..+ ++..+++.+|++++|+|++++.+++... ++..+... ++|+|+|+||+|+.+..
T Consensus 267 aG~~~~~~~~~~~e~~~~~-~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~------~~piIiV~NK~Dl~~~~ 338 (472)
T PRK03003 267 AGLRRRVKQASGHEYYASL-RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA------GRALVLAFNKWDLVDED 338 (472)
T ss_pred CCccccccccchHHHHHHH-HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChh
Confidence 994 333222 2445789999999999999998877664 44444432 79999999999997632
Q ss_pred ccHHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCC
Q 005908 550 MAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE 597 (670)
Q Consensus 550 ~~~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~ 597 (670)
......+++.+. ....|++++||++| |++++|+.+.+.+.....++++
T Consensus 339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t 390 (472)
T PRK03003 339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPT 390 (472)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence 211111222222 33457999999999 9999999999999887776654
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=4.3e-36 Score=327.04 Aligned_cols=326 Identities=17% Similarity=0.187 Sum_probs=224.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHhccC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKRA 83 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~a 83 (670)
+|+|+|++|||||||+|+|++.+. ..+.+++.... ........+..+.+|||||... +......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~-~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR-KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCc-eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999998773 34455533222 2334445677899999999742 334455788999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
|++++|+|.++..+.... .+...+++. ++|+++|+||+|+...... ... ...++ +.+++++||++|.|
T Consensus 80 d~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~~------~~~-~~~lg-~~~~~~vSa~~g~g 147 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDAV------AAE-FYSLG-FGEPIPISAEHGRG 147 (429)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccccc------HHH-HHhcC-CCCeEEEeCCcCCC
Confidence 999999999876555443 367777765 7999999999998754322 111 22333 23699999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHh
Q 005908 164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQ 243 (670)
Q Consensus 164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~ 243 (670)
+.++++.+.+.+.....
T Consensus 148 v~~ll~~i~~~l~~~~~--------------------------------------------------------------- 164 (429)
T TIGR03594 148 IGDLLDAILELLPEEEE--------------------------------------------------------------- 164 (429)
T ss_pred hHHHHHHHHHhcCcccc---------------------------------------------------------------
Confidence 99999877654311000
Q ss_pred hhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhh
Q 005908 244 EKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFG 323 (670)
Q Consensus 244 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~ 323 (670)
+
T Consensus 165 -----------------------------------------------------~-------------------------- 165 (429)
T TIGR03594 165 -----------------------------------------------------E-------------------------- 165 (429)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred hhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChHHH
Q 005908 324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAA 403 (670)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~~~ 403 (670)
T Consensus 166 -------------------------------------------------------------------------------- 165 (429)
T TIGR03594 166 -------------------------------------------------------------------------------- 165 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCC
Q 005908 404 LRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIP 481 (670)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g 481 (670)
.......++|+++|.+|||||||+|+|++.++...++ +|+.+... ..+...| ..+.+||++|
T Consensus 166 -------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~-~~~~~~~--~~~~liDT~G 229 (429)
T TIGR03594 166 -------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID-IPFERNG--KKYLLIDTAG 229 (429)
T ss_pred -------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe-EEEEECC--cEEEEEECCC
Confidence 0001234799999999999999999999987655443 34443332 3344443 3677899999
Q ss_pred hhhHh---------hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-
Q 005908 482 EEGVK---------KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA- 551 (670)
Q Consensus 482 ~~~~~---------~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~- 551 (670)
..... ...+...+++.+|++++|+|++++.+.+.. .+...+... ++|+++|+||+|+.+....
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~ 302 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA------GKALVIVVNKWDLVKDEKTR 302 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEECcccCCCHHHH
Confidence 53221 122345678999999999999998776654 344444433 6999999999999832222
Q ss_pred HHHHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCC
Q 005908 552 VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE 597 (670)
Q Consensus 552 ~~~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~ 597 (670)
.+....+...+ +..+++++||++| |++++|+++.+.+..+..+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred HHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 22222333333 3457999999999 9999999999998776665543
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.7e-35 Score=337.72 Aligned_cols=333 Identities=21% Similarity=0.177 Sum_probs=226.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 79 (670)
....+|+|+|++|||||||+|+|++.+. ....+++. ..+........+..+.+|||||++. +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT-~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT-RDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCee-EEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3457899999999999999999998764 33344432 1223334445677899999999763 22334567
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++.+|++|+|+|+++..+. ....|...++.. ++|+++|+||+|+..... .....+...++ .++++||+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~-----~~~~~~~lg~~---~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTS--TDERIVRMLRRA--GKPVVLAVNKIDDQASEY-----DAAEFWKLGLG---EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCCCCH--HHHHHHHHHHhc--CCCEEEEEECcccccchh-----hHHHHHHcCCC---CeEEEECC
Confidence 8999999999998764333 233477888765 899999999999864211 11222223333 46899999
Q ss_pred cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVK 239 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~ 239 (670)
+|.||.++++.+.+.+......
T Consensus 420 ~g~GI~eLl~~i~~~l~~~~~~---------------------------------------------------------- 441 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVAEKT---------------------------------------------------------- 441 (712)
T ss_pred CCCCchHHHHHHHHhccccccc----------------------------------------------------------
Confidence 9999999999887653210000
Q ss_pred HHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHH
Q 005908 240 RVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLR 319 (670)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~ 319 (670)
...++
T Consensus 442 -----------------------------------------------------~~a~~---------------------- 446 (712)
T PRK09518 442 -----------------------------------------------------SGFLT---------------------- 446 (712)
T ss_pred -----------------------------------------------------ccccC----------------------
Confidence 00000
Q ss_pred HhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCC
Q 005908 320 GIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD 399 (670)
Q Consensus 320 ~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~ 399 (670)
T Consensus 447 -------------------------------------------------------------------------------- 446 (712)
T PRK09518 447 -------------------------------------------------------------------------------- 446 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEE
Q 005908 400 PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLIL 477 (670)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~ 477 (670)
....++|+++|++|||||||+|+|++.++..++. +|+.+.+ ...+...|. .+.+|
T Consensus 447 --------------------~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~-~~~~~~~~~--~~~li 503 (712)
T PRK09518 447 --------------------PSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPV-DEIVEIDGE--DWLFI 503 (712)
T ss_pred --------------------CCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcc-eeEEEECCC--EEEEE
Confidence 0123699999999999999999999998654333 4554433 344555533 45589
Q ss_pred ecCChh---------hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 478 QEIPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 478 d~~g~~---------~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
||+|.. ++....+...+++.+|++++|+|++++.+++... ++..+... ++|+++|+||+|+.+.
T Consensus 504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMDE 576 (712)
T ss_pred ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCCh
Confidence 999942 2222222456689999999999999998877654 44444433 6999999999999763
Q ss_pred cccHHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCC
Q 005908 549 TMAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET 598 (670)
Q Consensus 549 ~~~~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~ 598 (670)
.......+.+... ....+++++||++| |++++++.+.+.+..+..++++.
T Consensus 577 ~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~ 630 (712)
T PRK09518 577 FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTG 630 (712)
T ss_pred hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence 2211111222222 23446899999999 99999999999998877766553
No 6
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=4.1e-35 Score=319.60 Aligned_cols=325 Identities=16% Similarity=0.148 Sum_probs=220.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHHhcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR 82 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 82 (670)
.+|+|+|++|||||||+|+|++.+. ....+++.... ........+..+.+|||||+.. .......+++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR-IYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-eEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999998873 44455433222 2223444568899999999986 22234467899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
+|++|+|+|++++.+..+. .+...+++. ++|+++|+||+|+.... .....+ ..++ ...++++||++|.
T Consensus 81 ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~------~~~~~~-~~lg-~~~~~~iSa~~g~ 148 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE------ADAYEF-YSLG-LGEPYPISAEHGR 148 (435)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch------hhHHHH-HhcC-CCCCEEEEeeCCC
Confidence 9999999999876554432 255566665 89999999999975421 111222 2333 2258999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 005908 163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l 242 (670)
|++++++.+.......
T Consensus 149 gv~~l~~~I~~~~~~~---------------------------------------------------------------- 164 (435)
T PRK00093 149 GIGDLLDAILEELPEE---------------------------------------------------------------- 164 (435)
T ss_pred CHHHHHHHHHhhCCcc----------------------------------------------------------------
Confidence 9999998776510000
Q ss_pred hhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 005908 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322 (670)
Q Consensus 243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f 322 (670)
+ ..
T Consensus 165 --------------------------------------------------~--~~------------------------- 167 (435)
T PRK00093 165 --------------------------------------------------E--EE------------------------- 167 (435)
T ss_pred --------------------------------------------------c--cc-------------------------
Confidence 0 00
Q ss_pred hhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChHH
Q 005908 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA 402 (670)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~~ 402 (670)
T Consensus 168 -------------------------------------------------------------------------------- 167 (435)
T PRK00093 168 -------------------------------------------------------------------------------- 167 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecC
Q 005908 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEI 480 (670)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~ 480 (670)
......++|+|+|.+|||||||+|+|++.+...++. +|+.+... ..+... ...+.++|++
T Consensus 168 ---------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~-~~~~~~--~~~~~lvDT~ 229 (435)
T PRK00093 168 ---------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID-TPFERD--GQKYTLIDTA 229 (435)
T ss_pred ---------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE-EEEEEC--CeeEEEEECC
Confidence 000124899999999999999999999987655443 34433322 233333 3456789999
Q ss_pred Chhh---------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc
Q 005908 481 PEEG---------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 551 (670)
Q Consensus 481 g~~~---------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~ 551 (670)
|... .....++..+++.+|++|+|+|++++.+.+.. .+...+... ++|+++|+||+|+.+....
T Consensus 230 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~ 302 (435)
T PRK00093 230 GIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA------GRALVIVVNKWDLVDEKTM 302 (435)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCcEEEEEECccCCCHHHH
Confidence 9421 11222345678999999999999998776544 344444433 6999999999999853322
Q ss_pred HHHHHHHHHH---hCCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908 552 VQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP 596 (670)
Q Consensus 552 ~~~~~~~~~~---~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~ 596 (670)
.+..+++... .+..|++++||++| |++++++.+.+.+..+..+++
T Consensus 303 ~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~ 351 (435)
T PRK00093 303 EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRIS 351 (435)
T ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence 2233333333 23457999999999 999999999998876665544
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-31 Score=240.12 Aligned_cols=170 Identities=25% Similarity=0.408 Sum_probs=158.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.++-+||+|+|++|||||+|+.||.++.|...+..|++.++..+.+.+.|...++.+|||+||++|+++ +.++|++||
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--t~syYR~ah 83 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH 83 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--hHhhccCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
+||+|||+++.+||+.+..|+.++.++... +.|.++||||+|+.+.+.. .+++++|+..+++++++++|||++ ||
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 999999999999999999999999999876 5899999999999986655 888899999999988999999999 99
Q ss_pred HHHHHHHHHHHhCCCCC
Q 005908 578 NNVFSRIIWAAEHPHLN 594 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~~~ 594 (670)
++.|..|...+......
T Consensus 161 e~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGL 177 (205)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999988655443
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=228.50 Aligned_cols=166 Identities=23% Similarity=0.355 Sum_probs=153.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|..|||||||+-||..+.|.....+|++..+..+.+.+++...++.||||+|+++|.++ .+.||++|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--apMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--APMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--ccceecCCcEE
Confidence 4589999999999999999999999999988899999999999999988889999999999999999 89999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
|+|||+++.+||..++.|++++.+..++ ++-+.+||||+||.+ +++..++++.+++..++. ++++||||| ||++
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~---~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASP---NIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVNE 157 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCC---CeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHHH
Confidence 9999999999999999999999988763 577888999999998 455599999999999988 999999999 9999
Q ss_pred HHHHHHHHHhCCCC
Q 005908 580 VFSRIIWAAEHPHL 593 (670)
Q Consensus 580 l~~~l~~~~~~~~~ 593 (670)
+|..|.+.+.....
T Consensus 158 if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHhccCccc
Confidence 99999999875443
No 9
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-29 Score=227.99 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=147.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
.....+||+|+|++|||||+|+.||..+.|.+.+-.+.+... ....++++.++++||||+||++|+.++..+|++||+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 445679999999999999999999999999998666555544 567777889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
||+|||+++.+||+.+.. |+.+++++. .++|.+|||||+|+.+.+.+ + .+..+.++..++. ..++|+|||++.||
T Consensus 85 ii~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~-~~~a~~fa~~~~~-~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEKRVV-S-TEEAQEFADELGI-PIFLETSAKDSTNV 160 (205)
T ss_pred EEEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhheec-C-HHHHHHHHHhcCC-cceeecccCCccCH
Confidence 999999999999999995 999999876 46799999999999999888 4 4555888888874 23999999999999
Q ss_pred hHHHHHHHHHHcCCCC
Q 005908 165 PDVFYYAQKAVLHPTA 180 (670)
Q Consensus 165 ~~l~~~i~~~~~~~~~ 180 (670)
++.|..+...+.....
T Consensus 161 e~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999988765443
No 10
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-29 Score=227.89 Aligned_cols=166 Identities=21% Similarity=0.285 Sum_probs=143.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|+.|||||||+-|+..++|.+. .|++..-+. +.+.++...+++.||||+|+++|.++.++|+|+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999997 555444433 55667777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||+++.+||..+++ |.++|++.. +++-+.|||||+||.+.+.+ .. +....++...+. .|+|+|||+|.||++
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~~-~ea~~yAe~~gl--l~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV-EF-EEAQAYAESQGL--LFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc-cH-HHHHHHHHhcCC--EEEEEecccccCHHH
Confidence 9999999999999995 999998765 45667789999999998888 44 456788888774 699999999999999
Q ss_pred HHHHHHHHHcCCCC
Q 005908 167 VFYYAQKAVLHPTA 180 (670)
Q Consensus 167 l~~~i~~~~~~~~~ 180 (670)
+|..|.+.++....
T Consensus 158 if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHhccCccc
Confidence 99999999876543
No 11
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.5e-29 Score=228.90 Aligned_cols=166 Identities=20% Similarity=0.360 Sum_probs=156.4
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
...+.+||+++|++|||||+++.+|..+.|...+..|++.++..+.+.++|...++.+|||+|++++..+ +..|++.|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--HHHHHhhc
Confidence 4567899999999999999999999999999999899999999999999998899999999999999999 99999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
+++++|||+++..||+++..|++.+.++.+. +.|++|||||+|+..+++ ..+..+.+|.++|+. ++++|||+| |
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~N 161 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFN 161 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCC
Confidence 9999999999999999999999999998876 699999999999998554 489999999999998 999999999 9
Q ss_pred hHHHHHHHHHHHhC
Q 005908 577 LNNVFSRIIWAAEH 590 (670)
Q Consensus 577 v~~l~~~l~~~~~~ 590 (670)
|++.|..+++.+..
T Consensus 162 I~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 162 IEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 12
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-28 Score=218.82 Aligned_cols=163 Identities=19% Similarity=0.318 Sum_probs=152.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+|++++|+.|||||+|+.+|+...|.++++.|++.++-.+.+.+++...++.+|||+|++.++++ +..+|+.|.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--~~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--TRSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--HHHHhccCcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||+++++||..+..|+.++.++... +..++++|||+||..++.. .++.+.||+++++. ++++||+++ ||+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~---NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VE 157 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNE---NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVE 157 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCC---CcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHH
Confidence 99999999999999999999999988643 7999999999999976544 89999999999998 899999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|......+.
T Consensus 158 EaF~nta~~Iy 168 (216)
T KOG0098|consen 158 EAFINTAKEIY 168 (216)
T ss_pred HHHHHHHHHHH
Confidence 99998887763
No 13
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-28 Score=220.05 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=154.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
-+.+|++++|+.+|||||||+||+.+.|...|.+|++.++..+.+.+.|....+.+|||+|||+|+++ ...|++++.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl--ipsY~Rds~v 97 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSSV 97 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh--hhhhccCCeE
Confidence 34599999999999999999999999999999999999999999999988899999999999999999 8999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||+++..||++..+|+..+......+ +.-+++||||.||.++++. .++.+..+++++.. |+++||+.| ||.
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk 174 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVK 174 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHH
Confidence 999999999999999999999999887654 5778899999999987655 78888999999986 999999999 999
Q ss_pred HHHHHHHHHHhCCC
Q 005908 579 NVFSRIIWAAEHPH 592 (670)
Q Consensus 579 ~l~~~l~~~~~~~~ 592 (670)
++|..|...++...
T Consensus 175 ~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 175 QLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHhccCcc
Confidence 99999988886543
No 14
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=213.11 Aligned_cols=165 Identities=19% Similarity=0.301 Sum_probs=153.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||.++|.+|||||||+-+|+...|.+..+.|++.++.++.+.++|...++-||||+|+++|+.+ +..|+++|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--TpSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--TPSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--CHhHhccCce
Confidence 45699999999999999999999999999998888999999999999999999999999999999999 9999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++.+++|..+..|++++..+.... ++-.++|+||+|...++ +..++...|++++++. ++++|||+. ||+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQ 163 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHH
Confidence 999999999999999999999999998765 67789999999988544 4488999999999998 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
..|+++++.+.+
T Consensus 164 ~~FeelveKIi~ 175 (209)
T KOG0080|consen 164 CCFEELVEKIIE 175 (209)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 15
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=224.46 Aligned_cols=172 Identities=16% Similarity=0.256 Sum_probs=152.1
Q ss_pred CCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHH
Q 005908 2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE 79 (670)
Q Consensus 2 ~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 79 (670)
+.+........+||+++|++|||||+|+.+|..+.|...+..+.+... ..+..++..+++++|||+|+++|..++..|
T Consensus 2 ~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sY 81 (207)
T KOG0078|consen 2 SAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAY 81 (207)
T ss_pred CccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHH
Confidence 445555777889999999999999999999999999888665555444 455666778999999999999999999999
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+++|+++++|||+++..||+++.. |++.++++.+ ++|++|||||+|+...+++ ..+..+.++.++|. .|+|+||
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~--~F~EtSA 156 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGI--KFFETSA 156 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCC--eEEEccc
Confidence 999999999999999999999996 9999998765 8999999999999998888 56778999999984 7999999
Q ss_pred ccCCCchHHHHHHHHHHcCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~ 178 (670)
|+|.||.+.|..+.+.++..
T Consensus 157 k~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 16
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.7e-28 Score=212.54 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=147.5
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
......+||+++|.+|||||||+.+|+.+.|.+..|.+.+... ..+.+++..+++.||||+|+++|+.++++|+++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 4455679999999999999999999999999998777565544 56677888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
++|+|||++.+++|.++. .|++++..+. +++..++||||+|...++.+ ..++...++++++. -|+||||++.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V--~reEG~kfAr~h~~--LFiE~SAkt~~ 160 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVV--DREEGLKFARKHRC--LFIECSAKTRE 160 (209)
T ss_pred eeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccc--cHHHHHHHHHhhCc--EEEEcchhhhc
Confidence 999999999999999996 6999998874 56777899999998887777 45566788899886 49999999999
Q ss_pred CchHHHHHHHHHHcCCC
Q 005908 163 QVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~~ 179 (670)
||+..|++++.++..-+
T Consensus 161 ~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETP 177 (209)
T ss_pred cHHHHHHHHHHHHhcCc
Confidence 99999999999887543
No 17
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=219.76 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=144.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+++|+.+|||||||+|++.+.|..++..+.+... ..+.+.+..+++++|||+||++|..+.+.|+++++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 44569999999999999999999999999999777666655 4455667789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-C-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
|+|||+++..||++.. +|++.+++.. . +.-++|||||.||.+.+++ . .++.+..+++++. .|+++||+.|.||
T Consensus 99 viVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s-~eEg~~kAkel~a--~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-S-IEEGERKAKELNA--EFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhh-h-HHHHHHHHHHhCc--EEEEecccCCCCH
Confidence 9999999999999998 5999997753 3 4677899999999999988 4 4455688888885 6999999999999
Q ss_pred hHHHHHHHHHHcCCCC
Q 005908 165 PDVFYYAQKAVLHPTA 180 (670)
Q Consensus 165 ~~l~~~i~~~~~~~~~ 180 (670)
.++|..|...++....
T Consensus 174 k~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 174 KQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHHhccCccc
Confidence 9999998887765543
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=4e-28 Score=216.09 Aligned_cols=168 Identities=18% Similarity=0.324 Sum_probs=153.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|++|||||||+|++++.+|...+..|++.++..+.+.+++....+.||||+|+++|.++ ....++++|+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsL--g~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSL--GVAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhc--ccceecCCce
Confidence 56799999999999999999999999999999999999999999999977788999999999999999 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCC-CCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSG-YGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~-~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+++|||++++.||+.+..|.+++..+..... ..-|+||+|||+|+.. +.+....+++||+..+-.|||++|||.+
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999988776432 4689999999999976 4556899999999998878999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005908 576 DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~ 590 (670)
||++.|+.+.+.+..
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998764
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=3.8e-28 Score=207.31 Aligned_cols=162 Identities=26% Similarity=0.409 Sum_probs=152.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+-++.+|+|+||||||||+.+|....|...|..|++.++.+++++++|...++.|||++|+++|+.+ +..+++..+++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--tstyyrgthgv 84 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--TSTYYRGTHGV 84 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--HHHHccCCceE
Confidence 3478899999999999999999999999999899999999999999999999999999999999999 88999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||+++++||.+..+|++++...+. ..|-++||||.|..+++.. .++++.++..+++. .|++|||.+ |++.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEA 159 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchH
Confidence 999999999999999999999999887 5899999999999987766 88999999999998 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|.-|.++..+
T Consensus 160 mF~cit~qvl~ 170 (198)
T KOG0079|consen 160 MFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=1.8e-27 Score=226.57 Aligned_cols=164 Identities=26% Similarity=0.380 Sum_probs=138.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
...+||+++|++|||||||+++|+.+.|...+.++. ........++...+.+.+|||+|++++..+.+.+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 457899999999999999999999999887744433 3333445566678899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|||++++.||+++...|.+.+++..++.|++|||||+|+.+. +.+ ..+..+.++++++. .+|+||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~E~ 159 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIEC 159 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCC--CHHHHHHHHHHcCC-CEEEEC
Confidence 999999999999855799999888789999999999999642 223 34567888888873 379999
Q ss_pred CcccCCC-chHHHHHHHHHHc
Q 005908 157 SATTMIQ-VPDVFYYAQKAVL 176 (670)
Q Consensus 157 SA~~~~g-i~~l~~~i~~~~~ 176 (670)
||++|.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 21
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.2e-28 Score=214.46 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=146.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+|++++|+.|||||+|+.||+.++|.+..+.+.+... ..+.++...++++||||+|++.|.+.+..||+.|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 44679999999999999999999999999888666555544 4556778899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||+++++||..+.. |+..++.+ .++..++|+|||+||...+.+ .+++.+.++++.+- .++++||+++.||+
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VE 157 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVE 157 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHH
Confidence 99999999999999996 99999887 489999999999999998877 66778999999874 58999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
|.|......++.
T Consensus 158 EaF~nta~~Iy~ 169 (216)
T KOG0098|consen 158 EAFINTAKEIYR 169 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999988887754
No 22
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=2.2e-27 Score=224.53 Aligned_cols=163 Identities=27% Similarity=0.425 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+.+++.+.|...+ |++.........++...+++.+|||+|++++..+...+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999998764 44433333444555667999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC----------CccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH----------NATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+++++||+++...|+..++...++.|++|||||+|+.+.+ .+ ..+....+++.++. .+++||||++|
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~E~SAk~~ 158 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPI--TTAQGEELRKQIGA-AAYIECSSKTQ 158 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCC--CHHHHHHHHHHcCC-CEEEECCCCcc
Confidence 9999999998546999998777789999999999997643 23 34556778877763 36999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 005908 162 IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (670)
.||+++|+.+++.+..+
T Consensus 159 ~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 159 QNVKAVFDAAIKVVLQP 175 (176)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 99999999999987544
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=6e-27 Score=225.79 Aligned_cols=168 Identities=26% Similarity=0.389 Sum_probs=137.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
..+||+++|++|||||||+++++.+.|...+.++.+. ......++...+.+.+|||+|++++..+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4689999999999999999999999987764443333 333344566678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
||++++.||+++...|...++...+++|++|||||+|+.+.... ....+..+.+++.++. .++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCC
Confidence 99999999999976799888776678999999999999754210 0123445667777663 379999999
Q ss_pred cCCCchHHHHHHHHHHcCCC
Q 005908 160 TMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~ 179 (670)
+|.||+++|+.+++.+..+.
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887654
No 24
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.5e-27 Score=222.91 Aligned_cols=162 Identities=28% Similarity=0.385 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++||+++|++|||||||+++|+++.|...+.++. ........++...+.+.+|||+|++.+..+.+.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4799999999999999999999999877744433 333334455667789999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
|+++++||+++...|+..+++..++.|++|||||+|+.+. +.+ ..+....++++++. .+|+||||
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~-~~~~E~SA 157 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGA-EIYLECSA 157 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCC-CEEEECcc
Confidence 9999999999755799999888889999999999999642 223 34567888888873 36999999
Q ss_pred ccCCC-chHHHHHHHHHHc
Q 005908 159 TTMIQ-VPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~~~g-i~~l~~~i~~~~~ 176 (670)
++|+| |+++|+.+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 25
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=1.1e-26 Score=222.18 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|++|||||||+++|.++.|...++++.+... ..+.++...+.+.+|||+|++++..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999888766544333222 23444556789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|||++++.||+++. .|++.+....++.|+||||||+|+...+.+ . .+.++.+++..+ .++++|||++|.||+++
T Consensus 84 lVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~-~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 84 LVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKRQV-A-TEQAQAYAERNG--MTFFEVSPLCNFNITES 158 (189)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhccCC-C-HHHHHHHHHHcC--CEEEEecCCCCCCHHHH
Confidence 999999999999997 599999887789999999999999877666 3 455678887776 37999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|+++.+.+...
T Consensus 159 F~~l~~~i~~~ 169 (189)
T cd04121 159 FTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 26
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=211.94 Aligned_cols=170 Identities=21% Similarity=0.287 Sum_probs=143.6
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
+...+.-+||+|+|++|||||||+|++++++|...+..+.+... +.+.++...+.++||||+|+++|.++.-.++++|
T Consensus 3 ~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga 82 (210)
T KOG0394|consen 3 SLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA 82 (210)
T ss_pred CcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence 34456679999999999999999999999998887554444433 5556667788999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhc-C----CCCCEEEEEeCCCCCCC--CCccchhhhhhHHHHHhccCCeEEEe
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGD--HNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~----~~~pvilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|..++|||++++.||+.+.. |.+++-.. . ...|+||+|||+|+... +++ .......++...+.+ +|||+
T Consensus 83 DcCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V--S~~~Aq~WC~s~gni-pyfEt 158 (210)
T KOG0394|consen 83 DCCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV--SEKKAQTWCKSKGNI-PYFET 158 (210)
T ss_pred ceEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee--eHHHHHHHHHhcCCc-eeEEe
Confidence 99999999999999999986 98887443 2 26899999999999763 455 456678899998875 89999
Q ss_pred CcccCCCchHHHHHHHHHHcCCC
Q 005908 157 SATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
|||.+.||.+.|+.+.+.++..+
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999887654
No 27
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=2.3e-26 Score=220.07 Aligned_cols=171 Identities=18% Similarity=0.286 Sum_probs=148.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+++|..|||||||+++|.++.+...+.++.+.++....+..++....+.+||++|++.+..+ +..+++++|+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l--~~~~~~~ad~ 81 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI--FRSYSRGAQG 81 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhcCCCE
Confidence 35699999999999999999999998887777777777777777888866778889999999999988 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++++.||+.+..|+.++..... +.|+||||||+|+...+ ...++++.+++..++. ++++||++| ||+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~~----~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~ 156 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHAP----GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNIT 156 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence 9999999999999999999999977643 69999999999997643 3477899999999876 999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCCCC
Q 005908 579 NVFSRIIWAAEHPHLNIPET 598 (670)
Q Consensus 579 ~l~~~l~~~~~~~~~~~~~~ 598 (670)
++|+++++.+...+.++|..
T Consensus 157 ~~F~~l~~~i~~~~~~~~~~ 176 (189)
T cd04121 157 ESFTELARIVLMRHGRPPQS 176 (189)
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 99999999887666555443
No 28
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.6e-26 Score=226.79 Aligned_cols=167 Identities=26% Similarity=0.327 Sum_probs=139.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
....+||+++|++|||||||+++|+++.|...+ |++.........++...+.+.||||+|++.|..+.+.++++||++|
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 346789999999999999999999999988774 4443344444556677899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+|||++++.||+.+...|+..++...++.|+||||||+|+... +.+ ..+..+.++++++. ..|+|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~-~~~~E 166 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGA-EVYLE 166 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCC-CEEEE
Confidence 9999999999998645699999887778999999999999642 334 34567888888873 26999
Q ss_pred eCcccCC-CchHHHHHHHHHHcCC
Q 005908 156 CSATTMI-QVPDVFYYAQKAVLHP 178 (670)
Q Consensus 156 ~SA~~~~-gi~~l~~~i~~~~~~~ 178 (670)
|||++|. ||+++|+.+++.++..
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999987654
No 29
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.5e-27 Score=213.29 Aligned_cols=165 Identities=21% Similarity=0.336 Sum_probs=153.8
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
...+.+||+++|+++||||-|+.||...+|...+.+|++..+....+.++|...+..||||+|+++|+++ +..||+.|
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--tSaYYrgA 87 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--TSAYYRGA 87 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--cchhhccc
Confidence 3578899999999999999999999999999999999999999999999998899999999999999999 89999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
.++++|||++.+.+|+.+.+|+.+++.+... ++++++||||+||.+.+. ..++++.+++..++. ++++||..+ |
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tN 163 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATN 163 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEeccccccc
Confidence 9999999999999999999999999998765 699999999999998544 488999999999988 999999999 9
Q ss_pred hHHHHHHHHHHHh
Q 005908 577 LNNVFSRIIWAAE 589 (670)
Q Consensus 577 v~~l~~~l~~~~~ 589 (670)
|++.|+.++..+-
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888763
No 30
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=1.9e-26 Score=222.69 Aligned_cols=162 Identities=19% Similarity=0.315 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+.|+++|++|||||||+++|+.+.|...++++.+... ....+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999887555443322 33455556799999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|+++++||+++. .|+..++... .+.|++|||||+|+...+.+ ..+..+.++++... ..+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--SRQQGEKFAQQITG-MRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHH
Confidence 999999999998 4999887653 57999999999999876665 33445666666533 3699999999999999999
Q ss_pred HHHHHHcCC
Q 005908 170 YAQKAVLHP 178 (670)
Q Consensus 170 ~i~~~~~~~ 178 (670)
++++.+...
T Consensus 157 ~l~~~~~~~ 165 (202)
T cd04120 157 KLVDDILKK 165 (202)
T ss_pred HHHHHHHHh
Confidence 999887643
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9e-27 Score=198.79 Aligned_cols=165 Identities=19% Similarity=0.349 Sum_probs=153.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
-.+.+|+.|+|.+.||||||+.++.+..|.+.+..|.+.++.++++--...+.++.+|||+|+++++.+ +..++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--TTayyRgam 95 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--TTAYYRGAM 95 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--HHHHhhccc
Confidence 467799999999999999999999999999988889999999998877767889999999999999999 899999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|++||+++.+||..+..|...+..+... +.|+|+|+||||+..++.. .+..+.+++++|+. +|++|||.+ ||
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinV 171 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINV 171 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccH
Confidence 999999999999999999999999988765 6999999999999987766 88899999999997 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+.+|+.+...+..
T Consensus 172 k~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 172 KQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=2e-26 Score=218.84 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+++|+.+.|...+.++.+ .......+....+.+.||||+|++++...+..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 7999999999999999999999999766444333 333334455556889999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++++++|+++.+.|...++...+++|++|||||+|+.+. +.+ ..+....++++++. ..+++|||+
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~SA~ 158 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI--TPETGEKLARDLKA-VKYVECSAL 158 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCc--CHHHHHHHHHHhCC-cEEEEecCC
Confidence 999999999976799999877778999999999998654 222 23445667766653 379999999
Q ss_pred cCCCchHHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKAV 175 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~ 175 (670)
+|.||+++|+.+++.+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=3.2e-26 Score=216.67 Aligned_cols=161 Identities=19% Similarity=0.382 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+.+++.+.|...+.+|.+..+. ..+..+|....+.+||++|++++..+ ...+++++|++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcccccc--chhhcCCCcEEEE
Confidence 69999999999999999999999998888888887664 44566766778899999999999988 7789999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------ccHHHHHHHHHHhCCCCcEEee
Q 005908 504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS 571 (670)
|||++++.||+.+ ..|+..+..... +.|++|||||+|+.+.+ ...++++.+++.++..++++||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 154 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAP----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS 154 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 689999877643 69999999999996642 4478889999999876699999
Q ss_pred cccC-ChHHHHHHHHHHHhCC
Q 005908 572 MKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~~ 591 (670)
|++| ||+++|+.+++.+.+|
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 9999 9999999999987543
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=5.1e-26 Score=222.23 Aligned_cols=169 Identities=26% Similarity=0.362 Sum_probs=139.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++||+|||++|||||||+++|.++.|...+ |++.........++...+.+.||||+|++.|..+.+.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 479999999999999999999999988774 4444444444556667889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC----------ccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
|++++++|+.+...|...++...++.|+||||||+|+..+.. .-...+....+++.++. .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA-VSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC-CEEEEcCCCc
Confidence 999999999997789988888788999999999999965311 00123456778888874 3799999999
Q ss_pred CCC-chHHHHHHHHHHcCCCCC
Q 005908 161 MIQ-VPDVFYYAQKAVLHPTAP 181 (670)
Q Consensus 161 ~~g-i~~l~~~i~~~~~~~~~~ 181 (670)
+.| |+++|+.++...+.+..+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 985 999999999988765543
No 35
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=6.7e-26 Score=218.91 Aligned_cols=161 Identities=17% Similarity=0.355 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
++|+++|.+|||||||+++|..+.|...+.+|++.++..+.+.++|....+.+||++|++++..+ +..+++++|++|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--~~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--HHHHhcCCCEEEE
Confidence 47999999999999999999999998888888888888888888876788899999999999998 7889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHh-CCCCcEEeecccC-ChHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~vSA~~g-~v~~l 580 (670)
|||++++.||+.+..|+..+...... +.|+++|+||+|+...+ ....+.+++++++ ++. +++|||++| ||+++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~ 154 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEI 154 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHH
Confidence 99999999999999999988766432 69999999999997543 3467778888876 554 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|+++++.+..
T Consensus 155 F~~l~~~~~~ 164 (202)
T cd04120 155 FLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 36
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=7.4e-27 Score=199.43 Aligned_cols=161 Identities=23% Similarity=0.269 Sum_probs=142.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
-+|.+|+|++|||||||+.+|..+.|...+.++.+... ..+.+.+..+++.||||+|++.|..++..++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999888666555544 4566778899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
||+++.+||.+.. +|++.++..++..|-+|||||+|..+.+.+ ..+....++.+.+ ..+||+|||.+.|++.+|.
T Consensus 88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mg--ie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMG--IELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcC--chheehhhhhcccchHHHH
Confidence 9999999999998 599999999999999999999999887766 4555688888887 3799999999999999999
Q ss_pred HHHHHHcC
Q 005908 170 YAQKAVLH 177 (670)
Q Consensus 170 ~i~~~~~~ 177 (670)
-|.+.++.
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 99887753
No 37
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=199.85 Aligned_cols=165 Identities=22% Similarity=0.346 Sum_probs=147.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+.++++++|++-||||||+..|..+.+..-++||.+.++..+++.+. |...++.+|||+|+++++++ +..|++++-
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi--tksyyrnsv 83 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--TKSYYRNSV 83 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--HHHHhhccc
Confidence 467999999999999999999999999999999999999887777765 56678999999999999999 999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++|+.||+.+..|.++...+..... .+-+.+||.|+||...++. .++++.+++.+++. ++++||++| ||
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~-k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV 161 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPD-KVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV 161 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCC-eeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence 99999999999999999999999877665220 3445789999999976554 89999999999998 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
++.|+.+.+.+.
T Consensus 162 eEAF~mlaqeIf 173 (213)
T KOG0091|consen 162 EEAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 38
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=9.6e-26 Score=214.75 Aligned_cols=162 Identities=19% Similarity=0.296 Sum_probs=141.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++....+.+||++|++++..+ ...+++++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~--~~~~~~~ad~ 79 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 79 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhh--hhhhcCCCCE
Confidence 35689999999999999999999999998888888876664 45667767778999999999999888 7789999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.||+.+ ..|+..+.+..+ +.|++|||||+||.+ .....++++++++++++.+
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999997 799999987653 689999999999864 1245788999999999756
Q ss_pred cEEeecccC-C-hHHHHHHHHHHHh
Q 005908 567 PIPVSMKSK-D-LNNVFSRIIWAAE 589 (670)
Q Consensus 567 ~~~vSA~~g-~-v~~l~~~l~~~~~ 589 (670)
|++|||++| | |+++|+.+++.+.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHh
Confidence 999999999 9 9999999998643
No 39
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=8.5e-26 Score=214.00 Aligned_cols=162 Identities=17% Similarity=0.311 Sum_probs=134.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.+||+++|++|||||||+++++++.|...+.++.+ .......+.+..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999998766444333 33334455566788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.||+.+.+ |...+.+. .+++|+++|+||+|+.+.+.+ + .+....+++.++ .++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV-T-TEEGRNLAREFN--CPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc-C-HHHHHHHHHHhC--CEEEEEecCCCCCHHHHH
Confidence 9999999999985 88877653 357999999999999876655 3 344567777776 379999999999999999
Q ss_pred HHHHHHHcCC
Q 005908 169 YYAQKAVLHP 178 (670)
Q Consensus 169 ~~i~~~~~~~ 178 (670)
+++++.+...
T Consensus 157 ~~l~~~~~~~ 166 (172)
T cd04141 157 HGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 40
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=7.8e-26 Score=225.37 Aligned_cols=222 Identities=17% Similarity=0.217 Sum_probs=159.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+.|....+.+||++|++.+..+ ...++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAM--RRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHH--HHHHhccCCEEEE
Confidence 4899999999999999999999998877777776 455567777766678889999999888877 6667899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC------CCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGE------DSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~------~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
|||+++++||+.+..|+.++..... ....++|+|+|+||+|+.. .....+++.+++......+++++||++|
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 9999999999999999998876421 0112689999999999975 3334556666655432235999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 005908 576 DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGVPVLLLLYFLHMHTWTCIVLITILHIYSWGCCCGR 655 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (670)
|++++|+.|++.+..+....|..... ..-++.+.+. ..+.+ ..+.- --...++-..+=+|
T Consensus 158 gI~elf~~L~~~~~~p~e~~~~~~~~-~~~~~~~~~~----~~~~~---------~~~~~------~~~~~~~~~~~~~~ 217 (247)
T cd04143 158 NLDEMFRALFSLAKLPNEMSPSLHRK-ISVQYGDALH----KKSRG---------GSRKR------KEGDACGAVAPFAR 217 (247)
T ss_pred CHHHHHHHHHHHhccccccCccccce-eeeeeccccc----ccccc---------ccccc------cCCCcccccccccc
Confidence 99999999999886555433221111 0011111110 00000 00000 12355677778899
Q ss_pred CCccccccchhhc
Q 005908 656 RTGCLSSLCCKKE 668 (670)
Q Consensus 656 ~~~~~~~~~~~~~ 668 (670)
||+.+|||+|+++
T Consensus 218 ~~~~~~~~~~~~~ 230 (247)
T cd04143 218 RPSVHSDLRYIRS 230 (247)
T ss_pred CCCchhhHHHHhc
Confidence 9999999999875
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=1e-25 Score=213.85 Aligned_cols=160 Identities=24% Similarity=0.349 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.+||+++|++|||||||+.+++.+.|...+ |+..........++...+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 479999999999999999999999987764 4333232333445556788999999999999898999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
|++++++|+++...|...++...++.|++|||||+|+.+.+ .+ ..+....++++++. .++++|||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa 157 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLECSA 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCC--CHHHHHHHHHHcCC-cEEEEecc
Confidence 99999999999767999887776789999999999996532 12 34455677777764 37999999
Q ss_pred ccCCCchHHHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQKA 174 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (670)
++|.||+++|+.+.+.
T Consensus 158 ~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 158 LTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccCCHHHHHHHHHHh
Confidence 9999999999988764
No 42
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=2.7e-25 Score=209.59 Aligned_cols=165 Identities=53% Similarity=0.908 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+||+++|++|||||||+++|.++.+....+++.........+....+++.+|||||.+.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999987766655545555555666788999999999988877778888999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 172 (670)
+++.+++.+...|.+.++...+++|+++|+||+|+.+.......++....+...++...++++|||++|.|++++|+.+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 99999999876799989876678999999999999765432112344445555565444799999999999999999999
Q ss_pred HHHcC
Q 005908 173 KAVLH 177 (670)
Q Consensus 173 ~~~~~ 177 (670)
+.+++
T Consensus 161 ~~~~~ 165 (166)
T cd01893 161 KAVLH 165 (166)
T ss_pred HHhcC
Confidence 88765
No 43
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9e-26 Score=193.75 Aligned_cols=165 Identities=21% Similarity=0.358 Sum_probs=151.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.++-+|++++|+.|.|||+|+++|+..++...+..|++.++..+++.+.|...++.|||++|+++|+++ ++.|+++|-
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--tRsYYRGAA 83 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA 83 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--HHHHhcccc
Confidence 456699999999999999999999999999998899999999999999988899999999999999999 999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
+.++|||+++++||+.+..|+..++...+. ++-+|+++||.||.+.++. ..++.+|+++..+. +.++||+|| ||
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~---nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNV 159 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV 159 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCCC---cEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccH
Confidence 999999999999999999999999887765 6889999999999886554 78899999998886 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
++.|-...+.+..
T Consensus 160 EEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 160 EEAFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
No 44
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=2.2e-25 Score=214.70 Aligned_cols=167 Identities=22% Similarity=0.269 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
.||+++|++|||||||+++|.++.|...+.++. .........+...+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999999877643333 3333333344556889999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc----------chhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
++++.+|+.+...|+..+....++.|++||+||+|+...+... ...+....++...+. .++++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence 9999999998767999998777789999999999997654210 112233455555553 37999999999
Q ss_pred CCchHHHHHHHHHHcCCCC
Q 005908 162 IQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~ 180 (670)
.||+++|+++.+.++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 160 RGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999999886554
No 45
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-25 Score=191.67 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=148.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+.-+||+++|..|||||+|+++|..+-|++....|++.++.++++.+.|...++.|||++|+++++++ +..|++.|++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--tqsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--TQSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--HHHHhhhcce
Confidence 45699999999999999999999999999888889999999999999999999999999999999999 9999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++-..||+-+.+|+.++.++... ..--|+|+||+|+.+++.. .+..++|++...+- ++++||+.. |++
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve 158 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVE 158 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHH
Confidence 99999999999999999999999999764 3667899999999987544 66778888886665 899999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
.||..++..+.
T Consensus 159 ~lf~~~a~rli 169 (213)
T KOG0095|consen 159 KLFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 46
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=3e-25 Score=211.00 Aligned_cols=158 Identities=18% Similarity=0.296 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|++.+..+ ...+++++|++|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNV--RPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhc--chhhcCCCCEEEE
Confidence 69999999999999999999999998888888876654 45677767778889999999999887 7788999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||++++.||+.+ ..|+..+.+..+ +.|+++||||+||.+ .....++++++++.+++.++++
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCP----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCC----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999999996 799999987753 689999999999964 1244789999999999866999
Q ss_pred eecccC-C-hHHHHHHHHHHH
Q 005908 570 VSMKSK-D-LNNVFSRIIWAA 588 (670)
Q Consensus 570 vSA~~g-~-v~~l~~~l~~~~ 588 (670)
+||++| | |+++|..+++..
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHH
Confidence 999999 7 999999999854
No 47
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4.1e-25 Score=216.94 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=142.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|++|||||||+++|+++.|...+.||++..+.. .+.++|....+.+||++|++.|..+ ...+++++|++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~--~~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHH--HHHHcCCCcEE
Confidence 45899999999999999999999999998888898876653 4677777788999999999999888 78899999999
Q ss_pred EEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCCCCc
Q 005908 502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGIEPP 567 (670)
Q Consensus 502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 567 (670)
|+|||++++.||+.+ ..|+.++..... +.|+|+|+||+|+.+ ..+..++++++++++++.+|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999984 799999987653 589999999999864 23447889999999998669
Q ss_pred EEeecccC--ChHHHHHHHHHHHhCC
Q 005908 568 IPVSMKSK--DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 568 ~~vSA~~g--~v~~l~~~l~~~~~~~ 591 (670)
++|||++| ||+++|+.+++.+.+.
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 4999999999987653
No 48
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=3.6e-25 Score=208.79 Aligned_cols=160 Identities=23% Similarity=0.329 Sum_probs=132.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+||+++|++|||||||+++|.+++|....+++.+... ....+....+++.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999998877665443332 2334555678899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||++++.+|+.+.. |+..++.. .++.|+++|+||+|+...+.+ . .+....+++..+ .++++|||++|.||+++|
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQRDV-T-YEEAKQFADENG--LLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999985 88877654 357899999999999876655 3 344566777665 379999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
..+.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99988764
No 49
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=191.80 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=138.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+|+.|+|+..||||||+.|+.+..|....-.+.+... +.+--....+++++|||+|++.+..++..++++|+++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 57999999999999999999999999887443333333 2222224568999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||+++.+||..++. |.-.++.+. .+.|+||||||||+.+++.+ ..+....+++++|. .+||+|||.+.||+++|
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQVF 175 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHHH
Confidence 99999999999996 999998764 58999999999999988877 55667899999985 79999999999999999
Q ss_pred HHHHHHHcCC
Q 005908 169 YYAQKAVLHP 178 (670)
Q Consensus 169 ~~i~~~~~~~ 178 (670)
+.+...+...
T Consensus 176 e~lv~~Ic~k 185 (193)
T KOG0093|consen 176 ERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHH
Confidence 9988876543
No 50
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=8.2e-25 Score=206.31 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=140.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|++|||||||+++|.++.+...+.+|++.++....+...+....+.+||++|++++..+ ...+++++|++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEEE
Confidence 489999999999999999999999988887788888887777888866778899999999999887 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+. ..+++.++++..+++ ++++||++| |++++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA 155 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999999999999999988765432 589999999999976543 367888889888875 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|+.+++.+.
T Consensus 156 f~~l~~~~~ 164 (166)
T cd04122 156 FLETAKKIY 164 (166)
T ss_pred HHHHHHHHh
Confidence 999987764
No 51
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=204.27 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
.....-+||+++|++|||||-|+.|+..+.|..+...+.+... ....++++.++.+||||+||++|......++++|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 4556779999999999999999999999999888555444433 45677788899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
++++|||++.+.+|+++. +|+.+|+.+. ++++++|||||+||.+.+.+ ..+....++...+ ..++++||..+.|
T Consensus 89 GAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~--l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEG--LFFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcC--ceEEEeccccccc
Confidence 999999999999999998 5999999876 68999999999999987776 4455567777665 3699999999999
Q ss_pred chHHHHHHHHHHcC
Q 005908 164 VPDVFYYAQKAVLH 177 (670)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (670)
|++.|+.++..++.
T Consensus 164 Ve~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 164 VEKAFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887653
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=4.6e-25 Score=207.27 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=129.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.+||+++|++|||||||+++++.+.|...++++.. .......+....+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999988776544333 33333445556688999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.+++.+.. |...+... .+++|+++|+||+|+.+.+.+ ..+....+.+.++ .+++++||++|.||+++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence 9999999999885 87777653 357999999999999765544 2334456666665 479999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 53
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=7.5e-25 Score=213.24 Aligned_cols=166 Identities=17% Similarity=0.285 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
+||+|+|++|||||||+++|+++.+...+.+|.+.++....+..+ |....+.+||++|++.+..+ +..+++++|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM--TRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh--HHHHhCCCCEEE
Confidence 589999999999999999999999888888888888877778877 66778899999999999888 788999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
+|||++++.+|+.+..|+..+...... ...++|+++|+||+|+.+ .....++++++++..++.+++++||++| |+++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999999888654321 112689999999999974 3445778899999998666999999999 9999
Q ss_pred HHHHHHHHHhCC
Q 005908 580 VFSRIIWAAEHP 591 (670)
Q Consensus 580 l~~~l~~~~~~~ 591 (670)
+|++|++.+...
T Consensus 159 ~f~~l~~~l~~~ 170 (201)
T cd04107 159 AMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.7e-24 Score=212.88 Aligned_cols=162 Identities=18% Similarity=0.283 Sum_probs=132.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|++|||||||+++++.+.|...+.++.+... .........+++.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 7789999999999999999999999998777555444333 23334455789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|||++++.+++.+.. |+..+++..+++|++|||||+|+... .+ . .+.+ .+....+ .+|++|||++|.||+++
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~~-~~~~~~~--~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-QV-K-AKQV-TFHRKKN--LQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-cC-C-HHHH-HHHHhcC--CEEEEcCCCCCCCHHHH
Confidence 9999999999999984 99999877778999999999998643 22 1 2222 4444443 37999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|+++.+.+...
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999988644
No 55
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=1.1e-24 Score=206.37 Aligned_cols=162 Identities=16% Similarity=0.307 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+|+|.+|||||||++++.++.+...+.+|++..+. ..+...|....+.+||++|++++..+ +..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAM--RDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHH--hHHHhhcCCEEE
Confidence 379999999999999999999999998877788876554 44566766678889999999999888 788999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.||+.+..|...+.+..... ++|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| ||+++
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~--~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTE--DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDA 155 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHH
Confidence 9999999999999999988887654333 69999999999997543 3467888899888875 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|+++++.+..
T Consensus 156 f~~l~~~~~~ 165 (172)
T cd04141 156 FHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 56
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=8.1e-25 Score=210.93 Aligned_cols=162 Identities=19% Similarity=0.361 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|.+|||||||+++|..+.|...+.||.+..+. ..+.++|....+.+||++|+++++.+ +..+++++|++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l--~~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL--RTLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhccCCCEEE
Confidence 489999999999999999999999998888888876554 33556766778899999999999988 788999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcE
Q 005908 503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPI 568 (670)
Q Consensus 503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~ 568 (670)
+|||++++.||+.+. .|...+..... +.|+++|+||.||.+.. ...++++++++.++..+++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCP----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999997 58887766532 69999999999996532 2356788899998865699
Q ss_pred EeecccC-ChHHHHHHHHHHHhCC
Q 005908 569 PVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 569 ~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
++||++| ||+++|+.+++.+..+
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999 9999999999988764
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.4e-24 Score=204.93 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=141.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+++|++|||||||++++.+..+...+.+|++.++....+..+|....+.+||++|++.+..+ ...+++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhCCCCEE
Confidence 4589999999999999999999999998888888888777777888866678889999999888887 67889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|..+..|+..+...... +.|+++|+||+|+.+.. ...+++..+++.++.+ ++++||++| |+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 155 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHASE---DVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEE 155 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9999999999999999999998876432 68999999999998643 3466778888888875 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+++.+.+.
T Consensus 156 ~~~~i~~~~~ 165 (167)
T cd01867 156 AFFTLAKDIK 165 (167)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 58
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=8.8e-25 Score=213.46 Aligned_cols=159 Identities=25% Similarity=0.287 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+||+|+|++|||||||+++|+++.|....+++..... ......+.+.||||+|++.+..+...+++++|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999998654444332221 1123567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------------------CCCccchhhhhhHHHHHhccC---
Q 005908 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI--- 150 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~--- 150 (670)
+++++|+++...|....+...+++|+||||||+|+.+ .+.+ ..+....++++.+..
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence 9999999998645544444445799999999999976 3343 344567777776532
Q ss_pred ---------CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 151 ---------ETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 151 ---------~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.+|+||||++|.||+++|+.+++.++
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999998775
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=8.5e-25 Score=205.78 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=129.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++||+++|++|||||||+++++.+.+...++++.+. ......+....+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988887765444433 2334445556788899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|+++..+++.+.+ |...+... .++.|+++|+||+|+.....+ . .+....+++.++ .+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV-G-KEQGQNLARQWG--CAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE-c-HHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence 9999999999985 77776542 358999999999999775544 2 233456667666 379999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
+++.+.+
T Consensus 156 ~~l~~~l 162 (164)
T cd04175 156 YDLVRQI 162 (164)
T ss_pred HHHHHHh
Confidence 9998764
No 60
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=1.2e-24 Score=207.82 Aligned_cols=162 Identities=16% Similarity=0.257 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+++|+++.+...+.+|.+.++..+.+.++|....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM--LPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--hHHHCcCCCEEEE
Confidence 58999999999999999999999998888899988887778888876778899999999999887 7789999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC------cccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY------TMAVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
|||++++.||+++..|+..+.+.... ..| ++|+||+|+... +...++.+++++.++.+ ++++||++| |
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~ 153 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSIN 153 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 99999999999999999998776432 466 678999999531 11245677888888864 999999999 9
Q ss_pred hHHHHHHHHHHHhCCC
Q 005908 577 LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 577 v~~l~~~l~~~~~~~~ 592 (670)
++++|+++.+.+....
T Consensus 154 v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 154 VQKIFKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998876533
No 61
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=6.5e-25 Score=208.70 Aligned_cols=160 Identities=26% Similarity=0.396 Sum_probs=130.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 15 I~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
|+|+|++|||||||+++|.++.|...+.++. ........++...+.+.+|||||++.+..+...+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6899999999999999999999877643332 222233444555678999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC------------ccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN------------ATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
++++|+.+...|...+....+++|+++|+||+|+..... + ..+....+++.++. .++++|||++|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~~~ 157 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPV--TYEQGEALAKRIGA-VKYLECSALTQ 157 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCc--cHHHHHHHHHHcCC-cEEEEecCCCC
Confidence 999999997679999988778999999999999975321 2 23345667777763 37999999999
Q ss_pred CCchHHHHHHHHHHcC
Q 005908 162 IQVPDVFYYAQKAVLH 177 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (670)
.||+++|+.+++.+..
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999987754
No 62
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1e-24 Score=212.37 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+||+++|++|||||||+++|+++.+...+.++.+... ....+. ...+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 6999999999999999999999988776544443222 233444 5578899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
||++++.+|+.+. .|...+... ..++|++||+||+|+...+.+ ..+.+..+++..+ ..++++|||++|.||
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG-FIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-CceEEEEeCCCCCCH
Confidence 9999999999997 588887642 257899999999999754444 3445677777766 237999999999999
Q ss_pred hHHHHHHHHHHcCC
Q 005908 165 PDVFYYAQKAVLHP 178 (670)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (670)
+++|+++.+.+...
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 63
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=1e-24 Score=210.16 Aligned_cols=164 Identities=21% Similarity=0.328 Sum_probs=133.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.+.+||+++|++|||||||++++.++.+.....++.+ .......++...+.+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 4579999999999999999999999988766444333 333444556667889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++.+|+.+.. |...+.+. .++.|+++|+||+|+.+.+.+ . .+....+.+.++ .+++++||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV-S-TGEGQELAKSFG--IPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHhC--CEEEEeeCCCCCCHHH
Confidence 999999999999985 88877654 247899999999999765554 2 333455566665 3799999999999999
Q ss_pred HHHHHHHHHcCC
Q 005908 167 VFYYAQKAVLHP 178 (670)
Q Consensus 167 l~~~i~~~~~~~ 178 (670)
+|+++.+.+...
T Consensus 158 ~~~~l~~~l~~~ 169 (189)
T PTZ00369 158 AFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999887644
No 64
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=2.3e-24 Score=203.03 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|.++++...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~--~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI--TTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHccCCcEEEE
Confidence 79999999999999999999999998887788877777666766755678889999999988887 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+. ..+...++++.++++ ++++||++| |++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVF 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 99999999999999999998766432 589999999999976543 356777888888875 999999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
+++.+.+.
T Consensus 156 ~~l~~~~~ 163 (165)
T cd01865 156 ERLVDIIC 163 (165)
T ss_pred HHHHHHHH
Confidence 99988764
No 65
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.4e-24 Score=205.08 Aligned_cols=164 Identities=37% Similarity=0.604 Sum_probs=138.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
++.+||+++|.+|||||||+++|+++.+. ..+.||++.++....+.++|....+.+||++|++.+..+ +..+++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--NDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--chhhhhcCC
Confidence 57899999999999999999999999998 777889988888788888876677888999999887776 677889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+|+.+..|+..+... . ++|+++|+||+|+.+... ...+.+++++.+++.+++++||++| |+
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML---G--EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC---C--CCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 999999999999999888888765321 1 699999999999965432 2445678888888866799999999 99
Q ss_pred HHHHHHHHHHHhCC
Q 005908 578 NNVFSRIIWAAEHP 591 (670)
Q Consensus 578 ~~l~~~l~~~~~~~ 591 (670)
+++|+.+.+.+..+
T Consensus 155 ~~lf~~l~~~~~~~ 168 (169)
T cd01892 155 NELFTKLATAAQYP 168 (169)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999987643
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=1.3e-24 Score=204.62 Aligned_cols=157 Identities=23% Similarity=0.292 Sum_probs=126.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.+||+++|++|||||||+++++++.|...+ |+....+..........+.+.+|||+|++++..+...+++.+|++|+||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999987663 4333333333444556788999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|++++.+++.+.. |+..++.. .+++|+++|+||+|+...+.+ . .+....++..++ .++++|||++|.||++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV-S-SNEGAACATEWN--CAFMETSAKTNHNVQE 155 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee-c-HHHHHHHHHHhC--CcEEEeecCCCCCHHH
Confidence 9999999999885 77777653 257999999999999765544 2 233455555554 3699999999999999
Q ss_pred HHHHHHH
Q 005908 167 VFYYAQK 173 (670)
Q Consensus 167 l~~~i~~ 173 (670)
+|+++++
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 67
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.1e-24 Score=210.07 Aligned_cols=161 Identities=22% Similarity=0.348 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
||+++|++|||||||+++|+++.|...++++.+. ......+.+..+.+.+|||||++++...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 6899999999999999999999887765544432 223334555567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
++..+++.+.. |...+... .+++|+++|+||+|+...+.+ .. .....+++.++ .+++++||++|.||+++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV-ST-EEGAALARRLG--CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 99999999985 87777553 247899999999999766555 33 33456667666 379999999999999999
Q ss_pred HHHHHHHcCCC
Q 005908 169 YYAQKAVLHPT 179 (670)
Q Consensus 169 ~~i~~~~~~~~ 179 (670)
+++.+.+....
T Consensus 156 ~~l~~~l~~~~ 166 (190)
T cd04144 156 YTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHhh
Confidence 99998876443
No 68
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=2.5e-24 Score=201.81 Aligned_cols=158 Identities=23% Similarity=0.393 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||++++.++.+...+.+|.+.++....+...+....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI--TKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh--HHHHhcCCcEEEE
Confidence 48999999999999999999999998877788887777777888866678889999999888887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.||+.+..|+..+...... +.|+++|+||+|+.+.+ ...++...+++.++.+ ++++||++| |++++|
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPE---GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999998776432 59999999999997644 3467888899888865 999999999 999999
Q ss_pred HHHHHH
Q 005908 582 SRIIWA 587 (670)
Q Consensus 582 ~~l~~~ 587 (670)
++|++.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 69
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=2.1e-24 Score=203.36 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.+++|...+.++.+... .........+.+.+|||+|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998776444333221 12233345688999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+++.+.+ |...++... .++|+++|+||+|+.+.+.+ . .+....+.+.++ .+++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDERVV-S-SERGRQLADQLG--FEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCccccc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 9999999999975 998887654 47899999999999776554 2 344456666665 2799999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (165)
T cd01865 157 RLVDIIC 163 (165)
T ss_pred HHHHHHH
Confidence 9987653
No 70
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=1.8e-24 Score=202.82 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++++++.|.....++.+... ....+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999998776444333222 23344455688999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+|+.+.. |+..++... .+.|+++|+||+|+...+.+ . .+....+++.++ .++++|||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQKRQV-G-DEQGNKLAKEYG--MDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999985 988887654 37999999999999877665 3 345566777666 4799999999999999999
Q ss_pred HHHHH
Q 005908 170 YAQKA 174 (670)
Q Consensus 170 ~i~~~ 174 (670)
++.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
No 71
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=1.9e-24 Score=205.23 Aligned_cols=158 Identities=23% Similarity=0.383 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+++|.++.+...+.||++..+.. .+..++....+.+||++|++++..+ +..+++++|++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhh--hhhhcccCCEEEE
Confidence 799999999999999999999999987888888876653 3556656678889999999998887 6778999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||++++.||+.+. .|+..+..... +.|+++|+||+|+.+. ....++++++++..+..++++
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999999997 58888876542 6899999999998653 223567788888888556999
Q ss_pred eecccC-ChHHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~ 588 (670)
+||++| |++++|+.+++.+
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 999999 9999999998854
No 72
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=2.3e-24 Score=203.41 Aligned_cols=161 Identities=17% Similarity=0.278 Sum_probs=132.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+++|++|||||||++++.+..|...+.++.+... ....+....+.+.+|||||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999999998877444443322 233445556889999999999988888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|||++++.+|+.+.+ |+..+.... .+.|+++|+||+|+.+.+.+ ..+....++..++ .+++++||++|.||+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEA 156 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 999999999999985 998887653 47899999999999876554 2334556666665 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
|+++.+.+.
T Consensus 157 ~~~i~~~~~ 165 (167)
T cd01867 157 FFTLAKDIK 165 (167)
T ss_pred HHHHHHHHH
Confidence 999998875
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=1.5e-24 Score=202.10 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+||+++|++|||||||+++++.+.|....+++.+.....+.+.+..+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999998887765555444444445555568899999999864 3567899999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
+++.||+++.. |+..+.... +++|+++||||+|+.. .+.+ ..+..+.++++.+. ..|++|||++|.||+++|
T Consensus 76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF 151 (158)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence 99999999985 888887653 5789999999999853 3344 33445667766543 379999999999999999
Q ss_pred HHHHHH
Q 005908 169 YYAQKA 174 (670)
Q Consensus 169 ~~i~~~ 174 (670)
+.+.+.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 988764
No 74
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=2.2e-24 Score=202.73 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++||+++|++|||||||+++++.+.+.....++.. .......+.+..+.+.||||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998776544333 22234444555678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.+++++.. |...+.+.. .++|+++|+||+|+.....+ . ......++..++ .++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV-S-SAEGRALAEEWG--CPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc-C-HHHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 9999999999985 877776542 58999999999999765444 2 233456666665 379999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9988653
No 75
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=4.3e-24 Score=209.97 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+.++++ ...+.+||++|++.+..+ ...+++++|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--LDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH--HHHHhhcCCEEE
Confidence 58999999999999999999999998888889887777777877753 567889999999888887 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.||+.+..|+..+.+.......+.|+++|+||+|+.+. ....+..+.+++.+++. ++++||++| |++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l 157 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL 157 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 9999999999999999999998775432125789999999999753 34467788899888875 999999999 99999
Q ss_pred HHHHHHHHhCC
Q 005908 581 FSRIIWAAEHP 591 (670)
Q Consensus 581 ~~~l~~~~~~~ 591 (670)
|+++.+.+...
T Consensus 158 f~~l~~~l~~~ 168 (215)
T cd04109 158 FQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 76
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.4e-25 Score=189.41 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=137.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
+--+||++||+.|||||.|+++|+.+-|++....+.+... +.+.+.+++++++||||+|+++|++.+.++++.|+++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 4458999999999999999999999998877554444433 56778889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||++...+|+-+-+ |+.+++.+.. .+--|+||||+|+.+.+++ ..+..+++.+.... -|+|+||+...||+.
T Consensus 85 lvydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qdm--yfletsakea~nve~ 159 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQDM--YFLETSAKEADNVEK 159 (213)
T ss_pred EEEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhhh--hhhhhcccchhhHHH
Confidence 9999999999999985 9999988754 4455899999999988776 44555666665433 489999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|..+...+.
T Consensus 160 lf~~~a~rli 169 (213)
T KOG0095|consen 160 LFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 77
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=4.4e-24 Score=201.34 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+|+|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhCcCCEEE
Confidence 489999999999999999999999988877788887777777877766678889999999888887 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||+++++||..+..|+..+...... +.|+++|+||+|+...... .+++..+++.++.+ ++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQA 155 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHH
Confidence 999999999999999999998876532 5899999999998764433 57788888888875 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|+.|.+.+.
T Consensus 156 ~~~i~~~~~ 164 (166)
T cd01869 156 FMTMAREIK 164 (166)
T ss_pred HHHHHHHHH
Confidence 999998774
No 78
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=2.6e-24 Score=202.15 Aligned_cols=159 Identities=22% Similarity=0.391 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||++++.++.+...+.+|++.. ....+..++....+.+||++|++++..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAM--RDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchH--HHHHhhcCCEEEE
Confidence 799999999999999999999999887777877643 3455667765667889999999998887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|+.+..|+..+....... +.|+++|+||+|+.+.+. ..++...+++.++. +++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTE--NVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDEVF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Confidence 999999999999999999988765433 699999999999976433 35566778888774 5999999999 999999
Q ss_pred HHHHHHH
Q 005908 582 SRIIWAA 588 (670)
Q Consensus 582 ~~l~~~~ 588 (670)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 79
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=4.7e-24 Score=204.02 Aligned_cols=163 Identities=13% Similarity=0.259 Sum_probs=138.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------CCceEEEEEecCChhhHhhhhch
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN 491 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~----------g~~~~~~i~d~~g~~~~~~~~~~ 491 (670)
+.+||+++|++|||||||++++.++.+...+.+|.+.++....+... +....+.+||++|++.+..+ +
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--T 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH--H
Confidence 56899999999999999999999999988877888766665544433 34567889999999998887 7
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEe
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v 570 (670)
..+++++|++++|||++++.||..+..|+..+....... +.|+++|+||+|+.+.+ ...++++++++.++++ ++++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~ 157 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE--NPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFET 157 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEE
Confidence 889999999999999999999999999999987764332 68999999999997643 3467788999998875 9999
Q ss_pred ecccC-ChHHHHHHHHHHHh
Q 005908 571 SMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~ 589 (670)
||++| |++++|+.+.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999 99999999998764
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=4.2e-24 Score=201.64 Aligned_cols=163 Identities=18% Similarity=0.286 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|+++++...+.+|.+.++....+...|....+.+||++|++.+..+ ...+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--RNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--HHHHhccCCEEEE
Confidence 58999999999999999999999998888888888887777888877788899999999888877 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
|||++++.+|+.+..|+..+.+..... ..+.|+++|+||+|+.++ ....++.+.+++..+.+ ++++||++| |+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 157 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE 157 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 999999999999999999998775420 116999999999999743 33466777788888865 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+.|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=3.5e-24 Score=200.86 Aligned_cols=159 Identities=20% Similarity=0.356 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+|+|+++.+...+.+|++..+ ...+.+++....+.+||++|++++..+ +..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHH--HHHHHhcCCEEEE
Confidence 7999999999999999999999998887777777654 455566655567778999999999888 7889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+.+......+..++++.++.+ ++++||++| |++++|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSD--DVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFY 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHH
Confidence 999999999999999998888765433 689999999999987555567788888888875 999999999 9999999
Q ss_pred HHHHHH
Q 005908 583 RIIWAA 588 (670)
Q Consensus 583 ~l~~~~ 588 (670)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 82
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=4.9e-24 Score=201.84 Aligned_cols=164 Identities=16% Similarity=0.291 Sum_probs=141.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+||++|++++..+ +..+++.+|++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~ 81 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL--RTPFYRGSDCC 81 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh--HHHHhcCCCEE
Confidence 4599999999999999999999999988777777777666666777767778889999999999888 77899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|...+....... ..+.|+++|+||+|+.+.....++++++++.++..+++++||++| |+.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999998887654321 126899999999999865556788899999988767999999999 9999
Q ss_pred HHHHHHHH
Q 005908 580 VFSRIIWA 587 (670)
Q Consensus 580 l~~~l~~~ 587 (670)
+|+.+++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999875
No 83
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=2.1e-24 Score=206.44 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc----------CCceeEEEEeCCCCccchhhhHH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE 78 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~ 78 (670)
..+||+++|++|||||||++++.++.+.....++.+... ....+. ...+.+.+|||||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999988776444333221 111111 34588999999999999999999
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEe
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
+++++|++++|||+++++++.++.. |+..+... .++.|+++|+||+|+.+.+.+ ..+....+++.++ .+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYG--IPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcC--CeEEEE
Confidence 9999999999999999999999984 99888764 357899999999999876655 3344677788776 379999
Q ss_pred CcccCCCchHHHHHHHHHHc
Q 005908 157 SATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~ 176 (670)
||++|.|++++|+.+.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 84
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=192.66 Aligned_cols=170 Identities=15% Similarity=0.240 Sum_probs=141.6
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (670)
.+-....-.+||+++|..-||||||+-|++.++|....-++..... ..+.+.+....+.||||+|+++|..+-+.|++
T Consensus 5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR 84 (218)
T KOG0088|consen 5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR 84 (218)
T ss_pred ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence 3344455689999999999999999999999998776322222111 44555566788999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+++++|+|||++|++||+.+++ |..+++.. +..+.+++||||+||..++.+ ..+..+.++...|. .++++||+.
T Consensus 85 gSnGalLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V--t~qeAe~YAesvGA--~y~eTSAk~ 159 (218)
T KOG0088|consen 85 GSNGALLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV--TRQEAEAYAESVGA--LYMETSAKD 159 (218)
T ss_pred CCCceEEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh--hHHHHHHHHHhhch--hheeccccc
Confidence 9999999999999999999996 99999874 446888999999999999988 44556888888886 599999999
Q ss_pred CCCchHHHHHHHHHHcCC
Q 005908 161 MIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~ 178 (670)
+.||.++|+.+....+..
T Consensus 160 N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEH 177 (218)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 999999999988776533
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2.6e-24 Score=207.19 Aligned_cols=157 Identities=28% Similarity=0.399 Sum_probs=123.0
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHcCCC-----CCCCCCCCC---CeEeC--------CcccCCceeEEEEeCCCCccchh
Q 005908 12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLP--------PDFYPDRVPVTIIDTSSSLENKG 74 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~-~l~~~~~-----~~~~~~~~~---~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~ 74 (670)
.+||+++|++|||||||+. ++.++.| ...+.++.+ ..... ..+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 6665543 333333331 12111 13456688999999999875 3
Q ss_pred hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------------------CCCccc
Q 005908 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATS 135 (670)
Q Consensus 75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------------------~~~~~~ 135 (670)
....+++++|++|+|||++++.||+++...|...++...++.|++|||||+|+.. .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V-- 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL-- 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence 4567899999999999999999999997669999987767899999999999864 2333
Q ss_pred hhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~ 174 (670)
..+..+.++++++. +|+||||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence 34567888888873 79999999999999999998864
No 86
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=3.6e-24 Score=201.47 Aligned_cols=161 Identities=21% Similarity=0.386 Sum_probs=136.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
++||+++|.+|||||||+++++.+.+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i 77 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFV 77 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhH--HHHHHhhCCEEE
Confidence 379999999999999999999998887777788876554 45666656677789999999999988 788999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||+++..+|+.+..|+..+....... +.|+++|+||+|+.+.... ....+++++.++.+ ++++||++| |++++
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 78 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEI 154 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence 9999999999999999999987654333 7999999999999764433 55677888888865 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|+++.+.+.
T Consensus 155 ~~~l~~~l~ 163 (164)
T cd04175 155 FYDLVRQIN 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988653
No 87
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=2.7e-24 Score=205.30 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=128.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|+++.|...+.++.+... ....+.+..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999877555444322 33445555788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCC----CCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGD----HNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|++++.+++++.. |+..+++..+ ..| ++||||+|+... ... ...+....+++.++ .++++|||++|.||+
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~ 155 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAKAMK--APLIFCSTSHSINVQ 155 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999974 9998877543 455 689999999632 111 12244566777766 379999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (182)
T cd04128 156 KIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 88
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=5.4e-24 Score=201.23 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=138.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|++|||||||+++|+++.+...+.+|++.++....+.+.|....+.+||++|++.+..+ +..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--ASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--HHHHhcCCCEEEEE
Confidence 7999999999999999999999998888889888887777777766778899999999999888 78889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
||++++.+|..+..|+..+.+..... ..|+++|+||+|+.+... ..+++..+++.++.+ ++++||++| |++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~l 156 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREF 156 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 99999999999999999886654332 478999999999965432 245667778888765 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|+.|++.+.
T Consensus 157 f~~l~~~~~ 165 (170)
T cd04108 157 FFRVAALTF 165 (170)
T ss_pred HHHHHHHHH
Confidence 999998875
No 89
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=5.9e-24 Score=200.23 Aligned_cols=161 Identities=22% Similarity=0.368 Sum_probs=139.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+|+|++|||||||++++.++.+...+.+|.+.++....+..++....+.+||++|++.+..+ +..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--TQSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEE
Confidence 4589999999999999999999999888777777777777777877755567889999999988887 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+. ..+.+.++++.++..+++++||++| |+++
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYGAS---NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 9999999999999999999998765432 689999999999976543 3677888999888777999999999 9999
Q ss_pred HHHHHHHH
Q 005908 580 VFSRIIWA 587 (670)
Q Consensus 580 l~~~l~~~ 587 (670)
+|+.+.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999864
No 90
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=5.8e-24 Score=207.99 Aligned_cols=164 Identities=20% Similarity=0.348 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+. |....+.+||++|++.+..+ ...+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--TRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--HHHHhcCCcEE
Confidence 4899999999999999999999999988888888877777777764 44568889999999998887 78899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.||+.+..|+..+....... ..|+++|+||+|+.+.. ...++..++++.+++. ++++||++| |+++
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~--~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e 156 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQPH--RPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEE 156 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence 99999999999999999999988765433 57899999999997643 3467788899998865 999999999 9999
Q ss_pred HHHHHHHHHhCC
Q 005908 580 VFSRIIWAAEHP 591 (670)
Q Consensus 580 l~~~l~~~~~~~ 591 (670)
+|+.|.+.+...
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999876433
No 91
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=4.3e-24 Score=201.41 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+||+++|++|||||||+++++++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888666433333222 2333445567899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||+++++++..+.+ |+..++... ++.|+++|+||+|+.....+ . .+....+++.++ .+++++||++|.||+++|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV-D-YSEAQEFADELG--IPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCcCHHHHH
Confidence 99999999999985 999887754 57999999999998766554 2 344566666665 379999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
+.+.+.+.
T Consensus 157 ~~i~~~~~ 164 (166)
T cd01869 157 MTMAREIK 164 (166)
T ss_pred HHHHHHHH
Confidence 99988764
No 92
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=4.4e-24 Score=200.82 Aligned_cols=160 Identities=18% Similarity=0.288 Sum_probs=129.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+.+||+++|++|||||||+++++++.+....+++... ......+.+..+.+.+|||||++++..++..+++.+|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3589999999999999999999998887665444433 223344555567899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
||++++.+++.+.. |...+.+. ..++|+++|+||+|+.....+ . .+....+++.++ .+++++||++|.||+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV-S-REEGQELARKLK--IPYIETSAKDRLNVDKA 155 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee-c-HHHHHHHHHHcC--CcEEEeeCCCCCCHHHH
Confidence 99999999999985 77777553 347899999999999765544 2 234556666665 27999999999999999
Q ss_pred HHHHHHHH
Q 005908 168 FYYAQKAV 175 (670)
Q Consensus 168 ~~~i~~~~ 175 (670)
|+.+.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998753
No 93
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=3.4e-24 Score=206.35 Aligned_cols=164 Identities=25% Similarity=0.364 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.++.+...+.++... ........ ...+.+.+|||||++++......+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999987664443322 22223333 45678999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC---CccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|++++.+|+++...|+..+....+++|+++|+||+|+.... .. ...+....++..++. .++++|||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGA-FAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCC-cEEEEccCCCCCCHHHH
Confidence 99999999999767988887766789999999999986542 11 123455667777653 37999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|+.+.+.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 94
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=7.4e-24 Score=199.55 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=139.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+++|++|||||||++++.++.+...+.+|++.++....+..+|....+.+||++|++.+..+ ...+++.++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI--TSAYYRGAVGA 79 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHCCCCEE
Confidence 4589999999999999999999999988888888887777777888865667889999999988887 77888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|..+..|+..+...... +.|+++|+||+|+...+. ..++...++...+.. ++++||++| |+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 155 (165)
T cd01868 80 LLVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEE 155 (165)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence 9999999999999999999998876543 589999999999976433 366777888877765 999999999 9999
Q ss_pred HHHHHHHHH
Q 005908 580 VFSRIIWAA 588 (670)
Q Consensus 580 l~~~l~~~~ 588 (670)
+|+.+++.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 95
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=4.1e-24 Score=201.69 Aligned_cols=159 Identities=22% Similarity=0.268 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|+++++...+.++.+... .........+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998776544443322 23445566789999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
|++++.+++.+. .|...+.+.. .+.|+++|+||+|+.+.... ..+....++...+ .+++++||++|.||
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence 999999999987 4888887643 36899999999999754433 2344455666665 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+.+.+.++
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 96
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=4.7e-24 Score=209.75 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=139.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|.+|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+ +..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--RDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHcccccE
Confidence 56699999999999999999999999988888888887777666767766778899999999999887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
+|+|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.......+.. .+++..++. ++++||++| |+++
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~ 162 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEK 162 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHH
Confidence 9999999999999999999999987643 69999999999997644444444 667776665 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|++|++.+..
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 97
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=4.5e-24 Score=201.08 Aligned_cols=158 Identities=18% Similarity=0.282 Sum_probs=127.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++++.+.+.....++.+... .........+.+.+|||+|++.+......+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887766444443322 22233455788999999999998888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
|++++.+++.+. .|...+.+...++|+++|+||+|+... .+ ..+ ...+.+... .+++++||++|.||+++|++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-~~--~~~-~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-KV--KAK-QITFHRKKN--LQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-cC--CHH-HHHHHHHcC--CEEEEEeCCCCCChHHHHHH
Confidence 999999999997 499999887668999999999999732 22 122 233444332 47999999999999999999
Q ss_pred HHHHHcC
Q 005908 171 AQKAVLH 177 (670)
Q Consensus 171 i~~~~~~ 177 (670)
+.+.+..
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
No 98
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=4.3e-24 Score=200.28 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++++++.|.+...++..... ....+....+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988766443322221 23344556788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
|++++.+++++. .|+..+++..+++|+++|+||+|+... ..+....+....+ .+++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 999999999987 599999877778999999999998532 1222334444443 37999999999999999999
Q ss_pred HHHHHcC
Q 005908 171 AQKAVLH 177 (670)
Q Consensus 171 i~~~~~~ 177 (670)
+.+.++.
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987654
No 99
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=5.4e-24 Score=199.58 Aligned_cols=158 Identities=20% Similarity=0.333 Sum_probs=126.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.+||+++|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 4799999999999999999999998877655444332 233445555677899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.+++++.. |...+.+. ..++|+++|+||+|+... .. .......+.+.++ .+++++||++|.||+++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHH
Confidence 9999999999875 77766553 247999999999999753 22 2334455666665 379999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9998653
No 100
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=5e-24 Score=200.46 Aligned_cols=159 Identities=20% Similarity=0.333 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+|+|++|||||||+++|++..+....+++.. .......+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999999988776444333 233444455567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
++++++++.+.. |...+.+. ..++|+++|+||+|+...+.. ..+....+++.++ .+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence 999999999985 77766543 247899999999999765544 2344556666665 3799999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
++.+.+.
T Consensus 156 ~l~~~~~ 162 (164)
T smart00173 156 DLVREIR 162 (164)
T ss_pred HHHHHHh
Confidence 9987654
No 101
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=8e-24 Score=205.52 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=142.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
++.+||+|+|++|||||||+++|.+..+...+.+|.+.++....++++|....+.+||++|++.+..+ +..+++.+|+
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~a~~ 81 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI--TSTYYRGTHG 81 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH--HHHHhCCCcE
Confidence 35799999999999999999999999988777788887787788888866678889999999888887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+|+.+..|+..+..... ..|+++|+||+|+.+... ..++...+++.++.. ++++||++| |++
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~~----~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~ 156 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNCD----DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVE 156 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHH
Confidence 9999999999999999999999877543 589999999999986544 357778888888865 999999999 999
Q ss_pred HHHHHHHHHHhCC
Q 005908 579 NVFSRIIWAAEHP 591 (670)
Q Consensus 579 ~l~~~l~~~~~~~ 591 (670)
++|++|.+.+...
T Consensus 157 ~lf~~l~~~~~~~ 169 (199)
T cd04110 157 EMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987543
No 102
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=8.5e-24 Score=206.62 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+|+|.+|||||||+++|.++.+...+.||+...+. ..+.++|....+.+||++|++.|..+ ...+++.+|++|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l--~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNV--RPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHH--hHHhccCCCEEEE
Confidence 69999999999999999999999998888899887765 34566766778889999999999888 7889999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||+++++||+.+. .|...+..... +.|++||+||+|+... ....++.+.++++++..+|++
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCP----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 99999999999984 67766655443 6999999999999652 133678999999999766999
Q ss_pred eecccC-C-hHHHHHHHHHHHhCCC
Q 005908 570 VSMKSK-D-LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 570 vSA~~g-~-v~~l~~~l~~~~~~~~ 592 (670)
+||+++ | |+++|+.++.....+.
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 999998 6 9999999999775533
No 103
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.5e-24 Score=187.23 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=136.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeC--Cccc-CCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
...++++++|++-||||||+..++.++|.+-..++.+..... ++.. +..+++++|||+|+++|.+.+.+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 357899999999999999999999999988755544443311 1222 4478999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCE-EEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPI-IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pv-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
++|||++|++||+.+.+ |..+...+ .|+++| .|||+|+|+...+++ ..++.+.+++.++. .|+|+||++|.|
T Consensus 86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hgM--~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHGM--AFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcCc--eEEEecccCCCc
Confidence 99999999999999996 98888654 356665 479999999999998 45667999999986 699999999999
Q ss_pred chHHHHHHHHHHc
Q 005908 164 VPDVFYYAQKAVL 176 (670)
Q Consensus 164 i~~l~~~i~~~~~ 176 (670)
|++.|+.+.+.+.
T Consensus 161 VeEAF~mlaqeIf 173 (213)
T KOG0091|consen 161 VEEAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 104
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.4e-25 Score=186.71 Aligned_cols=164 Identities=20% Similarity=0.340 Sum_probs=147.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEE
Q 005908 428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (670)
Q Consensus 428 ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D 506 (670)
++|++++|||+|+-++..+.|....- .|.+.++..++++.++...++.+||++|+++++++ +..|++++|+.+++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--t~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--THAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--hHhhhcccceeeeeee
Confidence 68999999999999999888765543 68889999999999988999999999999999999 9999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHH
Q 005908 507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRI 584 (670)
Q Consensus 507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l 584 (670)
++++.||++...|+.++.++... ...+++++||+|+..++ +..++.+.+++.+++| ++++||||| ||+..|-.|
T Consensus 80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHH
Confidence 99999999999999999998776 48899999999997754 4478899999999998 999999999 999999999
Q ss_pred HHHHhCCCCCCCC
Q 005908 585 IWAAEHPHLNIPE 597 (670)
Q Consensus 585 ~~~~~~~~~~~~~ 597 (670)
.+.+.+.+...|.
T Consensus 156 a~~l~k~~~~~~~ 168 (192)
T KOG0083|consen 156 AEELKKLKMGAPP 168 (192)
T ss_pred HHHHHHhccCCCC
Confidence 9998776665443
No 105
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=7.5e-24 Score=205.71 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=133.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+|+|++|||||||+++|.+..|...+.++.+... ....+.+..+.+.+|||||++.+...+..+++++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999988765444333222 233344556789999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|||++++++++.+. .|+..+....+..|+++|+||+|+.....+ ..+....+...++ .+++++||++|.||+++|
T Consensus 85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence 99999999999998 499999887778999999999999865544 3344556666665 479999999999999999
Q ss_pred HHHHHHHcCC
Q 005908 169 YYAQKAVLHP 178 (670)
Q Consensus 169 ~~i~~~~~~~ 178 (670)
+++.+.++..
T Consensus 160 ~~l~~~~~~~ 169 (199)
T cd04110 160 NCITELVLRA 169 (199)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 106
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=6e-24 Score=200.93 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=128.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
||+++|++|||||||+++++++.|...+.++.+... ....+.+..+.+.+|||||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999998877544443322 233444556889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
++++.+++.+.. |++.+.+. .+ +.|+++|+||+|+.........++....++++++. +++++||++|.||+++|+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCCCHHHHHH
Confidence 999999999984 98887543 33 57899999999996554321234445566666653 799999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
.+.+.+.
T Consensus 159 ~l~~~~~ 165 (170)
T cd04108 159 RVAALTF 165 (170)
T ss_pred HHHHHHH
Confidence 9988764
No 107
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=8.8e-25 Score=188.84 Aligned_cols=163 Identities=17% Similarity=0.278 Sum_probs=146.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+++|..-||||||+-|++...|......|....+..+.+.+.+....+.||||+|+++|.++ -+-||++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL--GPIYYRgSn 87 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL--GPIYYRGSN 87 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc--CceEEeCCC
Confidence 346699999999999999999999999998877677777787788888877778999999999999998 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++|++||+.++.|..++...... .+.+++|+||+||.+++.. .++++.+++..+.. ++++||+.+ ||
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGI 163 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCH
Confidence 999999999999999999999999988765 4889999999999886555 78899999999987 999999999 99
Q ss_pred HHHHHHHHHHH
Q 005908 578 NNVFSRIIWAA 588 (670)
Q Consensus 578 ~~l~~~l~~~~ 588 (670)
.++|+.+...+
T Consensus 164 ~elFe~Lt~~M 174 (218)
T KOG0088|consen 164 SELFESLTAKM 174 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999887755
No 108
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=5e-24 Score=200.00 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc--CCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+||+++|++|||||||+++++++.+.....++.+... ....+. ...+++.+|||||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988766443332222 222333 557889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|||++++++++.+.. |...+....+++|+++|+||+|+..+..+ . .+....+++.++ .+++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQAVI-T-NEEAEALAKRLQ--LPLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence 999999999999874 99888877778999999999999876555 3 344566777766 379999999999999999
Q ss_pred HHHHHH
Q 005908 169 YYAQKA 174 (670)
Q Consensus 169 ~~i~~~ 174 (670)
+++...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 988753
No 109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=5.9e-24 Score=209.01 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=131.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+||+++|++|||||||+++|+++.|...+.++.+... ....+.. ..+.+.||||+|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988777555443222 2233332 468899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
||++++++|+.+. .|...+.+.. .++|+++|+||+|+.+.+.+ ..+....+++.++ .++++|||++|.||+
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~--~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANG--MESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence 9999999999997 4999887653 24689999999999766655 3445667777776 379999999999999
Q ss_pred HHHHHHHHHHcCC
Q 005908 166 DVFYYAQKAVLHP 178 (670)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (670)
++|+++.+.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 110
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=8.6e-24 Score=200.59 Aligned_cols=157 Identities=21% Similarity=0.353 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+|+|.+|||||||+.++.++.+...+.+|....+. ..+..++....+.+||++|++.+..+ +..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhcCCCCEEEE
Confidence 69999999999999999999999998887788765443 34556666678889999999998887 7778999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||+++++||+.+. .|+..+..... +.|+++|+||+|+.+.+ ...++++++++.++..++++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999999986 68887766532 69999999999996432 34678888999998656999
Q ss_pred eecccC-ChHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~ 587 (670)
+||++| |++++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 999999 999999999864
No 111
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.91 E-value=6.2e-24 Score=201.95 Aligned_cols=160 Identities=23% Similarity=0.361 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+++|.++.|.....++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999998766444332 222334445556778999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++++.+|+.+...|...++...+++|+++|+||+|+.+.. .+ ..+....+++.++. .++++|||+
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~ 157 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPV--TVEQGQKLAKEIGA-HCYVECSAL 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCC--CHHHHHHHHHHcCC-CEEEEecCC
Confidence 9999999999877999988767789999999999986532 22 23445667777764 369999999
Q ss_pred cCCCchHHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKAV 175 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~ 175 (670)
+|.||+++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 112
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=1e-23 Score=198.63 Aligned_cols=159 Identities=16% Similarity=0.265 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+ ...++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--RDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--cHHHhcCCCEEEE
Confidence 58999999999999999999988887777778776666555666666778889999999888777 6778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
|||++++.+|+.+..|+..+..... +.|+++|+||+|+..... .....++++..+.. ++++||++| |++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQ-YYEISAKSNYNFEKPFL 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccC-CHHHHHHHHHcCCE-EEEEeCCCCCChHHHHH
Confidence 9999999999999999999988754 599999999999985333 33345566655544 999999999 9999999
Q ss_pred HHHHHHhC
Q 005908 583 RIIWAAEH 590 (670)
Q Consensus 583 ~l~~~~~~ 590 (670)
+|++.+.+
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99988754
No 113
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.91 E-value=5.2e-24 Score=199.92 Aligned_cols=158 Identities=25% Similarity=0.382 Sum_probs=136.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
||+++|++|||||||+++|.++.|.....++.+... ....+....+.+.+||++|++.+......+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999998887555442222 455566778899999999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
+++++|++.+. .|++.+....+ +.|++|||||+|+.+.+.+ ..+..+.++++++ .+|++|||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence 99999999999 69999988776 6999999999999876665 3345688888887 48999999999999999999
Q ss_pred HHHHHc
Q 005908 171 AQKAVL 176 (670)
Q Consensus 171 i~~~~~ 176 (670)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 114
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.8e-23 Score=201.74 Aligned_cols=167 Identities=22% Similarity=0.410 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
+||+|+|++|||||||+++|.++.+.. .+.+|++.++....+...|....+.+||++|++.+..+ ...+++.+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV--THAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh--hHHHccCCCEEE
Confidence 589999999999999999999998864 45567777776667777766778889999999988887 678899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+|+++..|+..+...... ++|+++|+||+|+...+ ...++.+.+++.++.+ ++++||++| |++++
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l 154 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELA 154 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999999999999999998876543 58999999999997533 3466788888888865 999999999 99999
Q ss_pred HHHHHHHHhCCCCCCC
Q 005908 581 FSRIIWAAEHPHLNIP 596 (670)
Q Consensus 581 ~~~l~~~~~~~~~~~~ 596 (670)
|++|.+.+.......+
T Consensus 155 ~~~l~~~~~~~~~~~~ 170 (191)
T cd04112 155 FTAVAKELKHRKYEQP 170 (191)
T ss_pred HHHHHHHHHHhccccC
Confidence 9999998866544333
No 115
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1e-23 Score=198.12 Aligned_cols=159 Identities=23% Similarity=0.365 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||++++.++.+...+.+|.+ .+....+.++|....+.+||++|++++..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccch--HHHHHhhCCEEEE
Confidence 7999999999999999999999999887777765 345566777766667889999999998888 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.||+++..|+..+.+..... ++|+++|+||+|+..... ...+...+++.++. +++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYE--KVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVNELF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHH
Confidence 999999999999999999888764333 799999999999965433 34567778877776 4999999999 999999
Q ss_pred HHHHHHH
Q 005908 582 SRIIWAA 588 (670)
Q Consensus 582 ~~l~~~~ 588 (670)
+++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 116
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=9.3e-24 Score=198.92 Aligned_cols=160 Identities=17% Similarity=0.275 Sum_probs=128.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+++|++|||||||++++.++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999888776444333222 233344445789999999999888888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+ ..+....+++.++. ..++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEA 157 (165)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHH
Confidence 99999999999987 498888764 357999999999999876554 33445666666653 36899999999999999
Q ss_pred HHHHHHH
Q 005908 168 FYYAQKA 174 (670)
Q Consensus 168 ~~~i~~~ 174 (670)
|+.+.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9998864
No 117
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=202.65 Aligned_cols=163 Identities=18% Similarity=0.337 Sum_probs=138.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+|+|.+|||||||++++.++.+...+.+|++..+. ..+.++++...+.+||++|++.+..+ +..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEEYSAM--RDQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCccchhh--HHHHhhcCCEE
Confidence 3589999999999999999999999988777788776553 55666766677889999999999888 78899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+.+... ...+...+++.++.+ ++++||++| |+++
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKD--RVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDE 157 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHH
Confidence 99999999999999999999987765433 689999999999865432 355677788888765 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|+++++.+..
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 118
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=1.5e-23 Score=196.60 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||++++.++.+...+.++....+....+.+.+....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM--HASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhCCCCEEEE
Confidence 58999999999999999999999888776666665555556666656667889999999999888 7889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
|||++++.+++.+..|+..+.+... +.|+++|+||+|+... ...+...+++..+++ ++++||++| |++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRP----EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQ 151 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence 9999999999999999999876543 6899999999998542 234455666666664 999999999 9999999
Q ss_pred HHHHHHhCC
Q 005908 583 RIIWAAEHP 591 (670)
Q Consensus 583 ~l~~~~~~~ 591 (670)
.+++.+..+
T Consensus 152 ~l~~~~~~~ 160 (161)
T cd04124 152 DAIKLAVSY 160 (161)
T ss_pred HHHHHHHhc
Confidence 999887643
No 119
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=2.2e-23 Score=197.01 Aligned_cols=162 Identities=19% Similarity=0.325 Sum_probs=140.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+|+|++|||||||++++.+..+...+.+|.+.++....+...+....+.+||++|++++..+ ...+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEE
Confidence 4589999999999999999999999988887788777777777777766678889999999988887 77888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.. ...++...++...++. ++++||++| |+++
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~ 156 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEE 156 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9999999999999999999998776432 69999999999998543 3466778888888876 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+.+.+.+.
T Consensus 157 ~~~~~~~~~~ 166 (168)
T cd01866 157 AFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 120
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=2e-23 Score=201.82 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHhhccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALAS 497 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~~ 497 (670)
+||+|+|++|||||||+++|+++++...+.||++.++....+..+|....+.+||++|.+.+... .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876666556666765677889999885432211 013456789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHH-HhCCCCcEEeecccC
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQ-ELGIEPPIPVSMKSK 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~-~~~~~~~~~vSA~~g 575 (670)
+|++|+|||++++.||+.+..|+..+.+.......++|+++|+||+|+...+.. .+..+.++. ..++ +++++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEecCCCC
Confidence 999999999999999999999999887764211116999999999999664433 455666654 4455 4999999999
Q ss_pred -ChHHHHHHHHHHHhCCCCC
Q 005908 576 -DLNNVFSRIIWAAEHPHLN 594 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~~~ 594 (670)
|++++|+.+++.+..+...
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 9999999999988765443
No 121
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=1.3e-23 Score=206.41 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=137.8
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (670)
|...+.......+||+++|++|||||||+++|++..+.....++.+... ..+.+....+.+.||||+|++++...+..
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 3344445555679999999999999999999999988765433333222 33445556789999999999999999999
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+++.++++|+|||++++.+++.+. .|+..++... .++|+++|+||+|+...+.+ ..+....+...++ .+++++|
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~S 155 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEG--LSFLETS 155 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcC--CEEEEEe
Confidence 999999999999999999999987 4988887654 47999999999999766554 3344566666664 4799999
Q ss_pred cccCCCchHHHHHHHHHHcC
Q 005908 158 ATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~ 177 (670)
|++|.||+++|+.+.+.+..
T Consensus 156 A~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 122
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=1.3e-23 Score=202.33 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=135.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+|+|++|||||||+++|.++.+...+.+|....+. ..+..++....+.+||++|++.+..+ +..+++.+|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRL--RSLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhcccc--ccccccCCCEEEEE
Confidence 8999999999999999999999998887788776654 44556656678889999999988887 67789999999999
Q ss_pred EECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-------------cHHHHHHHHHHhCCCCcEEe
Q 005908 505 YDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 505 ~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~v 570 (670)
||++++.||+.+. .|+..+..... +.|+++|+||+|+.+... ..++..++++..+..+++++
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~~----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHCP----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999999886 58888876543 699999999999976432 24456677777775569999
Q ss_pred ecccC-ChHHHHHHHHHHHhCCCC
Q 005908 571 SMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
||++| |++++|+++++.+..+..
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhcccc
Confidence 99999 999999999999876543
No 123
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.2e-23 Score=202.91 Aligned_cols=162 Identities=21% Similarity=0.313 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+||+++|++|||||||+++|.++.+.. ..+++.+ ... ....+....+.+.||||||++.+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998754 3333332 222 2234555678899999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||++++.+++++.. |+..+.... .++|+++|+||+|+...+.+ ..+....+...++ .+++++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99999999999985 888887765 37899999999999765544 2344566667665 379999999999999999
Q ss_pred HHHHHHHcCCC
Q 005908 169 YYAQKAVLHPT 179 (670)
Q Consensus 169 ~~i~~~~~~~~ 179 (670)
+++.+.+....
T Consensus 156 ~~l~~~~~~~~ 166 (191)
T cd04112 156 TAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHhc
Confidence 99999886553
No 124
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=1.3e-23 Score=202.53 Aligned_cols=162 Identities=21% Similarity=0.343 Sum_probs=135.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+|+|.+|||||||+++|.++.+...+.+|++..+. ..+.++|....+.+||++|++++..+ +..+++.+|++|+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTAL--RDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHHhCCEEEEE
Confidence 5899999999999999999999988877788776554 34556655567889999999998887 77899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
||++++.||+.+..|+..+.........+.|+++|+||+|+...+. ...+..++++.++.. ++++||++| |++++|+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY 156 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence 9999999999999999888765432112689999999999975433 355677888888875 999999999 9999999
Q ss_pred HHHHHHhC
Q 005908 583 RIIWAAEH 590 (670)
Q Consensus 583 ~l~~~~~~ 590 (670)
++.+.+..
T Consensus 157 ~l~~~l~~ 164 (190)
T cd04144 157 TLVRALRQ 164 (190)
T ss_pred HHHHHHHH
Confidence 99988753
No 125
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=1.3e-23 Score=197.89 Aligned_cols=159 Identities=20% Similarity=0.258 Sum_probs=128.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe--EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+||+++|++|||||||+++|.++.+.....++.+.. ..........+.+.+|||||++.+...+..+++.++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 4799999999999999999999998876543333322 23334445567899999999999888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||++++.+++++. +|+..++...+ ++|+++|+||+|+...+.+ ..+....+....+ .+++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKNG--LSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 9999999999998 49888877554 5999999999999876554 2334455665554 379999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
+.+...+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 126
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=1.4e-23 Score=202.95 Aligned_cols=164 Identities=19% Similarity=0.246 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhh--------hHHHhcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR 82 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 82 (670)
+||+|+|++|||||||+++|+++.|...+.++.+... ....+.+..+.+.+|||||...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998776443332211 22334455688999999997643211 2345789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+|++|+|||++++.|++.+.. |.+.+... .+++|+++|+||+|+...+.+ . .+....++.+... .++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~-~~~~~~~~~~~~~-~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-P-RHVLSVLVRKSWK-CGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc-c-HHHHHHHHHHhcC-CcEEEecC
Confidence 999999999999999999874 77777543 357999999999999765544 2 3344555433222 47999999
Q ss_pred ccCCCchHHHHHHHHHHcCCCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~ 180 (670)
++|.||+++|+.+++.++....
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCC
Confidence 9999999999999998875543
No 127
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=1.6e-23 Score=197.97 Aligned_cols=160 Identities=20% Similarity=0.268 Sum_probs=130.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+||+|+|++|||||||++++++.++....+++.+... ...........+.+|||+|++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999987776444333322 2334445567899999999998888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
||++++.+++.+.. |+..++.. .+++|+++|+||+|+.....+ ..+....++...+ .+++++||++|.||+++|
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHG--LIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99999999999985 99888764 468999999999999865544 2334556666665 379999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
..+.+.++
T Consensus 159 ~~~~~~~~ 166 (168)
T cd01866 159 INTAKEIY 166 (168)
T ss_pred HHHHHHHH
Confidence 99988764
No 128
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=7.8e-24 Score=201.06 Aligned_cols=158 Identities=26% Similarity=0.369 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||++++.++.|...++++.. .......+....+.+.+|||||++++...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 6899999999999999999999888877555432 222334455556889999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++++.+|+.+.+.|+..++...++.|+++|+||+|+... +.+ ..+....++++.+. .++++|||+
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~Sa~ 157 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV--SQSRAKALAEKIGA-CEYIECSAL 157 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc--CHHHHHHHHHHhCC-CeEEEEeCC
Confidence 999999999876799888876668999999999998643 222 23445667776653 479999999
Q ss_pred cCCCchHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQK 173 (670)
Q Consensus 160 ~~~gi~~l~~~i~~ 173 (670)
+|.||+++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999997764
No 129
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.91 E-value=7.1e-25 Score=175.28 Aligned_cols=89 Identities=63% Similarity=1.017 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCC
Q 005908 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306 (670)
Q Consensus 227 ~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~ 306 (670)
+.+|...+++++++++++..|+++.+.|+|++||++|+++|+++||+||+|+|||+|||+|+|.|.+++++..++++|+|
T Consensus 1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~ 80 (89)
T PF08356_consen 1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQ 80 (89)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999993289999999
Q ss_pred ceecchhHH
Q 005908 307 SVELASEAV 315 (670)
Q Consensus 307 ~~~ls~~~~ 315 (670)
++|||+.|+
T Consensus 81 svELS~~gy 89 (89)
T PF08356_consen 81 SVELSPEGY 89 (89)
T ss_pred eeecCcCcC
Confidence 999999873
No 130
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.2e-24 Score=183.50 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=139.2
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
++....-+|++++|+.|+|||.|+.+|+.++|..+...+.+... .-+.+..+.++++||||+|+++|.+....|+++|
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34455678999999999999999999999998887554444333 2234556789999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
-+.++|||++++++|+.+.+ |+..++... +++-+|++|||.||..++++ ...++ ..++++.. ..+.|+||++|+
T Consensus 83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tflEA-s~FaqEne--l~flETSa~TGe 157 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEA-SRFAQENE--LMFLETSALTGE 157 (214)
T ss_pred cceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHHHH-Hhhhcccc--eeeeeecccccc
Confidence 99999999999999999996 999998764 57888999999999999988 55444 45555443 258999999999
Q ss_pred CchHHHHHHHHHHcCC
Q 005908 163 QVPDVFYYAQKAVLHP 178 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~ 178 (670)
||+|.|-...+.++..
T Consensus 158 NVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 158 NVEEAFLKCARTILNK 173 (214)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999888877644
No 131
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.4e-23 Score=200.56 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+..+|....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL--NNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh--HHHHccCCCEEEE
Confidence 58999999999999999999999998777788887777777777766677889999999888877 7889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|..+..|+..+...... +.|+++|+||+|+.+... .......+++..+++ ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f 154 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAF 154 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 99999999999999999998876543 589999999999985443 356777788888874 999999999 999999
Q ss_pred HHHHHHHhCC
Q 005908 582 SRIIWAAEHP 591 (670)
Q Consensus 582 ~~l~~~~~~~ 591 (670)
+++.+.+...
T Consensus 155 ~~l~~~~~~~ 164 (188)
T cd04125 155 ILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 132
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=1.9e-23 Score=196.52 Aligned_cols=160 Identities=20% Similarity=0.406 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+|+|++|||||||+++|+++.+...+.+|+++.+. ..+..++....+.+||++|++++..+ ...+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQEEFSAM--RDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcccchHH--HHHHHhhCCEEEE
Confidence 48999999999999999999999988877777775543 44556656678889999999988887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+.+.+. ..+.+..+++.++.+ ++++||++| |++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRD--DVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHH
Confidence 999999999999999998887665433 689999999999976443 356777888888854 999999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
++|.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99998765
No 133
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=202.01 Aligned_cols=169 Identities=27% Similarity=0.407 Sum_probs=149.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+|++|||+.+||||+|+..+..+.|... .|++.+.+...+.++ +..+.+.+|||+|+++|..+++..++++|+||
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 3568999999999999999999999999988 677776777777784 88899999999999999998889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC-----------CccchhhhhhHHHHHhccCCeEEEe
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
+||++.+++||+++.++|+.+++.++++.|+||||+|.||.++. .. ...+....++++.|.. .|+||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeee
Confidence 99999999999999999999999999999999999999998531 11 2345667888998864 79999
Q ss_pred CcccCCCchHHHHHHHHHHcCCCC
Q 005908 157 SATTMIQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~~~~ 180 (670)
||++..|+.++|+.+++..+.+..
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999887654
No 134
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=2.9e-23 Score=194.84 Aligned_cols=157 Identities=17% Similarity=0.336 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--CCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~--g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+||+++|++|||||||+++++++.+...+.+|.+.++....+.++ +....+.+||++|++.+..+ +..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh--HHHHhcCCCEE
Confidence 589999999999999999999998887777888776655555555 56678889999999999888 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++++|+.+..|+..+..... +.|+++|+||+|+..+.. ..+++..+++.++++ ++++||++| |+++
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 153 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECG----DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTE 153 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 999999999999999999998876543 699999999999976443 356788889888875 999999999 9999
Q ss_pred HHHHHHHH
Q 005908 580 VFSRIIWA 587 (670)
Q Consensus 580 l~~~l~~~ 587 (670)
+|+.|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998753
No 135
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=1.6e-23 Score=196.44 Aligned_cols=157 Identities=21% Similarity=0.271 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.+..+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 6999999999999999999999988666444333222 33445555688999999999998888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.++..+.. |+..++.. .+++|+++|+||+|+.....+ ..+....+...++ .+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 9999999999884 88877654 468999999999999775544 3344566667666 4799999999999999999
Q ss_pred HHHHH
Q 005908 170 YAQKA 174 (670)
Q Consensus 170 ~i~~~ 174 (670)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd04113 156 KCARS 160 (161)
T ss_pred HHHHh
Confidence 98875
No 136
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=3e-23 Score=195.06 Aligned_cols=160 Identities=20% Similarity=0.398 Sum_probs=134.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|++|||||||+++++++.+...+.+|++..+ ...+.+.|....+.+||++|++++..+ ...+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM--REQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHH--HHHHHhhCCEEE
Confidence 47999999999999999999999888777667776544 344556655667889999999998887 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+...+. ..++..++++.++. +++++||++| |++++
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDRD--EFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDRLNVDKA 155 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHH
Confidence 9999999999999999998887754333 689999999999976443 35567788888887 4999999999 99999
Q ss_pred HHHHHHHH
Q 005908 581 FSRIIWAA 588 (670)
Q Consensus 581 ~~~l~~~~ 588 (670)
|+.+++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 137
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=3e-23 Score=195.43 Aligned_cols=160 Identities=19% Similarity=0.334 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++++++.+...+.+|....+ ...+...++...+.+||++|++++..+ ...+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAM--QRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHH--HHHHhhcCCEEEE
Confidence 7999999999999999999999998777767766544 344455545667889999999988887 6778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|+.+..|+..+.........+.|+++|+||+|+.+. ....++...++...+.. ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f 157 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence 999999999999999988877654322126999999999999763 33355667778777764 999999999 999999
Q ss_pred HHHHHH
Q 005908 582 SRIIWA 587 (670)
Q Consensus 582 ~~l~~~ 587 (670)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999753
No 138
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=2e-23 Score=197.62 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=128.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3569999999999999999999999888776433333222 33445667788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
+|||++++.+++.+.. |...+... ..++|+++|+||+|+. .+.+ ..+.+..++++++. .+++++||++|.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 157 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQV--STEEAQAWCRENGD-YPYFETSAKDAT 157 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-cccc--CHHHHHHHHHHCCC-CeEEEEECCCCC
Confidence 9999999999999874 87776542 2468999999999986 3333 33456677777753 379999999999
Q ss_pred CchHHHHHHHHH
Q 005908 163 QVPDVFYYAQKA 174 (670)
Q Consensus 163 gi~~l~~~i~~~ 174 (670)
|+.++|+.+++.
T Consensus 158 ~v~~~~~~~~~~ 169 (170)
T cd04116 158 NVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998864
No 139
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=2.5e-23 Score=207.39 Aligned_cols=163 Identities=15% Similarity=0.217 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+++|+++.|...+.++... ......+.+..+.+.||||+|++.+..+...++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999988765444433 23334455566889999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc----------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
++++++|+++.. |...+... ..++|+|+|+||+|+...+.+ ..+ .+..+..... ...++++||++|
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~-ei~~~~~~~~-~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRD-EVEQLVGGDE-NCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHH-HHHHHHHhcC-CCEEEEEeCCCC
Confidence 999999999974 77777532 247999999999999765554 333 3344433222 236999999999
Q ss_pred CCchHHHHHHHHHHcCCC
Q 005908 162 IQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (670)
.||+++|+.+......+.
T Consensus 157 ~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 157 SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999998775444
No 140
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=1.7e-23 Score=201.92 Aligned_cols=154 Identities=16% Similarity=0.260 Sum_probs=126.3
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCCh
Q 005908 18 VGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ 95 (670)
Q Consensus 18 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~ 95 (670)
+|++|||||||+++++.+.|...+.++.+... ....++...+++.||||+|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888776544443322 3344556679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 96 ~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
.+|+.+. .|+..+++..+++|++|||||+|+... .+ .. +. ..+++..+ ..+++|||++|.||.++|+++++.+
T Consensus 81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~~-~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-KV-KA-KS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-cC-CH-HH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999998 499999887778999999999998642 33 22 22 24555544 3799999999999999999999988
Q ss_pred cCC
Q 005908 176 LHP 178 (670)
Q Consensus 176 ~~~ 178 (670)
...
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 654
No 141
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.6e-23 Score=203.37 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.+||+|+|++|||||||+++|+++.+.....++.+... ....+ ....+.+.+|||+|++.+......+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999988776444333222 22222 2346789999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++++|+++.+ |+..+.... ..+|++||+||+|+...+.+ ..+....+++.++ .+++++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence 999999999999985 888876542 35778999999999876555 3444677777776 4799999999999999
Q ss_pred HHHHHHHHHcC
Q 005908 167 VFYYAQKAVLH 177 (670)
Q Consensus 167 l~~~i~~~~~~ 177 (670)
+|+.+.+.+..
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 142
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=3.9e-23 Score=203.04 Aligned_cols=164 Identities=19% Similarity=0.338 Sum_probs=143.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+++|++|||||||+++|.+..+...+.+|.+.++....+..+|....+.+||++|++++..+ ...+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--TSAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhCCCCE
Confidence 46799999999999999999999999988777788888887788888866678889999999999888 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+..+.++..++++ ++++||++| |++
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~ 163 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADS---NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVE 163 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCC---CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999988776532 6999999999999764433 66778888887765 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|+.+++.+.+
T Consensus 164 ~lf~~l~~~i~~ 175 (216)
T PLN03110 164 KAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 143
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=3.4e-23 Score=194.18 Aligned_cols=158 Identities=21% Similarity=0.383 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+|+|++|||||||+++|.+..+...+.++.+..+....+.+++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--TRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--HHHHhcCCCEEEE
Confidence 58999999999999999999999988877777777777677777766678889999999988887 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|..+..|+..+...... +.|+++|+||+|+..... ..+++..+++..++. ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 99999999999999999988765433 699999999999976433 367788888888855 999999999 999999
Q ss_pred HHHHHH
Q 005908 582 SRIIWA 587 (670)
Q Consensus 582 ~~l~~~ 587 (670)
+++++.
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 144
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=3.7e-23 Score=202.88 Aligned_cols=171 Identities=22% Similarity=0.332 Sum_probs=134.8
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (670)
.++......+||+|+|++|||||||+++|++..+....++...... ....++...+.+.+|||||++++..++..+++.
T Consensus 6 ~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 6 GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 4455566789999999999999999999999887543333222221 233444556889999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+|++|+|||++++++|+.+.+.|...+.... .+.|+++|+||+|+.....+ . .+....+....+ .++++|||++
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~SAk~ 161 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-S-REEGMALAKEHG--CLFLECSAKT 161 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-C-HHHHHHHHHHcC--CEEEEEeCCC
Confidence 9999999999999999999877887776542 36899999999999866554 2 333455556655 3699999999
Q ss_pred CCCchHHHHHHHHHHcCC
Q 005908 161 MIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~ 178 (670)
|.|++++|+.+.+.+...
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 162 RENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988653
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=1.1e-23 Score=198.59 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=118.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||+++|..+.+....|++. .... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g-~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG-FNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcc-cceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 467999999999999999999999877765444432 2221 2334678999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--Hhc-cCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFR-EIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~SA~~~~gi~ 165 (670)
||++++.+++++...|.+.+... .+++|++||+||+|+.... .. +.+..... ... ...++++|||++|.||+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~-~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CH-HHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999999886555555432 3579999999999986531 11 22222221 111 11258999999999999
Q ss_pred HHHHHHHH
Q 005908 166 DVFYYAQK 173 (670)
Q Consensus 166 ~l~~~i~~ 173 (670)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99998864
No 146
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=3.2e-23 Score=204.14 Aligned_cols=190 Identities=18% Similarity=0.304 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcc-cccEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT 501 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~-~ad~v 501 (670)
+||+++|++|||||||+++|+++.+. ..+.++.+.++....+.+.+....+.+||++|++. .+ ...++. .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~--~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WT--EDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HH--HhHHhhcCCCEE
Confidence 58999999999999999999988876 55556665456667777776677888999999972 22 334556 89999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+....... ++|+|+|+||+|+.+.+. ..++...++..+++. ++++||++| |+++
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~ 153 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDE 153 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence 99999999999999999999887764333 699999999999976443 355667788888875 999999999 9999
Q ss_pred HHHHHHHHHhCCCCCCCCCc---ccccHHHHHHHhhhhhhhhcc
Q 005908 580 VFSRIIWAAEHPHLNIPETE---TGRNRKRYRHLVNSSLVFVSG 620 (670)
Q Consensus 580 l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 620 (670)
+|+.+++.+........... ....+.|+..++.+|...+..
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~ 197 (221)
T cd04148 154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGK 197 (221)
T ss_pred HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHH
Confidence 99999998864443332222 234455667677777766553
No 147
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=3.4e-23 Score=199.36 Aligned_cols=162 Identities=22% Similarity=0.351 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
+||+|+|++|||||||+++|.++.+...+.+|++..+.. .+..+ +....+.+||++|++.+..+ ...+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRL--RPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHH--HHHhCCCCCEEE
Confidence 589999999999999999999999887777777766543 34454 55668889999999988887 777899999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|||++++.||+.+. .|+..+..... +.|+++|+||+|+.... ....++++++..++..+++++||++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCP----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 999999999999986 58777765432 68999999999997532 23678888999998856999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 005908 576 DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~ 592 (670)
|++++|+.+.+.+....
T Consensus 154 ~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 154 NVEEVFDTAIEEALKKE 170 (187)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999886543
No 148
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=2.7e-23 Score=197.71 Aligned_cols=163 Identities=24% Similarity=0.368 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+.||+|+|++|||||||+++|.++.|...+.++... ......+....+.+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 368999999999999999999999987664443332 2233445556778999999999988888878899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
|++++++++.+...|...++...+++|+++|+||+|+...... .........+++.++. .++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA-FGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC-cEEEEecccc
Confidence 9999999999977799988876678999999999998653210 0112334555666553 3799999999
Q ss_pred CCCchHHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKAV 175 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~ 175 (670)
|.||+++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 149
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=3.8e-23 Score=195.38 Aligned_cols=161 Identities=22% Similarity=0.318 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++||+++|++|||||||+++|.++.+...+.++.+. ......+....+.+.+|||||++++..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999999887664443332 2233445566688999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++++++.... |...+.+. ..+.|+++|+||+|+...+.. ..+....+++.++. .+++++||++|.||+++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV--SREDGVSLSQQWGN-VPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence 9999999999985 88877652 347999999999999766554 23334556666653 379999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
+++.+.++
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99988654
No 150
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=3.1e-23 Score=199.73 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.++.|...+.++.+... ....+....+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998765433333222 23344455788999999999998889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+++.+.. |+..++... .+.|+++|+||+|+.+...+ ..+....++...+ .+++++||++|.||+++|+
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLN--IPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999986 998887653 46899999999999866554 2333455555554 2799999999999999999
Q ss_pred HHHHHHcCC
Q 005908 170 YAQKAVLHP 178 (670)
Q Consensus 170 ~i~~~~~~~ 178 (670)
++.+.+...
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999987643
No 151
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=6.4e-23 Score=194.16 Aligned_cols=161 Identities=19% Similarity=0.330 Sum_probs=138.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh-hhhchHhhcccccEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT 501 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~ad~v 501 (670)
.+||+++|++|||||||+++++++.+...+.+|.+.++....+.++|....+.+||++|++.+. .+ ...+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSM--VQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhh--HHHhhcCCCEE
Confidence 4799999999999999999999998887777787777777778888777788999999998876 35 66788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeeccc---C-C
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKS---K-D 576 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~---g-~ 576 (670)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+..... ..++.+++++..+++ ++++||++ + |
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~ 156 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPN--EVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDH 156 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCC--CCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCC
Confidence 99999999999999999999988765433 699999999999976543 366778888888765 99999999 7 8
Q ss_pred hHHHHHHHHHHH
Q 005908 577 LNNVFSRIIWAA 588 (670)
Q Consensus 577 v~~l~~~l~~~~ 588 (670)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 152
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=4.9e-23 Score=201.19 Aligned_cols=156 Identities=17% Similarity=0.302 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+|+|.+|||||||+++|+++.+.. +.+|++..+....+ +...+.+||++|++.+..+ ...+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGL--GSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhh--HHHHhccCCEEEE
Confidence 589999999999999999999999864 45677655443322 3466889999999998888 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--------------------CcccHHHHHHHHHHhC
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--------------------YTMAVQDSARVTQELG 563 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~--------------------~~~~~~~~~~~~~~~~ 563 (670)
|||++++.||+.+..|+..+.+.... +.|+|+|+||+|+.+ +....+++..++++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~---~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANE---DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 99999999999999988887765322 689999999999975 2333778889998876
Q ss_pred C-------------CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 564 I-------------EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 564 ~-------------~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
. .+|+++||++| ||+++|+.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2 35999999999 99999999998764
No 153
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=6.6e-23 Score=201.90 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCC--CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc-cCCEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL 88 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~ii~ 88 (670)
+||+++|++|||||||+++|+++.+. ..++++.+ .......+......+.+|||+|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988875 44444332 223444555677889999999987 233445667 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++.+|+.+.+ |+..+.... .++|+|+|+||+|+...+.+ . .+....++..++ .+++++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREV-S-VQEGRACAVVFD--CKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccccee-c-HHHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence 999999999999875 888886643 57999999999999776655 3 333456666665 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+.+.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998884
No 154
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=3.4e-23 Score=195.63 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=128.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCC-eE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
++.+||+++|++|||||||+++|+++.|. ..+.++.+. .. ....+.+..+.+.+||++|++.+..+...+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999987 654444333 22 2334455567899999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|+|||++++.+++.+.+ |+..+... .++|+++|+||+|+.+...+ .....+.+.+.++. ..++++||++|.|+++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGL-PPPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCC-CCCEEEEeccCccHHH
Confidence 99999999999998864 77766432 37999999999999755433 12234556666653 2469999999999999
Q ss_pred HHHHHHHHHcC
Q 005908 167 VFYYAQKAVLH 177 (670)
Q Consensus 167 l~~~i~~~~~~ 177 (670)
+|+.+.+.+..
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999988764
No 155
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=4.4e-23 Score=194.05 Aligned_cols=158 Identities=16% Similarity=0.253 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCeE--eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
+||+++|++|||||||+++|..+ .+..++.++.+... ....+ ....+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 46666544333222 22223 245689999999999988888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|||++++.+++.+. .|+..+....+++|+++|+||+|+.+...+ . ......+...++ .++++|||++|.||+++
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKAEV-T-DAQAQAFAQANQ--LKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccCC-C-HHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence 999999999999887 599888776668999999999999766544 2 222344555554 36999999999999999
Q ss_pred HHHHHHHH
Q 005908 168 FYYAQKAV 175 (670)
Q Consensus 168 ~~~i~~~~ 175 (670)
|+.+.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 156
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.90 E-value=4e-23 Score=199.25 Aligned_cols=155 Identities=16% Similarity=0.261 Sum_probs=133.9
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC
Q 005908 429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS 508 (670)
Q Consensus 429 vG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s 508 (670)
+|.+|||||||+++|+.+.+...+.+|++.++....+.+.+....+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--RDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhcCCCEEEEEEECC
Confidence 699999999999999998888777788887777777777777788999999999999988 788999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 509 DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 509 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
++.||+.+..|+.++.+... +.|+++|+||+|+..+....+. ..+++..++. +++|||++| ||.++|++|++.
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999987653 6999999999999764433333 4677777776 999999999 999999999998
Q ss_pred HhCC
Q 005908 588 AEHP 591 (670)
Q Consensus 588 ~~~~ 591 (670)
+...
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 7543
No 157
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=7.5e-23 Score=191.84 Aligned_cols=159 Identities=19% Similarity=0.338 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|.+..+...+.++.+.++....+...+....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--TSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhCCCCEEEE
Confidence 58999999999999999999999887767788887777676777756678889999999888777 6778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
|+|++++.+|+.+..|+..+....... +.|+++|+||+|+.......++..++++..+++ ++++||++| |++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNN--DIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQAFE 155 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCC--CCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHH
Confidence 999999999999999999988776544 799999999999986555677788888888776 999999999 9999999
Q ss_pred HHHHH
Q 005908 583 RIIWA 587 (670)
Q Consensus 583 ~l~~~ 587 (670)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
No 158
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=2.9e-23 Score=195.55 Aligned_cols=157 Identities=23% Similarity=0.321 Sum_probs=124.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCcc-chhhhHHHhccCCEEEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ii~v~d 91 (670)
||+++|++|||||||+++++.+.+...++++. ........++...+.+.+|||||++. +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 69999999999999999999988876654433 22223344556677899999999885 34557788999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC-CCchHH
Q 005908 92 CNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-IQVPDV 167 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~-~gi~~l 167 (670)
++++.+|+.+.. |...+... ..++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++| .||+++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQV--STEEGEKLASELG--CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCcc--CHHHHHHHHHHcC--CEEEEeCCCCCchhHHHH
Confidence 999999999974 88888764 348999999999998765554 2344566777776 37999999999 599999
Q ss_pred HHHHHHHH
Q 005908 168 FYYAQKAV 175 (670)
Q Consensus 168 ~~~i~~~~ 175 (670)
|+.+.+.+
T Consensus 156 f~~l~~~~ 163 (165)
T cd04146 156 FHELCREV 163 (165)
T ss_pred HHHHHHHH
Confidence 99998765
No 159
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=4.2e-23 Score=196.23 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=132.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEE
Q 005908 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (670)
Q Consensus 426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~ 505 (670)
|+|+|++|||||||+++|.++.+...+.+|....+. ..+..+|....+.+||++|++.+..+ ...+++.+|++|+||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRL--RPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchh--chhhcCCCCEEEEEE
Confidence 589999999999999999999998877777765544 45566766667889999999988877 677889999999999
Q ss_pred ECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEEee
Q 005908 506 DSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 506 D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~vS 571 (670)
|++++.||+.+. .|+..+..... +.|+++|+||+|+.... ...+++.++++.++..+++++|
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCP----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 999999999986 58888876543 69999999999997532 2356678899999875699999
Q ss_pred cccC-ChHHHHHHHHHHHhC
Q 005908 572 MKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~ 590 (670)
|++| |++++|+.+++.+.+
T Consensus 154 a~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 154 ALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCCHHHHHHHHHHHhcC
Confidence 9999 999999999988753
No 160
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=5.5e-23 Score=192.99 Aligned_cols=159 Identities=25% Similarity=0.442 Sum_probs=142.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|+++||||||+++|.++.+...+.+|.+.+.....+...+....+.+||++|++.+..+ ....++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL--RDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH--HHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 7999999999999999999999998888888877777788888877788999999999888887 67789999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
||++++.||+.+..|+..+...... +.|+++|+||.|+.+ .....+++++++++++ .+++++||+++ |+.++|.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHHH
T ss_pred ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999988763 589999999999987 4444788999999999 45999999999 9999999
Q ss_pred HHHHHHh
Q 005908 583 RIIWAAE 589 (670)
Q Consensus 583 ~l~~~~~ 589 (670)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 161
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=8.7e-23 Score=197.55 Aligned_cols=160 Identities=18% Similarity=0.289 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
+||+|+|++|||||||+++|+++.+.. .+.+|++..+....+.++|....+.+||++|++++..+ ...+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM--SRIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHhhcCCCCEEE
Confidence 489999999999999999999998874 46678887777777888877778889999999888887 677889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
+|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.. ....++.+++..++.. ++++||++| |
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 153 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLEE----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQN 153 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcCC----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence 99999999999999999998876532 68999999999986432 1245667777777765 999999999 9
Q ss_pred hHHHHHHHHHHHhC
Q 005908 577 LNNVFSRIIWAAEH 590 (670)
Q Consensus 577 v~~l~~~l~~~~~~ 590 (670)
++++|+.+.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998854
No 162
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=5.7e-23 Score=194.50 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccch-hhhHHHhccCCEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL 88 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ii~ 88 (670)
.+||+++|++|||||||+++++.+.+.....++.+... ....+....+.+.+|||+|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999887665433332221 233445566899999999998876 467888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc---CCC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ 163 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---~~g 163 (670)
|||++++.++..+.. |...+.... .++|+++|+||+|+...+.+ ..+....+++... .++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence 999999999999984 998887643 57999999999999876655 2344556666664 4799999999 899
Q ss_pred chHHHHHHHHHH
Q 005908 164 VPDVFYYAQKAV 175 (670)
Q Consensus 164 i~~l~~~i~~~~ 175 (670)
|+++|..+.+.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999888754
No 163
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=1e-22 Score=190.85 Aligned_cols=158 Identities=19% Similarity=0.353 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|+++.+...+.++++.++....+..+|....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL--IPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEEE
Confidence 48999999999999999999999998877788887777787888866677889999999888887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+.... ...++...+++..+.. ++++||++| |+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELF 154 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999988765432 59999999999995433 3467778888888765 999999999 999999
Q ss_pred HHHHHH
Q 005908 582 SRIIWA 587 (670)
Q Consensus 582 ~~l~~~ 587 (670)
+++.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999874
No 164
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=7.9e-23 Score=197.83 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+||+|+|++|||||||+++|+++.|.. .+.++.+... ....+....+.+.+|||+|++++..+...+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 3443333322 2344555567889999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC--ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
||++++.+++.+. .|+..++...++.|+++|+||+|+..... .....+....++..++ .+++++||++|.||+++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--AQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence 9999999999987 49999987766899999999999864321 1011233455566654 36899999999999999
Q ss_pred HHHHHHHHcC
Q 005908 168 FYYAQKAVLH 177 (670)
Q Consensus 168 ~~~i~~~~~~ 177 (670)
|+.+.+.+..
T Consensus 158 ~~~i~~~~~~ 167 (193)
T cd04118 158 FQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 165
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=1.6e-22 Score=197.95 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=141.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+.+....+.+||++|++.+..+ +..+++.+|+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--~~~~~~~ad~ 81 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--TRSYYRGAAG 81 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCCE
Confidence 35699999999999999999999999988887788887777777777766667889999999888887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+ ...++.+++++.++++ ++++||++| |++
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~ 157 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE 157 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999887665432 69999999999997654 3467888899988875 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|+++++.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887743
No 166
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=1e-22 Score=191.33 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=129.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-e-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++||+++|++|||||||+++|+++++.....++.+. . .....++...+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999987643332332 2 23445666778999999999998888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
+|++++++++.... |+..+.... ++.|+++|+||+|+...... ..+....+....+ .+++++||++|.|+.++|
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999884 888886654 67999999999998865443 2234455666665 379999999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
+++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998865
No 167
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=9.1e-23 Score=194.70 Aligned_cols=158 Identities=12% Similarity=0.132 Sum_probs=120.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||++++..+.+....|++ +.... .+...++.+.+|||||++.+..++..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~-g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCc-ceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 45789999999999999999999988776544443 22222 2445678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccCC
Q 005908 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI 162 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~~ 162 (670)
||+++++++......+...+.. ..+++|++||+||+|+.+.... +.+...++- ...+++|||++|+
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH-------HHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999999887644444433 2357999999999998754221 222222221 1136689999999
Q ss_pred CchHHHHHHHHHHcC
Q 005908 163 QVPDVFYYAQKAVLH 177 (670)
Q Consensus 163 gi~~l~~~i~~~~~~ 177 (670)
||.++|+++.+.+..
T Consensus 165 gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 165 GLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887653
No 168
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=1.8e-22 Score=189.75 Aligned_cols=160 Identities=23% Similarity=0.409 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--TSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhCCCCEEEE
Confidence 58999999999999999999999887777677777777777888766668889999999888877 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+++.+..|+..+..+... ++|+++|+||+|+.+.. ...+.++++++.+++. ++++||++| |+++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 99999999999999999998876532 69999999999987643 3467788888888876 999999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
+.+.+.+.
T Consensus 155 ~~i~~~~~ 162 (164)
T smart00175 155 EELAREIL 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 169
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=2.2e-22 Score=189.31 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+||+++|++|||||||++++.+. .+...+.+|++.++....+.++ +....+.+||++|++.+..+ ...+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM--VSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH--HHHHhCCCCE
Confidence 58999999999999999999864 5666777888777666666655 35578889999999888887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+|..+..|+..+..... +.|+++|+||+|+.+.... ....+.+...++.+ ++++||++| |++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 153 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASK----HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYE 153 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChH
Confidence 9999999999999999999998877642 6999999999999764433 44556677777765 999999999 999
Q ss_pred HHHHHHHHHH
Q 005908 579 NVFSRIIWAA 588 (670)
Q Consensus 579 ~l~~~l~~~~ 588 (670)
++|+.+.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 170
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=1.2e-22 Score=195.33 Aligned_cols=165 Identities=26% Similarity=0.356 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+.||+|+|++|||||||+++|..+.+.....++. ........+....+.+.+|||+|++.+....+.+++.+|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3699999999999999999999887765533322 222223334455677999999999888777777889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC---------CccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|+++.++++.+...|...++...+++|+++||||+|+.+.. .. ...+....+++.++. .++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGA-KKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 99999999999877999998777789999999999985421 11 112345666777763 37999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 005908 162 IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (670)
.||+++|+.+.+.++..
T Consensus 159 ~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 159 EGVDDVFEAATRAALLV 175 (187)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999877543
No 171
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=2.4e-22 Score=188.77 Aligned_cols=159 Identities=24% Similarity=0.372 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+|+++++++...+.+|.+..+....+...+....+.+||++|++++... +..+++.+|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--APMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhccCCEEEE
Confidence 79999999999999999999999988766778887777777888876778899999999888877 6778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|+|++++.++.....|+..+...... +.|+++|+||+|+... ....+....++..++.. ++++||++| |+.++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASP---NIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELF 155 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 99999999999999999998776532 6999999999998743 33466777888888865 999999999 999999
Q ss_pred HHHHHHH
Q 005908 582 SRIIWAA 588 (670)
Q Consensus 582 ~~l~~~~ 588 (670)
+++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998875
No 172
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=1.6e-22 Score=192.26 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||++++..+.+....|++.... . .+....+.+.+|||||+..+...+..+++++|++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNV-E--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccce-E--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 457999999999999999999998777754344432222 1 2234578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc------cCCeEEEeCcccCC
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATTMI 162 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~~~ 162 (670)
||++++.+++...+.|...++.. .+++|++||+||+|+.+.... . ++...++ ....++++||++|.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---A----EITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---H----HHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999999886455444432 357999999999999654221 1 1111111 11247789999999
Q ss_pred CchHHHHHHHHHH
Q 005908 163 QVPDVFYYAQKAV 175 (670)
Q Consensus 163 gi~~l~~~i~~~~ 175 (670)
||+++|+++.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987764
No 173
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1e-22 Score=196.07 Aligned_cols=156 Identities=22% Similarity=0.343 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCCCCCCcc--cceEEE-------EEEcCCCceEEEEEecCChhhHhh
Q 005908 423 VFRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTG--EQYAVN-------VVDQPGGNKKTLILQEIPEEGVKK 487 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin-~l~~~~-----~~~~~~~t~~--~~~~~~-------~vd~~g~~~~~~i~d~~g~~~~~~ 487 (670)
.+||+++|.+|||||||+. ++.++. +...+.||++ +.+... .+.++|....+.+||++|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 665543 3445567774 223222 124566677889999999865 2
Q ss_pred hhchHhhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------
Q 005908 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP------------------- 547 (670)
Q Consensus 488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~------------------- 547 (670)
+ ...+++++|++|+|||++++.||+.+. .|+..+..... +.|+++|+||+||.+
T Consensus 80 ~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccccchhhhccccccccccc
Confidence 3 455889999999999999999999997 58888876643 689999999999864
Q ss_pred -CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 548 -YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
..+..++++++++++++ +|++|||++| ||+++|+.++++
T Consensus 154 ~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 154 ADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 23347889999999998 4999999999 999999999874
No 174
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=1.2e-22 Score=190.83 Aligned_cols=159 Identities=23% Similarity=0.348 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-E-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-R-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.+..+.....++.+.. . ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 699999999999999999999988765533322222 1 23344444578999999999988888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+++.+.. |+..+.... +++|+++|+||+|+...+.. ..+....+.+.++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999885 888887654 68999999999998765443 2344555666665 3699999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
.+.+.+.
T Consensus 156 ~i~~~~~ 162 (164)
T smart00175 156 ELAREIL 162 (164)
T ss_pred HHHHHHh
Confidence 9998764
No 175
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=1.8e-22 Score=190.71 Aligned_cols=161 Identities=25% Similarity=0.398 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++....+.+||++|++.+..+ ...+++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM--RELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhh--hHHHHhhCCEEEE
Confidence 7899999999999999999999998877777777554 466677766678889999999998888 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||++++.+++....|...+.+..... +.|+++|+||+|+...+. ..++...+++.++..+++++||++| |++++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999999999998887654333 699999999999976443 3556677778877556999999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
+++.+.+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 176
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=1.4e-22 Score=188.92 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++++.+.+...+.++ ...+ ...+.+.|....+.+||++|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence 48999999999999999999998887665443 4444 35677776666788999999854 235678999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
|||++++.||+.+..|+..+....... +.|+++|+||.|+.. +....++++++++..+..++++|||++| ||++
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 999999999999999999998765433 689999999999853 2334667788888775345999999999 9999
Q ss_pred HHHHHHHH
Q 005908 580 VFSRIIWA 587 (670)
Q Consensus 580 l~~~l~~~ 587 (670)
+|+.+++.
T Consensus 150 ~f~~~~~~ 157 (158)
T cd04103 150 VFQEAAQK 157 (158)
T ss_pred HHHHHHhh
Confidence 99999864
No 177
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=1.5e-22 Score=189.72 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||+..+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988665444333222 22334444578999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+...... ..+....+.+..+ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999884 888775533 36999999999999655444 2333455555554 4799999999999999999
Q ss_pred HHHHH
Q 005908 170 YAQKA 174 (670)
Q Consensus 170 ~i~~~ 174 (670)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 98764
No 178
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=2.2e-22 Score=196.93 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=131.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+|+|++|||||||+++|++.++.....++.+... ....+....+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3569999999999999999999999988766433333322 22344455678999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ ..+..+.+++.++ .+++++||+++.||++
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEE 158 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999999875 87777554 357999999999999876555 3344566777765 3799999999999999
Q ss_pred HHHHHHHHHcC
Q 005908 167 VFYYAQKAVLH 177 (670)
Q Consensus 167 l~~~i~~~~~~ 177 (670)
+|+++++.+..
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 179
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.7e-23 Score=172.70 Aligned_cols=163 Identities=19% Similarity=0.353 Sum_probs=148.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+|.+|+|+-|||||+|+..|...+|...-+.|++..+..+++.+.|...++.|||++|+++++.+ ++.+++.+-+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav--trsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence 46799999999999999999999999998887789999999999999998999999999999999999 8999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
.++|||++.+.++..+..|+........+ +..+++++||.||...+.. .+++.+|+++.++. +++.|||+| ||+
T Consensus 87 almvyditrrstynhlsswl~dar~ltnp---nt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve 162 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE 162 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCC---ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence 99999999999999999999888766543 5789999999999876544 89999999999998 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
+.|-+..+.+-
T Consensus 163 dafle~akkiy 173 (215)
T KOG0097|consen 163 DAFLETAKKIY 173 (215)
T ss_pred HHHHHHHHHHH
Confidence 99887777653
No 180
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.89 E-value=3.4e-22 Score=189.52 Aligned_cols=165 Identities=19% Similarity=0.312 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+|++.+..+...+.+|.+.++....+.++|....+.+||++|++.+..+ +..+++.+|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--GVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--HHHHhcCCCEEEE
Confidence 58999999999999999999999887777677777777777888876677889999999888887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
|||++++.+++....|...+...... ...++|+++|+||+|+.. .....+..+.+++..+..+++++||++| |++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999999998888877655431 112689999999999984 3334667778888887667999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
++.+.+.+.+
T Consensus 159 ~~~i~~~~~~ 168 (172)
T cd01862 159 FETIARKALE 168 (172)
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 181
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=1e-22 Score=190.42 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+||+++|.+|||||||++++..+.+....|++..... .+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 5899999999999999999988887654444322221 2334578899999999999988999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-Hh-ccCCeEEEeCcccCCCchHHHH
Q 005908 93 NQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF-REIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
+++.+++.+.+.|...++. ...++|++||+||+|+.+... ..+....+.. .. .....++++||++|.||+++|+
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 9999999988645555443 224689999999999965321 1122222211 11 1112478999999999999999
Q ss_pred HHHH
Q 005908 170 YAQK 173 (670)
Q Consensus 170 ~i~~ 173 (670)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 8853
No 182
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=1.3e-22 Score=192.20 Aligned_cols=160 Identities=28% Similarity=0.427 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+++|++..+... .++...............+.+.+|||||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 6899999999999999999999988544 343332333334445667889999999999888888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc---------chhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
++++.++.....+|...+....+++|+++|+||+|+....... ...+....+...++. .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA-IGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC-eEEEEeecCCCC
Confidence 9999999998888999888776789999999999987654320 123344556666653 379999999999
Q ss_pred CchHHHHHHHH
Q 005908 163 QVPDVFYYAQK 173 (670)
Q Consensus 163 gi~~l~~~i~~ 173 (670)
|++++|+.+++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 183
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.7e-24 Score=184.48 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=133.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCccc---------CCceeEEEEeCCCCccchhhhHHHh
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFY---------PDRVPVTIIDTSSSLENKGKLNEEL 80 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~~~ 80 (670)
-+|.+.+|++||||||++.+++.++|... .+++.-..+ +.+.+. ...+.+++|||+|+++|.+++..++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 46888999999999999999999998877 444333333 222221 1246789999999999999999999
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++|-+++++||+++.+||-++.+ |+..++. ++.+.-||++|||+|+.+.+.+ .++....++.+++ .||||+||
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kyg--lPYfETSA 163 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYG--LPYFETSA 163 (219)
T ss_pred HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhC--CCeeeecc
Confidence 99999999999999999999996 9999976 4678889999999999998887 5566788999998 48999999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 005908 159 TTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~ 176 (670)
-+|.||++..+.+...+.
T Consensus 164 ~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVM 181 (219)
T ss_pred ccCcCHHHHHHHHHHHHH
Confidence 999999998887777654
No 184
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.89 E-value=2.8e-22 Score=190.10 Aligned_cols=162 Identities=21% Similarity=0.266 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||++++.+..+.....++.+... ....+....+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999987665433322221 22344455678899999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|++++.+++.+. .|...+.... .++|+++|+||+|+..++.. ..+....+....+. .+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence 999999998886 4777664432 27999999999999854433 23445566666653 479999999999999
Q ss_pred HHHHHHHHHHcCC
Q 005908 166 DVFYYAQKAVLHP 178 (670)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (670)
++|+.+.+.+...
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877643
No 185
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.89 E-value=3.2e-22 Score=187.99 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 91 (670)
+||+++|++|||||||+++++...+.....++ ..........+...+.+.+|||||+..+......+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998887764443 33333334455567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
++++.+++.+.. |...+... ..++|+++|+||+|+...... .......+.+.++ .+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWG--VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHH
Confidence 999999999986 55555443 348999999999999764333 2233455666665 3799999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
.+.+.+.
T Consensus 156 ~l~~~~~ 162 (164)
T cd04139 156 DLVREIR 162 (164)
T ss_pred HHHHHHH
Confidence 9987653
No 186
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=2.2e-22 Score=190.23 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=118.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
||+++|.+|||||||+++|.+..+....|+ .+.... .+...++.+.+|||||+.++...+..+++++|++++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T-~~~~~~--~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPT-IGFNVE--TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CceeEE--EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 689999999999999999999877553333 222111 34456789999999999988888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHH-hc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----cCCeEEEeCcccCCCchHH
Q 005908 94 QQSTLSRLSSYWLPELR-RL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDV 167 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~-~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~gi~~l 167 (670)
++.+++++.. |+..+. .. ..+.|++||+||+|+... + .. +.+..+..... ....+++|||++|.||+++
T Consensus 78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--L-SV-EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--C-CH-HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 9999999886 555553 32 246899999999999643 2 22 22333332111 1125889999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|+++.+.+...
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876543
No 187
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=2.5e-22 Score=190.71 Aligned_cols=156 Identities=19% Similarity=0.383 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||++++.++.+...+.+|..+.+. ..+..++....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKL--RPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhccc--cccccCCCcEEEE
Confidence 58999999999999999999998888777777654443 45666765678889999999888887 6678899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+... ....+++..+++..+..++++
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNP----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 99999999999885 68877775432 6899999999998642 223667888999999867999
Q ss_pred eecccC-ChHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIW 586 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~ 586 (670)
+||++| |++++|+.++-
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999 99999998864
No 188
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=3.3e-22 Score=191.09 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=120.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||++++..+.+....|++ +.... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~-~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTI-GFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCcc-ccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45799999999999999999999888776544433 22221 2344678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchH
Q 005908 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD 166 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~ 166 (670)
||++++.+++.....+.+.++. ...++|++||+||.|+.+.... .+....+... .. ....++++||++|.||++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999887655555443 2247899999999998653221 1111111110 10 011467999999999999
Q ss_pred HHHHHHHHHcC
Q 005908 167 VFYYAQKAVLH 177 (670)
Q Consensus 167 l~~~i~~~~~~ 177 (670)
+|+++.+.+.+
T Consensus 169 ~~~~l~~~i~~ 179 (182)
T PTZ00133 169 GLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 189
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=5e-22 Score=194.84 Aligned_cols=165 Identities=20% Similarity=0.303 Sum_probs=135.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+++|++..+. .+.+|.+.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL--TSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCE
Confidence 45699999999999999999999998774 34567777776677777766678889999999998887 7889999999
Q ss_pred EEEEEECCCcccHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 501 TIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
+++|||++++.+|+.+.. |...+..+.... +.|+++|+||+|+...+.. .++...++..+++. ++++||++| |+
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v 165 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQ--DCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENV 165 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999876 555555443322 5899999999999764433 56677788888765 999999999 99
Q ss_pred HHHHHHHHHHHhCC
Q 005908 578 NNVFSRIIWAAEHP 591 (670)
Q Consensus 578 ~~l~~~l~~~~~~~ 591 (670)
+++|+.|.+.+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (211)
T PLN03118 166 EQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 190
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.7e-22 Score=190.69 Aligned_cols=158 Identities=24% Similarity=0.419 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|.++.+...+.+|....+. ..+..++....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--ccccCCCCCEEEE
Confidence 58999999999999999999999987777677665443 34566655566779999999888877 6678899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||++++.+|+.+. .|...+..... +.|+++|+||+|+.+.. ...++++.+++.++..++++
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAP----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999886 57777765422 69999999999986532 22567788888898767999
Q ss_pred eecccC-ChHHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~ 588 (670)
+||++| |++++|+.+++.+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 999999 9999999998865
No 191
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=4.9e-22 Score=186.26 Aligned_cols=158 Identities=19% Similarity=0.309 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|++..+.....++..... .........+.+.+|||||++.+...++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 6999999999999999999999887665333222222 22333345678999999999988888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++.+++.+.. |...++... .++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--AKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999874 888886653 37899999999999865544 2344455666655 3689999999999999999
Q ss_pred HHHHHH
Q 005908 170 YAQKAV 175 (670)
Q Consensus 170 ~i~~~~ 175 (670)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998764
No 192
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=1.9e-22 Score=189.46 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=119.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC
Q 005908 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (670)
Q Consensus 15 I~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~ 94 (670)
|+++|++|||||||+++|.++.+...+.++.+... ..+...++++.+|||||++++..++..+++++|++|+|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 79999999999999999999887666444333322 2345668899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch--hhhhhHHHHHhccCCeEEEeCccc------CCCchH
Q 005908 95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD 166 (670)
Q Consensus 95 ~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~------~~gi~~ 166 (670)
+.++..... |+..+....+++|+++|+||+|+...+.+... ......++++.+ ..+++|||++ ++||++
T Consensus 80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR--WILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc--eEEEEeeecCCCChhHHHHHHH
Confidence 999998875 66666544468999999999999766543111 112344444433 3688888888 999999
Q ss_pred HHHHHHH
Q 005908 167 VFYYAQK 173 (670)
Q Consensus 167 l~~~i~~ 173 (670)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998763
No 193
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=1e-21 Score=184.07 Aligned_cols=159 Identities=19% Similarity=0.354 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+|+|++..+...+.++++..+....+.+.+....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL--GPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--hHHHhccCCEEEE
Confidence 58999999999999999999999887766667766666666766655567889999999888887 7778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|+|++++.+++.+..|+..+...... ++|+++|+||+|+..... ..+...++++..+.. ++++||++| |+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELF 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999998876543 589999999999985433 356677777777766 899999999 999999
Q ss_pred HHHHHHH
Q 005908 582 SRIIWAA 588 (670)
Q Consensus 582 ~~l~~~~ 588 (670)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998764
No 194
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=6.8e-22 Score=185.30 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||+++|.+..+.....++.+... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999887665443333322 22334455688999999999988888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.+++.+.. |...+.+.. .+.|+++|+||+|+.... . ..+....+....+ .+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENRE-V--TREEGLKFARKHN--MLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCcccccc-c--CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence 9999999999885 888887653 579999999999997332 2 2234556666654 379999999999999999
Q ss_pred HHHHHH
Q 005908 169 YYAQKA 174 (670)
Q Consensus 169 ~~i~~~ 174 (670)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 998765
No 195
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-23 Score=180.86 Aligned_cols=165 Identities=13% Similarity=0.234 Sum_probs=139.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--C-------CceEEEEEecCChhhHhhhhch
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--G-------GNKKTLILQEIPEEGVKKILSN 491 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~--g-------~~~~~~i~d~~g~~~~~~~~~~ 491 (670)
.+-+|...+|++||||||++.++..+.|...-..|.+.++..+.+-.. | ...-+.+|||+|+++++++ +
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL--T 84 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL--T 84 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH--H
Confidence 345789999999999999999999999987776777776664433221 1 1234568999999999999 8
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEe
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v 570 (670)
..++++|-+++++||.++..||-+++.|+.++..+.--. ++-||+++||+||.+.++. ..++.+++.++++| ||++
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfET 161 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFET 161 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeee
Confidence 999999999999999999999999999999987665444 6889999999999987655 78899999999998 9999
Q ss_pred ecccC-ChHHHHHHHHHHHhC
Q 005908 571 SMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~~ 590 (670)
||-+| ||++.++.+...+.+
T Consensus 162 SA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHH
Confidence 99999 999988888777653
No 196
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=1e-23 Score=176.87 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=133.4
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 17 ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
++|++++|||.|+-|+..+.|... .+++.-.++ +-++.+..++++++|||+|+++|.+.+..++++||+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999987776544 444443444 45567778999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908 94 QQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 172 (670)
++.||++.+. |+.++.++.. .+.++++|||+|+..++.+ ..+..+.+++.++ .|+.|+||++|.||+-.|-.|.
T Consensus 82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~--ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYG--IPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHC--CCceeccccccccHhHHHHHHH
Confidence 9999999996 9999988753 6778999999999887776 4566788999998 4899999999999999999998
Q ss_pred HHHcC
Q 005908 173 KAVLH 177 (670)
Q Consensus 173 ~~~~~ 177 (670)
+.+.+
T Consensus 157 ~~l~k 161 (192)
T KOG0083|consen 157 EELKK 161 (192)
T ss_pred HHHHH
Confidence 87753
No 197
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=1.6e-21 Score=183.24 Aligned_cols=160 Identities=24% Similarity=0.428 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||++++++..+...+.+++...+. .....++....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAI--RDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHH--HHHHhhcCCEEEE
Confidence 58999999999999999999999888777777765544 44556656678889999999888887 7789999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|+|++++.+|.....|+..+....... ++|+++|+||+|+... .........+++.++.+ ++++||++| |++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDD--NVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHH
Confidence 999999999999999998888764433 6999999999999763 33456667778888765 999999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
+.+.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T cd04139 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHH
Confidence 99988764
No 198
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=4.9e-22 Score=189.95 Aligned_cols=163 Identities=25% Similarity=0.325 Sum_probs=140.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-CCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
..+||+++|.+|||||+|..+++.+.|...+.+ +...++....+++..+.+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 568999999999999999999999999999544 4455667777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHH-HhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPEL-RRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l-~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|+++++.||+.+.. +...+ +... ..+|+++||||+|+...+.+ ..+....++..++. +|+|+||+.+.||+++
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V--~~eeg~~la~~~~~--~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV--SEEEGKALARSWGC--AFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc--CHHHHHHHHHhcCC--cEEEeeccCCcCHHHH
Confidence 99999999999996 55555 3333 46899999999999988887 44556777888873 6999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|..+.+.+..+
T Consensus 157 F~~L~r~~~~~ 167 (196)
T KOG0395|consen 157 FYELVREIRLP 167 (196)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 199
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-22 Score=169.86 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=139.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.-+|.+|+|+-|||||.|+.+|...+|..+-|.+.+... .-+++.+.+++++||||+|+++|.....+++++|.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 458999999999999999999999999888665444322 234667889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|||++.+.++..+.. |+...+.. +|+..++++|||.|+..++.+ ..++ .+.++.+.+- .++++||++|.||++.
T Consensus 90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv-~yee-ak~faeengl--~fle~saktg~nveda 164 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV-TYEE-AKEFAEENGL--MFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC-cHHH-HHHHHhhcCe--EEEEecccccCcHHHH
Confidence 999999999999986 88888765 578889999999999999888 5544 5777777763 6999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|-+..+.+..+
T Consensus 165 fle~akkiyqn 175 (215)
T KOG0097|consen 165 FLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHh
Confidence 98888877643
No 200
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=9.7e-22 Score=186.64 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=116.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
....+||+++|++|||||||+++|.+..+....++ .+..... +..+++.+.+|||||++.+...+..+++.+|++++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t-~g~~~~~--~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPT-LGFQIKT--LEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCc-cccceEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34578999999999999999999998765433333 2222222 22346889999999999888888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-Hh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh---ccCCeEEEeCcccCCC
Q 005908 89 TYACNQQSTLSRLSSYWLPEL-RR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQ 163 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l-~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~g 163 (670)
|||++++.+++.... |+..+ +. ...++|+++|+||+|+.+... .+.+..+.+.. ....+++++||++|.|
T Consensus 88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALS----EEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCC----HHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 999999999998875 55444 32 235899999999999975432 12223332211 1123799999999999
Q ss_pred chHHHHHHHH
Q 005908 164 VPDVFYYAQK 173 (670)
Q Consensus 164 i~~l~~~i~~ 173 (670)
++++|+++..
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 201
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=7.7e-22 Score=185.83 Aligned_cols=159 Identities=23% Similarity=0.396 Sum_probs=128.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH-hhhhchHhhcccccEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF 503 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad~vll 503 (670)
||+++|++|||||||+++++++.+...+.+++...+. ..+.+.+....+.+||++|++.+ ... ...+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQ--LERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccch--HHHHHHhCCEEEE
Confidence 5899999999999999999998887777677655443 44566656667889999998742 233 5678899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC--ChHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK--DLNN 579 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g--~v~~ 579 (670)
|||++++.||+.+..|+..+..... .. +.|+++|+||+|+...+ ...++...+++.++.+ ++++||++| |+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDR--EIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHS 154 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHH
Confidence 9999999999999999988877543 22 69999999999986543 3366778888888864 999999998 6999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 202
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=4.8e-21 Score=188.55 Aligned_cols=169 Identities=14% Similarity=0.238 Sum_probs=133.5
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (670)
+.+.....+||+++|++|||||||+++++.+.+...+.++.+... .......+.+.+.+|||+|++.+...+..+++.
T Consensus 2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~ 81 (215)
T PTZ00132 2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK 81 (215)
T ss_pred ccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc
Confidence 346677789999999999999999999988887666444444333 222335667899999999999888888899999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
++++++|||+++..++..+. .|+..+.....++|+++|+||+|+.+.. + . .+. ..+....+ ..++++||++|.
T Consensus 82 ~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~~-~~~~~~~~--~~~~e~Sa~~~~ 154 (215)
T PTZ00132 82 GQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-ARQ-ITFHRKKN--LQYYDISAKSNY 154 (215)
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-C-C-HHH-HHHHHHcC--CEEEEEeCCCCC
Confidence 99999999999999999998 4888887766789999999999986432 2 1 122 23444443 369999999999
Q ss_pred CchHHHHHHHHHHcCCCC
Q 005908 163 QVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~~~ 180 (670)
|++++|.++.+.+.....
T Consensus 155 ~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999998875543
No 203
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=6.8e-22 Score=189.33 Aligned_cols=162 Identities=12% Similarity=0.165 Sum_probs=120.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+.+||+++|++|||||||++++..+.+....|+...... ..... ...++.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888765544322221 22222 2357899999999999888889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--Hhcc--CCeEEEeCcccCC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMI 162 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~SA~~~~ 162 (670)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... +....+.. .... ..++++|||++|.
T Consensus 82 v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 82 VVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALSV----SEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCCH----HHHHHHhCccccCCCCceEEEEeecccCC
Confidence 999999999888774 66555432 247999999999998643211 11222221 1111 1258899999999
Q ss_pred CchHHHHHHHHHHcC
Q 005908 163 QVPDVFYYAQKAVLH 177 (670)
Q Consensus 163 gi~~l~~~i~~~~~~ 177 (670)
||+++++++.+.+..
T Consensus 157 gi~~l~~~l~~~l~~ 171 (183)
T cd04152 157 GLQEGLEKLYEMILK 171 (183)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988753
No 204
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=1.9e-21 Score=185.07 Aligned_cols=158 Identities=22% Similarity=0.340 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
.||+|+|++|||||||+++|.++.+...+.+|....+. ..+...+....+.+||++|++.+..+ ...++.++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhc--cccccCCCCEEEE
Confidence 58999999999999999999999988777777776554 34566655667889999999888877 5668899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCCcEE
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (670)
|||++++++|+.+. .|...+..... +.|+++|+||+|+.+.. ......+++++.++..++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~ 154 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence 99999999998885 57777765432 68999999999986532 11456777888887767999
Q ss_pred eecccC-ChHHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~ 588 (670)
+||++| |++++|+++.+.+
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 155 CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred eccccCcCHHHHHHHHHHHh
Confidence 999999 9999999998764
No 205
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=2.4e-21 Score=183.14 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=125.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|++|||||||++++.++.+.....++.+... ....+.+..+.+.+|||||+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998776654333222111 22334455578999999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||+++..+++.+. .|...++... .+.|+++|+||+|+.+.+.+ ..+....+..... .++++|||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence 999999999999887 4888887644 37999999999999766554 2233344444443 3799999999999999
Q ss_pred HHHHHHHHH
Q 005908 167 VFYYAQKAV 175 (670)
Q Consensus 167 l~~~i~~~~ 175 (670)
+|+.+.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 206
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=1.8e-21 Score=183.57 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=118.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+++|.+|||||||+++|..+.+.. +.||++.++. .+.. ....+.+||++|++.+..+ +..+++++|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 45899999999999999999999877653 3466665443 3332 4577889999999998887 78899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC---C-CCcEEeecccC-C
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG---I-EPPIPVSMKSK-D 576 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---~-~~~~~vSA~~g-~ 576 (670)
++|||++++.+|.....|+.++....... ++|+++|+||+|+.+. ...++++++.+... . .+++++||++| |
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g 157 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 157 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCccC-CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence 99999999999998888887775432212 5899999999998752 23444444432111 1 14799999999 9
Q ss_pred hHHHHHHHHH
Q 005908 577 LNNVFSRIIW 586 (670)
Q Consensus 577 v~~l~~~l~~ 586 (670)
++++|++|.+
T Consensus 158 v~~~~~~l~~ 167 (168)
T cd04149 158 LYEGLTWLSS 167 (168)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 207
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=186.64 Aligned_cols=166 Identities=23% Similarity=0.387 Sum_probs=146.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|.+|||||+|..+|.+..|...++||+.+.+. +.+.++|+...+.|+|++|++++..+ ...+++.+|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~-k~~~v~~~~~~l~ilDt~g~~~~~~~--~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR-KELTVDGEVCMLEILDTAGQEEFSAM--RDLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccce-EEEEECCEEEEEEEEcCCCcccChHH--HHHhhccCcEEE
Confidence 589999999999999999999999999999999986554 55666677888889999999888888 788999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+||+++++.||+.+..+...+.+..... ..|+++||||+|+.. +.+..++++.++..++++ ++++||+.+ |++++
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDEV 156 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHHH
Confidence 9999999999999999999996554444 689999999999998 455588899999999998 999999999 99999
Q ss_pred HHHHHHHHhCCCCC
Q 005908 581 FSRIIWAAEHPHLN 594 (670)
Q Consensus 581 ~~~l~~~~~~~~~~ 594 (670)
|..+.+.+..+...
T Consensus 157 F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 157 FYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999988764443
No 208
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=5.9e-21 Score=180.50 Aligned_cols=161 Identities=21% Similarity=0.328 Sum_probs=132.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+... ...+++.+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI--TQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence 4589999999999999999999988777666667666666666777755667889999999888876 67889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+.. ....+.+.+.... +++++||++| |+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDNVEK 159 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHHH
Confidence 9999999999999999999888765432 5899999999999754433 4445666666664 4999999999 9999
Q ss_pred HHHHHHHHH
Q 005908 580 VFSRIIWAA 588 (670)
Q Consensus 580 l~~~l~~~~ 588 (670)
+|+.+.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 209
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=2.6e-21 Score=180.78 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
||+++|++|||||||++++..+.+....|+..... . .+...++.+.+|||||+..+...+..+++.+|++|+|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV-E--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe-E--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 69999999999999999998877765444322221 1 23345789999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchHHHHH
Q 005908 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
++.++....+.|...++.. ..++|+++|+||+|+.+.... .+....+... .. ...++++|||++|.||+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 9988877665555555432 247999999999998653211 1111111111 00 0126999999999999999998
Q ss_pred HHH
Q 005908 171 AQK 173 (670)
Q Consensus 171 i~~ 173 (670)
+.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 864
No 210
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=2.8e-21 Score=184.78 Aligned_cols=163 Identities=20% Similarity=0.213 Sum_probs=126.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
..||+|+|++|||||||++++.+..+.....++. ............++.+.+|||||+.++......++..+|++++||
T Consensus 1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999988866543333 223333344445678899999999998888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|+++..+++.+...|...++.. ..+.|+++|+||+|+...+.. . .+....+...++ .+++++||++|.|+.++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-S-TEEGKELAESWG--AAFLESSARENENVEEAFE 156 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999986444444433 247899999999999765443 2 233455566665 3799999999999999999
Q ss_pred HHHHHHcCC
Q 005908 170 YAQKAVLHP 178 (670)
Q Consensus 170 ~i~~~~~~~ 178 (670)
++.+.+...
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999877543
No 211
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=2.5e-21 Score=187.87 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
||+++|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||+|+..+..++..+++.+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 699999999999999999999988776444332222 2233334457899999999999888888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCC-CCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
+++.+++.+.. |...+.... .++|+++|+||+|+... ..+ ......+.....++ .+++++||++|.||+++|+
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v-~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQV-PAKDALSTVELDWN--CGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccc-cHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHH
Confidence 99999999874 777665532 47999999999999763 333 22222222212222 3689999999999999999
Q ss_pred HHHHHHcC
Q 005908 170 YAQKAVLH 177 (670)
Q Consensus 170 ~i~~~~~~ 177 (670)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (198)
T cd04147 157 ELLRQANL 164 (198)
T ss_pred HHHHHhhc
Confidence 99987753
No 212
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=2.2e-21 Score=181.39 Aligned_cols=156 Identities=20% Similarity=0.340 Sum_probs=124.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
||+|+|++|||||||++++++..+.....++..... ....+....+.+.+||+||+..+......+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 699999999999999999998887776544433222 2233334468899999999998888889999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
++++++.++.. |...+.... ..+|+++|+||+|+...... ..+....+...++ .+++++||++|.|++++|+.
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence 99999999886 655554433 48999999999999875444 2344566666665 47999999999999999999
Q ss_pred HHHH
Q 005908 171 AQKA 174 (670)
Q Consensus 171 i~~~ 174 (670)
+.+.
T Consensus 156 l~~~ 159 (160)
T cd00876 156 LVRE 159 (160)
T ss_pred HHhh
Confidence 8864
No 213
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=3.3e-21 Score=183.96 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=122.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|.+|||||||++++..+++.. +.||++..+ ..++. ....+.+||++|++.+..+ +..+++++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCE
Confidence 345899999999999999999999877753 456666443 33443 4567889999999999888 8889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+|+|||+++++++.....++..+....... ++|++||+||+|+.+.. ..+++.+.+++. .++++||+
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~--~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhC--CCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCC
Confidence 999999999999988887776664322112 68999999999987632 234555555543 24579999
Q ss_pred cC-ChHHHHHHHHHHHhC
Q 005908 574 SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~ 590 (670)
+| |+.++|++|.+.+..
T Consensus 162 ~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 99 999999999988764
No 214
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.87 E-value=1.4e-21 Score=183.37 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+...++.+.+|||||++++...+..+++.+|++|+|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998763 4333333332221 2335678999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH--H-hccCCeEEEeCcccCCCch
Q 005908 93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP 165 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~~~gi~ 165 (670)
+++.++..... |+..+... ..++|+++|+||+|+...... +.+..... . .....++++|||++|.|++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA----VKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH----HHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 99999887764 55555332 247999999999999754221 11111111 1 0111258999999999999
Q ss_pred HHHHHHHH
Q 005908 166 DVFYYAQK 173 (670)
Q Consensus 166 ~l~~~i~~ 173 (670)
++|+++.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99998754
No 215
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=2e-21 Score=184.61 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=117.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||++++..+.+....|+.... . ..+...++.+.+|||||++.+...+..+++++|++++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~-~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN-V--EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc-e--EEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 35689999999999999999999988876544433222 2 13334578999999999998888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCchH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD 166 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~~ 166 (670)
+|+++++++....+.|...++.. ..++|+++++||+|+..... .++..+.+... .. ...++++|||++|.||++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999988876555555432 24799999999999865321 12211222100 00 112689999999999999
Q ss_pred HHHHHHH
Q 005908 167 VFYYAQK 173 (670)
Q Consensus 167 l~~~i~~ 173 (670)
+|+++.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9998864
No 216
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=4.7e-21 Score=178.51 Aligned_cols=156 Identities=23% Similarity=0.440 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+|++.+..+...+.+|.+.++....+..++....+.+||++|+..+... ...+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--TPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--HHHHhcCCCEEEE
Confidence 58999999999999999999999998887778887777777777765677889999999888877 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|+|+++++++..+..|+..+...... +.|+++|+||+|+. ......++..+++...+.+ ++++||++| |+++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPE---NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELF 154 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHH
Confidence 99999999999999999988877532 59999999999997 4444577788888887665 999999999 999999
Q ss_pred HHHH
Q 005908 582 SRII 585 (670)
Q Consensus 582 ~~l~ 585 (670)
+.|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 217
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=4.6e-21 Score=182.16 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=118.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+++|.+|||||||++++..+.+. .+.||++..+. .+.. ....+.+||++|++.+..+ +..+++++|++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~--~~~~~~~ad~i 84 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPL--WRHYYTNTQGL 84 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHH--HHHHhCCCCEE
Confidence 4589999999999999999999877764 34567665443 2333 3467889999999998887 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeeccc
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~~ 574 (670)
|+|||++++.+++....|+..+....... +.|+++|+||+|+.+.. . .+++.+.++.. .++++||++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPDAM-K---AAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCcccCC-C---HHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 99999999999999888888775432212 58999999999997532 1 22333333322 256899999
Q ss_pred C-ChHHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWAA 588 (670)
Q Consensus 575 g-~v~~l~~~l~~~~ 588 (670)
| |++++|++|.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 9 9999999998765
No 218
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.87 E-value=2.8e-21 Score=180.59 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||++++..+.+. .+.||++..+. .+.. ....+.+||++|++++..+ +..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEEEE
Confidence 48999999999999999999887776 35577665443 3332 4577889999999988887 7889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH----HhCCCCcEEeecccC-ChH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSA~~g-~v~ 578 (670)
|||++++.+|.....++..+....... ++|+++|+||+|+.+.....+....+.. ..++ .++++||++| |++
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~ 150 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLY 150 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHH
Confidence 999999999999988887775432222 5899999999999753221122222211 0011 3679999999 999
Q ss_pred HHHHHHHH
Q 005908 579 NVFSRIIW 586 (670)
Q Consensus 579 ~l~~~l~~ 586 (670)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99998864
No 219
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=5.9e-21 Score=183.54 Aligned_cols=166 Identities=22% Similarity=0.341 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
.||+|+|++|||||||+++|..+.+...+.+|....+. ..+...+....+.+||++|++.+... ....+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERL--RPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhcccc--chhhcCCCCEEEE
Confidence 48999999999999999999988877666666655443 34555655567789999999877765 4557899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-----------cccHHHHHHHHHHhCCCCcEEee
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-----------TMAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~vS 571 (670)
|||+++.++|+.+. .|+..+..... +.|+++|+||+|+.+. ....+....+++.++..+++++|
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 154 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCP----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS 154 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence 99999999999986 58888876543 5999999999998542 12246678888999876799999
Q ss_pred cccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908 572 MKSK-DLNNVFSRIIWAAEHPHLNIP 596 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~~~~~~~ 596 (670)
|++| |++++|+.+.+.+..-+.+.|
T Consensus 155 a~~~~~v~~~f~~l~~~~~~~~~~~~ 180 (187)
T cd04129 155 ALTGEGVDDVFEAATRAALLVRKSEP 180 (187)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCccc
Confidence 9999 999999999988765554433
No 220
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=3.6e-21 Score=179.31 Aligned_cols=155 Identities=23% Similarity=0.325 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+||+++|++|||||||++++.+..+.....++.+... .........+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988776333333222 22333345688999999999988888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|++++++++.+.. |+..+.... .++|+++|+||+|+...... ..+....+....+ .+++++||++|.|++++++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence 9999999999885 888887764 57999999999999744443 3344566666644 4799999999999999999
Q ss_pred HHH
Q 005908 170 YAQ 172 (670)
Q Consensus 170 ~i~ 172 (670)
++.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 875
No 221
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=8.6e-21 Score=178.83 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|||||||+++|.++.+...+. ++...+. ......+....+.+||++|.+.+... ...+++.+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEIT-IPADVTPERVPTTIVDTSSRPQDRAN--LAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceE-eeeeecCCeEEEEEEeCCCchhhhHH--HhhhcccCCEEEE
Confidence 489999999999999999999998866543 3333333 22344556678889999998777665 5667899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC-CCCcEEeecccC-Ch
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG-IEPPIPVSMKSK-DL 577 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~vSA~~g-~v 577 (670)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.... .+....+++.+. ..+++++||++| |+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 99999999999875 57777766543 6999999999999775432 233444444443 346999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|+.+.+.+.+
T Consensus 153 ~~lf~~~~~~~~~ 165 (166)
T cd01893 153 SEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987753
No 222
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=8.6e-21 Score=184.15 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=128.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|.+|||||||+++|+++.+...+.+|+.. .....+.+.|....+.+||++|+..+..+ ...++..+|++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAM--RKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHH--HHHHhhcCCEEEEE
Confidence 6899999999999999999999888776666653 44455666755567889999999888877 67788999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-c-ccHHHHHHHHH-HhCCCCcEEeecccC-ChHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-T-MAVQDSARVTQ-ELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~-~~~~~~~~~~~-~~~~~~~~~vSA~~g-~v~~l 580 (670)
||++++.+|+.+..|+..+....... ++|+++|+||+|+... . ...+...+... ..+. +++++||++| |++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDK--FVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVLEV 154 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence 99999999999999998888765543 6999999999999753 2 22323333332 2333 4899999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|+++++.+..
T Consensus 155 ~~~l~~~~~~ 164 (198)
T cd04147 155 FKELLRQANL 164 (198)
T ss_pred HHHHHHHhhc
Confidence 9999998753
No 223
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.86 E-value=1.5e-20 Score=179.75 Aligned_cols=165 Identities=18% Similarity=0.311 Sum_probs=134.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
.||+++|.+|||||||++++.+..+...+.+|+...+ ...+..++....+.+||++|++++..+ ...++..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL--PQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH--HHHHHhhCCEEEE
Confidence 5899999999999999999999888776667776544 344556655566789999999888877 6778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
|||+++..+++.+..|+..+.+..... +.|+++|+||+|+...+.. ......+++.++.+ ++++||++| |+.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAF 155 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 999999999999999988887754333 6899999999999754332 44567777777754 999999999 999999
Q ss_pred HHHHHHHhCCCCC
Q 005908 582 SRIIWAAEHPHLN 594 (670)
Q Consensus 582 ~~l~~~~~~~~~~ 594 (670)
+++.+.+......
T Consensus 156 ~~l~~~~~~~~~~ 168 (180)
T cd04137 156 ELLIEEIEKVENP 168 (180)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988655443
No 224
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=1.1e-20 Score=176.55 Aligned_cols=157 Identities=24% Similarity=0.395 Sum_probs=131.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+|+|++|||||||++++++..+...+.+++.. .....+...+....+.+||++|++.+..+ ....++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAM--RDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHHhcCCEEEEE
Confidence 6899999999999999999998877777677663 44455666644567889999999888877 67888999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
||+++++++..+..|...+....... +.|+++|+||+|+.+. ....+.+.++++.++. +++++||++| |++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDE--DIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKDNINIDEVFK 154 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCcccccceecHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHH
Confidence 99999999999999998887765433 6999999999999873 3346778888888775 4999999999 9999999
Q ss_pred HHHHH
Q 005908 583 RIIWA 587 (670)
Q Consensus 583 ~l~~~ 587 (670)
+|.+.
T Consensus 155 ~l~~~ 159 (160)
T cd00876 155 LLVRE 159 (160)
T ss_pred HHHhh
Confidence 99875
No 225
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=2.8e-21 Score=180.90 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
+|+++|++|||||||+++|.+..+....|+.... ...... ...+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN-VEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc-eEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 6899999999999999999999876554443222 111122 34688999999999988888889999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHH-HHhc--cCCeEEEeCcccCCCchHHHH
Q 005908 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~SA~~~~gi~~l~~ 169 (670)
++.++......+...++.. ..+.|+++|+||+|+..... ..+....+. ..+. ...++++|||++|.||+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 79 DEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 9998888875343333332 24899999999999864321 111111110 1111 112589999999999999999
Q ss_pred HHHH
Q 005908 170 YAQK 173 (670)
Q Consensus 170 ~i~~ 173 (670)
+|.+
T Consensus 156 ~i~~ 159 (160)
T cd04156 156 KLAS 159 (160)
T ss_pred HHhc
Confidence 8854
No 226
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=7.1e-21 Score=179.93 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=120.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|.+|||||||+++|.+..+.. +.+|++..+. .++. ....+.+||++|++.+..+ +..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~--~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPL--WKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchH--HHHHhccCCEEEEE
Confidence 68999999999999999999987653 4566654442 3333 4567889999999888777 77889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-----CCcEEeecccC-ChH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-DLN 578 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSA~~g-~v~ 578 (670)
+|++++.++.....|+..+.+..... +.|+++|+||+|+... ...++++++++..+. .+++++||++| |++
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELR--DALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhC--CCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence 99999999999999988887543222 5899999999999752 344555555543221 14789999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|++|.+.+.
T Consensus 151 ~~f~~l~~~~~ 161 (169)
T cd04158 151 EGLDWLSRQLV 161 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 227
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1e-20 Score=180.81 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=119.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+++|++|||||||++++..+.+.. +.||++..+. .++. ....+.+||++|++.++.+ +..+++++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPL--WRHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 345899999999999999999998877754 4567664443 3443 4567889999999988887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+|+|+|++++.++.....++..+....... ++|+++|+||.|+.+.. ..+ ++...++.. +++++||+
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~---~i~~~l~~~~~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELR--DAVLLVFANKQDLPNAM-STT---EVTEKLGLHSVRQRNWYIQGCCAT 161 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhc--CCCEEEEEeCCCCCCCC-CHH---HHHHHhCCCcccCCcEEEEeeeCC
Confidence 999999999999998887777664432112 58999999999986522 122 233333332 35689999
Q ss_pred cC-ChHHHHHHHHHHHh
Q 005908 574 SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~ 589 (670)
+| |++++|++|.+.+.
T Consensus 162 tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99 99999999988764
No 228
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=9.4e-21 Score=181.42 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
.+||+++|.+|||||||++++.+..+... .+|.+.......+.. ++....+.+||++|++.+..+ +..+++++|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL--WKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--HHHHhccCCEE
Confidence 48999999999999999999998887644 466554444333333 334567889999999888887 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-----CCcEEeecccC-
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK- 575 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSA~~g- 575 (670)
++|+|++++.++.....|+.++....... ++|+++|+||+|+.+. ......+.+...... .+++++||++|
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcC--CCcEEEEEECcCcccc-CCHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence 99999999988888888888777654333 6999999999998652 223334433321111 24789999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005908 576 DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~ 590 (670)
|+++++++|.+.+..
T Consensus 157 gi~~l~~~l~~~l~~ 171 (183)
T cd04152 157 GLQEGLEKLYEMILK 171 (183)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988753
No 229
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.86 E-value=3.5e-20 Score=182.40 Aligned_cols=163 Identities=17% Similarity=0.279 Sum_probs=137.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+++|++|||||||+++++.+.+...+.+|.+..+....+...++...+.+||++|++.+..+ ...++..++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~--~~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL--RDGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHhccCC
Confidence 345699999999999999999999988888777788887777666766767788999999999888877 677889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
++++|||++++.+|..+..|+..+..... +.|+++|+||+|+.+..... ....+++..++. ++++||++| |++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~i~lv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE----NIPIVLVGNKVDVKDRQVKA-RQITFHRKKNLQ-YYDISAKSNYNFE 157 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccCccccCCH-HHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999999876643 69999999999987643333 334566777765 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|.+|++.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 230
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=3.8e-21 Score=181.28 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
+|+++|.+|||||||+++|.+. +...+.++.+.... .+...++.+.+|||||+..+..++..+++++|++|+|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 5899999999999999999977 54443333333332 34456789999999999999899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhh--hhhHHHHHhccCCeEEEeCcccC------CC
Q 005908 94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ 163 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SA~~~------~g 163 (670)
+..+++.+.. |+..+... ..++|+++|+||+|+.+........+ .+..++++.+....+++|||++| .|
T Consensus 78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 9999998875 66666443 24799999999999977543201111 11222222222236788999998 89
Q ss_pred chHHHHHHHH
Q 005908 164 VPDVFYYAQK 173 (670)
Q Consensus 164 i~~l~~~i~~ 173 (670)
+.+.|+|+..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 231
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=8.1e-21 Score=179.85 Aligned_cols=156 Identities=20% Similarity=0.357 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+++|+++.+...+.++...... ..+..++....+.+||++|++.+... ....++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRL--RPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--chhhcCCCCEEEE
Confidence 58999999999999999999999886666566654443 44566666778899999999887766 5667899999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------cHHHHHHHHHHhCCCCcEEe
Q 005908 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AVQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v 570 (670)
|||++++.+|.... .|+..+..... +.|+++|+||+|+.+... ..+...+++..++..+++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC 153 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence 99999998988765 46666665543 699999999999976542 25567778888887569999
Q ss_pred ecccC-ChHHHHHHHHH
Q 005908 571 SMKSK-DLNNVFSRIIW 586 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~ 586 (670)
||++| |++++++.+++
T Consensus 154 Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 154 SALTQEGVKEVFEEAIR 170 (171)
T ss_pred ecCCCCCHHHHHHHHhh
Confidence 99999 99999999875
No 232
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.85 E-value=4.2e-21 Score=180.41 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=119.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
+|+++|.+|||||||+++|.++.+...+.||.+... +.++++...+.+||++|++.+..+ +..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKY--WKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHH--HHHHHhhCCEEEEE
Confidence 489999999999999999999887766667776432 223445678889999999988887 78899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccH-----HHHHHHHHHhCCCCcEEeeccc-----
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-----QDSARVTQELGIEPPIPVSMKS----- 574 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~vSA~~----- 574 (670)
||++++.++.....|+..+..... ++|+++|+||+|+....... ..+..++++.++. ++++||++
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~~----~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~ 149 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHPP----DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPS 149 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCCC----CCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChh
Confidence 999999999988888888765432 69999999999987644322 1234455555554 88999998
Q ss_pred -C-ChHHHHHHHHH
Q 005908 575 -K-DLNNVFSRIIW 586 (670)
Q Consensus 575 -g-~v~~l~~~l~~ 586 (670)
+ ||.++|+.++.
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 8 99999998764
No 233
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=1.9e-20 Score=177.77 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|++|||||||+++|.+..+. .+.+|.+ +....+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~--~~~~~~~~d~ 84 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPY--WRNYFESTDA 84 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 45689999999999999999999988553 3345555 333444444 467789999999888877 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----CCCCcEEeecccC-
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIEPPIPVSMKSK- 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g- 575 (670)
+++|+|++++.+|.....|+..+....... ++|+++|+||+|+.+.. ..++++++.... ...+++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999998888887775432222 69999999999997633 333444443221 1125999999999
Q ss_pred ChHHHHHHHHH
Q 005908 576 DLNNVFSRIIW 586 (670)
Q Consensus 576 ~v~~l~~~l~~ 586 (670)
|++++|+++..
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 234
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=1.5e-20 Score=180.17 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=116.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+.++|+++|.+|||||||++++.++.+....|+. +.+. ..+..+++++.+|||||+..+...+..+++++|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQ-HPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc-ccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 56799999999999999999999998765433332 2222 12334578899999999998888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh---------ccCCeEEEeCcc
Q 005908 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------REIETCVECSAT 159 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~SA~ 159 (670)
+|++++.++......+...++. ...++|+++|+||+|+.... +.++..+.+.... .....+++|||+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 9999999998887544444432 22479999999999986432 1222111110000 012359999999
Q ss_pred cCCCchHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKA 174 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (670)
+|.|++++++++.+.
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999764
No 235
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.85 E-value=1.6e-20 Score=181.28 Aligned_cols=158 Identities=15% Similarity=0.265 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+..||+++|++|||||||++++.++.+....|+. +... ..+...++.+.+|||||+..+...+..+++++|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~-~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTL-HPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc-Ccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 56799999999999999999999988775433332 2222 22334568899999999988888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--------------ccCCeEE
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIETCV 154 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 154 (670)
+|+++..+++.....+...++.. ..+.|+++|+||+|+... + ..+.+....... ....+++
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--V--SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--c--CHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999887775333333322 247999999999998642 2 123333333221 1112589
Q ss_pred EeCcccCCCchHHHHHHHHH
Q 005908 155 ECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~ 174 (670)
+|||++|.|++++|+++.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999998764
No 236
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-22 Score=175.34 Aligned_cols=161 Identities=17% Similarity=0.327 Sum_probs=147.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+|++|+|..+|||||++++++.+-|...+..|++.++..+.+.+.+......+||++|++++..+ +..|+++|.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--tkAyyrgaqa~ 96 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--TKAYYRGAQAS 96 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--HHHHhccccce
Confidence 4599999999999999999999999999999999999888887877777777788999999999999 99999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++||..+|+.||+....|+..+..... .+|.++|-||+|+.+..+. ..+++.+++.+... ++.+|++.. ||..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~~ 171 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVMH 171 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhHH
Confidence 999999999999999999999988776 6999999999999986655 77888999999987 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|.++++.+.
T Consensus 172 vF~YLaeK~~ 181 (246)
T KOG4252|consen 172 VFAYLAEKLT 181 (246)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 237
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.85 E-value=1.6e-20 Score=181.05 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcc-----cCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
+||+++|++|||||||+++|+++.|...+.++.+... ....+ ....+.+.||||+|++++..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998877554443222 11222 1356889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCCCCCCCccchhh---hhhH
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLEE---VMGP 142 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~ 142 (670)
+|+|||++++.|++++. .|+..+... ..++|++|||||+|+.+.+.+ +... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence 99999999999999998 599988652 236899999999999776544 2222 2345
Q ss_pred HHHHhccCCeEEEeCcccCCCc
Q 005908 143 IMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 143 ~~~~~~~~~~~~~~SA~~~~gi 164 (670)
++++++. +.++.++++...+
T Consensus 159 ia~~~~~--~~i~~~c~~~~~~ 178 (202)
T cd04102 159 VAEQGNA--EEINLNCTNGRLL 178 (202)
T ss_pred HHHhcCC--ceEEEecCCcccc
Confidence 6777773 6888888866544
No 238
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=8.5e-22 Score=174.05 Aligned_cols=169 Identities=16% Similarity=0.226 Sum_probs=145.4
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (670)
|........+|++|+|..+|||||++.|++.+-|..++..+.+... ....+....+++.+|||+|+++|...+..+++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 4445566789999999999999999999999999888666555544 23445566788999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+|.+.++||+.+|+.||+...+ |.+.+.+....+|.++|-||+|+.++..+ .....+.+++.+.. .++.+|++..
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked 166 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKED 166 (246)
T ss_pred cccceEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhh
Confidence 9999999999999999999996 99999998889999999999999988776 45566778887763 6999999999
Q ss_pred CCchHHHHHHHHHHcC
Q 005908 162 IQVPDVFYYAQKAVLH 177 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (670)
.||..+|..++..+..
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999887653
No 239
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=2.5e-20 Score=174.13 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
||+++|.+|||||||++++++..+....++ .+.... .+......+.+|||||+..+...+..+++.+|++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-cCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 699999999999999999999885433333 222221 23334688999999999998888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH--hccCCeEEEeCcccCCCchHHHHH
Q 005908 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
++.++......+...++.. ..+.|+++|+||+|+...... ++....+... .....+++++||++|.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHH
Confidence 9999998876333333422 348999999999998764321 1211221111 112237999999999999999998
Q ss_pred HHH
Q 005908 171 AQK 173 (670)
Q Consensus 171 i~~ 173 (670)
+..
T Consensus 155 l~~ 157 (158)
T cd00878 155 LLQ 157 (158)
T ss_pred Hhh
Confidence 864
No 240
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=3.2e-20 Score=174.11 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+|+++|++|||||||+++|.+..+ ...+.+|.+... ..+.. +...+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGL--WEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHH--HHHHHccCCEEEE
Confidence 589999999999999999998764 344446665432 23332 4567889999999988887 7888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH--H-hCCC-CcEEeecccC-ChH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E-LGIE-PPIPVSMKSK-DLN 578 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~-~~~~-~~~~vSA~~g-~v~ 578 (670)
|+|++++.++.....|+..+.+.......++|+++|+||+|+.+... ..+..+... . ...+ +++++||++| |++
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 99999999998888888777653211112699999999999976322 222221111 0 1111 3799999999 999
Q ss_pred HHHHHHHH
Q 005908 579 NVFSRIIW 586 (670)
Q Consensus 579 ~l~~~l~~ 586 (670)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 241
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=4.4e-20 Score=175.38 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=115.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|.+|||||||++++.++.+.. +.+|.+..+. .+.. ....+.+||++|++.+... +..+++.+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSS--WNTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHH--HHHHhhcCCEE
Confidence 35899999999999999999999887765 3466665443 2333 3467888999999888777 77889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC-C
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g-~ 576 (670)
++|+|++++.++.....++..+.+..... ++|+++++||+|+.......+..+.+. +..++ +++++||++| |
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~--~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~g 163 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLR--KAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQGCCALTGEG 163 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEEecccCCCCC
Confidence 99999999988888887777765443222 699999999999876221111122221 11122 4899999999 9
Q ss_pred hHHHHHHHHH
Q 005908 577 LNNVFSRIIW 586 (670)
Q Consensus 577 v~~l~~~l~~ 586 (670)
++++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 242
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.84 E-value=6.2e-20 Score=176.87 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-----CCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-----g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
+||+++|.++||||||+++|+++.+...+.+|++.++..+.+.++ +....+.+||++|++.+..+ +..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--RAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH--HHHHhCcC
Confidence 489999999999999999999999988887888877777766654 34567889999999999988 78899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcC----------------CCCCCCcEEEEEeCCCCCCCccc-----HHHHHH
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE----------------DSGYGVPCLLIASKDDLKPYTMA-----VQDSAR 557 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~----------------~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~ 557 (670)
|++|+|||++++.||+.+..|+.++..... ....+.|++|||||+|+.+++.. ......
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999976421 01126899999999999765422 234556
Q ss_pred HHHHhCCCCcEEeecccC
Q 005908 558 VTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 558 ~~~~~~~~~~~~vSA~~g 575 (670)
++++.+.+ .++.+++.+
T Consensus 159 ia~~~~~~-~i~~~c~~~ 175 (202)
T cd04102 159 VAEQGNAE-EINLNCTNG 175 (202)
T ss_pred HHHhcCCc-eEEEecCCc
Confidence 78888887 788888753
No 243
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=2.8e-20 Score=175.50 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVP------EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
+|+++|++|||||||+++|.+.... ....++.+... ..+...+..+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 5899999999999999999864321 11111111111 123345789999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh----c-cCCeEEEeCccc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATT 160 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~SA~~ 160 (670)
+|+|+++..+++.... |+..+.+. ..++|+++|+||+|+..... ..+ +..+.... + ...+++++||++
T Consensus 79 ~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 79 YVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALS---VEE-IKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCC---HHH-HHHHhccccccccCCceEEEEeeCCC
Confidence 9999999988888775 44444332 24799999999999865422 122 22222221 1 113799999999
Q ss_pred CCCchHHHHHHHH
Q 005908 161 MIQVPDVFYYAQK 173 (670)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (670)
|.|+++++++|.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999998864
No 244
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=7.2e-20 Score=171.38 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
+|+++|++|||||||+++|.++.+... .+|.+.. ...+..+ +...+.+||++|++.+..+ +..++..+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~--~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTV--WKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHH--HHHHhccCCEEEEE
Confidence 589999999999999999999887643 4565533 3455555 5678889999999888777 67789999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH------HHhCCCCcEEeecccC-Ch
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT------QELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~vSA~~g-~v 577 (670)
+|++++.++.....|+..+.+..... +.|+++|+||+|+.... ..+++.... ...+. +++++||++| |+
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 150 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGAL-TAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGL 150 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccCc-CHHHHHHHcCCcccCCCCcE-EEEecccccCCCh
Confidence 99999988888888888776543222 69999999999986522 122222111 11112 4889999999 99
Q ss_pred HHHHHHHHH
Q 005908 578 NNVFSRIIW 586 (670)
Q Consensus 578 ~~l~~~l~~ 586 (670)
+++|++|.+
T Consensus 151 ~~~~~~i~~ 159 (160)
T cd04156 151 AEAFRKLAS 159 (160)
T ss_pred HHHHHHHhc
Confidence 999999864
No 245
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1.2e-19 Score=189.55 Aligned_cols=175 Identities=20% Similarity=0.231 Sum_probs=119.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccc-hhhh-------HHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLEN-KGKL-------NEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~~~-------~~~ 79 (670)
.+.++|+++|++|||||||+|+|++.++....+. ..+++ +...+..++..+.+|||||+.+. ..+. ..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k-~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK-VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC-CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4567999999999999999999999886532121 11111 22334456678999999998532 2111 135
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++++|++++|+|.++ ++......|+..++.. +.|+++|+||+|+.+. ...+ +............++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----~~~~-~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK----YLND-IKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc----cHHH-HHHHHHhcCCCcEEEEEecc
Confidence 789999999999654 4555544577777665 6788899999998643 1222 23333333322469999999
Q ss_pred cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHH
Q 005908 160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCV 195 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 195 (670)
+|.|++++++++.+.+. +.+++|+.+.....+...
T Consensus 200 tg~gv~eL~~~L~~~l~-~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK-ISPWLYAEDDITDLPMRF 234 (339)
T ss_pred CccCHHHHHHHHHHhCC-CCCCCCCCCCCCCCCHHH
Confidence 99999999999987654 456777777666554443
No 246
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=176.72 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=131.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh-----Hhhh-hchHhhcc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-----VKKI-LSNKEALA 496 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-----~~~~-~~~~~~~~ 496 (670)
.--|+|+|+||||||||+|+++|...+++++...+++..+.-+-+. +...+.++||+|-.+ .+.+ ......+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3569999999999999999999999999998544445555555555 466777789988311 1111 12567889
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
++|+++||+|++++.. ......+..+... +.|+++++||+|+...... ....+.+...+.+..++++||++|
T Consensus 85 dvDlilfvvd~~~~~~-~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 85 DVDLILFVVDADEGWG-PGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred cCcEEEEEEeccccCC-ccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 9999999999998644 2334444555442 5899999999999886653 555666666677778999999999
Q ss_pred -ChHHHHHHHHHHHhCCCCCCC-CCcccccHH-HHHHHhhhh
Q 005908 576 -DLNNVFSRIIWAAEHPHLNIP-ETETGRNRK-RYRHLVNSS 614 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 614 (670)
|++.|.+.+...+..-...-| +..+..+.+ ...+++++.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk 199 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREK 199 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHH
Confidence 999999999998855444444 444443333 444555443
No 247
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=2.1e-19 Score=182.61 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=122.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhhH-----hhh-hchHhhcc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKI-LSNKEALA 496 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-----~~~-~~~~~~~~ 496 (670)
+|+++|+||||||||+|+|++..+..+++ .||+. .+..+... +...+.++||+|.... +.+ .....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~--~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN--RISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC--cEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999998876665 34443 23334344 2345788999996321 111 11456789
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
.+|++++|+|+++..+.. ..+...+... +.|+++|+||+|+.+..........++...++.+++++||++|
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 999999999999886654 3344444432 6899999999999764433445556666666657999999999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CCCCcccccHH-HHHHHhhhh
Q 005908 576 DLNNVFSRIIWAAEHPHLN-IPETETGRNRK-RYRHLVNSS 614 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 614 (670)
|++++++.+.+.+...... +++.....+.+ ...+.+++.
T Consensus 151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~ 191 (270)
T TIGR00436 151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK 191 (270)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 9999999999988654443 33333333332 334444443
No 248
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.1e-19 Score=171.52 Aligned_cols=154 Identities=20% Similarity=0.180 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHHhccC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELKRA 83 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~a 83 (670)
+|+++|++|||||||+|+|.+..+... .+.+.... ....+..+++++.+|||||+.+.. .........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL-FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 799999999999999999999876432 22211111 111233456899999999984211 0111112336
Q ss_pred CEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 84 DAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 84 d~ii~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|++|+|+|+++..++ +... .|+..++....++|+++|+||+|+...... . + ...+... +. .++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~~-~~-~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEEL-EG-EEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhhh-cc-CceEEEEeccc
Confidence 899999999987653 4444 478888765568999999999999765433 1 1 2333332 22 36999999999
Q ss_pred CCchHHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKAV 175 (670)
Q Consensus 162 ~gi~~l~~~i~~~~ 175 (670)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 249
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=172.63 Aligned_cols=165 Identities=22% Similarity=0.392 Sum_probs=145.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
..+|++|||+.++|||+|+..+..+.|...+.||.-+.+... +.+ +|....+-+|||+|+++|..+ +...+.++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrl--RplsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRL--RPLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccc--cccCCCCCCE
Confidence 358999999999999999999999999999999988766644 555 477788899999999999987 5679999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (670)
++++|++.++.||+++ .+|+.++..+++ +.|+|+||+|.||.+. ....++..++++++|...
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~cp----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHCP----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhCC----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence 9999999999999996 589999999986 7999999999999842 223788999999999888
Q ss_pred cEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
|+++||++. |+.++|+..++.+..+..
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999 999999999998876543
No 250
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=9.9e-20 Score=169.68 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
.|+|+|++|||||||+++|.+..+.....++.+.... .+..+.+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 3899999999999999999999887764443332222 22334588999999999998888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-H-hccCCeEEEeCcccCCCchHHHHH
Q 005908 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-Q-FREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
+..++......+...++.. ..++|+++|+||+|+.+.... .+....+.. . .....+++++||++|.|+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9988887765344444321 247899999999998754322 111111110 0 111136899999999999999998
Q ss_pred HHH
Q 005908 171 AQK 173 (670)
Q Consensus 171 i~~ 173 (670)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 251
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=2.3e-19 Score=167.59 Aligned_cols=149 Identities=22% Similarity=0.241 Sum_probs=110.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|++|||||||++++..+.+.. +.+|++.++. .++. ....+.+||++|++.+..+ +..++..+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPY--WRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhcCCCEEEEE
Confidence 68999999999999999998877653 3456554432 3333 3467889999999888887 78889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecccC-C
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-D 576 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~~g-~ 576 (670)
+|++++.++.....++..+.+..... ++|+++|+||+|+.+... .. ++.+.++. .+++++||++| |
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~-~~---~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMPGALS-EA---EISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCCCCCC-HH---HHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99999888777666665544322212 699999999999975321 11 22222221 14999999999 9
Q ss_pred hHHHHHHHHH
Q 005908 577 LNNVFSRIIW 586 (670)
Q Consensus 577 v~~l~~~l~~ 586 (670)
++++|++|++
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 252
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=3.8e-19 Score=171.56 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=119.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+++|++|||||||++++.+..+. .+.+|.+... ..+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~--~~~~~~~ad~ 89 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRL--WKDYFPEVDG 89 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHH--HHHHhccCCE
Confidence 34689999999999999999999988764 3445554432 334444 356778999999888776 7788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC---------------CC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG---------------IE 565 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~ 565 (670)
+++|+|+++..++.....++..+.+..... +.|+++|+||+|+.. ....++++.+..... ..
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDEELA--NVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCcccc--CCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeE
Confidence 999999999988988888888876543333 699999999999875 333445555443211 11
Q ss_pred CcEEeecccC-ChHHHHHHHHHH
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
+++++||++| |++++|++|.+.
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhh
Confidence 4899999999 999999999764
No 253
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=2.2e-19 Score=171.42 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--C-----CCCCCCCC------CCeE----eCCcc---cCCceeEEEEeCCCCccch
Q 005908 14 RVVVVGDRGTGKSSLIAAAATES--V-----PEKVPPVH------APTR----LPPDF---YPDRVPVTIIDTSSSLENK 73 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~--~-----~~~~~~~~------~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 73 (670)
+|+++|++|||||||+++|++.. + ...+.++. +.+. ....+ ...++.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998743 1 11111100 1111 11112 4567889999999999999
Q ss_pred hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-Ce
Q 005908 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET 152 (670)
Q Consensus 74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (670)
..+..+++.+|++|+|||+++..++.... .|.... . .++|+++|+||+|+.+.. ..+....+.+.++.. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence 99999999999999999999877766654 244332 2 378999999999986432 222234455554421 24
Q ss_pred EEEeCcccCCCchHHHHHHHHHHc
Q 005908 153 CVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 153 ~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
++++||++|.||+++|+++.+.+.
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhCC
Confidence 899999999999999999988753
No 254
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=4.1e-19 Score=170.21 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=115.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..++|+++|.+|||||||++++.++.+... .||.+... ..+.. +...+.+||++|++.++.+ +..+++++|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRL--WKDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccce--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 3458999999999999999999999876543 34544322 23333 3467788999999888877 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--------------CCC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------IEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------~~~ 566 (670)
+++|+|++++.++.....++..+.+..... ++|+++|+||+|+... ...+++ .+.++ ...
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~-~~~~~i---~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELA--TVPFLILGNKIDAPYA-ASEDEL---RYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCC-CCHHHH---HHHcCCCcccccccccCCceeE
Confidence 999999999988888888877765432222 6999999999998642 222222 22322 124
Q ss_pred cEEeecccC-ChHHHHHHHHHH
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
++++||++| |+++++++|.+.
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 899999999 999999999764
No 255
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=4.1e-19 Score=180.57 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhccC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRA 83 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~a 83 (670)
+|+++|+||||||||+|+|++.++. ...++++.. .+......++..+.+|||||...... ....+++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6999999999999999999998753 333333222 12222334456799999999764311 123567899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
|++++|+|+++..+.+ ..+...++.. ++|+++|+||+|+..... ..+....+....+ ..+++++||++|.|
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~g 151 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGDN 151 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCCC
Confidence 9999999999877665 2466667665 799999999999964321 2222333333332 23699999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCccccccccHH
Q 005908 164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPR 193 (670)
Q Consensus 164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 193 (670)
++++++.+.+.+ ++.++.|+.+.....+.
T Consensus 152 i~~L~~~l~~~l-~~~~~~~~~~~~t~~~~ 180 (270)
T TIGR00436 152 TSFLAAFIEVHL-PEGPFRYPEDYVTDQPD 180 (270)
T ss_pred HHHHHHHHHHhC-CCCCCCCCCcccCCCCH
Confidence 999999998776 44455666665554443
No 256
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=2.5e-19 Score=170.02 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=113.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+.++|+++|++|||||||++++.+..+....++ .+.... .+...+..+.+|||||+..+...+..+++.+|++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~~~--~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPT-QGFNIK--TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 34579999999999999999999998766443332 222211 223346889999999998888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~ 161 (670)
|+|+++..++......+...++.. ..++|+++++||+|+...... ..+...++. ..+++++||++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 999999888887765444444332 247999999999998654321 122222221 114789999999
Q ss_pred CCchHHHHHHHH
Q 005908 162 IQVPDVFYYAQK 173 (670)
Q Consensus 162 ~gi~~l~~~i~~ 173 (670)
+|++++|+++.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999865
No 257
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=3.4e-19 Score=179.24 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=122.0
Q ss_pred cccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-------------CceEEEEEecCChh
Q 005908 417 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEE 483 (670)
Q Consensus 417 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g-------------~~~~~~i~d~~g~~ 483 (670)
+......+||+|+|..|||||||+++|+++.+...+.+|++.++.++.+.+++ ....+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34456679999999999999999999999998887778988877766666542 34568899999999
Q ss_pred hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCC---------CCCCCcEEEEEeCCCCCCCc-----
Q 005908 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED---------SGYGVPCLLIASKDDLKPYT----- 549 (670)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~NK~Dl~~~~----- 549 (670)
.+..+ +..+++++|++|+|||++++.+|+.+..|+..+...... ...++|++||+||+||.+++
T Consensus 95 rfrsL--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 95 RYKDC--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred hhhhh--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 99998 888999999999999999999999999999999876320 01258999999999997642
Q ss_pred --ccHHHHHHHHHHhCCC
Q 005908 550 --MAVQDSARVTQELGIE 565 (670)
Q Consensus 550 --~~~~~~~~~~~~~~~~ 565 (670)
...+++++++++.++.
T Consensus 173 s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccHHHHHHHHHHcCCC
Confidence 1378899999998865
No 258
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=4.6e-19 Score=165.54 Aligned_cols=152 Identities=23% Similarity=0.228 Sum_probs=114.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||+++|.+|||||||++++++.... .+.+|.+... ..+.. ....+.+||++|++.+... +..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPL--WKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHH--HHHHhccCCEEEEE
Confidence 6899999999999999999998743 2334544332 33333 3467888999999888877 77888999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----CCCCcEEeecccC-ChHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g-~v~~ 579 (670)
||++++.++.....++..+....... +.|+++|+||+|+...... ++..+..... ...+++++||++| |+++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELK--GVPLLIFANKQDLPGALSV-SELIEKLGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEeeccCCccccCH-HHHHHhhChhhccCCcEEEEEeeCCCCCCHHH
Confidence 99999999999988888876654333 6999999999999864322 2222222211 1125999999999 9999
Q ss_pred HHHHHHH
Q 005908 580 VFSRIIW 586 (670)
Q Consensus 580 l~~~l~~ 586 (670)
+|+.|..
T Consensus 151 ~~~~l~~ 157 (158)
T cd00878 151 GLDWLLQ 157 (158)
T ss_pred HHHHHhh
Confidence 9999875
No 259
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=2.3e-19 Score=169.19 Aligned_cols=153 Identities=23% Similarity=0.238 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
+|+++|.+|||||||+++|.+. +...+.+|.+.. ...+.. +...+.+||++|++.+..+ +..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGI--WVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHH--HHHHHcCCCEEEEE
Confidence 4899999999999999999987 555555676643 233443 3467889999999888887 78899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-----HHHHHHhCCC-CcEEeecccC---
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-----ARVTQELGIE-PPIPVSMKSK--- 575 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~-~~~~vSA~~g--- 575 (670)
||++++.+++.+..|+..+....... ++|+++|+||+|+.......+.. +.++++.+.. +++++||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVS--GKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCcccc--CCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 99999999999999998887653322 69999999999997744222222 2233222322 4788999995
Q ss_pred ----ChHHHHHHHHH
Q 005908 576 ----DLNNVFSRIIW 586 (670)
Q Consensus 576 ----~v~~l~~~l~~ 586 (670)
|+.+.|++|.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 69999999864
No 260
>COG1159 Era GTPase [General function prediction only]
Probab=99.81 E-value=7.4e-19 Score=171.56 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=129.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 79 (670)
++.-.|+|+|+||||||||+|++++.+.... .|.+ +...+...+..++..+.++||||...-... ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch-hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4556799999999999999999999995443 3331 122255666677889999999998654322 2267
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
+.++|+++||+|++..-.-.+ +..++.++.. +.|+++++||+|...+... .....+.+..... +..++++||+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeecc
Confidence 889999999999887543322 3466777763 7899999999998876442 2233344444443 3479999999
Q ss_pred cCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKR 200 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 200 (670)
+|.|++.+.+.+... ++..++.|+.+.....+....+.+-
T Consensus 156 ~g~n~~~L~~~i~~~-Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 156 KGDNVDTLLEIIKEY-LPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred ccCCHHHHHHHHHHh-CCCCCCcCChhhccCChHHHHHHHH
Confidence 999999999877665 4455667777777766665544443
No 261
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=1.2e-19 Score=166.21 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhhhchHhhccccc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD 499 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~~~~~~~~~~ad 499 (670)
||+++|++|||||||+|+|.+..+. +.+|.+.++.. .+||++|. ..+..+ ...++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~~------------~~iDt~G~~~~~~~~~~~~---~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYND------------GAIDTPGEYVENRRLYSAL---IVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEcC------------eeecCchhhhhhHHHHHHH---HHHhhcCC
Confidence 7999999999999999999988753 23444333322 34677765 223333 23589999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
++++|||++++.++.. ..|... . ..|+++|+||+|+.+.....+..+++++..+..+++++||++| |++
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~----~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASI----F-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHh----c-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 9999999999988754 233322 1 3599999999999764444566777888877767999999999 999
Q ss_pred HHHHHHH
Q 005908 579 NVFSRII 585 (670)
Q Consensus 579 ~l~~~l~ 585 (670)
++|+++.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 262
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=3.7e-19 Score=167.79 Aligned_cols=153 Identities=25% Similarity=0.353 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC------CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~------~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
+|+++|++|||||||+++|.+.... ..+.+|.+..+ ..+..+ ...+.+||++|++.+..+ +..+++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSL--WDKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHH--HHHHhCCC
Confidence 5899999999999999999864322 12223444333 234443 467788999999888877 77889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh----C--CCCcEEeec
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----G--IEPPIPVSM 572 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~--~~~~~~vSA 572 (670)
|++++|+|++++.++.....++..+.+..... +.|+++|+||+|+... ....+..++.+.. + ..+++++||
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEALE--GVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhhc--CCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceEEEEeeC
Confidence 99999999999888888888888776543322 6999999999998763 2233333333321 1 125999999
Q ss_pred ccC-ChHHHHHHHHH
Q 005908 573 KSK-DLNNVFSRIIW 586 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~ 586 (670)
++| |+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999 99999999864
No 263
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=6.6e-19 Score=168.16 Aligned_cols=155 Identities=15% Similarity=0.215 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCCc------ccceEEEE--EEc---CCCceEEEEEecCChhhHh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFS-------ENYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGVK 486 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~-------~~~~~t~------~~~~~~~~--vd~---~g~~~~~~i~d~~g~~~~~ 486 (670)
+|+++|.+|||||||+++|++.... ..+.++. +..+.... +.+ ++....+.+||++|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999974321 1111211 12222222 112 4456678899999999888
Q ss_pred hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-
Q 005908 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 565 (670)
Q Consensus 487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~- 565 (670)
.. +..+++.+|++|+|+|++++.+++....|.... .. ++|+++|+||+|+.+.. .....+++++.+++.
T Consensus 82 ~~--~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YE--VSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDP 151 (179)
T ss_pred HH--HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCc
Confidence 77 778899999999999999987776666654332 21 68999999999986522 233445677777764
Q ss_pred -CcEEeecccC-ChHHHHHHHHHHHh
Q 005908 566 -PPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 566 -~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
+++++||++| |++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 4899999999 99999999988764
No 264
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=1.1e-19 Score=172.24 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=122.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+.+||+++|.+|+|||||++++..+.+....|+.. ... ..+...++.+.+||.+|+..+...|+.+++++|++||
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g-~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG-FNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS-EEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccc-ccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEE
Confidence 3788999999999999999999999876554344322 222 2344477899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH--HHhc--cCCeEEEeCcccCCC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR--EIETCVECSATTMIQ 163 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~SA~~~~g 163 (670)
|+|.++.+.+.+..+.+...+.. ...++|+++++||+|+.+.... +.+.... ..+. ....++.|||.+|+|
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~----~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE----EEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH----HHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh----hHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999999998888766666653 2247999999999998764322 1122111 1221 223689999999999
Q ss_pred chHHHHHHHHHH
Q 005908 164 VPDVFYYAQKAV 175 (670)
Q Consensus 164 i~~l~~~i~~~~ 175 (670)
+.+.++++.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 265
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=6.2e-19 Score=166.76 Aligned_cols=161 Identities=18% Similarity=0.123 Sum_probs=112.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----hHhhh-hchHhhccccc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVKKI-LSNKEALASCD 499 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~~~-~~~~~~~~~ad 499 (670)
+|+++|++|||||||+|+|.+........+.++....+..+..+ +...+.+||++|.. ..+.+ ......+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999876532222222222222334444 33467889999952 11111 11233456799
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|+|++++ .+++.+..|.+.+...... ..++|+++|+||+|+.+.....+....+.......+++++||++| |+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE-LLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc-ccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 7899999998888765421 115899999999999775555555555655542345999999999 99
Q ss_pred HHHHHHHHHH
Q 005908 578 NNVFSRIIWA 587 (670)
Q Consensus 578 ~~l~~~l~~~ 587 (670)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 266
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=4.4e-19 Score=167.79 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeEeCCcccCCc-eeEEEEeCCCCcc----chhhhHH---HhccCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKRAD 84 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~ad 84 (670)
.|+|+|++|||||||+|+|.+..... ..+++.... ....+...+ ..+.+|||||+.+ ...+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP-NLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCC-cceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999766421 122211111 111222333 4899999999742 1122333 345699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 85 AVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 85 ~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
++++|+|++++ ++++.+. .|.+.+.... .++|+++|+||+|+.+.... .+....+..... ..+++++||++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEecCC
Confidence 99999999999 7888876 4888887653 36899999999998765432 222333333321 13699999999
Q ss_pred CCCchHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKA 174 (670)
Q Consensus 161 ~~gi~~l~~~i~~~ 174 (670)
+.|++++|+++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988764
No 267
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=1.8e-19 Score=163.91 Aligned_cols=147 Identities=21% Similarity=0.317 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hhHhhhhchHhhc--
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EGVKKILSNKEAL-- 495 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~~~~~~~~~~~~-- 495 (670)
++|+++|.||||||||+|+|+|.+......|.++.+.....+.+.+ ..+.++|++|. ...+.+ +..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERV--ARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence 5899999999999999999999986554445555455555555543 56667888873 122334 34444
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
...|+++.|+|+++. +.......++.+. ++|+++|+||+|+..++......+.+.+.++++ ++++||+++
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~~~ 146 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSARTG 146 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTT
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeCCC
Confidence 689999999999874 3344555666655 799999999999988776666788999999987 999999999
Q ss_pred -ChHHHHHHH
Q 005908 576 -DLNNVFSRI 584 (670)
Q Consensus 576 -~v~~l~~~l 584 (670)
|+++++++|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 999999875
No 268
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=7.7e-19 Score=181.48 Aligned_cols=189 Identities=19% Similarity=0.178 Sum_probs=137.5
Q ss_pred HhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChh----hHh--
Q 005908 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVK-- 486 (670)
Q Consensus 415 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~-- 486 (670)
++++..+..+|++|+|+||||||||+|+|++.+..++++ +||++ +-...+++.| ..+.++||+|-. ..+
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G--~pv~l~DTAGiRet~d~VE~i 285 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNG--IPVRLVDTAGIRETDDVVERI 285 (454)
T ss_pred hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECC--EEEEEEecCCcccCccHHHHH
Confidence 455667889999999999999999999999999999988 46655 4445566764 556679999942 222
Q ss_pred hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCC
Q 005908 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEP 566 (670)
Q Consensus 487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 566 (670)
.+.++...+.+||.+++|+|++.+.+-.+ ...+..+ . . ++|+++|.||+||..+.... .+ +..+-.+
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d-~~~~~~~----~-~--~~~~i~v~NK~DL~~~~~~~----~~-~~~~~~~ 352 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKED-LALIELL----P-K--KKPIIVVLNKADLVSKIELE----SE-KLANGDA 352 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhh-HHHHHhc----c-c--CCCEEEEEechhcccccccc----hh-hccCCCc
Confidence 25668889999999999999998633222 2222211 1 1 69999999999999843321 11 1112225
Q ss_pred cEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcch
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSGV 621 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (670)
++.+||++| |++.|.++|.+.+... .........++.||.++++++..++..+
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~a~~~l~~a 406 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQAAEHLEDA 406 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc--ccccccceeecHHHHHHHHHHHHHHHHH
Confidence 899999999 9999999999988764 2233344667789999999988887643
No 269
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=3.2e-19 Score=167.52 Aligned_cols=154 Identities=19% Similarity=0.113 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
+.|+++|++|||||||+++|++.. +... .+++. ........+. .+..+.+|||||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999743 2222 11111 1111111111 2678999999999888777778889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCC
Q 005908 88 LTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQ 163 (670)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~g 163 (670)
+|+|+++ .++.+. +..++.. ..+|+++|+||+|+..........+.........+ ...+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~-----~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREH-----LEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHH-----HHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 333332 2223333 13499999999999754211001122222222210 124799999999999
Q ss_pred chHHHHHHHH
Q 005908 164 VPDVFYYAQK 173 (670)
Q Consensus 164 i~~l~~~i~~ 173 (670)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 270
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=4.6e-19 Score=178.28 Aligned_cols=142 Identities=25% Similarity=0.289 Sum_probs=111.6
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCccc-------------CCceeEEEEeCCCCc
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------PDRVPVTIIDTSSSL 70 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~i~Dt~G~~ 70 (670)
.......+||+|+|+.|||||||+++|+++.|.....++.+... ..+.+. ...+.+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44566789999999999999999999999988776544443322 222222 235789999999999
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-------------CCCCEEEEEeCCCCCCCCC--cc-
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT- 134 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~Dl~~~~~--~~- 134 (670)
.+..++..+++++|++|+|||++++.+++++. .|++.+.... .++|++|||||+|+...+. ..
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 99999999999999999999999999999998 5999997642 2589999999999976532 10
Q ss_pred -chhhhhhHHHHHhc
Q 005908 135 -SLEEVMGPIMQQFR 148 (670)
Q Consensus 135 -~~~~~~~~~~~~~~ 148 (670)
...+..+.++++.+
T Consensus 174 ~~~~e~a~~~A~~~g 188 (334)
T PLN00023 174 GNLVDAARQWVEKQG 188 (334)
T ss_pred cccHHHHHHHHHHcC
Confidence 13456677887776
No 271
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=1.5e-18 Score=169.46 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=111.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH------hhhhchHh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE 493 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~------~~~~~~~~ 493 (670)
.++.++|+|+|++|||||||+|++++..+.....+.++.......+.++ +...+.+||++|.... +.......
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 4566899999999999999999999987543332222222333445555 3346788999996211 11111233
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
.+..+|++++|+|++++.++.....|...+...... ++|+++|+||+|+.+..... ......+ .+++++||+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~---~~~viiV~NK~Dl~~~~~~~----~~~~~~~-~~~~~~Sa~ 188 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE---DIPMILVLNKIDLLDDEELE----ERLEAGR-PDAVFISAK 188 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC---CCCEEEEEEccccCChHHHH----HHhhcCC-CceEEEEcC
Confidence 467899999999999998888777776666554322 58999999999997643211 2333333 359999999
Q ss_pred cC-ChHHHHHHHHHH
Q 005908 574 SK-DLNNVFSRIIWA 587 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~ 587 (670)
+| |+++++++|.+.
T Consensus 189 ~~~gi~~l~~~L~~~ 203 (204)
T cd01878 189 TGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCHHHHHHHHHhh
Confidence 99 999999998764
No 272
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=1e-18 Score=162.72 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=116.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEE
Q 005908 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (670)
Q Consensus 426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~ 505 (670)
|+++|++|||||||+|+|.+.++...+.+|++..+. .++.+ ...+.+||++|+..+..+ +..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~--~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSM--WERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHH--HHHHHhcCCEEEEEE
Confidence 899999999999999999999988777777765543 23333 367889999999888877 778899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-Hh--CCCCcEEeecccC-ChHHHH
Q 005908 506 DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-EL--GIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 506 D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~--~~~~~~~vSA~~g-~v~~l~ 581 (670)
|+++..++.....++..+....... ++|+++|+||+|+.+.....+....+.. .. ...+++++||++| |+++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLE--GIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 9999888888877777765432222 6899999999998764322211111110 00 1125799999999 999999
Q ss_pred HHHHH
Q 005908 582 SRIIW 586 (670)
Q Consensus 582 ~~l~~ 586 (670)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99875
No 273
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=2e-18 Score=180.43 Aligned_cols=157 Identities=23% Similarity=0.256 Sum_probs=112.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA 494 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~ 494 (670)
...++|+++|.||||||||+|+|++........+.++.+.....+.++++ ..+.+|||+|..+ .+.+..+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999998754333332333445566777633 4778899999611 1223334567
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
+.+||++++|+|++++.+++....|...+...... ++|+++|+||+|+.+.. ....+.. +..+++++||++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~---~~piIlV~NK~Dl~~~~----~v~~~~~--~~~~~i~iSAkt 336 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAE---DIPQLLVYNKIDLLDEP----RIERLEE--GYPEAVFVSAKT 336 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC---CCCEEEEEEeecCCChH----hHHHHHh--CCCCEEEEEccC
Confidence 88999999999999998877776665555544321 58999999999997532 1222211 223589999999
Q ss_pred C-ChHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWA 587 (670)
Q Consensus 575 g-~v~~l~~~l~~~ 587 (670)
| |++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 9 999999998764
No 274
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.80 E-value=2e-18 Score=185.54 Aligned_cols=186 Identities=16% Similarity=0.149 Sum_probs=132.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK 492 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~ 492 (670)
.+..++|+++|+||||||||+|+|++..+..++. ++++.+.....+.++| ..+.+|||+|...... +.+..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3566899999999999999999999987654433 3333445455566664 4467899999743322 22346
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
.+++.+|++++|+|++++.+++.. |+..+... ++|+++|+||+|+... ....+++.++.+ ++++||
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~vSa 343 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSNLSA 343 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCc-eEEEEE
Confidence 788999999999999998887654 66555432 6899999999999753 224455666655 899999
Q ss_pred ccCChHHHHHHHHHHHhCCCCC-CC-CCcccccHHHHHHHhhhhhhhhcch
Q 005908 573 KSKDLNNVFSRIIWAAEHPHLN-IP-ETETGRNRKRYRHLVNSSLVFVSGV 621 (670)
Q Consensus 573 ~~g~v~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (670)
+++|++++|+.+.+.+...-.. .. .........||.++++++..++...
T Consensus 344 k~~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~ 394 (442)
T TIGR00450 344 KQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQF 394 (442)
T ss_pred ecCCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHH
Confidence 9889999999998877543211 11 1223445678889999888887643
No 275
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=6.8e-19 Score=166.08 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccC---CceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
.|+|+|++|||||||+++|.+.++.....+..........+.. .+..+.+|||||+..+...+..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 5999999999999999999988866542211111111111222 4678999999999888888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH----HhccCCeEEEeCcccCCCchH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|+++....+... .+..++.. ++|+++|+||+|+...... ........+.. ..+...+++++||++|.|+++
T Consensus 82 d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 998754322221 33344444 7899999999998753211 11122222211 122224799999999999999
Q ss_pred HHHHHHHHH
Q 005908 167 VFYYAQKAV 175 (670)
Q Consensus 167 l~~~i~~~~ 175 (670)
+++++.+..
T Consensus 157 l~~~l~~~~ 165 (168)
T cd01887 157 LLEAILLLA 165 (168)
T ss_pred HHHHHHHhh
Confidence 999988754
No 276
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.3e-18 Score=179.70 Aligned_cols=204 Identities=21% Similarity=0.233 Sum_probs=147.0
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH------
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN------ 77 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------ 77 (670)
....+..+||+|+|+||||||||+|.|++.. ++.+.|+++.. .+...+..+++.+.++||+|..+.....+
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNGIPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECCEEEEEEecCCcccCccHHHHHHHHH
Confidence 4456788999999999999999999999988 66667774332 26777888999999999999986655444
Q ss_pred --HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908 78 --EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 78 --~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
..+++||.+++|+|.+.+.+-.+.. .+. ....++|+++|.||+|+...... . .. +...-.+++.
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~ 355 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIIS 355 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEE
Confidence 6789999999999998863333322 222 23347999999999999875332 1 11 1111125899
Q ss_pred eCcccCCCchHHHHHHHHHHcCC-CC--CCC--ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhh
Q 005908 156 CSATTMIQVPDVFYYAQKAVLHP-TA--PLF--DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK 224 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~~-~~--~~~--~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~ 224 (670)
+||++|+|++.+.+.+.+.+... .. ..+ ..+.......+..++++.....+......+..++++..+..
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~ 429 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEA 429 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHH
Confidence 99999999999999999887655 11 112 23333466777788877777666544667777777766554
No 277
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=5.3e-19 Score=161.97 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-----cchhhhHHHhccCCEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL 88 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~ii~ 88 (670)
||+++|++|||||||+|+|++..+.. .++ ....+. -.+|||||+. .+.... ..++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~t-----~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KKT-----QAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--ccc-----eeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 89999999999999999999887532 211 111121 1689999973 222222 35889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|||++++.++... .|...+ ..|+++|+||+|+.+. .. ..+....+.+..+. .+++++||++|.|++++|
T Consensus 69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-DV--DIERAKELLETAGA-EPIFEISSVDEQGLEALV 137 (142)
T ss_pred EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-cc--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence 9999999987652 254432 3499999999998652 22 22334555555542 369999999999999999
Q ss_pred HHHH
Q 005908 169 YYAQ 172 (670)
Q Consensus 169 ~~i~ 172 (670)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8764
No 278
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=3.1e-18 Score=162.48 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=116.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...++|+|+|++|||||||++++.+..+.. ..+|.+ +....++..| ..+.+||++|+..+... +..+++.+|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~--~~~~~~~~~~ 84 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPY--WRNYFENTDC 84 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHH--HHHHhcCCCE
Confidence 346999999999999999999999986643 234544 3334455553 56778999999877766 6778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+++|+|+++..++.....++..+....... ++|+++++||+|+.... ..+++.+.+++. +++++||+
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 999999999888888777777665543322 69999999999987632 233444444442 36899999
Q ss_pred cC-ChHHHHHHHHH
Q 005908 574 SK-DLNNVFSRIIW 586 (670)
Q Consensus 574 ~g-~v~~l~~~l~~ 586 (670)
+| |++++|++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99 99999999875
No 279
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1.9e-18 Score=178.94 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCccc-CCceeEEEEeCCCCccch----h---hhHHHhccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----G---KLNEELKRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~a 83 (670)
..|+|||.||||||||+|+|++.+.. .++|.++..... ..+. .+..++.+|||||+.+.. . .+-.+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~-G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL-GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE-EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 46999999999999999999986532 223332111111 1222 245679999999975321 1 223456789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCC---CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+++|+|+|+++.++++++. .|..++..+.+ ++|+++|+||+|+.+.... ..+....+....+ .++++|||++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSAkt 312 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISAVT 312 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEcCC
Confidence 9999999999888888887 48888877643 7899999999999764432 2222333333333 3699999999
Q ss_pred CCCchHHHHHHHHHHcC
Q 005908 161 MIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~ 177 (670)
+.||+++++.+.+.+..
T Consensus 313 g~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 313 GEGLDELLRALWELLEE 329 (335)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887643
No 280
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.79 E-value=1.9e-18 Score=170.74 Aligned_cols=166 Identities=25% Similarity=0.393 Sum_probs=128.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCccc--CCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+++|++|||||||+++|.++.+...++++........... ...+++.+|||+|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 349999999999999999999999999887655433333222222 227889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCc-----------cchhhhhhHHHHHh--ccCCeEE
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNA-----------TSLEEVMGPIMQQF--REIETCV 154 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~ 154 (670)
|+|.++..++.++...|...++...+ +.|+++|+||+|+...... ..... ........ ... .++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 161 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLV-LAPKAVLPEVANP-ALL 161 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhh-hHhHHhhhhhccc-cee
Confidence 99999988888887789999988763 7999999999999886421 01111 11111111 122 389
Q ss_pred EeCcc--cCCCchHHHHHHHHHHcCC
Q 005908 155 ECSAT--TMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 155 ~~SA~--~~~gi~~l~~~i~~~~~~~ 178 (670)
++||+ .+.+|.++|..+.+.+...
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHHHHh
Confidence 99999 9999999999999887644
No 281
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=1.5e-18 Score=187.70 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=132.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHH
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE 78 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 78 (670)
.+..++|+++|.+|||||||+|+|++... +.+.+++.... ....+..++..+.+|||||+.++... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV-IEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc-EEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999998763 44455433222 22334446788999999998765432 224
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+++.+|++++|+|++++.++++.. .|.. ..++|+++|+||+|+...... . ...+ .+++++||
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~~--~~~i~iSA 352 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEIDL-E---------EENG--KPVIRISA 352 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccchh-h---------hccC--CceEEEEe
Confidence 688999999999999988877543 2332 347899999999999754322 1 1111 36899999
Q ss_pred ccCCCchHHHHHHHHHHcCCC-----CCCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908 159 TTMIQVPDVFYYAQKAVLHPT-----APLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV 223 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~ 223 (670)
++|.|++++++.+.+.+.... .... ..+......++.++|.+..........-.+..++++....
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~ 423 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALE 423 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999999998875311 1111 1222335556666676655554433444555666655544
No 282
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=4.3e-18 Score=160.71 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h-hchHhh-cc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEA-LA 496 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~-~~ 496 (670)
.+|+++|.+|||||||+|+|.+..+.....+.++.......+... ...+.+||++|...... + ...... ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987653322222222333334332 35788899999732100 0 001111 12
Q ss_pred cccEEEEEEECCCcccH--HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 497 SCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.+|++++|+|+++..++ +....|+..+..... +.|+++|+||+|+.......+ .+++.+..+. +++++||++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~ 152 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK----NKPVIVVLNKIDLLTFEDLSE-IEEEEELEGE-EVLKISTLT 152 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC----cCCeEEEEEccccCchhhHHH-HHHhhhhccC-ceEEEEecc
Confidence 36899999999987653 556677777765432 589999999999976433222 4444444333 599999999
Q ss_pred C-ChHHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWAA 588 (670)
Q Consensus 575 g-~v~~l~~~l~~~~ 588 (670)
| |++++++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 9 9999999998865
No 283
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.78 E-value=4.6e-18 Score=159.63 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~---~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+.|+++|++|||||||+|+|.+..... ...++++.......+..++ ...+.+||++|++.+... ...++..+|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~--~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKN--MLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHH--HHhhhhcCCE
Confidence 368999999999999999999753222 2223333333334455542 457888999999887654 5677889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHh--CCCCcEEeecccC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL--GIEPPIPVSMKSK 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~~~~~vSA~~g 575 (670)
+++|+|++++.. ......+..+... . ..|+++|+||+|+.+.... ..+..+..+.. ...+++++||++|
T Consensus 78 ii~V~d~~~~~~-~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 78 VLLVVAADEGIM-PQTREHLEILELL-G----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred EEEEEECCCCcc-HhHHHHHHHHHHh-C----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 999999987422 1122222222222 1 2499999999999764211 23333333332 2236999999999
Q ss_pred -ChHHHHHHHHH
Q 005908 576 -DLNNVFSRIIW 586 (670)
Q Consensus 576 -~v~~l~~~l~~ 586 (670)
|++++++.+.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 99999998864
No 284
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=5e-19 Score=161.02 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHh--ccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--KRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~a 83 (670)
++|+++|.||||||||+|+|++.+. ..++|+++.. .....+...+..+.++|+||...... ....++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 5899999999999999999999983 3447775433 34445565678999999999654322 222333 689
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
|+++.|+|+++.+. + . ++..++.+. ++|+++|.||+|+...... .. ..+.+.+.++ .+++++||+++.|
T Consensus 80 D~ii~VvDa~~l~r--~-l-~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~i--d~~~Ls~~Lg--~pvi~~sa~~~~g 148 (156)
T PF02421_consen 80 DLIIVVVDATNLER--N-L-YLTLQLLEL--GIPVVVVLNKMDEAERKGI-EI--DAEKLSERLG--VPVIPVSARTGEG 148 (156)
T ss_dssp SEEEEEEEGGGHHH--H-H-HHHHHHHHT--TSSEEEEEETHHHHHHTTE-EE---HHHHHHHHT--S-EEEEBTTTTBT
T ss_pred CEEEEECCCCCHHH--H-H-HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-EE--CHHHHHHHhC--CCEEEEEeCCCcC
Confidence 99999999887432 2 2 366666666 8999999999998776554 22 2466777777 3899999999999
Q ss_pred chHHHHHH
Q 005908 164 VPDVFYYA 171 (670)
Q Consensus 164 i~~l~~~i 171 (670)
++++++.|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999865
No 285
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=9.5e-18 Score=175.19 Aligned_cols=181 Identities=17% Similarity=0.213 Sum_probs=121.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhh-Hhhh-----hchH
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKI-----LSNK 492 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~-----~~~~ 492 (670)
.+.++|+++|++|||||||+|+|+++.+..+++ .||. ......+..++ ..+.+|||+|... +..+ ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 455899999999999999999999998876544 2333 33334455553 4578899999732 2221 1123
Q ss_pred hhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC-CCCcEEe
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPV 570 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v 570 (670)
.++..+|++++|+|+++. +.... .|+..+... +.|.++|+||+|+.+. ......+++.... ..+++++
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence 457899999999998764 44443 444555433 4678899999999753 2334444544443 3468999
Q ss_pred ecccC-ChHHHHHHHHHHHh-CCCCCCCCCcccccHH-HHHHHhhhh
Q 005908 571 SMKSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSS 614 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (670)
||++| |++++++++.+.+. .+...+++..+..+.+ ...+++++.
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~ 243 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQ 243 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999 99999999999774 4444445555554444 345555543
No 286
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=4.3e-18 Score=158.25 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=115.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCc--eeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR--VPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+||+++|.+|+|||||++++.+..+.....++.+.......+..++ +.+.+|||||+.++...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999885544332222222222222333 8899999999999888888899999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|+... .++......|...+..... +.|+++|+||+|+.... ............+. .+++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~-~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNG-EPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccC-CceEEeecCCCCCHHHH
Confidence 999887 7776665456666665444 88999999999997643 12333344444443 36999999999999999
Q ss_pred HHHH
Q 005908 168 FYYA 171 (670)
Q Consensus 168 ~~~i 171 (670)
++.+
T Consensus 156 ~~~l 159 (161)
T TIGR00231 156 FKIV 159 (161)
T ss_pred HHHh
Confidence 9875
No 287
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=4.2e-18 Score=183.06 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=132.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hH
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LN 77 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~ 77 (670)
..++.+||+++|+||||||||+|+|++.. ++...|++... .....+..++..+.+|||||+.++... ..
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd-~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD-VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE-EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 34567999999999999999999999875 44555554322 233344556788999999998655432 23
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
.+++.+|++++|||++++.+++.. |+..+... ++|+++|+||+|+... . ...+.+.++ .+++++|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~-~-------~~~~~~~~~--~~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN-S-------LEFFVSSKV--LNSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc-c-------hhhhhhhcC--CceEEEE
Confidence 678999999999999998887753 66655543 7899999999998643 1 123334443 2589999
Q ss_pred cccCCCchHHHHHHHHHHcCCCC--------CCCc-cccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908 158 ATTMIQVPDVFYYAQKAVLHPTA--------PLFD-HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV 223 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~~~~--------~~~~-~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~ 223 (670)
|++ .||+++|+.+.+.+..... .... .+......++..+|.+............+..++++....
T Consensus 343 ak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~ 416 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAIN 416 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 998 6999999888887643211 1111 112234455666666555544433344555566655544
No 288
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=8.3e-18 Score=174.19 Aligned_cols=165 Identities=18% Similarity=0.097 Sum_probs=118.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhh-hchHhhccc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALAS 497 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~ 497 (670)
...|+|||.||||||||+|+|.+........+.++.....-.+..+ ....+.+||++|..+ ...+ .+....+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3579999999999999999999876443333433333444455554 345678899998521 1111 114556788
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
++++++|+|+++.++++....|..++..+... ..++|+++|+||+|+.+.... ....+.+.+..+. +++++||+++
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~-L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~~iSAktg~ 314 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE-LADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVFLISAVTGE 314 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh-cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEEEEEcCCCC
Confidence 99999999999888899999999999876432 115899999999999764432 2334444455554 4999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005908 576 DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~ 590 (670)
|+++++++|.+.+..
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 289
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=7.7e-18 Score=182.26 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=127.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK 492 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~ 492 (670)
.+..++|+++|.+|||||||+|+|++.++..+++ +.++.++....+.++| ..+.+|||+|...+.. +.++.
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 3456899999999999999999999987654433 3333334445556653 4577899999743322 22345
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
.+++.+|++++|+|++++.+++....|.. . . +.|+++|+||+|+.+..... .....+++++||
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~--~--~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA 352 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----L--K--DKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA 352 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh-----c--C--CCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence 67899999999999999988765444332 1 1 68999999999997632211 222235899999
Q ss_pred ccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcc
Q 005908 573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSG 620 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (670)
++| |++++++++.+.+...... ..........||.++++++..++..
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~-~~~~~~~~~~R~~~~l~~a~~~l~~ 400 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGG-NQEGVFLTNARHLEALERALEHLER 400 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhcccc-ccccceehHHHHHHHHHHHHHHHHH
Confidence 999 9999999999988642111 1222344567888888888877753
No 290
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=168.86 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=102.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCC-----------ccchhh
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSS-----------LENKGK 75 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~ 75 (670)
...+.++|+++|++|||||||+|+|++..+... .++ .+.....+... .+.+|||||. +.+...
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~---~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG---VTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc---eeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 345678999999999999999999998876543 333 22212222222 5899999994 344444
Q ss_pred hHHHhc----cCCEEEEEEECCChhhHHH---------HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH
Q 005908 76 LNEELK----RADAVVLTYACNQQSTLSR---------LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142 (670)
Q Consensus 76 ~~~~~~----~ad~ii~v~d~~~~~s~~~---------~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~ 142 (670)
+..+++ .++++++|+|.++...+.. ....+...+... ++|+++|+||+|+.+.. .+....
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~ 152 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDE 152 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHH
Confidence 444443 4578888888765322200 111234444443 79999999999986532 223445
Q ss_pred HHHHhccC-------CeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 143 IMQQFREI-------ETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 143 ~~~~~~~~-------~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+.+.++.. .+++++||++| ||+++++++.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 55555421 14899999999 999999999987643
No 291
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.77 E-value=8.2e-18 Score=147.54 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=123.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..++++|.|+|..|+||||++++|.+.......|+ .+.... ....+++++++||.+|+......|..|+..+|++|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt-~gf~Ik--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPT-LGFQIK--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCc-cceeeE--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 34589999999999999999999988773332333 222111 344678999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccch--hhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|.+++..+++....+...+.. .-.+.|+++++||.|+...-..... .-.++.+++... .+.+.|||.+|+++.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLL 167 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHH
Confidence 99999999888887766666643 2247999999999999854222111 122344443332 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
+-++++...+.
T Consensus 168 ~gidWL~~~l~ 178 (185)
T KOG0073|consen 168 EGIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 292
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=3.3e-18 Score=166.94 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=106.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCC-CCCCCeEeCCcccCCceeEEEEeCCCCccch--hh------hHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~ 79 (670)
.+.++|+|+|++|||||||+|++++..+.. +.+ ++.........+ .+...+.+|||||+.... .. ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999987432 222 111112112222 223489999999973211 11 1123
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+..+|++++|+|++++.++.... .|.+.++... .++|+++|+||+|+...... . ...... ..+++++||
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~----~---~~~~~~--~~~~~~~Sa 187 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL----E---ERLEAG--RPDAVFISA 187 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH----H---HHhhcC--CCceEEEEc
Confidence 67899999999999998887765 3777776643 36899999999999754322 1 222222 237999999
Q ss_pred ccCCCchHHHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQKA 174 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (670)
++|.|++++++++.+.
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988764
No 293
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.77 E-value=6.2e-19 Score=151.12 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=127.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+.++.+.++|-.++|||||+|.+..+.+.++ .|++....+ .+..+.+.+.+||.||+..|..+|+.|+++++++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4578899999999999999999999888777 666554444 566788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|+|+.+++..+...+++...+.+. -.++|+++.|||.|+...-....+.+.+.-..-.-.+ ..+|.+||++..||+.+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE-vcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE-VCCFSISCKEKVNIDIT 173 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce-EEEEEEEEcCCccHHHH
Confidence 999999999888888888888653 3589999999999998753220111111100011112 25899999999999999
Q ss_pred HHHHHHHH
Q 005908 168 FYYAQKAV 175 (670)
Q Consensus 168 ~~~i~~~~ 175 (670)
.+++++..
T Consensus 174 ~~Wli~hs 181 (186)
T KOG0075|consen 174 LDWLIEHS 181 (186)
T ss_pred HHHHHHHh
Confidence 99998764
No 294
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=5e-18 Score=163.38 Aligned_cols=159 Identities=19% Similarity=0.124 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC--------------CeE--eCCcccCCceeEEEEeCCCCccchhhhH
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--------------PTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (670)
+|+|+|.+|+|||||+|+|++............ .+. ....+...+..+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998876544322110 000 1112234467899999999988888888
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc---------
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------- 148 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------- 148 (670)
.+++.+|++++|+|+++..+.... .++..+... ++|+++|+||+|+..........+.+....+..+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 999999999999999877655433 255555553 8999999999999863222012222333333322
Q ss_pred ---cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 149 ---EIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 149 ---~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
...+++++||++|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2357999999999999999999988764
No 295
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.77 E-value=3.6e-18 Score=178.48 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=106.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCC-CCCCCeEeCCcccCCceeEEEEeCCCCcc--chhh------hHHHh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE--NKGK------LNEEL 80 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~------~~~~~ 80 (670)
..++|+++|.+|||||||+|+|++..+ ..+.+ ++.+.......+ .++..+.+|||+|+.+ .... ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 348999999999999999999999874 23333 223333322233 2456899999999732 1111 12357
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
.+||++|+|+|++++.+.+.... |...++... .++|+++|+||+|+...... ...... ..+++++||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence 89999999999999988877653 666666543 37899999999998643211 111111 1258999999
Q ss_pred cCCCchHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKA 174 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (670)
+|.|++++++.+.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988654
No 296
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=173.77 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChh-----hHhh--hhchHhh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKK--ILSNKEA 494 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-----~~~~--~~~~~~~ 494 (670)
+.|+|+|+||||||||+|||++...+.+++ ++|+++.+ ....+.| ..+.++||.|-+ .+.. ..++..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y-~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIY-GDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcc-ceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 579999999999999999999999988877 46665544 3333432 236667777733 2222 2236778
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
+..||++|||+|+..+.+ .......+.+... ++|+++|+||+|-.+ .+....-...+|+..++.+||.+
T Consensus 81 i~eADvilfvVD~~~Git-~~D~~ia~~Lr~~------~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 81 IEEADVILFVVDGREGIT-PADEEIAKILRRS------KKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HHhCCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhh
Confidence 899999999999998766 3344444444432 699999999999764 22222334567888899999999
Q ss_pred C-ChHHHHHHHHHHHh
Q 005908 575 K-DLNNVFSRIIWAAE 589 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~ 589 (670)
| |+.+|++++.+.+.
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9 99999999999984
No 297
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=1.8e-17 Score=177.13 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhhc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEAL 495 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~~ 495 (670)
..++|+|+|.||||||||+|+|++.++.....+.++.+.....+.+++ ...+.+|||+|..+ .+.+.++...+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999876643333333334445566663 33567899999622 12233356678
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
+.||++|+|+|++++.++..+..|...+...... ++|+++|+||+|+.+.... ... ....+.+.++++||++|
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG 347 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH---EIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTG 347 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC---CCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCC
Confidence 9999999999999998777765544444433221 5899999999999753211 111 11234443589999999
Q ss_pred -ChHHHHHHHHHHHhC
Q 005908 576 -DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~ 590 (670)
|++++++.|.+.+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 999999999998743
No 298
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=9e-18 Score=156.65 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHhc--cCCEEE
Q 005908 17 VVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADAVV 87 (670)
Q Consensus 17 ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~ii 87 (670)
|+|++|||||||+|++++..+... .+++.... ....+...+..+.+|||||+..+.. +...++. .+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEK-KEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCccccc-ceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 589999999999999998863332 33322211 1122333457899999999876553 2455564 999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|+|+++..... .|...+... ++|+++|+||+|+.+.... ......+...++ .+++++||++|.|++++
T Consensus 80 ~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 80 NVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI---KIDLDKLSELLG--VPVVPTSARKGEGIDEL 148 (158)
T ss_pred EEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc---hhhHHHHHHhhC--CCeEEEEccCCCCHHHH
Confidence 999998765432 255555554 7999999999999765433 122345555555 37999999999999999
Q ss_pred HHHHHHH
Q 005908 168 FYYAQKA 174 (670)
Q Consensus 168 ~~~i~~~ 174 (670)
++.+.+.
T Consensus 149 ~~~l~~~ 155 (158)
T cd01879 149 KDAIAEL 155 (158)
T ss_pred HHHHHHH
Confidence 9988775
No 299
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.1e-17 Score=161.77 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCCCCCCC---C---------CCCCeE--eCCcccCCceeEEEEeCCCCccchhhh
Q 005908 13 VRVVVVGDRGTGKSSLIAAAAT--ESVPEKVP---P---------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKL 76 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~--~~~~~~~~---~---------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 76 (670)
-+|+++|++|||||||+++|++ +.|..... . ..+.+. ....+..+++.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 44543321 0 011111 222344567899999999999999999
Q ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----CC
Q 005908 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE 151 (670)
Q Consensus 77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~ 151 (670)
..+++.+|++++|||+++.. +.... .++..+... ++|+++|+||+|+...+.. ...+.+..+...++. -.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998743 22222 244444444 7899999999999754322 122233333322210 13
Q ss_pred eEEEeCcccCCCchHH
Q 005908 152 TCVECSATTMIQVPDV 167 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l 167 (670)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 7999999999888543
No 300
>PTZ00099 rab6; Provisional
Probab=99.76 E-value=2.3e-17 Score=156.09 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=119.6
Q ss_pred CCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHH
Q 005908 446 RPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525 (670)
Q Consensus 446 ~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~ 525 (670)
+.|...+.+|++.++..+.+.++|+...+.+||++|++.+..+ +..++++||++|+|||++++.||+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3566677789988888788888877888999999999999988 78899999999999999999999999999998876
Q ss_pred hcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 526 LGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 526 ~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
.... +.|+++|+||+|+... ....+++..+++.++.. ++++||++| ||+++|++|++.+....
T Consensus 81 ~~~~---~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 81 ERGK---DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred hcCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 5432 6899999999999753 33466777888888775 899999999 99999999999886543
No 301
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=1.9e-17 Score=171.52 Aligned_cols=163 Identities=16% Similarity=0.086 Sum_probs=118.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----hh-hchHhhccc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALAS 497 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~ 497 (670)
...|+|||.||||||||+|+|.+........+.++.......+.++ ....+.+||++|..+.. .+ ....+.+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 4689999999999999999999876443333333333444455555 44677889999863211 11 113455678
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 498 ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
+|++++|+|+++. .+++.+..|..++..+... ..++|+++|+||+|+.......+..+++++.++.. ++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~-l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE-LAEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh-hccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEEccC
Confidence 9999999999976 6778888888888766421 11689999999999987544445556666666654 99999999
Q ss_pred C-ChHHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWAA 588 (670)
Q Consensus 575 g-~v~~l~~~l~~~~ 588 (670)
+ |++++++.|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 9 9999999998764
No 302
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=159.75 Aligned_cols=224 Identities=14% Similarity=0.197 Sum_probs=155.8
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh-------Hhhhhch
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSN 491 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~ 491 (670)
....+++|.++|.+|+|||||||+|++++...+..-..+.+........- ....+.+||++|-++ ++.. .
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~--~ 111 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQL--Y 111 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHH--H
Confidence 35677999999999999999999999877776654222222222222222 225677899998433 4444 6
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------cc--------HHHH
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MA--------VQDS 555 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~--------~~~~ 555 (670)
..++.+.|++++++|+.++.- .-..+++..+..... +.++++++|.+|...+. .. .+.+
T Consensus 112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 788999999999999999742 334455555554433 48999999999986531 11 1122
Q ss_pred HHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC----------CCcccccHHHHHHH-hhhhhhhhcchh
Q 005908 556 ARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP----------ETETGRNRKRYRHL-VNSSLVFVSGVP 622 (670)
Q Consensus 556 ~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 622 (670)
+.+.+... ..|++.+|+..+ |++++..++++.+......+- .....+.+.++.+. +.+.+..++.++
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~~~~~~~q~~~~~~~s~v~~~~~ti~~~s 266 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELRTQSARTQARTQFLESPVDRIFDTIQTVS 266 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhhHHHHHHHHHHHHHHhhcchHHHHHHHHhhch
Confidence 22222221 347999999999 999999999999875444321 11123333344444 566777788777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 005908 623 VLLLLYFLHMHTWTCIVLITILHIYSWG 650 (670)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (670)
.++.++..++...+.+|+.+++++|+|+
T Consensus 267 ~i~~~~~tI~~~~~~~V~~va~av~~~f 294 (296)
T COG3596 267 LIYSVARTIIRAVRPTVVSVARAVWDLF 294 (296)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8999999999999999999999999986
No 303
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=1.8e-17 Score=154.65 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=108.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhh----chHhhc--ccccEE
Q 005908 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL--ASCDVT 501 (670)
Q Consensus 428 ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~--~~ad~v 501 (670)
|+|.+|||||||+|++.+........++++.......+.++| ..+.+||++|...+.... ....++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999864443334444444445566664 467889999986554310 023444 499999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
++|+|+++..+ ...+...+... ++|+++|+||+|+.+........+.+++.++.+ ++++||++| |+.++
T Consensus 79 i~v~d~~~~~~---~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~~l 148 (158)
T cd01879 79 VNVVDATNLER---NLYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEGIDEL 148 (158)
T ss_pred EEEeeCCcchh---HHHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence 99999988644 23444444443 699999999999977544444556777777765 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
++.+.+.++
T Consensus 149 ~~~l~~~~~ 157 (158)
T cd01879 149 KDAIAELAE 157 (158)
T ss_pred HHHHHHHhc
Confidence 999988643
No 304
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=4e-17 Score=168.43 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALAS 497 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~~ 497 (670)
-.|+|+|+||||||||+|+|++.....++..+.++......+... +...+.++||+|...... .......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 569999999999999999999998876665322222223333333 336778899999532111 1114557789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|++++|+|++++.+ .........+... +.|+++|+||+|+... .......+.+.+..+..+++++||++|
T Consensus 85 ~D~il~vvd~~~~~~-~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 85 VDLVLFVVDADEKIG-PGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred CCEEEEEEeCCCCCC-hhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 999999999998433 2223333333322 5899999999999843 334556666666667677999999999
Q ss_pred ChHHHHHHHHHHHhCCC-CCCCCCcccccHH-HHHHHhhh
Q 005908 576 DLNNVFSRIIWAAEHPH-LNIPETETGRNRK-RYRHLVNS 613 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 613 (670)
|++++++.+.+.+.... ..+++.......+ ...+.+++
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe 197 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIRE 197 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999875433 3333333333322 33444443
No 305
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=6.4e-18 Score=185.01 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=111.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh-hH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK-LN 77 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~ 77 (670)
..+||+|+|++|||||||+|+|++..+ ....+++.... ....+..++..+.+|||||+.+ +... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~-~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDP-VDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCc-ceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 468999999999999999999999874 33344433221 2223334566789999999632 1111 12
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEE
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVE 155 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 155 (670)
.+++.+|++++|+|++++.++.+.. ++..+... ++|+|+|+||+|+...... ......+...+. ...++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEEE
Confidence 4678999999999999998888764 66666554 7999999999999753211 111122222222 1247899
Q ss_pred eCcccCCCchHHHHHHHHHHcC
Q 005908 156 CSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+||++|.||+++|+.+.+.+..
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 306
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=2.7e-17 Score=169.68 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=116.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEEL 80 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 80 (670)
+.-.|+|+|+||||||||+|+|++.++... .+.+.. ..+......++..+.+|||||...... .....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999999999885432 222211 112222333557899999999765332 223567
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
..+|++++|+|+++..+.. ...+...++.. +.|+++|+||+|+..... ........+...++ ..+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~--~l~~~~~~l~~~~~-~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKE--ELLPLLEELSELMD-FAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHH--HHHHHHHHHHhhCC-CCeEEEecCCC
Confidence 8999999999998832222 22355555543 789999999999974322 13344455555444 34799999999
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCcccccccc
Q 005908 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLK 191 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~ 191 (670)
|.|++++++.+.+.+.. .++.|+.+.....
T Consensus 156 ~~gv~~L~~~L~~~l~~-~~~~y~~~~~td~ 185 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE-GPPYYPEDQITDR 185 (292)
T ss_pred CCCHHHHHHHHHHhCCC-CCCCCCCCCCCCC
Confidence 99999999999887654 3356665544433
No 307
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.8e-18 Score=153.26 Aligned_cols=166 Identities=12% Similarity=0.175 Sum_probs=131.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....++++|+++|-.|+||||++++|..+++....|++..... .+...++.+.+||.+|++.++..|..|+++.+++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3467889999999999999999999999988887776544433 3445589999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQV 164 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gi 164 (670)
|||+|.+|++.+.+..+.+...+.... .+.|+++.+||.|+...-......+.+ .+ ..+. ..-.+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L-~l-~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL-GL-HSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh-hh-hccCCCCcEEeeccccccccH
Confidence 999999999999999988888886543 589999999999998764431111111 01 1111 1125788999999999
Q ss_pred hHHHHHHHHHHcC
Q 005908 165 PDVFYYAQKAVLH 177 (670)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (670)
.|-++++...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 308
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=2.2e-17 Score=156.40 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-----------hhHH
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-----------KLNE 78 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 78 (670)
.++|+++|++|+|||||+|+|++..+. ...+++.... ....+..++..+.+|||||..+... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 579999999999999999999987632 2233222111 1223334556789999999754311 1124
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEEEe
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVEC 156 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 156 (670)
+++.+|++++|+|++++.+..... +...+... ++|+++|+||+|+...... ........+.+.++. ..+++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEEE
Confidence 568999999999999887766543 45555444 7899999999999765322 233333444444431 2479999
Q ss_pred CcccCCCchHHHHHHHHH
Q 005908 157 SATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~ 174 (670)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 309
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.75 E-value=1.8e-17 Score=157.10 Aligned_cols=158 Identities=24% Similarity=0.298 Sum_probs=121.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
++.+||+++|..|+|||||++++..+.... ..||.+ +.+..+... ...+.+||..|+..++.+ +..++.++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~--w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPL--WKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGG--GGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEecccccccccc--ceeeccccce
Confidence 677999999999999999999999875443 335554 444555554 467788999999888888 8899999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH--hC--CC-CcEEeecccC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE--LG--IE-PPIPVSMKSK 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~--~~-~~~~vSA~~g 575 (670)
+|+|+|+++...+.+....+..+....... +.|+++++||.|+.+.- ..+++.+.... +. .+ .++.+||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~--~~piLIl~NK~D~~~~~-~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELK--DIPILILANKQDLPDAM-SEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGT--TSEEEEEEESTTSTTSS-THHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcc--cceEEEEeccccccCcc-hhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 999999999988988888888877654333 69999999999987632 23333332211 11 11 4789999999
Q ss_pred -ChHHHHHHHHHHH
Q 005908 576 -DLNNVFSRIIWAA 588 (670)
Q Consensus 576 -~v~~l~~~l~~~~ 588 (670)
|+.+.+++|.+.+
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 9999999998864
No 310
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=3.9e-17 Score=154.06 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
.|+|+|.+|||||||+|+|.+.++...+.++++.......++.. +....+.+||++|++.+..+ +...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--RARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH--HHHHHhhcCEEEE
Confidence 59999999999999999999988776544443333333444443 13567788999999888776 6677899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHH----hC-CCCcEEeecccC-
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQE----LG-IEPPIPVSMKSK- 575 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~----~~-~~~~~~vSA~~g- 575 (670)
|+|++++...+ ....+..+... ++|+++|+||+|+...... ......+... .+ ..+++++||++|
T Consensus 80 v~d~~~~~~~~-~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 80 VVAADDGVMPQ-TIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred EEECCCCccHH-HHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99999864322 22223333332 6999999999998753211 1112222111 11 136999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988654
No 311
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=5.2e-17 Score=171.55 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----hh-hchHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~a 498 (670)
..|+|||.||||||||+|+|++........|.|+.....-.+..+ ....+.++|++|..+-. .+ .+....+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 479999999999999999999876533323433323333444444 34457789999853211 01 1134568899
Q ss_pred cEEEEEEECC---CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-CcEEeeccc
Q 005908 499 DVTIFVYDSS---DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMKS 574 (670)
Q Consensus 499 d~vllv~D~s---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSA~~ 574 (670)
|++++|+|++ +...++....|.+++..+...- .++|+++|+||+|+.......+..+++.+.++.. +++++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 4556777788888887653210 1589999999999976444445556666665543 689999999
Q ss_pred C-ChHHHHHHHHHHHhCCCC-CCCCCccccc-HHHHHHHhhhhhh
Q 005908 575 K-DLNNVFSRIIWAAEHPHL-NIPETETGRN-RKRYRHLVNSSLV 616 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 616 (670)
+ |++++++.|.+.+..... .+++...... +-...+++++.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 9 999999999998855333 3334333333 2355566655553
No 312
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=2.2e-17 Score=156.28 Aligned_cols=140 Identities=13% Similarity=0.141 Sum_probs=109.9
Q ss_pred CCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 005908 35 ESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL 112 (670)
Q Consensus 35 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~ 112 (670)
+.|.+.+.++.+... ....+....+.+.||||+|++.+...+..++++||++|+|||++++.+|+.+. .|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence 346666544444322 33455667899999999999999999999999999999999999999999997 488877553
Q ss_pred -CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 113 -EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 113 -~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
.++.|++||+||+|+...+.+ .. +....++..++. .+++|||++|.||+++|+++.+.+....
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v-~~-~e~~~~~~~~~~--~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKV-TY-EEGMQKAQEYNT--MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCCCeEEEEEECcccccccCC-CH-HHHHHHHHHcCC--EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 357899999999999765555 33 334556666653 6899999999999999999999886543
No 313
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=4.4e-17 Score=172.12 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccC-CceeEEEEeCCCCccch-------hhhHHHhccCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENK-------GKLNEELKRAD 84 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad 84 (670)
.|+|||.||||||||+|+|++.+. +..+|.++.... ...+.. +...+.++||||..+.. .....+++.+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~-~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPN-LGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcE-EEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998763 222443222211 122222 34569999999986421 12235688999
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 85 AVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 85 ~ii~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++++|+|++ +...++... .|.+.+..+. .++|+++|+||+|+..... ..+.+..+.+.++...+++++||
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---l~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---AEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---HHHHHHHHHHHhCCCCCEEEEEC
Confidence 999999988 445666655 4777777653 3689999999999865322 22334445444432225899999
Q ss_pred ccCCCchHHHHHHHHHHcCCCCCCCccccccccH
Q 005908 159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKP 192 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 192 (670)
+++.||+++++.+.+.+.. .++.|+.+.....+
T Consensus 316 ~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~td~~ 348 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEE-NPREEAEEAEAPEK 348 (390)
T ss_pred CCCcCHHHHHHHHHHHhhh-CcccCCcccccCcc
Confidence 9999999999999987754 34555555554433
No 314
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=2.1e-17 Score=171.09 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCccc-CCceeEEEEeCCCCccch----hhhH---HHhccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKLN---EELKRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~~---~~~~~a 83 (670)
..|+|||.||||||||+|+|++.+.. .++|.++....+. .+. .+...+.+|||||+.+.. .+.. ..++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 57999999999999999999987632 2233322111111 122 234789999999985322 2223 445679
Q ss_pred CEEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 84 d~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+++++|+|+++. ++++.+. .|.+++..+. .++|+++|+||+|+..... ..+..+.+.+.++ .+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~~~~l~~~~~--~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAELLKELKKALG--KPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHHHHHHHHHcC--CcEEEEE
Confidence 999999999976 6677776 4877776653 3799999999999975422 2334445555554 3699999
Q ss_pred cccCCCchHHHHHHHHHH
Q 005908 158 ATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~ 175 (670)
|+++.||+++++.+.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999988753
No 315
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.74 E-value=7.9e-17 Score=141.40 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=125.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+.+++|.|+|..|+||||++++|.+...... .||.+ +.++.+..+ ...+.+||..|+...++. +..|+..+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i-~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~--W~nYfestdg 86 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI-SPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSY--WKNYFESTDG 86 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc-CCccc--eeeEEEEec--ceEEEEEEcCCcchhHHH--HHHhhhccCe
Confidence 3479999999999999999999999873333 35544 666666665 367888999999999998 9999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-----HHHHHHHHHHhCCCCcEEeecccC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----VQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
+|||+|++|+..+++....+..+.....-. +.|+++++||.|+...-.. .-..+++++...++ ++.+||.+|
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tg 163 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTG 163 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEecccc
Confidence 999999999988888887777765432222 7899999999999842111 22344555555665 999999999
Q ss_pred -ChHHHHHHHHHHHhC
Q 005908 576 -DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~ 590 (670)
++.+-++++...+..
T Consensus 164 e~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 999999999987764
No 316
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.5e-17 Score=154.81 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=103.1
Q ss_pred EEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhccCCE
Q 005908 16 VVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRADA 85 (670)
Q Consensus 16 ~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~ 85 (670)
+++|.+|||||||+|+|++.. +....+++... .........+..+.+|||||+..+.. .....++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999876 33333332211 12223334567899999999887543 33467889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
+++|+|..+..+.... .+...++.. +.|+++|+||+|+...... ......++ ..+++++||++|.|++
T Consensus 80 ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~-~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 80 ILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLG-FGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcC-CCCeEEEecccCCCHH
Confidence 9999998876554443 255556655 6999999999999754221 12223333 2368999999999999
Q ss_pred HHHHHHHHH
Q 005908 166 DVFYYAQKA 174 (670)
Q Consensus 166 ~l~~~i~~~ 174 (670)
++++++.+.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999998864
No 317
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=6.7e-17 Score=150.16 Aligned_cols=156 Identities=24% Similarity=0.379 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|.+|+|||||+|++.+..+...+.++++.++....+..++....+.+||++|+..+..+ .....+.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI--RRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhhhEEEE
Confidence 79999999999999999999999866555567766666655666543467788999998888776 6667788999999
Q ss_pred EEECCCc-ccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 504 VYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 504 v~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
++|.... .++.... .+...+...... +.|+++|+||+|+.... ............+..+++++||++| |+.++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence 9999877 6666655 666666655432 58999999999998744 3333444444555556999999999 99999
Q ss_pred HHHHH
Q 005908 581 FSRII 585 (670)
Q Consensus 581 ~~~l~ 585 (670)
++.|-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 318
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=1.8e-17 Score=154.36 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch----hhhHHHhccCCEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----GKLNEELKRADAVVLT 89 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~ii~v 89 (670)
+|+++|++|||||||+|+|.+..... . . .....+... .+|||||+.... ......++++|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~-~-----~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-R-K-----TQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-c-c-----ceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 79999999999999999987653211 1 1 111122222 269999974222 2223457899999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
+|+++..++.. .|+..+ ..++|+++++||+|+.+.. .+....+.++.+...+++++||++|.||+++|+
T Consensus 72 ~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 72 HGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDAD-----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCccc-----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99998876533 233332 2378999999999986421 233455555665434899999999999999999
Q ss_pred HHHHHHc
Q 005908 170 YAQKAVL 176 (670)
Q Consensus 170 ~i~~~~~ 176 (670)
.+.+.+.
T Consensus 141 ~l~~~~~ 147 (158)
T PRK15467 141 YLASLTK 147 (158)
T ss_pred HHHHhch
Confidence 9887654
No 319
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=2.2e-17 Score=157.47 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=98.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhhhH
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLN 77 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 77 (670)
+....++|+|+|++|||||||+|+|++..+.....+..+.+.....+..+ -.+.+|||||... +.....
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 34678899999999999999999999986443322222222211111111 2699999999642 222333
Q ss_pred HHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908 78 EELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV 154 (670)
Q Consensus 78 ~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (670)
.+++. +|++++|+|++++.+..+.. +...+... ++|+++|+||+|+..........+.++......+...+++
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 45553 58999999998866655543 45666555 7999999999998753221011222333333332123699
Q ss_pred EeCcccCCCch
Q 005908 155 ECSATTMIQVP 165 (670)
Q Consensus 155 ~~SA~~~~gi~ 165 (670)
++||++|+||+
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999984
No 320
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=5e-17 Score=151.24 Aligned_cols=145 Identities=23% Similarity=0.236 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHHhcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR 82 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 82 (670)
++|+++|++|+|||||++++.+..+. ...+++.... ....+...+.++.+|||||..++... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999988743 2233332221 12234445778999999998655322 2356789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
+|++++|+|++++.+...... +.. ..++|+++|+||+|+.+.... .... ...+++++||+++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~~~--~~~~~~~~Sa~~~~ 143 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LSLL--AGKPIIAISAKTGE 143 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cccc--CCCceEEEECCCCC
Confidence 999999999998887776542 222 347999999999998754221 1111 12479999999999
Q ss_pred CchHHHHHHHHHH
Q 005908 163 QVPDVFYYAQKAV 175 (670)
Q Consensus 163 gi~~l~~~i~~~~ 175 (670)
|++++++++.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999887643
No 321
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.73 E-value=1.6e-17 Score=147.17 Aligned_cols=113 Identities=31% Similarity=0.427 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CC-CCCCCCC-eE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVP-EK-VPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~-~~-~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
||+|+|++|||||||+++|++..+. .. .....+. .. ...........+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 11 1111111 11 1223334455699999999988888778889999999999
Q ss_pred EECCChhhHHHHHHH--HHHHHHhcCCCCCEEEEEeCCC
Q 005908 90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD 126 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~--~~~~l~~~~~~~pvilv~NK~D 126 (670)
||++++.+++.+.+. |+..++...+++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999998643 6666666667899999999998
No 322
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=4.8e-17 Score=157.32 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908 425 RCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~--~~~~~~~------------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~ 490 (670)
+|+++|.+|||||||+++|++ +.+...+ ..+.+..+......+.++...+.+||++|++.+...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-- 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE-- 81 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH--
Confidence 799999999999999999997 4443322 012223333333344445678889999999998887
Q ss_pred hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHh------
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL------ 562 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~------ 562 (670)
...+++.+|++++|+|++++. +.....++..+... ++|+++|+||+|+...... .++..++...+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ 154 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 788999999999999999853 34444444444332 6899999999999753321 33344443332
Q ss_pred -CCCCcEEeecccC-ChHH
Q 005908 563 -GIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 563 -~~~~~~~vSA~~g-~v~~ 579 (670)
+. +++++||++| |+.+
T Consensus 155 ~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 155 LDF-PVLYASAKNGWASLN 172 (194)
T ss_pred Ccc-CEEEeehhccccccc
Confidence 33 5999999999 8743
No 323
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.73 E-value=3.2e-17 Score=158.34 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCCC----CCCC-CCCeEeCCcc------------cCCceeEEEEeCCCCcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATE----SVPEK----VPPV-HAPTRLPPDF------------YPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~----~~~~~----~~~~-~~~~~~~~~~------------~~~~~~~~i~Dt~G~~~ 71 (670)
++|+++|++|||||||+++|++. .+... .+++ .........+ ...++.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111 1111 1111111111 13377899999999865
Q ss_pred chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc-chhhhhhHHHHHh---
Q 005908 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF--- 147 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~--- 147 (670)
+........+.+|++++|+|+++......... +. ..... ++|+++|+||+|+....... ...+..+.+...+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 54444455677899999999987554443321 22 22333 67999999999987432210 1111112121111
Q ss_pred c-cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 148 ~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+ ...+++++||++|.|++++++.+...+..|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 123799999999999999999999887654
No 324
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=156.42 Aligned_cols=163 Identities=25% Similarity=0.331 Sum_probs=130.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|.+|||||||+++|.++.+...+.+|.+..+........+...++.+||++|+++++.+ +..++.++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~--~~~y~~~~~~~l 82 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL--RPEYYRGANGIL 82 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH--HHHHhcCCCEEE
Confidence 389999999999999999999999999998888887777666666545677889999999999998 889999999999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-------------HHHHHHHHHHh--CCCC
Q 005908 503 FVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQEL--GIEP 566 (670)
Q Consensus 503 lv~D~s~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~~~~~~~~~~--~~~~ 566 (670)
+|+|.++ ..+++....|...+...... ..|+++|+||+|+...... ........... ....
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA 159 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence 9999998 55666677888888877642 5899999999999886421 11112222222 1223
Q ss_pred cEEeecc--cC-ChHHHHHHHHHHHhC
Q 005908 567 PIPVSMK--SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 567 ~~~vSA~--~g-~v~~l~~~l~~~~~~ 590 (670)
++++||+ ++ ++.++|..+.+.+..
T Consensus 160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 160 LLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 8999999 99 999999999998854
No 325
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=6.1e-17 Score=152.04 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=108.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-CCCCeEeCCcccCCceeEEEEeCCCCccchh--------hhHHHhc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK 81 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 81 (670)
...+|+++|.+|+|||||+|++.+.......+. ..........+...+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998874332111 1111112223445568899999999865432 2235688
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
.+|++++|+|+++..+.. ...+...+... +.|+++|+||+|+...... ..+....+....+ ..+++++|++++
T Consensus 82 ~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~~~ 154 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISALKG 154 (168)
T ss_pred hCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEeccC
Confidence 899999999998873222 22355556555 7899999999999743222 3344444544443 247999999999
Q ss_pred CCchHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKA 174 (670)
Q Consensus 162 ~gi~~l~~~i~~~ 174 (670)
.|++++++.+.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999988754
No 326
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=6.5e-17 Score=176.36 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=113.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh-----------h
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------L 76 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 76 (670)
...++|+++|++|||||||+|+|++... ....+++.... ....+..++..+.+|||||+.+.... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS-IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc-EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4568999999999999999999998763 33344422221 22233345568999999997543321 1
Q ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEE
Q 005908 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV 154 (670)
Q Consensus 77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (670)
..+++.+|++|+|+|++++.+..+.. +...+... ++|+++|+||+|+... .. ...+....+...+.. ..+++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCceE
Confidence 24789999999999999887777653 66666555 7999999999999721 11 122333333333332 24799
Q ss_pred EeCcccCCCchHHHHHHHHHHcC
Q 005908 155 ECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
++||++|.|++++|+.+.+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999886543
No 327
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=7.1e-17 Score=156.52 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=107.2
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc----------cchh
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKG 74 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 74 (670)
+.......++|+++|++|||||||+|+|++.++.....++.+.+.. ..+...+..+.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL-INFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE-EEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 3445556789999999999999999999998754443333333321 1111224689999999953 2223
Q ss_pred hhHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908 75 KLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (670)
Q Consensus 75 ~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (670)
....+++.+ +++++|+|.+++.+.... .+...+... ++|+++++||+|+.+........+.+....... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CC
Confidence 334455544 678899998776554432 244455544 789999999999875432201112222232222 23
Q ss_pred eEEEeCcccCCCchHHHHHHHHHHc
Q 005908 152 TCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+++++||++|.|++++++.+.+.+.
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999998876643
No 328
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=4.5e-17 Score=154.86 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=101.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccc----hhh---hHHHhccCCEEE
Q 005908 17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGK---LNEELKRADAVV 87 (670)
Q Consensus 17 ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~~---~~~~~~~ad~ii 87 (670)
|+|++|||||||+|+|.+..+ ....+++.... ....+... +..+.+|||||+.+. ... ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP-NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecC-cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999874 22232211111 11223344 788999999997431 122 234578899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHHhcC--------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeE
Q 005908 88 LTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (670)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (670)
+|+|+++. .+++.... |...+.... .++|+++|+||+|+...... . ......... ....++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~-~~~~~~~~~--~~~~~~ 154 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-E-EELVRELAL--EEGAEV 154 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-H-HHHHHHHhc--CCCCCE
Confidence 99999988 46766653 666665432 37999999999999765433 1 110111111 122469
Q ss_pred EEeCcccCCCchHHHHHHHHH
Q 005908 154 VECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 154 ~~~SA~~~~gi~~l~~~i~~~ 174 (670)
+++||+++.|++++++.+...
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEehhhhcCHHHHHHHHHhh
Confidence 999999999999999988653
No 329
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.2e-16 Score=169.40 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccC-CceeEEEEeCCCCccc----hhhhH---HHhccCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLEN----KGKLN---EELKRAD 84 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~----~~~~~---~~~~~ad 84 (670)
.|+|||.||||||||+|+|++.+.. .++|.++...... .+.. ++..+.+|||||..+. ..+.. ..++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 7999999999999999999987632 2233321111111 1222 2678999999997532 12233 3456699
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 85 ~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++|+|+|+++. +.+++.. .|..++..+. .++|++||+||+|+... .+..+.+.+.++ .+++++||
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~iSA 309 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPISA 309 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEEeC
Confidence 99999999864 5666665 4888887754 37999999999998431 233455556655 36999999
Q ss_pred ccCCCchHHHHHHHHHHcCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~ 178 (670)
++++|++++++.+.+.+...
T Consensus 310 ~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999999998877543
No 330
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1.9e-16 Score=152.42 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc--------------ccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTT--------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~--------------~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~ 490 (670)
+|+|+|.+|+|||||+|+|++.........+. +............+...+.+||++|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-- 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE-- 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH--
Confidence 48999999999999999999887765442211 01111112222223467788999998777666
Q ss_pred hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC----
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG---- 563 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~---- 563 (670)
+..+++.+|++++|+|++++.+.. ...++..+... +.|+++|+||+|+...... .+.+++..+..+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 677889999999999999876543 33444444432 6999999999999863322 233333333322
Q ss_pred ---------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 564 ---------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 564 ---------~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
..+++++||++| |++++++.+.+.+.
T Consensus 152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 246899999999 99999999998864
No 331
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=155.94 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC-----------hhhHhhhhc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS 490 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g-----------~~~~~~~~~ 490 (670)
..++|+++|++|||||||+|+|.+..+.....++++ +....+... .+.+||++| ++.++.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~-- 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE-- 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH--
Confidence 458999999999999999999999876543334332 222233322 467899999 4555554
Q ss_pred hHhhc----ccccEEEEEEECCCcccH----------HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH
Q 005908 491 NKEAL----ASCDVTIFVYDSSDEYSW----------KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA 556 (670)
Q Consensus 491 ~~~~~----~~ad~vllv~D~s~~~s~----------~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 556 (670)
+..++ ..++++++|+|.++...+ .........+... ++|+++|+||+|+.+.. .+..+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~~--~~~~~ 151 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL------GIPPIVAVNKMDKIKNR--DEVLD 151 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc------CCCeEEEEECccccCcH--HHHHH
Confidence 33333 456889999998653221 0111222222222 69999999999997633 34566
Q ss_pred HHHHHhCCC--------CcEEeecccCChHHHHHHHHHHHhC
Q 005908 557 RVTQELGIE--------PPIPVSMKSKDLNNVFSRIIWAAEH 590 (670)
Q Consensus 557 ~~~~~~~~~--------~~~~vSA~~g~v~~l~~~l~~~~~~ 590 (670)
++++.++.. +++++||++||+++++++|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKGGIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccCCHHHHHHHHHHhhcC
Confidence 777777751 4799999999999999999987653
No 332
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=5.7e-17 Score=150.96 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhhhchHhhccccc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD 499 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~~~~~~~~~~ad 499 (670)
+|+++|++|||||||+|++.+.... ...+.+ +...+. .+||++|. +.+.. ....++.+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~---~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHA---LITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHH---HHHHHhcCC
Confidence 7999999999999999998875421 111221 112211 14888885 22222 234578999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~g-~v 577 (670)
++++|+|++++.++. ..|+..+. . ++|+++++||+|+.+. ..+...++++++++ .|++++||++| |+
T Consensus 67 ~il~v~d~~~~~s~~--~~~~~~~~---~----~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 67 MLIYVHGANDPESRL--PAGLLDIG---V----SKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred EEEEEEeCCCccccc--CHHHHhcc---C----CCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 999999999887653 33433321 1 5899999999998652 34556677777776 37999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|+++.+.+.+
T Consensus 136 ~~l~~~l~~~~~~ 148 (158)
T PRK15467 136 QQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHhchh
Confidence 9999999888754
No 333
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=2e-17 Score=168.26 Aligned_cols=228 Identities=12% Similarity=0.089 Sum_probs=147.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCC-----CCC--C--------CeE---eCCcccCCceeEEEEeCCCCccchhh
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVP-----PVH--A--------PTR---LPPDFYPDRVPVTIIDTSSSLENKGK 75 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-----~~~--~--------~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (670)
+|+|+|.+|+|||||+++|+......... +.. + ... ....+.++++.+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998643211111 100 0 000 11123356788999999999888788
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+..+++.+|++++|+|+++........ .+..+... ++|+++++||+|+... ...+....+...++...-.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence 889999999999999998875554332 44455555 7899999999998754 244556667677765334567
Q ss_pred eCcccCCCchHHHHHHHHHHcCCCC-CCC-----ccccccccHHHHHHH-HHHHHHhCCCCCCC-----CChHHHHHHhh
Q 005908 156 CSATTMIQVPDVFYYAQKAVLHPTA-PLF-----DHDEQTLKPRCVRAL-KRIFIICDHDMDGA-----LNDAELNEFQV 223 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l-~ri~~~~d~~~~~~-----l~~~el~~~q~ 223 (670)
++..+|.|+..+.+.+......... ..+ .........+++..| +.+....|..++.+ +..+++...-+
T Consensus 153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~ 232 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR 232 (268)
T ss_pred ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 7789999998888777655442211 000 001111112233333 44444444444444 44444433333
Q ss_pred h----------hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908 224 K----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (670)
Q Consensus 224 ~----------~~~~~l~~~~~~~l~~~l~~~~~~~ 249 (670)
+ +|+++....+++.+.+.+.+++|+|
T Consensus 233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 2 7889999999999999999998874
No 334
>PRK11058 GTPase HflX; Provisional
Probab=99.71 E-value=1.4e-16 Score=170.19 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccc--hhhhH------HHhcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR 82 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~ 82 (670)
.+|+|+|.||||||||+|+|++..+. .+.+++ .+.+.....+ .+...+.+|||+|.... ...+. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987743 233332 2222212222 22337899999998432 22222 44688
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
||++|+|+|++++.+++.+.. |...+.... .++|+++|+||+|+...... .... ...+ ...++++||++|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG 347 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG 347 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence 999999999999988877652 555554432 37999999999998643111 1111 1122 112589999999
Q ss_pred CCchHHHHHHHHHHcC
Q 005908 162 IQVPDVFYYAQKAVLH 177 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (670)
.|++++++.+.+.+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988743
No 335
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=1.6e-16 Score=147.83 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=101.4
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCC--CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h-hchHhhcccc
Q 005908 427 LLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEALASC 498 (670)
Q Consensus 427 ~ivG~~~vGKSSLin~l~~~~~~~--~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~~~a 498 (670)
+++|.+|||||||+|+|++..... ...+++. +.....+... ...+.+||++|...+.. + ......++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~-~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTR-DRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCcee-CceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 589999999999999999876332 2223333 2333444444 25678899999765432 1 0134567899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
|++++|+|+.++.+.... .....+... +.|+++|+||+|+.+.... ......++..+++++||++| |+
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCH
Confidence 999999999886554332 233333332 6999999999999874322 23334566656899999999 99
Q ss_pred HHHHHHHHHH
Q 005908 578 NNVFSRIIWA 587 (670)
Q Consensus 578 ~~l~~~l~~~ 587 (670)
+++++++.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 336
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2.1e-16 Score=169.42 Aligned_cols=169 Identities=18% Similarity=0.110 Sum_probs=114.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----hHhhh-hchHhhcc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVKKI-LSNKEALA 496 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----~~~~~-~~~~~~~~ 496 (670)
....|+|||.||||||||+|+|.+........+.++.....-.++..+ ..+.++|++|.. ....+ ......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 347899999999999999999998765543334333334444555553 467889999942 11111 11345678
Q ss_pred cccEEEEEEECCC----cccHHHHHHHHHHHHHhcCC--------CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908 497 SCDVTIFVYDSSD----EYSWKRTKELLVEVARLGED--------SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564 (670)
Q Consensus 497 ~ad~vllv~D~s~----~~s~~~~~~~~~~i~~~~~~--------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 564 (670)
.+|++|+|+|+++ ++.+.++..+..++..+... ...++|+|+|+||+|+.+.....+.........++
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~ 315 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW 315 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence 8999999999985 23555666666666655421 11168999999999997643333333333344455
Q ss_pred CCcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908 565 EPPIPVSMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 565 ~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
+ ++++||+++ |+++++++|.+.+...+.
T Consensus 316 ~-Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 P-VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred e-EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 4 999999999 999999999998865443
No 337
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=4.2e-16 Score=146.32 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHhhcc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA 496 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~ 496 (670)
..+|+++|.+|+|||||+|++.+...................+... ....+.+||++|....... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987654443222222222222222 3456778999995322211 01345678
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
.+|++++|+|++++.+ +....+...+... +.|+++|+||+|+.. .....+....+....+..+++++|++++
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence 9999999999998732 2223334444433 589999999999984 3333445555655555567999999999
Q ss_pred -ChHHHHHHHHHH
Q 005908 576 -DLNNVFSRIIWA 587 (670)
Q Consensus 576 -~v~~l~~~l~~~ 587 (670)
|++++++.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 999999998764
No 338
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=4.4e-16 Score=165.25 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhh-hchHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~a 498 (670)
..|+++|.||||||||+|+|++........+.++.....-.+.++ ....+.++|++|..+ ...+ ......+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 579999999999999999999877544333333322333344444 245677899998522 1112 1134556779
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 499 DVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 499 d~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
+++++|+|+++. +++++...|..++..+.... .++|+++|+||+|+.. ..+..+.+.+.++. +++++||+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~-~i~~iSA~tg 312 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPE---AEENLEEFKEKLGP-KVFPISALTG 312 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcC---CHHHHHHHHHHhCC-cEEEEeCCCC
Confidence 999999999864 67778888888887764321 1689999999999853 23455667777774 5999999999
Q ss_pred -ChHHHHHHHHHHHhCC
Q 005908 576 -DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~ 591 (670)
|++++++.|.+.+...
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 9999999999887543
No 339
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.70 E-value=1.1e-16 Score=158.71 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=131.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CCCCCC-----------eEeCCcccCCceeEEEEeCCCCccchhh
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-------PPVHAP-----------TRLPPDFYPDRVPVTIIDTSSSLENKGK 75 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------~~~~~~-----------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (670)
+|+++|++|+|||||+++|+...-.... .+..+. ......+.+++.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864311110 000000 0012234467889999999999999888
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEE
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+..+++.+|++++|+|+++...... +.++..+++. ++|+++++||+|+... ...+.+..+...++.. ++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~ 150 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP 150 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence 8999999999999999988654432 2467777766 7999999999998754 3456677777777642 333
Q ss_pred eCcccCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCC-----CCCCChHHHHHHhhh------
Q 005908 156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELNEFQVK------ 224 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~-----~~~l~~~el~~~q~~------ 224 (670)
+.-- ++...+ . ...... ...++.+....|..+ ++.++.+|+...-++
T Consensus 151 ~~~p---~~~~~~--------~--------~~~~~~---~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 151 MQKV---GLAPNI--------C--------ETNEID---DEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred EECC---cEeeee--------e--------eeeecc---HHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 2211 000000 0 000011 122233333333333 334555555444333
Q ss_pred ----hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908 225 ----CFNAPLQPAEIVGVKRVVQEKQHDG 249 (670)
Q Consensus 225 ----~~~~~l~~~~~~~l~~~l~~~~~~~ 249 (670)
+|++++...++..|++.+.+.+|+|
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 7999999999999999999999875
No 340
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.70 E-value=2e-16 Score=145.53 Aligned_cols=153 Identities=23% Similarity=0.278 Sum_probs=110.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC
Q 005908 17 VVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (670)
Q Consensus 17 ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~ 94 (670)
|+|++|+|||||++++.+... .....++. ...............+.+||+||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 33322222 2222333333457889999999998887777889999999999999999
Q ss_pred hhhHHHHHHHH-HHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHH
Q 005908 95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (670)
Q Consensus 95 ~~s~~~~~~~~-~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 172 (670)
+.++......+ .........++|+++|+||+|+...... .. ........... ..+++++||+++.|+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SE-EELAEQLAKEL-GVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HH-HHHHHHHHhhc-CCcEEEEecCCCCChHHHHHHHh
Confidence 99988887531 2222334558999999999998765433 11 11012222222 24799999999999999999875
No 341
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=2.8e-16 Score=151.72 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC----CCCCC---C--CCcccceEEEEEEc----------CCCceEEEEEecCChhh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---A--PTTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG 484 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~----~~~~~---~--~t~~~~~~~~~vd~----------~g~~~~~~i~d~~g~~~ 484 (670)
++|+++|++|||||||+++|++.. +.... . .|....+....+.. .+....+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 11111 1 12222222222321 12356788899999865
Q ss_pred HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHH-HHH
Q 005908 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSAR-VTQ 560 (670)
Q Consensus 485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~-~~~ 560 (670)
+... .......+|++++|+|++++.+......+. ..... +.|+++|+||+|+...... .++..+ +..
T Consensus 81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 5332 345567789999999999875544433222 11111 5899999999999753322 122222 111
Q ss_pred Hh-----CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 561 EL-----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 561 ~~-----~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
.+ ...+++++||++| |++++++++...+.-|
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 11 1235999999999 9999999999987644
No 342
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=5.5e-16 Score=146.70 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhH-------h--hhhchH
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------K--KILSNK 492 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-------~--~~~~~~ 492 (670)
+++|+++|.+|+|||||+|+|++........ +++........+...+ ..+.+||++|.... + ...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999987544333 2222222223333332 34678999995322 1 111234
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--ccHHHHHHHHHHhC---CCCc
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELG---IEPP 567 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~---~~~~ 567 (670)
..+..+|++++|+|++++.+.... .+...+... +.|+++|+||+|+.+.. ......+.+.+.++ ..++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCce
Confidence 567899999999999998775443 333333332 68999999999998752 22222333444443 3469
Q ss_pred EEeecccC-ChHHHHHHHHHH
Q 005908 568 IPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~l~~~ 587 (670)
+++||+++ |++++++.+.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 99999999 999999998764
No 343
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.70 E-value=2e-16 Score=150.38 Aligned_cols=158 Identities=21% Similarity=0.184 Sum_probs=103.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hhhh-chHhhcccccEE
Q 005908 428 LFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKEALASCDVT 501 (670)
Q Consensus 428 ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~~~-~~~~~~~~ad~v 501 (670)
|+|++|||||||+|+|.+.+... .+..++.. .....+..+ ....+.+||++|.... +.+. .....++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE-PNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeec-CcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999987522 22223322 222234444 2456788999996321 1121 124567889999
Q ss_pred EEEEECCCc------ccHHHHHHHHHHHHHhcCC----CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908 502 IFVYDSSDE------YSWKRTKELLVEVARLGED----SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 502 llv~D~s~~------~s~~~~~~~~~~i~~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (670)
++|+|++++ .++.....|...+...... ...+.|+++|+||+|+....................+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 4677777777777654321 001699999999999986433322211112222233599999
Q ss_pred cccC-ChHHHHHHHHHH
Q 005908 572 MKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~ 587 (670)
|+++ |++++++.+.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 9999 999999998764
No 344
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.69 E-value=2.6e-16 Score=174.26 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=107.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+..+|+++|++|+|||||+++|.+.++.... +++...... ..+.. ++..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~-~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGA-YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceE-EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 446689999999999999999999988876543 221111111 11222 233899999999999999998999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH------HHHhccCCeEEEeCccc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSATT 160 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA~~ 160 (670)
++|+|+++....+... .+...+.. ++|+++++||+|+.... .++....+ ...++...+++++||++
T Consensus 163 ILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999988743322222 22333433 79999999999986532 11111111 12222223699999999
Q ss_pred CCCchHHHHHHHH
Q 005908 161 MIQVPDVFYYAQK 173 (670)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (670)
|.||+++++.+..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999998764
No 345
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-16 Score=150.18 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=118.1
Q ss_pred ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------H----hh
Q 005908 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------V----KK 487 (670)
Q Consensus 418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~----~~ 487 (670)
....+.++|+|+|.||||||||.|.++|.....++..+.+++..+.-+-+. +...+.++||+|--. + .-
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 335677999999999999999999999999999988655555665666666 567788899999311 1 11
Q ss_pred hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-------------HHH
Q 005908 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQD 554 (670)
Q Consensus 488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~~ 554 (670)
+.....++..||++++|+|+++.... --...+..+..+. ++|-++|.||+|....+.. ...
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~-l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTP-LHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCc-cChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 22346678899999999999964221 1123344455553 6999999999998763321 111
Q ss_pred HHHHHHHhCCC----------------CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 555 SARVTQELGIE----------------PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 555 ~~~~~~~~~~~----------------~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
..++.+++... .+|.+||++| |++++-++|+.++....
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 22333333222 3899999999 99999999999885433
No 346
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=1.2e-16 Score=161.17 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=140.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CCCC---------CCeE--eCCcccCCceeEEEEeCCCCccchhh
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-------PPVH---------APTR--LPPDFYPDRVPVTIIDTSSSLENKGK 75 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (670)
+|+|+|++|+|||||+++|+...-.... ..+. +.+. ....+.+.+.++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742211000 0000 0000 11233456889999999999888888
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeE
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (670)
+..+++.+|++|+|+|+.+...-.. ..++..++.. ++|+++++||+|+.+.. .......+...++. +...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence 8899999999999999887543332 2356666665 78999999999987532 23344555555543 2346
Q ss_pred EEeCcccC-CCchHHHHHHHHHHcCC-C--CCC-----CccccccccHHHHHHH-HHHHHHhCCCCCCC-----CChHHH
Q 005908 154 VECSATTM-IQVPDVFYYAQKAVLHP-T--APL-----FDHDEQTLKPRCVRAL-KRIFIICDHDMDGA-----LNDAEL 218 (670)
Q Consensus 154 ~~~SA~~~-~gi~~l~~~i~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~l-~ri~~~~d~~~~~~-----l~~~el 218 (670)
+++|+..+ .|+-+++. ..++.. . ... .+........+++..| +.+....|..++.| ++.+++
T Consensus 153 ~Pisa~~~f~g~vd~~~---~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el 229 (270)
T cd01886 153 LPIGEEDDFRGVVDLIE---MKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI 229 (270)
T ss_pred eccccCCCceEEEEccc---cEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 88998844 45555443 222211 1 000 0011112223444444 55555555544444 444554
Q ss_pred HHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908 219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (670)
Q Consensus 219 ~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~ 249 (670)
...-+. +|++++...++..+++.+.+++|+|
T Consensus 230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 433332 7899999999999999999999875
No 347
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=5e-16 Score=148.14 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=96.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 489 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~ 489 (670)
.+..++|+|+|.+|||||||+|++++..+.....++.+.......+..++ .+.+||++|. +.+..+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~- 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL- 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH-
Confidence 35678999999999999999999999864333333333333334444442 5778999993 223322
Q ss_pred chHhhcc---cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC
Q 005908 490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG 563 (670)
Q Consensus 490 ~~~~~~~---~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 563 (670)
...+++ .+|++++|+|++++.+.... .++..+... +.|+++|+||+|+...... .+++++..+..+
T Consensus 91 -~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 91 -IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred -HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 223443 46899999999987664443 333334332 6899999999999764322 333444444443
Q ss_pred C-CCcEEeecccC-ChH
Q 005908 564 I-EPPIPVSMKSK-DLN 578 (670)
Q Consensus 564 ~-~~~~~vSA~~g-~v~ 578 (670)
. .+++++||++| |++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 2 26999999999 873
No 348
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.68 E-value=2.7e-16 Score=151.16 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=111.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------CCCCCCeEeCCccc--CCceeEEEEeCCCC
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------------PPVHAPTRLPPDFY--PDRVPVTIIDTSSS 69 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~ 69 (670)
+..+|+++|+.++|||||+++|+........ .+..... ....+. .....+.++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~-~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL-SFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS-EEEEEEBTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc-ccccccccccccceeecccccc
Confidence 5678999999999999999999855421110 0100000 111222 56789999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH----H
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----Q 145 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~----~ 145 (670)
.+|...+...++.+|++|+|+|+.+....... ..+..++.. ++|+++|+||+|+... ...+..+++. +
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhcc
Confidence 99988888999999999999999876544432 366667766 8999999999999832 2333333333 3
Q ss_pred Hhcc----CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 146 QFRE----IETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 146 ~~~~----~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
..+. ..+++++||++|.|+++|++.+.+.+.
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3322 347999999999999999999887653
No 349
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=1.5e-16 Score=160.43 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----------CC------------eEeCCcccCCceeEEEEeCCCCc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------AP------------TRLPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----------~~------------~~~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
-+|+|+|++|+|||||+++|+...-.....+.. .. ......+.+.++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998543111111100 00 00112455678999999999999
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (670)
+|......+++.+|++|+|+|+++...... ..++...... ++|+++++||+|+.... ..+.+..+...++..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~ 154 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGID 154 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCC
Confidence 888778888999999999999987543222 2355555554 79999999999986542 223345555666532
Q ss_pred CeEEEeCcccCCCchHHHHHHHHHHcCC-CC--C-CC-----ccccccccHHHH-HHHHHHHHHhCCCCCCCCChHHHHH
Q 005908 151 ETCVECSATTMIQVPDVFYYAQKAVLHP-TA--P-LF-----DHDEQTLKPRCV-RALKRIFIICDHDMDGALNDAELNE 220 (670)
Q Consensus 151 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~-~~--~-~~-----~~~~~~~~~~~~-~~l~ri~~~~d~~~~~~l~~~el~~ 220 (670)
.-.+......+.++..+.+.+...+... .. . .. .....+...+.. ..+++.+...+ ...+++..
T Consensus 155 ~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~------~~~~~~~~ 228 (267)
T cd04169 155 CTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELE------LLEGAGPE 228 (267)
T ss_pred ceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCc------cchhhhHH
Confidence 2223333334444444444443333211 10 0 00 001011111111 11133222211 12222111
Q ss_pred H-----hhh-----hcCCCCCHHHHHHHHHHHhhhcCCC
Q 005908 221 F-----QVK-----CFNAPLQPAEIVGVKRVVQEKQHDG 249 (670)
Q Consensus 221 ~-----q~~-----~~~~~l~~~~~~~l~~~l~~~~~~~ 249 (670)
. +.. +|++++...++..|++.+.+++|+|
T Consensus 229 ~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 229 FDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred HhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 1 111 7999999999999999999999975
No 350
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=9.3e-16 Score=141.10 Aligned_cols=153 Identities=24% Similarity=0.359 Sum_probs=112.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEE
Q 005908 428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (670)
Q Consensus 428 ivG~~~vGKSSLin~l~~~~~-~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D 506 (670)
|+|++|+|||||+|++.+... .....+|. ..........++....+.+||++|...+... ....++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--RRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhH--HHHHhcCCCEEEEEEE
Confidence 589999999999999999877 33433444 5555555555545677889999998777665 5778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-HHHHHHhCCCCcEEeecccC-ChHHHHHHH
Q 005908 507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSK-DLNNVFSRI 584 (670)
Q Consensus 507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l 584 (670)
++++.++.....|........... +.|+++|+||+|+.......... ..........+++++||+++ |+.+++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999988888777632222222222 79999999999998754433221 22333334456999999999 999999987
Q ss_pred H
Q 005908 585 I 585 (670)
Q Consensus 585 ~ 585 (670)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 351
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.4e-16 Score=133.31 Aligned_cols=162 Identities=8% Similarity=0.076 Sum_probs=126.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.++++|+.+|-.++||||++..|..+......|++..... .+...+++|++||.+|++..+.+|..|+.+..++|||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4589999999999999999999998887776666443332 3456789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
+|..+++..++.+++++..+... -.+.|+++.+||.|+..........+ ..++..--+..-.+.++||.+|.|+.|-|
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d-~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQD-KLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHH-HhccccccCCccEeeccccccchhHHHHH
Confidence 99999999999988888888543 24789999999999998755411111 11111111111247889999999999999
Q ss_pred HHHHHHH
Q 005908 169 YYAQKAV 175 (670)
Q Consensus 169 ~~i~~~~ 175 (670)
.++...+
T Consensus 171 swlsnn~ 177 (180)
T KOG0071|consen 171 SWLSNNL 177 (180)
T ss_pred HHHHhhc
Confidence 9887654
No 352
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.68 E-value=1.8e-15 Score=130.83 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=131.1
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccC-CceeEEEEeCCCCccc-hhhhHHHh
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLEN-KGKLNEEL 80 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~-~~~~~~~~ 80 (670)
+..+.+..||+++|.-+||||+++.+++.++.... .|++.+.+...++.+. -.-.+.++||.|...+ ..+-..++
T Consensus 3 ~~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~ 82 (198)
T KOG3883|consen 3 NAKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYF 82 (198)
T ss_pred chhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHh
Confidence 34556789999999999999999999998775444 3444444433333222 2456899999998877 44555788
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
.-+|++++|||..+++||+.+.. +.++|.+.. ..+||++.+||+|+.+++.+ ..+....+++.-. ...++++|
T Consensus 83 q~aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEk--vkl~eVta 157 (198)
T KOG3883|consen 83 QFADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREK--VKLWEVTA 157 (198)
T ss_pred ccCceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhh--eeEEEEEe
Confidence 89999999999999999999873 777776643 36899999999999988777 3455566766654 36999999
Q ss_pred ccCCCchHHHHHHHHHHcCCCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~ 180 (670)
++...+-+.|..+...+.++..
T Consensus 158 ~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 158 MDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred ccchhhhhHHHHHHHhccCCcc
Confidence 9999999999999998876653
No 353
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=3.8e-16 Score=174.96 Aligned_cols=158 Identities=14% Similarity=0.179 Sum_probs=111.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CCC---CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVH---APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
..+..+|+|+|++|+|||||+++|.+..+..... ++. ..+.........+..+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4566899999999999999999999887654422 211 111122222235689999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH------HHHhccCCeEEEeCc
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSA 158 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA 158 (670)
++|+|+|+++........ .+..+... ++|+|+|+||+|+.... .......+ ...++...+++++||
T Consensus 321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999998753333222 22334433 79999999999997532 11111221 223333357999999
Q ss_pred ccCCCchHHHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQKA 174 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (670)
++|.||+++++.+...
T Consensus 393 ktG~GIdeLle~I~~l 408 (742)
T CHL00189 393 SQGTNIDKLLETILLL 408 (742)
T ss_pred CCCCCHHHHHHhhhhh
Confidence 9999999999988764
No 354
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.68 E-value=3.5e-16 Score=138.50 Aligned_cols=114 Identities=22% Similarity=0.322 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
||+|+|++|||||||+++|++..+. ....++....+........+....+.+||..|++.+... ....+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ--HQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT--SHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc--ccchhhcCcEEE
Confidence 7999999999999999999998877 122244455566556666655556788999999877765 455689999999
Q ss_pred EEEECCCcccHHHHHHH---HHHHHHhcCCCCCCCcEEEEEeCCC
Q 005908 503 FVYDSSDEYSWKRTKEL---LVEVARLGEDSGYGVPCLLIASKDD 544 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~---~~~i~~~~~~~~~~~piilv~NK~D 544 (670)
+|||++++.|++.+..+ +..+..... +.|+++|+||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~----~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK----NIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHSS----CSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccCC----CCCEEEEEeccC
Confidence 99999999999987655 444444322 699999999998
No 355
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.68 E-value=5.2e-16 Score=175.55 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=110.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+...|+|+|+.++|||||+++|.+..+.....+......-...+...+..++||||||++.|..++...++.+|++|
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 35677899999999999999999999877655422211111111123344678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCCCc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|||+++...-+... .+..++.. ++|+|+++||+|+...... .....+ ..+...++...+++++||++|.||
T Consensus 366 LVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 366 LVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999998743222221 22333434 7999999999999653211 011111 112233333347999999999999
Q ss_pred hHHHHHHHH
Q 005908 165 PDVFYYAQK 173 (670)
Q Consensus 165 ~~l~~~i~~ 173 (670)
+++++.+..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999998764
No 356
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.68 E-value=9.2e-17 Score=139.05 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=132.4
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
.++.-.+||.++|++.+|||||+-.++++.+.+....+.+... ....+.+..+.+.|||.+|++++..+.+.+..++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 3455579999999999999999999999988765443333333 33445566788999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---cchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+++|+||++.+.++..+.+ |++..+..+...--|+||+|-|+.-.-.. .........+++-++. +.+.||+.++
T Consensus 95 aIlFmFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~s 171 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHS 171 (205)
T ss_pred EEEEEEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeecccc
Confidence 9999999999999999995 99999987655445789999996533222 0222334555666653 7999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 005908 162 IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (670)
.||+.+|..+..+++.-
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999888887644
No 357
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=1e-15 Score=142.32 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhcc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA 496 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~ 496 (670)
++|+++|++|+|||||+|++.+........ ++++.......+... ...+.+||++|...+.. ..+....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999887543322 333333333344443 35677899999533221 112446678
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
.+|++++|+|++++.+......+.. . . +.|+++|+||+|+...... .. .....+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----~---~--~~~vi~v~nK~D~~~~~~~------~~-~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----P---A--DKPIIVVLNKSDLLPDSEL------LS-LLAGKPIIAISAKTGE 143 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----h---c--CCCEEEEEEchhcCCcccc------cc-ccCCCceEEEECCCCC
Confidence 9999999999998877665544333 1 1 6999999999999874322 12 222346999999999
Q ss_pred ChHHHHHHHHHHH
Q 005908 576 DLNNVFSRIIWAA 588 (670)
Q Consensus 576 ~v~~l~~~l~~~~ 588 (670)
|+++++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999988754
No 358
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.68 E-value=7.3e-16 Score=149.64 Aligned_cols=117 Identities=19% Similarity=0.285 Sum_probs=90.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccC-CEEEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA 91 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~ii~v~d 91 (670)
+|+++|++|||||||+++|..+.+....+++..... ........+..+.+|||||+.++...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999887666554322221 1111113467899999999999988888999999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCC
Q 005908 92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~ 130 (670)
+++. .++....++|+..+.. ..+++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 6777777656555533 2358999999999998764
No 359
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=2.1e-15 Score=146.15 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=103.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 489 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~ 489 (670)
.+..++|+++|.+|||||||+|+|++.++.....++.+....+..... ...+.+||++|. +.+..+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~- 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL- 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH-
Confidence 446689999999999999999999998654444444443333333333 246778999993 333333
Q ss_pred chHhhcc---cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--C
Q 005908 490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--I 564 (670)
Q Consensus 490 ~~~~~~~---~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~ 564 (670)
...+++ .++++++|+|++++.+... ..+...+... +.|+++++||+|+..........+.+.+.++ .
T Consensus 97 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 97 -IEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred -HHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 233443 4578999999888655332 1222223222 6899999999999764332222222323222 2
Q ss_pred CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 565 EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 565 ~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
.+++++||++| |++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35999999999 99999999987764
No 360
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=4.9e-16 Score=166.64 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=105.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch----h---hhHHHhccC
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----G---KLNEELKRA 83 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~a 83 (670)
-..|+|||.||||||||+|+|++.+.. .++|.++... ....+...+..+.+|||||+.+.. . ..-.+++.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P-~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP-NLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc-eEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 457999999999999999999987632 2244322111 122344456789999999974321 1 122456789
Q ss_pred CEEEEEEECCCh----hhHHHHHHHHHHHHHhcC------------CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908 84 DAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (670)
Q Consensus 84 d~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (670)
|++|+|+|+++. +.++++. .|..++..+. .++|+|+|+||+|+.+.... .+.........
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~~~ 313 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELEAR 313 (500)
T ss_pred CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHHHc
Confidence 999999999753 3444443 2444454332 26899999999999753321 11222222233
Q ss_pred ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 148 REIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+ .+++++||+++.|++++++++.+.+..
T Consensus 314 g--~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 G--WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred C--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3 369999999999999999999887643
No 361
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.5e-16 Score=143.08 Aligned_cols=160 Identities=17% Similarity=0.303 Sum_probs=139.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..++++++|+.|.|||+++++...++|...+.+|++....-.+.+++-+..++..||++|++.+..+ ...++-.+.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--rdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--RDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--ccccEEeccee
Confidence 4689999999999999999999999999999999998888788888866788999999999988887 77788899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+++||++.+.+..++.+|.+.+.+.+. ++||+++|||.|...++ .....-.+-+..++. ++++||+++ |.+.-
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~-~k~k~v~~~rkknl~-y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK-VKAKPVSFHRKKNLQ-YYEISAKSNYNFERP 160 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc-cccccceeeecccce-eEEeecccccccccc
Confidence 999999999999999999999998886 79999999999987744 233333455556665 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|.++.+.+.
T Consensus 161 Fl~LarKl~ 169 (216)
T KOG0096|consen 161 FLWLARKLT 169 (216)
T ss_pred hHHHhhhhc
Confidence 999999873
No 362
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.7e-16 Score=142.81 Aligned_cols=162 Identities=17% Similarity=0.297 Sum_probs=131.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCccc-CC-ceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-PD-RVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+|++++|+.|.||||++++.+.++|...++.+.+....+..+. +. .+++..|||.|++.+.....-++-++.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 5689999999999999999999999999998777666665443333 33 499999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
++||++.+.++.++.. |...+.+.+.++||+++|||.|..... + ....+... .+..+.++++||+++.|.+.-
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~-~--k~k~v~~~---rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK-V--KAKPVSFH---RKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc-c--ccccceee---ecccceeEEeecccccccccc
Confidence 9999999999999984 999998888899999999999976532 1 01111111 112246999999999999999
Q ss_pred HHHHHHHHcCC
Q 005908 168 FYYAQKAVLHP 178 (670)
Q Consensus 168 ~~~i~~~~~~~ 178 (670)
|-++.+.+.-.
T Consensus 161 Fl~LarKl~G~ 171 (216)
T KOG0096|consen 161 FLWLARKLTGD 171 (216)
T ss_pred hHHHhhhhcCC
Confidence 99999988543
No 363
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=1.1e-15 Score=170.38 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCC------CCCeE----eCCcc---cCCceeEEEEeCCCCccc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES-------VPEKVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLEN 72 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~-------~~~~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~ 72 (670)
-+|+|+|+.++|||||+++|+... +...+..+ .+.+. ....+ +...+.++||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998753 11111110 01111 11112 234588999999999999
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-C
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-E 151 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (670)
...+..+++.+|++|+|+|+++..+.+.... |...+. . ++|+++|+||+|+.... ..+....+.+.++.. .
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998777766553 544443 2 78999999999986432 223334454544421 2
Q ss_pred eEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 152 TCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
.++++||++|.||+++|+.+.+.+..+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4899999999999999999998876553
No 364
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=6.5e-16 Score=150.26 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCC-CCCCC-CCeEeCCcc-------------------------c------C
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVH-APTRLPPDF-------------------------Y------P 56 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~---~~~-~~~~~-~~~~~~~~~-------------------------~------~ 56 (670)
++|+++|+.|+|||||+..+.+... ... ..+.. ......... . .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976421 111 00000 000000000 0 0
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 136 (670)
....+.||||||++++...+...+..+|++++|+|++++.......+ .+..+... ...|+++|+||+|+.........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM-GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc-CCCcEEEEEEchhccCHHHHHHH
Confidence 12679999999998887777788889999999999987311111111 22223333 13579999999999753211011
Q ss_pred hhhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 137 EEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
.+.+..+...+ ....+++++||++|.||+++++.+.+.+..+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 12222222221 1123699999999999999999998876543
No 365
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.3e-15 Score=166.22 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh----Hhh-h-hchHhhcc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-I-LSNKEALA 496 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~-~-~~~~~~~~ 496 (670)
++|+|+|++|||||||+|+|.+.....+.. +.++.+.....+.+.| ..+.+|||+|.+. +.. + .....++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999987644333 3333334444555553 6788899999765 111 1 11456789
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
.+|++|+|+|++++.+.... .....+... ++|+++|+||+|+.+. .....++ ..+++..++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~~------~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE-EIAKILRKS------NKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHHc------CCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 99999999999987553321 222223332 6999999999997652 2222333 3566666899999999
Q ss_pred ChHHHHHHHHHHH
Q 005908 576 DLNNVFSRIIWAA 588 (670)
Q Consensus 576 ~v~~l~~~l~~~~ 588 (670)
|++++++.+.+..
T Consensus 149 gv~~l~~~I~~~~ 161 (435)
T PRK00093 149 GIGDLLDAILEEL 161 (435)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998843
No 366
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=1.7e-15 Score=167.76 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=112.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
...+++|+++|.+|+|||||+++|.+..+.....++++.......+.+++ ...+.+||++|++.|..+ +...+..+|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~--r~rga~~aD 160 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSM--RARGAKVTD 160 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhH--HHhhhccCC
Confidence 45668999999999999999999999887765555444444445566553 337788999999999887 667889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC--------CCcEEee
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS 571 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS 571 (670)
++++|+|++++..-+.. ..+...... ++|+++++||+|+.... .+........+++ .+++++|
T Consensus 161 iaILVVda~dgv~~qT~-e~i~~~~~~------~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTI-EAISHAKAA------NVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEEEEECCCCCCHhHH-HHHHHHHHc------CCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 99999999986432222 222332222 69999999999996522 2223333333321 2589999
Q ss_pred cccC-ChHHHHHHHHHH
Q 005908 572 MKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~ 587 (670)
|++| |++++++.+...
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 9999 999999998754
No 367
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=2.2e-15 Score=167.83 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-------CCCCC------cccceEEEEE--Ec---CCCceEEEEEecCChhhH
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAPT------TGEQYAVNVV--DQ---PGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~-------~~~~t------~~~~~~~~~v--d~---~g~~~~~~i~d~~g~~~~ 485 (670)
-+|+|+|.+++|||||+++|+...... .+..+ .+..+....+ .+ +|....+.+|||+|+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998753211 11111 1222322222 22 344568889999999998
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 565 (670)
... ...+++.+|++|+|+|++++.+.+....|...+. . ++|+++|+||+|+.... ..+..+++.+.+++.
T Consensus 84 ~~~--v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYE--VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGLD 153 (595)
T ss_pred HHH--HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCCC
Confidence 876 6788999999999999999888777766655442 1 68999999999987532 233445666667764
Q ss_pred --CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 566 --~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
+++++||++| |++++|+.|.+.+..|.
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4899999999 99999999999887654
No 368
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=6.6e-16 Score=177.10 Aligned_cols=159 Identities=17% Similarity=0.122 Sum_probs=111.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh-hH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK-LN 77 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~ 77 (670)
..+||+|+|++|||||||+|+|++.++ +...+++.... ....+..++..+.+|||||+.+ +... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~-~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP-VDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCc-ceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999999874 44455433222 2223334566788999999642 1111 12
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEE
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVE 155 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 155 (670)
.+++.+|++++|+|+++..+..+.. +...+... ++|+++|+||+|+.+.... ......+...+. ...++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~---~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR---QRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH---HHHHHHHHHhccCCCCCCEEE
Confidence 4578999999999999988888764 55666554 7999999999999753221 111112222221 1236799
Q ss_pred eCcccCCCchHHHHHHHHHHcC
Q 005908 156 CSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+||++|.||+++++.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 369
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=1.6e-15 Score=172.71 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=113.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh----------hHHH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------LNEE 79 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 79 (670)
+.++|+++|+||||||||+|+|++.+. ..+.+++.. ..+...+..++.++.+|||||+.++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 468999999999999999999998763 333555322 2234456677889999999998765321 1223
Q ss_pred h--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 80 L--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 80 ~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+ ..+|++++|+|.++.+... +|...+.+. ++|+++|+||+|+.+.+.. ....+.+.+.++ .+++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG--~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLG--CPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhC--CCEEEEE
Confidence 2 4799999999998765422 355666665 7999999999998755443 234566777777 3799999
Q ss_pred cccCCCchHHHHHHHHHH
Q 005908 158 ATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~ 175 (670)
|++|+|++++.+.+.+..
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999888765
No 370
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=7.7e-16 Score=171.46 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+.|+++|++|+|||||+++|++.. +... .+++.... ....+...+..+.+|||||++.|...+...+.++|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~-~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDL-GFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEe-EEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 469999999999999999999743 2222 12211111 111233445889999999999988888888999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEEEeCcccCC
Q 005908 89 TYACNQQ---STLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMI 162 (670)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~~~ 162 (670)
|+|+++. ++.+.+ ..++.. ++| +++|+||+|+.+........+.+..+.+.++. ..+++++||++|.
T Consensus 80 VVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 80 VVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 9999883 444433 334444 677 99999999997643221123344555554431 2479999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++++.+...+.
T Consensus 153 GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 153 GIGELKKELKNLLE 166 (581)
T ss_pred CchhHHHHHHHHHH
Confidence 99999998876553
No 371
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=5.6e-15 Score=150.19 Aligned_cols=174 Identities=22% Similarity=0.235 Sum_probs=119.4
Q ss_pred hhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC------
Q 005908 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP------ 481 (670)
Q Consensus 408 ~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g------ 481 (670)
+..+...+.+......+.|+++|.+|+|||||+|+|++...........+-+-..+.+.+++ ....++-||.|
T Consensus 177 ~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP 255 (411)
T COG2262 177 EKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLP 255 (411)
T ss_pred HHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCC
Confidence 33333344444456779999999999999999999998765533332222222234456663 45566678877
Q ss_pred hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH
Q 005908 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 561 (670)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 561 (670)
+....++..+......||++++|+|++++...+.+.....-+.+.... .+|+|+|.||+|+..... ....+...
T Consensus 256 ~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~~~---~~~~~~~~ 329 (411)
T COG2262 256 HPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLEDEE---ILAELERG 329 (411)
T ss_pred hHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCchh---hhhhhhhc
Confidence 445555555788889999999999999996655555555545444332 599999999999886433 11222222
Q ss_pred hCCCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 562 LGIEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 562 ~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
. ++.+.+||++| |++.|.+.|.+.+..
T Consensus 330 ~--~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 S--PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred C--CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 2 24899999999 999999999998864
No 372
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.65 E-value=6e-15 Score=127.63 Aligned_cols=167 Identities=18% Similarity=0.275 Sum_probs=136.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCc-eEEEEEecCChhhH-hhhhchHhhccc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGV-KKILSNKEALAS 497 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~-~~~~~~~~~~~~ 497 (670)
+..||+++|..+||||+++..++-++...... ||+.+ +++-.++++.+. ..+.+.||+|-... ..+ -..++.-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q~ 84 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQF 84 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhh--hHhHhcc
Confidence 45899999999999999999999777665444 56655 666777777543 46778999996554 334 6778899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|++++||+..+++||+.+..+-++|.+..... .+||++++||+|+.+.... ...++.|++.-... .++++|...
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~ 161 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP 161 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence 999999999999999999988888888765544 7999999999999765433 77788888888877 899999999
Q ss_pred ChHHHHHHHHHHHhCCCCC
Q 005908 576 DLNNVFSRIIWAAEHPHLN 594 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~~~ 594 (670)
.+-+.|.++...+..|...
T Consensus 162 sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred hhhhHHHHHHHhccCCccc
Confidence 9999999999988766544
No 373
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.65 E-value=7.9e-16 Score=132.20 Aligned_cols=157 Identities=19% Similarity=0.293 Sum_probs=126.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+.+.++|-.++|||||+|....+.+...-.||.+-+ ...+ ..|...+.+||.+|+..++++ +..+++.+++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~--tkgnvtiklwD~gGq~rfrsm--WerycR~v~a 91 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSM--WERYCRGVSA 91 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEe--ccCceEEEEEecCCCccHHHH--HHHHhhcCcE
Confidence 456899999999999999999999888877666676643 3333 226778888999999999999 9999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+++|+|+++++.....+..++.+.....-. ++|+++.|||.|+... -....+..++++. ..|.+|++
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCccc----ccHHHHHHHhCccccccceEEEEEEEEc
Confidence 999999999988888787777776555444 7999999999999872 2234455566653 36899999
Q ss_pred cC-ChHHHHHHHHHHHh
Q 005908 574 SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~ 589 (670)
.. |++-+.+++++.-.
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99 99999999988653
No 374
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.65 E-value=1.8e-15 Score=145.51 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=110.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-----CCcccceEEEEEEcCCCceEEEEEecCChh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~ 483 (670)
..++|+++|..++|||||+++|++....... . ...+.......+........+.++|++|+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999965432211 0 011112222223212366788899999998
Q ss_pred hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH----HHH
Q 005908 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVT 559 (670)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----~~~ 559 (670)
.+... ....+..+|++|+|+|+.++.. ......+..+... ++|+++|+||+|+... ...+..+ .+.
T Consensus 82 ~f~~~--~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 82 DFIKE--MIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL------GIPIIVVLNKMDLIEK-ELEEIIEEIKEKLL 151 (188)
T ss_dssp HHHHH--HHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT------T-SEEEEEETCTSSHH-HHHHHHHHHHHHHH
T ss_pred ceeec--ccceecccccceeeeecccccc-ccccccccccccc------ccceEEeeeeccchhh-hHHHHHHHHHHHhc
Confidence 87765 6777899999999999998855 3345555555555 7999999999999842 2222222 444
Q ss_pred HHhCC-----CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 560 QELGI-----EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 560 ~~~~~-----~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
+..+. .|++++||++| |+++|++.|.+.++
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 44443 35999999999 99999999998764
No 375
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.64 E-value=1.6e-15 Score=134.61 Aligned_cols=139 Identities=18% Similarity=0.283 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
||++||+.|+|||||+++|.+.+. .+..|....+.-..+|+||... +. ...+.++ .....+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDTPGEyi-----E~--~~~y~aL---i~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDTPGEYI-----EN--PRFYHAL---IVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEECChhhe-----eC--HHHHHHH---HHHHhhCCEEEEE
Confidence 799999999999999999999765 3345666666667788886322 11 1122232 4455799999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHH
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR 583 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~ 583 (670)
.|++++.+.- -..+. ... ++|+|-|+||+|+.......+.++++.+..|+..+|++|+.+| |+++|.++
T Consensus 71 ~dat~~~~~~-pP~fa----~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 71 QDATEPRSVF-PPGFA----SMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred ecCCCCCccC-Cchhh----ccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999874411 01111 111 6899999999999955556777888888999998999999999 99999998
Q ss_pred HH
Q 005908 584 II 585 (670)
Q Consensus 584 l~ 585 (670)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 376
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.64 E-value=2.6e-15 Score=165.89 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=104.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----CCeEeCCccc--------------CCceeEEEEeCCCCccc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY--------------PDRVPVTIIDTSSSLEN 72 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~ 72 (670)
+..-|+++|++|+|||||+|+|.+..+....++.. +.+....... .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34569999999999999999999988765543311 1111111110 01123889999999999
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---cch-----------hh
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL-----------EE 138 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~-----------~~ 138 (670)
..++..+++.+|++++|+|+++..+.+... .+..++.. ++|+++++||+|+...... ... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 998899999999999999998743222221 23334444 7899999999999642100 000 00
Q ss_pred ----h----hhHHH------------HHhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908 139 ----V----MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK 173 (670)
Q Consensus 139 ----~----~~~~~------------~~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 173 (670)
. ..++. ..++...+++++||++|+|++++++.+..
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 00111 12333358999999999999999987754
No 377
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.63 E-value=4.7e-15 Score=146.86 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch-------hhhHHHhccCCE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA 85 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~ 85 (670)
+|+++|.+|||||||+|+|++... ..+++.+. .......+...+..+++|||||+.+.. .....+++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 799999999999999999998763 22233221 111233344567889999999975432 123467899999
Q ss_pred EEEEEECCChhh-HHHHHHHH----------------------------------------HHHHHhc------------
Q 005908 86 VVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL------------ 112 (670)
Q Consensus 86 ii~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~------------ 112 (670)
+++|+|++++.. .+.+.+.+ ...++++
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 999999987652 22221111 1111111
Q ss_pred -------------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 113 -------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 113 -------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
...+|+++|+||+|+.... ....++.. .+++++||++|.|++++++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~-------~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE-------ELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHH-------HHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1236999999999986432 22233332 2589999999999999999988764
No 378
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=3.2e-15 Score=138.98 Aligned_cols=152 Identities=21% Similarity=0.174 Sum_probs=102.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchh-------hhHHHhccCCEE
Q 005908 17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADAV 86 (670)
Q Consensus 17 ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~i 86 (670)
|+|.+|+|||||++++++..+... .++...... ..... .....+.+|||||+..... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPV-EYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCe-EEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 589999999999999998764422 222111111 11112 2267899999999876543 334578999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
++|+|.++..+..... +....... +.|+++|+||+|+...... .................+++++||+++.|+.+
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 9999999887766653 34444444 8999999999999865433 11100011112222234799999999999999
Q ss_pred HHHHHHHH
Q 005908 167 VFYYAQKA 174 (670)
Q Consensus 167 l~~~i~~~ 174 (670)
+++.+.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99988764
No 379
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.1e-15 Score=134.82 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=127.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.....+|+++|-.|+||||++++|.-++.... .||++ +.+..+.+. ...+.+||..|++.++.+ +..|+++.+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~l--W~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPL--WKHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccc--hhhhccCCc
Confidence 45679999999999999999999998887766 57776 555666665 577888999999999999 999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC----CcEEeecccC
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE----PPIPVSMKSK 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~vSA~~g 575 (670)
++|+|+|.+|++.+.+.+..+..+....... +.|+++.+||.|+...-. ..++.+......+. .+..++|.+|
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQSTCAISG 163 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEeecccccc
Confidence 9999999999988888887777776655433 799999999999987322 22222222222211 3678999999
Q ss_pred -ChHHHHHHHHHHHhC
Q 005908 576 -DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~ 590 (670)
|+.+.++++.+.+..
T Consensus 164 ~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 164 EGLYEGLDWLSNNLKK 179 (181)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 999999999998764
No 380
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=6.8e-15 Score=163.94 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~---~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+.|+++|.+|+|||||+++|++.. +......+++.+.....+++++ ..+.+||++|++.|... +...+.++|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~--~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISN--AIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHH--HHhhhccCCE
Confidence 468999999999999999999743 2222233444445555566663 67889999999888766 6778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc---HHHHHHHHHHhCC---CCcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI---EPPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~~---~~~~~vSA~ 573 (670)
+++|+|++++... +..+.+..+... ++| +++|+||+|+.+.... .+++.++.+..++ .+++++||+
T Consensus 77 aILVVDa~~G~~~-qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 77 ALLVVDADEGVMT-QTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEEECCCCCcH-HHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999999985332 222333333322 577 9999999999864322 3455566665542 369999999
Q ss_pred cC-ChHHHHHHHHHHHhC
Q 005908 574 SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~ 590 (670)
+| |++++++.+.+.+..
T Consensus 150 tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 150 TGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 99 999999999887754
No 381
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=8.7e-15 Score=142.34 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEEEEE-----------------------cC--C----
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNVVD-----------------------QP--G---- 469 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~~vd-----------------------~~--g---- 469 (670)
++|+++|..++|||||+.++.+........ .+....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652111100 0111111100000 00 1
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~ 549 (670)
....+.+||++|++.+... +...+..+|++++|+|++++.........+..+.... ..|+++|+||+|+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~--~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMAT--MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHH--HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEEEEchhccCHH
Confidence 1156788999999887665 6777889999999999997421111222222222221 25799999999997633
Q ss_pred ccH---HHHHHHHHHh--CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 550 MAV---QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 550 ~~~---~~~~~~~~~~--~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
... +..+++.+.+ ...+++++||++| |++++++.+.+.+..|
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 222 2333333332 1235999999999 9999999999877643
No 382
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=1.4e-14 Score=165.15 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc--------hHhh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA 494 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~--------~~~~ 494 (670)
.++|+++|.||||||||+|+|++........+.++.+.....++. +...+.++|++|...+..... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999987653322232232233233433 345677899999755432100 1223
Q ss_pred --cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 495 --LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 495 --~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
...+|++++|+|+++.+. ...+..++.+. ++|+++|+||+|+.+++......+++.+.++.+ ++++||
T Consensus 81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-VvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcchh---hHHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEEEEe
Confidence 258999999999998643 23344555544 799999999999986555567778888999976 999999
Q ss_pred ccC-ChHHHHHHHHHHHh
Q 005908 573 KSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~ 589 (670)
++| |++++.+.+.+...
T Consensus 151 ~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQA 168 (772)
T ss_pred ecCCCHHHHHHHHHHhhh
Confidence 999 99999999988764
No 383
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.5e-14 Score=132.63 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhhc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS 490 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~~ 490 (670)
...+-|+++|++|||||||+|+|+++....-...|.+....+..+.+.++ +.++|.+| .+.+..+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~-- 96 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL-- 96 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH--
Confidence 45679999999999999999999997643333345554445555555532 44566666 2233333
Q ss_pred hHhhc---ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC--
Q 005908 491 NKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-- 565 (670)
Q Consensus 491 ~~~~~---~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 565 (670)
...|+ .+..++++++|+..+.. +...+.+.-+... ++|+++|+||+|+.+...........++.+...
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~-~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPK-DLDREMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 33444 34678999999988755 2233445555544 799999999999998666666666677666543
Q ss_pred -C--cEEeecccC-ChHHHHHHHHHHHh
Q 005908 566 -P--PIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 566 -~--~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
. ++.+|+.++ |++++...|.+.+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 788999999 99999999988764
No 384
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.62 E-value=3.5e-15 Score=129.36 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=141.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
-.+||.++|++.+|||||+-.++++++...+..+.+..+.-+.+...|....+.|||-.|++++..+ .+-+.+++-++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~--lPiac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM--LPIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc--CceeecCcEEE
Confidence 4599999999999999999999999988777678888888888999988889999999999888776 67788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------YTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
+++||.+.+.++..+..|+++....... .+| |+||+|.|+-- +.....+++.+++.++.. .+++|+..+
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~s 171 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSHS 171 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecccc
Confidence 9999999999999999999998876543 356 56899998632 112256677788888877 999999999
Q ss_pred -ChHHHHHHHHHHHhCCCCCCCC
Q 005908 576 -DLNNVFSRIIWAAEHPHLNIPE 597 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~~~~~~ 597 (670)
||.++|.-+...+.+....+|+
T Consensus 172 INv~KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred ccHHHHHHHHHHHHhCCceeccc
Confidence 9999999998888766655554
No 385
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.6e-16 Score=137.02 Aligned_cols=167 Identities=15% Similarity=0.154 Sum_probs=121.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCC---CCC----CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPE----KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (670)
.+..+.|+|+|..|+|||||+.++-... +.. ...++.+- ....+...+..+.+||.+|++...++|..+|.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence 4567899999999999999999885332 111 11121211 12233344778999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcc
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSAT 159 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~ 159 (670)
.+|++|+++|+++++.|+.....+-+.+.. ...+.|+++.+||.|+.+.-.+..++..... +...+ ...++.+|||.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSAL 170 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhh
Confidence 999999999999999998887655555533 3458999999999999875433112222221 22222 23479999999
Q ss_pred cCCCchHHHHHHHHHHcCC
Q 005908 160 TMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~ 178 (670)
+|+||++-.+++.+.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999988765
No 386
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=2.6e-15 Score=167.36 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=103.7
Q ss_pred cCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh------hHHHh--ccCCEEEEE
Q 005908 19 GDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVVLT 89 (670)
Q Consensus 19 G~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~ii~v 89 (670)
|+||||||||+|+|++.++ ..+.|++... .....+..++.++.+|||||+.++... ...++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~-~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVE-KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEE-EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999998875 3335543222 122334445677999999999876543 23333 478999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
+|.++.+.. . ++...+.+. ++|+++|+||+|+.+.... . ...+.+.+.++ .+++++||++|.|++++++
T Consensus 80 vDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg--~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 80 VDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLG--VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred ecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence 999875421 1 244444444 7999999999998765443 2 23466677776 3799999999999999999
Q ss_pred HHHHHH
Q 005908 170 YAQKAV 175 (670)
Q Consensus 170 ~i~~~~ 175 (670)
.+.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 387
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.7e-15 Score=151.62 Aligned_cols=215 Identities=22% Similarity=0.207 Sum_probs=137.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCcc-chhh--------
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE-NKGK-------- 75 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~-------- 75 (670)
.+..++|+|+|+||||||||+|.|.+... +...|+ +|+ +...++.+++++.+.||+|..+ ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHH
Confidence 45679999999999999999999999884 343444 444 6777888999999999999875 2111
Q ss_pred hHHHhccCCEEEEEEEC--CChhhHHHHHHHHHHHHHhc-------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-
Q 005908 76 LNEELKRADAVVLTYAC--NQQSTLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ- 145 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~--~~~~s~~~~~~~~~~~l~~~-------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~- 145 (670)
....++.||++++|+|+ ++.++...+.+ .+...... ....|++++.||+|+...-....... ......
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~ 419 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAE 419 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccc
Confidence 22668899999999998 44444444332 33333221 12589999999999987522101100 001111
Q ss_pred HhccCCeEEEeCcccCCCchHHHHHHHHHHcC----CCCCCC--cccc-ccccHHHHH-HHHHHHHHhCCCCCCCCChHH
Q 005908 146 QFREIETCVECSATTMIQVPDVFYYAQKAVLH----PTAPLF--DHDE-QTLKPRCVR-ALKRIFIICDHDMDGALNDAE 217 (670)
Q Consensus 146 ~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~----~~~~~~--~~~~-~~~~~~~~~-~l~ri~~~~d~~~~~~l~~~e 217 (670)
..+......++|+++++|+++|.+.+.+.+.. +..+.+ ...+ +.....+.. .+.+.+...+...|..+..++
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~ 499 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEP 499 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccch
Confidence 11122246679999999999999988887632 222222 1111 122222332 567777666666777888888
Q ss_pred HHHHhhhhcCC
Q 005908 218 LNEFQVKCFNA 228 (670)
Q Consensus 218 l~~~q~~~~~~ 228 (670)
++..+...-..
T Consensus 500 lR~a~~~i~r~ 510 (531)
T KOG1191|consen 500 LRLAQRSIARI 510 (531)
T ss_pred HHHHHhhhccc
Confidence 87777654433
No 388
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=4.2e-15 Score=165.71 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=106.9
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc----hHhh--cccccEEEE
Q 005908 430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEA--LASCDVTIF 503 (670)
Q Consensus 430 G~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~----~~~~--~~~ad~vll 503 (670)
|+||||||||+|++++......+.++++.+.....+..+| ..+.+||++|+..+..... ...+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876444445555445445555553 3567899999866543200 2222 247999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHH
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
|+|+++.+ ....+..++.+. ++|+++|+||+|+.+++....+.+.+++.++.+ ++++||++| |++++++
T Consensus 79 VvDat~le---r~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIERLKD 148 (591)
T ss_pred EecCCcch---hhHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHHHHHH
Confidence 99998743 223333444332 699999999999976555555678888888875 999999999 9999999
Q ss_pred HHHHHH
Q 005908 583 RIIWAA 588 (670)
Q Consensus 583 ~l~~~~ 588 (670)
.+.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998864
No 389
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=8e-15 Score=140.81 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=100.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--------CC---CCCC---CCCCeE--eCCcccCCceeEEEEeCCCCccchh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV--------PE---KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG 74 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--------~~---~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (670)
+.++|+++|+.++|||||+++|++... .. +... ..+.+. ....+..++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 358999999999999999999986410 00 0000 001111 2233445678899999999988877
Q ss_pred hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhcc---
Q 005908 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE--- 149 (670)
Q Consensus 75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~--- 149 (670)
.....+..+|++++|+|++....-.. ..++..+... ++| +|+|.||+|+...... ....+.+..+...++.
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 78888999999999999876533222 2355566665 676 7899999998643221 0122234444444432
Q ss_pred CCeEEEeCcccCCCch
Q 005908 150 IETCVECSATTMIQVP 165 (670)
Q Consensus 150 ~~~~~~~SA~~~~gi~ 165 (670)
..+++++||++|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 2479999999999864
No 390
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.61 E-value=1.1e-14 Score=163.24 Aligned_cols=159 Identities=15% Similarity=0.204 Sum_probs=110.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc--cceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~--~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
....++|+|+|.+|+|||||+++|.+..+.....++++ .......+...+....+.+||++|++.|..+ +..++..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m--r~rg~~~ 318 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM--RSRGANV 318 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH--HHHHHHH
Confidence 34668999999999999999999998877654333222 2222222333334578889999999999887 6778899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH------HHHhC-CCCcEEe
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV------TQELG-IEPPIPV 570 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~------~~~~~-~~~~~~v 570 (670)
+|++|+|+|++++...+.... +..+... ++|+|+|+||+|+..... ....+++ ...++ ..+++++
T Consensus 319 aDiaILVVDA~dGv~~QT~E~-I~~~k~~------~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTIEA-INYIQAA------NVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred CCEEEEEEECcCCCChhhHHH-HHHHHhc------CceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEE
Confidence 999999999998644332222 2233222 699999999999976321 1111111 22223 2469999
Q ss_pred ecccC-ChHHHHHHHHHHH
Q 005908 571 SMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~ 588 (670)
||++| |++++++.+....
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 99999 9999999998765
No 391
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=6.7e-15 Score=138.48 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccc----------hhhhHHHhc--
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEELK-- 81 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~-- 81 (670)
.|+++|++|+|||||+|++++..+.....+..+.+.....+... ..+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999766544433333332211112222 28999999996432 223334444
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 82 -~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
..+++++++|.++..+.... .....+... +.|+++|+||+|+.................+......+++++||++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 35789999998766433322 244555555 6899999999998643222011122222222112224789999999
Q ss_pred CCCchHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKA 174 (670)
Q Consensus 161 ~~gi~~l~~~i~~~ 174 (670)
+.|+.++++.+.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988764
No 392
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=3.9e-15 Score=145.36 Aligned_cols=151 Identities=18% Similarity=0.051 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC--C------------------C----CC-----CCCeE--eCCcccCCceeEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEK--V------------------P----PV-----HAPTR--LPPDFYPDRVPVT 62 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~--~------------------~----~~-----~~~~~--~~~~~~~~~~~~~ 62 (670)
+|+|+|++|+|||||+++|+...-... . . .. .+.+. ....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999976431111 0 0 00 00111 1223445677899
Q ss_pred EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--cchhhhh
Q 005908 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM 140 (670)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~ 140 (670)
+|||||+.++...+...++.+|++|+|+|+++...-... .....++.. ...++|+|+||+|+...... ......+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988776677788999999999999875322221 133334443 12457889999998753211 0112233
Q ss_pred hHHHHHhcc-CCeEEEeCcccCCCchHH
Q 005908 141 GPIMQQFRE-IETCVECSATTMIQVPDV 167 (670)
Q Consensus 141 ~~~~~~~~~-~~~~~~~SA~~~~gi~~l 167 (670)
..+.+.++. ..+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 444455542 135899999999999853
No 393
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.61 E-value=5.4e-17 Score=145.13 Aligned_cols=170 Identities=16% Similarity=0.287 Sum_probs=145.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-eEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+-+|+.|+|.-+|||||++.+++...|...+..|++.++..++..++... .++.+||.+|++++..+ +.-+++.++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--trVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--TRVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--EEEEecCCc
Confidence 455899999999999999999999999999888999999988887777433 35668999999999988 888999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhCCCCcEEeecccC-
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+.++|||+++..+|+....|.+++..... ..+...|+|+..||||..+.... .....++++++++...+++|||.+
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998864432 33346889999999999874433 477888999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 005908 576 DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~~ 592 (670)
|++|+.+.+++.+....
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999875433
No 394
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=132.73 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=109.4
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhh
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGK 75 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~ 75 (670)
..+.....-|+++|++|||||||||+|++.+-....+.+.+.|.....+...+ .+.++|.||... ...+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 33445667899999999999999999999762222233333555333344333 289999999652 2233
Q ss_pred hHHHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC-
Q 005908 76 LNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE- 151 (670)
Q Consensus 76 ~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 151 (670)
+..|++. -.++++++|+..+....+. ..++++... ++|+++|+||+|....... ...+...++.+....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCC
Confidence 4456644 3678889997766554443 488888887 8999999999999875432 122233333332111
Q ss_pred ---eEEEeCcccCCCchHHHHHHHHHHc
Q 005908 152 ---TCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 152 ---~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.++..|+.++.|++++...|...+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhh
Confidence 2788999999999999988876653
No 395
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-14 Score=140.34 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=115.3
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccch-----------
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENK----------- 73 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 73 (670)
.....+-+.|+++|.||||||||.|.+++.+.......+.+++ .+...+..+...+.++||||.-.-.
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 3445678999999999999999999999998655422222222 2555666778899999999965211
Q ss_pred -hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhH
Q 005908 74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGP 142 (670)
Q Consensus 74 -~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~ 142 (670)
+....++..||++++|+|+++.-..-+- ..+..++.+ .++|-++|.||+|....... ........+
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1123678889999999999874333222 255566554 38999999999998754211 000111112
Q ss_pred HHHHhc---------------cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 143 IMQQFR---------------EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 143 ~~~~~~---------------~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+..++. .+..+|.+||++|+||+++-+++...+.+.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 222221 133589999999999999999999886543
No 396
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=1.7e-14 Score=163.43 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=109.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
...++.|+|+|..|+|||||+++|.+..+.....+.++.......+.+++ ..+.+||++|++.|..+ +...+..+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m--~~rga~~aD 362 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAM--RARGAQVTD 362 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhH--HHhhhhhCC
Confidence 45678999999999999999999998776654433333333334455553 56788999999998887 667889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHH---HHHHHhC-CCCcEEeecc
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSA---RVTQELG-IEPPIPVSMK 573 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~---~~~~~~~-~~~~~~vSA~ 573 (670)
++|+|+|++++..-+... .+..+... ++|+|+++||+|+...... ..+.. .++..++ ..+++++||+
T Consensus 363 iaILVVdAddGv~~qT~e-~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIE-AINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEEEECCCCCCHhHHH-HHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 999999999864322222 22333222 7999999999999653211 11111 1122233 2369999999
Q ss_pred cC-ChHHHHHHHHHH
Q 005908 574 SK-DLNNVFSRIIWA 587 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~ 587 (670)
+| |++++++.|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 99 999999999764
No 397
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.59 E-value=8e-15 Score=159.03 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=103.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--------------------------------CCCCCCCeEeCCccc
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------------VPPVHAPTRLPPDFY 55 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 55 (670)
..++.++|+++|++++|||||+++|+...-... .+++. .......+.
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T-~d~~~~~~~ 80 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVT-IDLAHKKFE 80 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcc-ceeeeEEEe
Confidence 456789999999999999999999985431110 11111 011223355
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-- 133 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-- 133 (670)
.+++.+.+|||||++++...+...++.+|++|+|+|+++..+.......++..++... ..|+++|+||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHH
Confidence 6788999999999988876666778899999999999873222221112333444442 3469999999999753211
Q ss_pred cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHH
Q 005908 134 TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (670)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~ 168 (670)
....+.+..+...++. ..+++++||++|.|++++.
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0112334444444442 1369999999999998754
No 398
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=1.7e-14 Score=160.85 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCC-----CC---------CCC-CCeEeCCcc---cCCceeEEEEeCCCCccc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES--VPEK-----VP---------PVH-APTRLPPDF---YPDRVPVTIIDTSSSLEN 72 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~--~~~~-----~~---------~~~-~~~~~~~~~---~~~~~~~~i~Dt~G~~~~ 72 (670)
-+|+|+|+.++|||||+.+|+... +... .. +.. ........+ +..++.+++|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 479999999999999999998642 1110 00 000 000011111 334688999999999999
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-C
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-E 151 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (670)
...+..+++.+|++|+|+|+++......... |.... .. ++|+++|+||+|+.... .......+...++.. .
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-EN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-HC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCCcc
Confidence 9889999999999999999998766555442 44332 23 78999999999986432 222233444444321 2
Q ss_pred eEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 152 TCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
.++++||++|.||+++++.+.+.+..+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 4899999999999999999998876553
No 399
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=4.5e-14 Score=135.64 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=96.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~~-----~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~ 488 (670)
.++|+++|.+++|||||+++|++. .....+. + ..+.......+....+...+.++|++|...+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 378999999999999999999864 1100000 0 1111122222223324557788999998776654
Q ss_pred hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHHHhC
Q 005908 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQELG 563 (670)
Q Consensus 489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~~~~ 563 (670)
....+..+|++++|+|++.+.. ......+..+... ++| +|+++||+|+...... .+++.++.+.++
T Consensus 82 --~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 82 --MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred --HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5777889999999999988644 3344444555444 576 7789999999743322 334555666666
Q ss_pred C----CCcEEeecccC-Ch
Q 005908 564 I----EPPIPVSMKSK-DL 577 (670)
Q Consensus 564 ~----~~~~~vSA~~g-~v 577 (670)
+ .|++++||++| |+
T Consensus 153 ~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 153 FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ccccCCeEEEeeCccccCC
Confidence 5 46999999999 85
No 400
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.1e-14 Score=155.04 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hhHhhhhchHhhc-
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EGVKKILSNKEAL- 495 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~~~~~~~~~~~~- 495 (670)
..+|+++|.||||||||+|+++|.+-.....|.++.+...-.+...|+ .+.++|.+|. ..-+.+ +++++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~V--ar~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKV--ARDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHH--HHHHHh
Confidence 357999999999999999999998766555555544444333333322 2444555552 222334 44444
Q ss_pred -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.+.|+++-|+|+++-+ .-.....++.+. +.|++++.|++|..+++....+.+++.+.+|.+ ++++||++
T Consensus 79 ~~~~D~ivnVvDAtnLe---RnLyltlQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA~~ 148 (653)
T COG0370 79 EGKPDLIVNVVDATNLE---RNLYLTLQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVAKR 148 (653)
T ss_pred cCCCCEEEEEcccchHH---HHHHHHHHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEeec
Confidence 4679999999999853 233334445554 799999999999999888888899999999988 99999999
Q ss_pred C-ChHHHHHHHHHHHhCCCC
Q 005908 575 K-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~~~ 593 (670)
| |++++.+.+.+.......
T Consensus 149 g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 149 GEGLEELKRAIIELAESKTT 168 (653)
T ss_pred CCCHHHHHHHHHHhcccccc
Confidence 9 999999999998765443
No 401
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.1e-14 Score=150.14 Aligned_cols=194 Identities=18% Similarity=0.124 Sum_probs=126.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhh-------Hhhhhc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILS 490 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~ 490 (670)
.+.+++|+|+|+||||||||+|+|.+.++.++++ +||++.+. ..++++| ..+.+.||+|-.+ ...+.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaie-a~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIE-AQVTVNG--VPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhe-eEeecCC--eEEEEEeccccccccCChhHHHhHHH
Confidence 3456999999999999999999999999999987 56666554 3455553 4566689988432 223556
Q ss_pred hHhhcccccEEEEEEEC--CCcccHHHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHh--
Q 005908 491 NKEALASCDVTIFVYDS--SDEYSWKRTKELLVEVARLGE---DSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQEL-- 562 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~--s~~~s~~~~~~~~~~i~~~~~---~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~-- 562 (670)
....++.+|++++|+|+ ++-++-..+.+.+.....-.. ......|++++.||+|+... .........+....
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR 421 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence 78889999999999999 443333333344443322111 01124789999999999874 11111111111111
Q ss_pred -CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhh
Q 005908 563 -GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLV 616 (670)
Q Consensus 563 -~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (670)
.++...++|++++ |++.|...+.+.+......+........+.++.+.++....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~ 477 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAA 477 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhh
Confidence 2234566999999 99999999999876554443333334445566666655443
No 402
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.8e-14 Score=155.66 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=120.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHh--c
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEEL--K 81 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~--~ 81 (670)
+..+|+++|+||||||||+|+|++.+ .+.++|+++ ..++...+...+.+++++|.||..... .....++ .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45679999999999999999999987 677788844 333566777778889999999975432 2333444 3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
.+|+++-|+|+++.+.-- ++.-++.+. ++|++++.|++|......+ .. ..+.+.+.+| .|++++||++|
T Consensus 81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~I--D~~~L~~~LG--vPVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKKRGI-RI--DIEKLSKLLG--VPVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHhcCC-cc--cHHHHHHHhC--CCEEEEEeecC
Confidence 569999999998865322 244445555 8999999999999877665 32 2467778887 48999999999
Q ss_pred CCchHHHHHHHHHHcCCCC
Q 005908 162 IQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~ 180 (670)
.|++++.+.+.+....+..
T Consensus 150 ~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 150 EGLEELKRAIIELAESKTT 168 (653)
T ss_pred CCHHHHHHHHHHhcccccc
Confidence 9999999999887655543
No 403
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=2.8e-14 Score=132.63 Aligned_cols=152 Identities=25% Similarity=0.240 Sum_probs=101.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHhhcccccEE
Q 005908 428 LFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCDVT 501 (670)
Q Consensus 428 ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ad~v 501 (670)
|+|++|+|||||+|++++....... .+++............ ....+.+||++|....... ......+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987665322 2222222333333333 2456778999996443321 1144577899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH---HHHHHHhCCCCcEEeecccC-Ch
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|+|+++..+..... +....... +.|+++|+||+|+.......... ..........+++++||+++ |+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 9999999987755544 33333332 69999999999998744332221 11222233347999999999 99
Q ss_pred HHHHHHHHHH
Q 005908 578 NNVFSRIIWA 587 (670)
Q Consensus 578 ~~l~~~l~~~ 587 (670)
+++++.+.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 404
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.58 E-value=1.6e-14 Score=143.77 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=70.7
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (670)
+++..+.+.+++++|++++|||++++. +++.+. +|+..+... ++|++||+||+||.+...+ ..+..+.+. +.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence 456677778999999999999999887 888887 588777654 8999999999999754433 223333333 343
Q ss_pred cCCeEEEeCcccCCCchHHHH
Q 005908 149 EIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 149 ~~~~~~~~SA~~~~gi~~l~~ 169 (670)
.+++++||++|.||+++|+
T Consensus 98 --~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 98 --YQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred --CeEEEEecCCchhHHHHHh
Confidence 3799999999999998876
No 405
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=124.08 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=121.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+++||.++|-.|+|||||+..|.+.....-.|+ .+-..+.+.+ .+.+.+++||.+|+...+..|..|+.+.|++|
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 447899999999999999999999988765444443 3333333333 45689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc------cCCeEEEeCccc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATT 160 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~ 160 (670)
+|+|.+|..-|+++.+++.+.+.. .....|+++..||.|+.....+ +.++.+.. ...++-+|||.+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-------eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-------EEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-------HHHHHhcchhhhhhceEEeeeCcccc
Confidence 999999999999988877777754 2347999999999998765433 11111111 112688999999
Q ss_pred CCCchHHHHHHHHH
Q 005908 161 MIQVPDVFYYAQKA 174 (670)
Q Consensus 161 ~~gi~~l~~~i~~~ 174 (670)
++|+.+-.++++..
T Consensus 164 ~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 164 LEGSTDGSDWVQSN 177 (185)
T ss_pred ccCccCcchhhhcC
Confidence 99999988887764
No 406
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=8e-14 Score=126.14 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=120.6
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-------CCCCCCCeEeCCccc----CCceeEEEEeCCCCccchh
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------VPPVHAPTRLPPDFY----PDRVPVTIIDTSSSLENKG 74 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~ 74 (670)
........||+|.|+-++||||++.++........ .......++...++. .++..+.++|||||++|.-
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 34456789999999999999999999987763111 111111233322322 3457899999999999999
Q ss_pred hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV 154 (670)
Q Consensus 75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (670)
+|+.+.+++.++|+++|.+.+..++. . .+++.+....+ +|+++++||.|+.+.... +.+.++.+.-..-.+.+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~~-ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi 156 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRNP-IPVVVAINKQDLFDALPP----EKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhccC-CCEEEEeeccccCCCCCH----HHHHHHHHhccCCCcee
Confidence 99999999999999999999988833 3 47888877633 999999999999987544 33334333331124799
Q ss_pred EeCcccCCCchHHHHHHHHH
Q 005908 155 ECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~ 174 (670)
+++|.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999887766
No 407
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=1.8e-14 Score=141.41 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------CCCC------CCeE--eCCcc-----cCCceeEEEEeCCCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVH------APTR--LPPDF-----YPDRVPVTIIDTSSS 69 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~-----------~~~~------~~~~--~~~~~-----~~~~~~~~i~Dt~G~ 69 (670)
+|+|+|+.|+|||||+++|+........ .... +.+. ....+ ....+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999976543221 0000 0000 00011 234688999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC-------ccchh---hh
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-------ATSLE---EV 139 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-------~~~~~---~~ 139 (670)
.++......++..+|++++|+|+++..+.... .++...... ++|+++|+||+|+..... ..... +.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 99988888999999999999999887665442 355555544 699999999999862110 00111 22
Q ss_pred hhHHHHHhcc---------CCeEEEeCcccCCCch
Q 005908 140 MGPIMQQFRE---------IETCVECSATTMIQVP 165 (670)
Q Consensus 140 ~~~~~~~~~~---------~~~~~~~SA~~~~gi~ 165 (670)
+..++..++. -..+++.||+.+.++.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 2333333321 0137789999998876
No 408
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=9.9e-15 Score=129.61 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=124.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCC---CC--CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPF---SE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~---~~--~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~ 495 (670)
+..+.|+|+|..|+|||||+.++-.... .. .+.-+++....+-.+++. ...+.+||-.|++..+++ +..+|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSl--w~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSL--WKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHH--HHHHH
Confidence 4568899999999999999998764321 11 111244444555666665 456778999999999999 99999
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH---HHHhCCC--CcEEe
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQELGIE--PPIPV 570 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~v 570 (670)
..|+++|+++|+++++.|+.....++.+....... +.|+++.+||-|+.+... ..++... +...+-+ ++.+|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le--g~p~L~lankqd~q~~~~-~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE--GAPVLVLANKQDLQNAME-AAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc--CCchhhhcchhhhhhhhh-HHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999998888877776654444 899999999999987332 2222222 2333322 68999
Q ss_pred ecccC-ChHHHHHHHHHHHhCC
Q 005908 571 SMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~~~ 591 (670)
||.+| ||++-.+++.+.+...
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 99999 9999999999998765
No 409
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=9e-15 Score=125.31 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
++.+|.++|-.|+||||+..++--.+.+.+.|+..... ..+..++.++++||.+|+......|+.|+.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnv---e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNV---ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCc---cccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 78999999999999999999998888777766644332 234457899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCc--cchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|.+|+....-....++..+++. -.+..+++++||.|....-.. ....-.+..+.++. ..+|++||.+|+|+++.
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGEGLDPA 170 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhe---eEEEeeccccccCCcHH
Confidence 9999876665555577777542 236778899999997654211 01111222232222 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
++++.+.+.
T Consensus 171 ~DWL~~~l~ 179 (182)
T KOG0072|consen 171 MDWLQRPLK 179 (182)
T ss_pred HHHHHHHHh
Confidence 999998764
No 410
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.57 E-value=6.7e-14 Score=138.63 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCCcccceEEEEEEcCCCceEEEEEecCChhhHh----h-hhchHhhcccc
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----K-ILSNKEALASC 498 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----~-~~~~~~~~~~a 498 (670)
+|+++|.+|||||||+|+|.+...... +..|+. ......+... ...+.+||++|..+.. . ..+....++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~-~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTL-TCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccc-cceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 789999999999999999998764322 222332 2223334444 2467789999963322 1 11135678999
Q ss_pred cEEEEEEECCCccc-HHHHHHHHHH----------------------------------------HH-Hh----------
Q 005908 499 DVTIFVYDSSDEYS-WKRTKELLVE----------------------------------------VA-RL---------- 526 (670)
Q Consensus 499 d~vllv~D~s~~~s-~~~~~~~~~~----------------------------------------i~-~~---------- 526 (670)
|++++|+|++++.. .+.+.+.+.. +. ++
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999987642 2222222210 00 00
Q ss_pred -----------cCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 527 -----------GEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 527 -----------~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
......-+|+++|+||+|+.. .++.+.+++. ++++++||++| |++++++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 001011369999999999975 3344444432 35899999999 99999999998764
No 411
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=2.6e-14 Score=140.32 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC------------CCCeE------eC--------------------Cccc
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPV------------HAPTR------LP--------------------PDFY 55 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~------------~~~~~------~~--------------------~~~~ 55 (670)
||+++|+.++|||||+++|..+.|....... .+.+. +. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976653321100 00000 00 0011
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 133 (670)
..+..+.++||||++++.......+. .+|++++|+|++....-.. ..++..+... ++|+++|.||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~- 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANI- 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHH-
Confidence 23567999999999888666555554 6899999999876644333 2467777766 789999999999865422
Q ss_pred cchhhhhhHHHHHh---------------------------ccCCeEEEeCcccCCCchHHHHHHH
Q 005908 134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQ 172 (670)
Q Consensus 134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~SA~~~~gi~~l~~~i~ 172 (670)
.......+.+.+ +...++|.+||.+|+|++++...+.
T Consensus 156 --~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 --LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred --HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222233332222 2234899999999999999887664
No 412
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.57 E-value=4.2e-14 Score=156.34 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------------CceEEEEEecCChhhHh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------------GNKKTLILQEIPEEGVK 486 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g----------------~~~~~~i~d~~g~~~~~ 486 (670)
.+-|+|+|++|+|||||+|+|.+..+.....++++.......+..+. ....+.+||++|++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 35799999999999999999999877554333222211111121110 01137789999999998
Q ss_pred hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-------------cHH
Q 005908 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQ 553 (670)
Q Consensus 487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~ 553 (670)
.+ +..+++.+|++++|+|++++.+.+... .+..+... +.|+++++||+|+.+.-. ...
T Consensus 84 ~l--~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 84 NL--RKRGGALADLAILIVDINEGFKPQTQE-ALNILRMY------KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HH--HHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHHc------CCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 87 677889999999999999853322221 22222222 689999999999974110 000
Q ss_pred ----H--------HHHHHH------------Hh-CCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 554 ----D--------SARVTQ------------EL-GIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 554 ----~--------~~~~~~------------~~-~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
. ..++.+ .+ +..+++++||++| |+++|++.+...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0 011111 11 1236999999999 999999988653
No 413
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.57 E-value=1.2e-14 Score=157.71 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------------------CCCCCCCeEeCCcccC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP 56 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~ 56 (670)
.++.++|+++|+.++|||||+++|+... +... ..++. .......+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~T-id~~~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVT-IDVAHWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCce-EEEEEEEEcc
Confidence 5677999999999999999999998632 2110 00100 0011233456
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHH-HHHHHHhcCCCCCEEEEEeCCCCCCCCCc--
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY-WLPELRRLEIKVPIIVAGCKLDLRGDHNA-- 133 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~-~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-- 133 (670)
+++.+.||||||+++|.......+..+|++++|+|+++.+++...... +....+.. ...|+++|+||+|+.+....
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence 678999999999988877666778999999999999987543221111 22223333 24579999999999743221
Q ss_pred cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHHH
Q 005908 134 TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~~ 169 (670)
....+.+..+.+..+. ..+++++||++|.||.+++.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 0112334455555541 24799999999999987553
No 414
>PRK10218 GTP-binding protein; Provisional
Probab=99.57 E-value=4e-14 Score=157.04 Aligned_cols=163 Identities=13% Similarity=0.118 Sum_probs=112.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCC------------CCCCCeE--eCCcccCCceeEEEEeCCCCccchhh
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVP------------PVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK 75 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (670)
--+|+|+|+.++|||||+++|+.. .|..... ...+.+. ....+.++++++++|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 457999999999999999999973 3332211 0011111 22344567899999999999999999
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----C
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----I 150 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~ 150 (670)
+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...+.. ...+.+..+...++. -
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARPD-WVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCchh-HHHHHHHHHHhccCccccccC
Confidence 99999999999999999876433332 244455544 7899999999998764332 111222222211111 1
Q ss_pred CeEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 005908 151 ETCVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 151 ~~~~~~SA~~~~----------gi~~l~~~i~~~~~~~~ 179 (670)
.+++.+||++|. |+..+++.+...+..|.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 368999999998 58889998888876553
No 415
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.56 E-value=8.4e-14 Score=155.39 Aligned_cols=160 Identities=15% Similarity=0.207 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------C-C-----CCcccceEEEE--EEc---CCCceEEEEEecCChhh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSEN-------Y-A-----PTTGEQYAVNV--VDQ---PGGNKKTLILQEIPEEG 484 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------~-~-----~t~~~~~~~~~--vd~---~g~~~~~~i~d~~g~~~ 484 (670)
.-+|+|+|..++|||||+.+|+...-... . + .+.+..+.... +.+ +|....+.+|||+|+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 35899999999999999999986321110 0 0 01111122111 111 44567888999999988
Q ss_pred HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564 (670)
Q Consensus 485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 564 (670)
+... +..+++.+|++|+|+|++++...+....|.... .. ++|+++|+||+|+.... .....+++.+.+++
T Consensus 87 F~~~--v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSYE--VSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGI 156 (600)
T ss_pred HHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCC
Confidence 8776 678899999999999999987766665554432 22 68999999999986532 23334556666665
Q ss_pred C--CcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 565 E--PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 565 ~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
. .++++||++| |+++++++|.+.+..|.
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 4 4899999999 99999999999887654
No 416
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=3.7e-14 Score=157.62 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCC------------CCCCe--EeCCcccCCceeEEEEeCCCCccchhhhH
Q 005908 14 RVVVVGDRGTGKSSLIAAAATE--SVPEKVPP------------VHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (670)
+|+|+|+.++|||||+++|+.. .+...... ..+.+ .....+.++++++++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999863 23221100 00011 12233556789999999999999998899
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-----CCe
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IET 152 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 152 (670)
.+++.+|++++|+|+++...- ... .|+..+... ++|+|+|+||+|+.+.+.. ...+.+..+...++. ..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~-qT~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMP-QTR-FVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcH-HHH-HHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccCc
Confidence 999999999999999864322 222 366666665 7899999999998754322 112222333322211 136
Q ss_pred EEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 005908 153 CVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 153 ~~~~SA~~~~----------gi~~l~~~i~~~~~~~~ 179 (670)
++.+||++|. |+..+|+.+.+.+..+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 8999999996 79999999998887653
No 417
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=1.3e-13 Score=129.63 Aligned_cols=151 Identities=20% Similarity=0.159 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh----------hhHhhhhchHhh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKILSNKEA 494 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~----------~~~~~~~~~~~~ 494 (670)
.|+++|.+|||||||+|.+.+..+.....++.+.......+..++ .+.++|++|. +.+... ...+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~--~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKL--IEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHH--HHHH
Confidence 489999999999999999997666555555544444444555442 6677888883 222222 2223
Q ss_pred c---ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHH---HH-HhCCCCc
Q 005908 495 L---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQ-ELGIEPP 567 (670)
Q Consensus 495 ~---~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~-~~~~~~~ 567 (670)
+ ..++++++++|.++..+... ......+... +.|+++|+||+|+............+ .+ ....+++
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI 148 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence 3 45688999999987643222 2223333332 58999999999996543332222222 22 2334579
Q ss_pred EEeecccC-ChHHHHHHHHHH
Q 005908 568 IPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~l~~~ 587 (670)
+++||+++ |+.++++.|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 99999999 999999999875
No 418
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.56 E-value=4.1e-14 Score=138.18 Aligned_cols=146 Identities=22% Similarity=0.231 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcCCCceE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPGGNKK 473 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~g~~~~ 473 (670)
+|+|+|.+|+|||||+++|+......... ..++.+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 58999999999999999998654433210 001111122233333 346
Q ss_pred EEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---
Q 005908 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--- 550 (670)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--- 550 (670)
+.++|++|++.+... ....++.+|++++|+|++++.. .........+... . ..++|+|+||+|+.....
T Consensus 79 ~~liDTpG~~~~~~~--~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~-~----~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 79 FIIADTPGHEQYTRN--MVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL-G----IRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred EEEEECCcHHHHHHH--HHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc-C----CCcEEEEEEchhcccCCHHHH
Confidence 778999999877554 4567899999999999998743 2222222222222 1 245788999999975321
Q ss_pred --cHHHHHHHHHHhCCC--CcEEeecccC-ChHHH
Q 005908 551 --AVQDSARVTQELGIE--PPIPVSMKSK-DLNNV 580 (670)
Q Consensus 551 --~~~~~~~~~~~~~~~--~~~~vSA~~g-~v~~l 580 (670)
...+.+++.+.+++. +++++||++| |+.+.
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 134455666677753 4899999999 98754
No 419
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.56 E-value=2.7e-14 Score=153.35 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=104.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CC----------------------eEeCCccc------CCcee
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-AP----------------------TRLPPDFY------PDRVP 60 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~----------------------~~~~~~~~------~~~~~ 60 (670)
++.++|+++|.+++|||||+++|.+........... +. ++.....+ .....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 578999999999999999999997542111000000 00 00000000 12467
Q ss_pred EEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh
Q 005908 61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM 140 (670)
Q Consensus 61 ~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~ 140 (670)
+.+|||||+++|...+...+..+|++++|+|+++........+ .+..+.... ..|+++|+||+|+.+........+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999988888888889999999999986431111111 223333331 35799999999997542210011222
Q ss_pred hHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 141 GPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 141 ~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
..+.... ....+++++||++|.|++++++.+...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2222221 11247999999999999999999987654
No 420
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=4.7e-14 Score=157.65 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCC-CCCCCCeEeCCcc-cCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATES---VPEKV-PPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~---~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
+-|+++|+.++|||||+++|++.. +.+.. .++.-... ...+ ..++..+.+|||||+++|...+...+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~-~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLG-YAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEee-eEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 358999999999999999998743 22221 11110000 0111 124567899999999988877788899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhc-cCCeEEEeCcccCCCch
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVP 165 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gi~ 165 (670)
+|+|+++...-... ..+..++.. ++| +++|+||+|+.+........+.+..+....+ ...+++++||++|.|++
T Consensus 80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 99998874222221 133444444 456 5799999999754322011223333333332 12479999999999999
Q ss_pred HHHHHHHHHH
Q 005908 166 DVFYYAQKAV 175 (670)
Q Consensus 166 ~l~~~i~~~~ 175 (670)
++++.+....
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 421
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-16 Score=140.27 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=131.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
.-+|+.|+|+-||||||++.+++...|...+..+.+..+ .....+. .-+++.+||..|++++..+...+++.|++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 357999999999999999999999888777554444433 1112222 2467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
+|||+++..+|+... +|.+.+... +...|+|+..||||....... .....+..+.++.+ +..++++|+|.+.
T Consensus 104 iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~keng-f~gwtets~Kenk 180 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENG-FEGWTETSAKENK 180 (229)
T ss_pred EEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccC-ccceeeecccccc
Confidence 999999999999998 599888553 235788999999998765333 22345566666665 4579999999999
Q ss_pred CchHHHHHHHHHHcCCC
Q 005908 163 QVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~~ 179 (670)
||+|....+++.++-+.
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999887555
No 422
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.55 E-value=8.1e-14 Score=154.89 Aligned_cols=157 Identities=24% Similarity=0.270 Sum_probs=102.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC----CCeEeCCccc----CCc-----e-----eEEEEeCCCCcc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY----PDR-----V-----PVTIIDTSSSLE 71 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~----~~~~~~~~~~----~~~-----~-----~~~i~Dt~G~~~ 71 (670)
.+...|+|+|++|+|||||+++|.+..+....++.. +.+..+.... ... . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 355679999999999999999998776554444311 1111111100 000 1 278999999999
Q ss_pred chhhhHHHhccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc---------------
Q 005908 72 NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------------- 133 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------------- 133 (670)
|..++...++.+|++++|+|+++ +++++.+ ..++.. ++|+++++||+|+......
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888999999999999987 4555443 334444 7999999999998521000
Q ss_pred ---cchhhhhhHH---HH-------------HhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908 134 ---TSLEEVMGPI---MQ-------------QFREIETCVECSATTMIQVPDVFYYAQK 173 (670)
Q Consensus 134 ---~~~~~~~~~~---~~-------------~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 173 (670)
...++....+ .. .++...+++++||++|.|++++++.+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000001111 11 1223347999999999999999987753
No 423
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.54 E-value=5.5e-14 Score=150.78 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=104.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCCCCCeE---eCC----------cc------c------CC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTR---LPP----------DF------Y------PD 57 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~----~~~~~~~~~---~~~----------~~------~------~~ 57 (670)
...++.++|+++|+.++|||||+.+|.+...... ..+..-... ... .+ . ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3567889999999999999999999965321110 011000000 000 00 0 01
Q ss_pred ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (670)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 136 (670)
...+.+|||||+++|.......+..+|++++|+|++++. ..+... .+..++... ..|+++|+||+|+.+.......
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHHHH
Confidence 367999999999887666666667789999999998643 222111 222333331 3479999999999764322011
Q ss_pred hhhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 137 EEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
.+.+..+.+.. ....+++++||++|.|++++++.+...+..
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 12223333221 112479999999999999999998876543
No 424
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=9.9e-14 Score=134.71 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc-cEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF 503 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a-d~vll 503 (670)
+|+++|++|||||||+++|.++.+.....++ ...........++....+.+||++|+.+++.. ...+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~--~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK--LLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH--HHHHHhccCCEEEE
Confidence 6899999999999999999998776554332 22232222222234567889999999988776 67788888 99999
Q ss_pred EEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 504 VYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 504 v~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
|+|+++. .++.....++..+.........++|+++|+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999987 67777777766554322111116999999999998763
No 425
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.54 E-value=1e-13 Score=134.07 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=100.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCC--CCeEeCCccc-CCceeEEEEeCCCCccchhhhHH-----Hhcc
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR 82 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 82 (670)
++||+++|++|||||||+|+|++..+... ..++. ..+.....+. .....+.+|||||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 47999999999999999999998664332 11111 1111111111 12346899999998653332222 3677
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhc----
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFR---- 148 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~---- 148 (670)
+|++++|.+ + ++......|++.++.. ++|+++|+||+|+...... ....+..+.+...++
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899999854 2 2344444588888876 7899999999998542110 001111112222221
Q ss_pred cCCeEEEeCcc--cCCCchHHHHHHHHHHcC
Q 005908 149 EIETCVECSAT--TMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 149 ~~~~~~~~SA~--~~~gi~~l~~~i~~~~~~ 177 (670)
...++|.+|+. .+.|+..+.+.++..+..
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 22479999999 679999999988887653
No 426
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.53 E-value=2.1e-13 Score=152.48 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFS---ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
-|+++|.+++|||||+++|.+.... ......++.+.....+..+ ....+.+||++|++.|... ....+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~--m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSN--MLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHH--HHHHhhcCCEE
Confidence 5899999999999999999974322 1211122222333344455 2345778999999888665 67778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc---HHHHHHHHHHhCC--CCcEEeecccC
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI--EPPIPVSMKSK 575 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~~vSA~~g 575 (670)
++|+|++++.. ....+.+..+... ++| +++|+||+|+.++... .+++.++....++ .+++++||++|
T Consensus 79 lLVVda~eg~~-~qT~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 79 LLVVACDDGVM-AQTREHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 99999998633 2223333333322 455 5799999999863322 3344455554453 46999999999
Q ss_pred -ChHHHHHHHHHHHh
Q 005908 576 -DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 -~v~~l~~~l~~~~~ 589 (670)
|++++++.|.+...
T Consensus 152 ~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 152 RGIDALREHLLQLPE 166 (614)
T ss_pred CCCHHHHHHHHHhhc
Confidence 99999999987654
No 427
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.52 E-value=6.3e-14 Score=160.43 Aligned_cols=231 Identities=13% Similarity=0.052 Sum_probs=138.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCCC--C---------CCCe--EeCCcccCCceeEEEEeCCCCccc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----KVPP--V---------HAPT--RLPPDFYPDRVPVTIIDTSSSLEN 72 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----~~~~--~---------~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~ 72 (670)
+--+|+|+|++|+|||||+++|+...-.. ...+ + .+.+ .....+.+++..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 34589999999999999999997432111 0110 0 0011 122334457889999999999988
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC--
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-- 150 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 150 (670)
...+..+++.+|++++|+|+++....... .++..++.. ++|+++|+||+|+.... .....+.+...++..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~~~~ 160 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGANAV 160 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCce
Confidence 88888999999999999999886555443 355566665 79999999999998642 334455665655432
Q ss_pred CeEEEeCcccCCCchHHHHHHHHHHc-CCCCCCCccccccc-------cHHHHHHH-HHHHHHhCCCCC-----CCCChH
Q 005908 151 ETCVECSATTMIQVPDVFYYAQKAVL-HPTAPLFDHDEQTL-------KPRCVRAL-KRIFIICDHDMD-----GALNDA 216 (670)
Q Consensus 151 ~~~~~~SA~~~~gi~~l~~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l-~ri~~~~d~~~~-----~~l~~~ 216 (670)
...+++||.++ +..+++.+..... .+............ ..+.+..| +.+....|..++ ..++.+
T Consensus 161 ~~~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~ 238 (689)
T TIGR00484 161 PIQLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIE 238 (689)
T ss_pred eEEeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence 23688898877 3332222221111 11100000000111 11122222 333333332222 234445
Q ss_pred HHHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908 217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVN 251 (670)
Q Consensus 217 el~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~ 251 (670)
++...-.. +++++....++..|++.+.+++|+|.+
T Consensus 239 ~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~ 283 (689)
T TIGR00484 239 EIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTD 283 (689)
T ss_pred HHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchh
Confidence 54322211 478888999999999999999999865
No 428
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=8.6e-14 Score=123.64 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc----cchhhhHHHhccCCEEEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----ENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~ad~ii~v 89 (670)
||+++|+.|+|||||+++|.+.......+. .+.+ .=.++||||-. .+...+-....+||++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq-------~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQ-------AIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccc-------eeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 799999999999999999988664322111 1111 12459999942 1222233556789999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
.|.+++.+.-.-. +. +.+ ++|+|-|+||+|+..... .. +..+++.+.-|. ..+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~~~pP~--fa---~~f--~~pvIGVITK~Dl~~~~~--~i-~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRSVFPPG--FA---SMF--NKPVIGVITKIDLPSDDA--NI-ERAKKWLKNAGV-KEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCccCCch--hh---ccc--CCCEEEEEECccCccchh--hH-HHHHHHHHHcCC-CCeEEEECCCCcCHHHHHH
Confidence 9999875422211 11 112 689999999999983221 12 334455555553 4689999999999999998
Q ss_pred HHH
Q 005908 170 YAQ 172 (670)
Q Consensus 170 ~i~ 172 (670)
++.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 764
No 429
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=2.3e-13 Score=133.65 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCC------------cccce---------E-----------------EEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPT------------TGEQY---------A-----------------VNVVD 466 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t------------~~~~~---------~-----------------~~~vd 466 (670)
||+++|..++|||||+++|..+.+....... .+... . ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976654321100 00000 0 01111
Q ss_pred cCCCceEEEEEecCChhhHhhhhchHhhc--ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 005908 467 QPGGNKKTLILQEIPEEGVKKILSNKEAL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544 (670)
Q Consensus 467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~--~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~D 544 (670)
. ....+.++|++|++.+... ....+ ..+|++++|+|++.+.. .....++..+... ++|+++|+||+|
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~--~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~------~ip~ivvvNK~D 149 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKT--TLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL------NIPVFVVVTKID 149 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHH--HHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEECcc
Confidence 1 2346678999999887654 34444 37999999999988754 3344555555544 799999999999
Q ss_pred CCCCcccHHHHHHHHHHhC----------------------------CCCcEEeecccC-ChHHHHHHHHH
Q 005908 545 LKPYTMAVQDSARVTQELG----------------------------IEPPIPVSMKSK-DLNNVFSRIIW 586 (670)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vSA~~g-~v~~l~~~l~~ 586 (670)
+.++.......+++.+.+. ..|++.+||.+| |+++|.+.|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9764444444444443332 337999999999 99999987754
No 430
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.51 E-value=7.4e-14 Score=137.45 Aligned_cols=149 Identities=17% Similarity=0.098 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC--------------------------CCC---CCCCeE--eCCcccCCceeEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPP---VHAPTR--LPPDFYPDRVPVT 62 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~--------------------------~~~---~~~~~~--~~~~~~~~~~~~~ 62 (670)
+|+++|+.++|||||+.+|+...-... ... ..+.+. ....+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999964321000 000 000111 2233446788999
Q ss_pred EEeCCCCccchhhhHHHhccCCEEEEEEECCChhh-----H-HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC--Ccc
Q 005908 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQST-----L-SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--NAT 134 (670)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s-----~-~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~ 134 (670)
+|||||+.++...+...++.+|++|+|+|+++... . ..... ........ ..+|+++|+||+|+.... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~- 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLARTL-GVKQLIVAVNKMDDVTVNWSEE- 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHHc-CCCeEEEEEEccccccccccHH-
Confidence 99999988777767777889999999999987421 1 11111 22233333 247899999999997421 11
Q ss_pred chhh---hhhHHHHHhcc---CCeEEEeCcccCCCch
Q 005908 135 SLEE---VMGPIMQQFRE---IETCVECSATTMIQVP 165 (670)
Q Consensus 135 ~~~~---~~~~~~~~~~~---~~~~~~~SA~~~~gi~ 165 (670)
...+ .+..+...++. ..++++|||++|.||+
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1222 22223334331 1369999999999997
No 431
>PRK12736 elongation factor Tu; Reviewed
Probab=99.51 E-value=2.2e-13 Score=145.76 Aligned_cols=164 Identities=14% Similarity=0.170 Sum_probs=107.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------C------CCCCCCCeEeCCcccCCceeEEEEeCCCCc
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------K------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
..++.++|+++|+.++|||||+++|++..... + ..++.. ......+..++..+.++||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~-~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITI-NTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccE-EEEeeEecCCCcEEEEEECCCHH
Confidence 46778999999999999999999998631100 0 111110 11223344566789999999998
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCcc-chhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~ 148 (670)
+|.......+..+|++++|+|++....-... .++..+... ++| +|+++||+|+.+..... ...+.+..+...++
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 8877777778899999999998864332222 245556555 678 67899999987432220 11223444444443
Q ss_pred c---CCeEEEeCcccCC--------CchHHHHHHHHHHc
Q 005908 149 E---IETCVECSATTMI--------QVPDVFYYAQKAVL 176 (670)
Q Consensus 149 ~---~~~~~~~SA~~~~--------gi~~l~~~i~~~~~ 176 (670)
. ..+++++||++|. ++.++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2 2479999999983 46677776666544
No 432
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.50 E-value=1.4e-13 Score=149.22 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=98.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP 468 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------------------------~~t~~~~~~~~~vd~~ 468 (670)
.+..++|+++|.+|+|||||+++|+........ ...++.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 356699999999999999999999854332211 011111222233333
Q ss_pred CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccH-HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+...+.+||++|++.+... ....+..+|++++|+|+++...+ .....++..+... . ..|+++|+||+|+.+
T Consensus 82 -~~~~i~liDtpG~~~~~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~----~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKN--MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G----INQLIVAINKMDAVN 153 (425)
T ss_pred -CCeEEEEEECCCcccchhh--HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence 4467888999998776553 45567899999999999972122 1122222223222 1 246999999999975
Q ss_pred Ccc-----cHHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908 548 YTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 548 ~~~-----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l 580 (670)
... ..+++.++.+..++ .+++++||++| |++++
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 221 13455566666665 36899999999 99873
No 433
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.4e-13 Score=114.46 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=120.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.++++|+.+|-.++||||++..|.-+....+ .||++ +.+..+... ..++.+||..|++..+.+ +.+|+....+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvG--FnvetVtyk--N~kfNvwdvGGqd~iRpl--WrhYy~gtqg 87 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQG 87 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccc-ccccc--eeEEEEEee--eeEEeeeeccCchhhhHH--HHhhccCCce
Confidence 3579999999999999999999987654332 24544 677777664 467888999999999999 9999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+|||+|+.+++..++.+..+..+....... +.|+++.+||-|+..... .+++ .+.+.+. .+.++||.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~--~~~~LvlANkQDlp~A~~-pqei---~d~leLe~~r~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMR--DAIILILANKQDLPDAMK-PQEI---QDKLELERIRDRNWYVQPSCAL 161 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhh--cceEEEEecCcccccccC-HHHH---HHHhccccccCCccEeeccccc
Confidence 999999999888777777766665544433 689999999999987332 2222 2222221 26799999
Q ss_pred cC-ChHHHHHHHHHHHh
Q 005908 574 SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~ 589 (670)
+| |+.+=|.++...+.
T Consensus 162 ~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 99 99999999887654
No 434
>PRK12735 elongation factor Tu; Reviewed
Probab=99.49 E-value=3.4e-13 Score=144.40 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CCC----CCCC---CCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE----KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~----~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
...++.++|+++|++++|||||+++|++.. +.. +..+ ..+.+. ....+..++..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 345788999999999999999999998621 100 0000 001111 122344556789999999998
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 148 (670)
+|.......+..+|++++|+|+.+....... .++..+... ++|.+ +++||+|+.+.... ......+..+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 8877777888899999999998875332221 244555554 68865 57999999743211 012223444555543
Q ss_pred c---CCeEEEeCcccCCC
Q 005908 149 E---IETCVECSATTMIQ 163 (670)
Q Consensus 149 ~---~~~~~~~SA~~~~g 163 (670)
. ..+++++||++|.|
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 163 FPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCcCceeEEecchhcccc
Confidence 2 24799999999964
No 435
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=3.4e-13 Score=131.68 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHhhccc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALAS 497 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ 497 (670)
...|.+||-||+|||||+|++...+......+.|+..-.+-++..+ ....+.+-|.+|.-+-..+ ......+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc-ccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 4568999999999999999999877655444433322222233333 2233444555552111111 113567789
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 498 ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
|+.+++|+|.+.+ ..++.+.....++..+...- .++|.++|+||+|+.+.+ ...+.++++.+.-+.++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L-~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL-ADRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh-ccCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999988 77788887777777665432 268999999999996422 23357888888876799999999
Q ss_pred C-ChHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIW 586 (670)
Q Consensus 575 g-~v~~l~~~l~~ 586 (670)
+ |+.++++.|.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9 99999988765
No 436
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.49 E-value=9.7e-14 Score=152.30 Aligned_cols=230 Identities=12% Similarity=0.060 Sum_probs=130.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------C-C---------C--CeEeCCcccCCceeEEEEeCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----------V-H---------A--PTRLPPDFYPDRVPVTIIDTS 67 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~----------~-~---------~--~~~~~~~~~~~~~~~~i~Dt~ 67 (670)
.+.-+|+|+|++|+|||||+++|+...-.....+ + . + .......+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3556899999999999999999974221111000 0 0 0 000112345678899999999
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (670)
|+.+|......+++.+|++|+|+|+++..... ...++...+.. ++|+++++||+|+.... ..+.+..+...+
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l 159 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVL 159 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHh
Confidence 99998888888999999999999998754322 22355666555 89999999999987543 234455565666
Q ss_pred ccCCeEEEeCcccCCCchHHHHHHHHHHcCCCCC------C----CccccccccH-----HHHHHHHHHHHHhCCCCCCC
Q 005908 148 REIETCVECSATTMIQVPDVFYYAQKAVLHPTAP------L----FDHDEQTLKP-----RCVRALKRIFIICDHDMDGA 212 (670)
Q Consensus 148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~------~----~~~~~~~~~~-----~~~~~l~ri~~~~d~~~~~~ 212 (670)
+...-.+....-.|.++..+++.+...+...... . ...+. .+.+ +....+.....+.+..
T Consensus 160 ~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd-~lle~~l~~~~~~~l~~~lel~~~~---- 234 (526)
T PRK00741 160 GIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDN-PELDELLGEDLAEQLREELELVQGA---- 234 (526)
T ss_pred CCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCH-HHHHHHhcccHHHHHHHHHHhhhhc----
Confidence 5322223333333433333333222222111000 0 00000 0000 0001111111111111
Q ss_pred CChHHHHHHhhh-----hcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908 213 LNDAELNEFQVK-----CFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (670)
Q Consensus 213 l~~~el~~~q~~-----~~~~~l~~~~~~~l~~~l~~~~~~~~~~ 252 (670)
+.+-.....+.. +|++++...+++.+++.+.+++|+|.+.
T Consensus 235 ~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~ 279 (526)
T PRK00741 235 SNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPR 279 (526)
T ss_pred ccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcc
Confidence 111111122222 7999999999999999999999998654
No 437
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=5.4e-13 Score=129.12 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc---cceEEEEEEcCCCceEEEEEecCChhhHhh----hhchHhhc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG---EQYAVNVVDQPGGNKKTLILQEIPEEGVKK----ILSNKEAL 495 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~---~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----~~~~~~~~ 495 (670)
++||+|+|++|||||||+|+|++.........+++ .......+..+ ....+.+||++|...... .. ....+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l-~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYL-EEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHH-HHhCc
Confidence 37999999999999999999999665432222221 01111122222 233567899998632111 10 22336
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------cHHHHHHHH----
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AVQDSARVT---- 559 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~---- 559 (670)
.++|++++|.|. +.+ +....+++.+... +.|+++|+||+|+..... ..++.++.+
T Consensus 79 ~~~d~~l~v~~~--~~~-~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 79 SEYDFFIIISST--RFS-SNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred cCcCEEEEEeCC--CCC-HHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence 789999998542 222 3344566666654 589999999999853211 111222222
Q ss_pred HH--hCCCCcEEeecc--cC-ChHHHHHHHHHHHhC
Q 005908 560 QE--LGIEPPIPVSMK--SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 560 ~~--~~~~~~~~vSA~--~g-~v~~l~~~l~~~~~~ 590 (670)
+. ...+++|.+|+. .+ |+..+.+.|+..+..
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 22 224579999998 57 999999999998874
No 438
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.48 E-value=6.5e-13 Score=131.74 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCCc-----------ccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENY-----APTT-----------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~-----~~t~-----------~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~ 488 (670)
+|+++|.+|+|||||+++|+........ ..++ +..+.........+..++.+||++|+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999864322111 1111 11122223333334567889999999887765
Q ss_pred hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+..+++.+|++++|+|++++... ....++..+... ++|+++++||+|+..
T Consensus 81 --~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 --VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAG 130 (237)
T ss_pred --HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccC
Confidence 67889999999999999988653 345555555543 699999999999875
No 439
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.48 E-value=2.1e-13 Score=143.27 Aligned_cols=191 Identities=20% Similarity=0.244 Sum_probs=131.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+++|+.||||||||-+++..++...-++- -..+.+-.--+| ...-..++|+...+..+.. ....+++||
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r-l~~i~IPadvtP-e~vpt~ivD~ss~~~~~~~--l~~EirkA~ 81 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR-LPRILIPADVTP-ENVPTSIVDTSSDSDDRLC--LRKEIRKAD 81 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccccc-CCccccCCccCc-CcCceEEEecccccchhHH--HHHHHhhcC
Confidence 356799999999999999999999999987654321 111111111122 3333556777544332222 367789999
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhC-CCCcEEeecccC
Q 005908 500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELG-IEPPIPVSMKSK 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~vSA~~g 575 (670)
++.++|+++++.+.+.+. .|+-.+.+...+. -++|||+||||+|....... .....-+..++. +...+++||++-
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 999999999999988875 7888887765332 26999999999999875444 222333444333 235699999999
Q ss_pred -ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhh
Q 005908 576 -DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSL 615 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (670)
|+.++|....+.+..|....-.......+.+...++.|++
T Consensus 161 ~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIF 201 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIF 201 (625)
T ss_pred hhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHH
Confidence 9999999999998877766544444444555555655544
No 440
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=1.1e-13 Score=158.26 Aligned_cols=234 Identities=14% Similarity=0.102 Sum_probs=142.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCC--CCC---C---------CCCCeE--eCCcccCCceeEEEEeCCCCccc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE--KVP---P---------VHAPTR--LPPDFYPDRVPVTIIDTSSSLEN 72 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~--~~~---~---------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~ 72 (670)
+-.+|+|+|++|+|||||+++|+... ... ... . ..+.+. ....+.+.+..++++||||+.+|
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 34589999999999999999997421 100 000 0 000111 12234456889999999999888
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC--
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-- 150 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 150 (670)
.......++.+|++|+|+|+......+.. ..+..+.+. ++|+|+++||+|+.... .....+.+...++..
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~----~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD----FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCee
Confidence 77778899999999999998766444443 356666666 78999999999988642 345566666666642
Q ss_pred CeEEEeCcccC-CCchHHHHHHHHHHc-CCCCCCCcccc--ccccHH---HHHHH-HHHHHHhCCCCC-----CCCChHH
Q 005908 151 ETCVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFDHDE--QTLKPR---CVRAL-KRIFIICDHDMD-----GALNDAE 217 (670)
Q Consensus 151 ~~~~~~SA~~~-~gi~~l~~~i~~~~~-~~~~~~~~~~~--~~~~~~---~~~~l-~ri~~~~d~~~~-----~~l~~~e 217 (670)
...+++||..+ .|+-+++........ ......+.... ....+. .+..| +.+....|..++ ..++.++
T Consensus 161 ~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~ 240 (693)
T PRK00007 161 PIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEE 240 (693)
T ss_pred eEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHH
Confidence 34688999887 556555542221110 00000000000 001111 11111 333222222222 3444555
Q ss_pred HHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908 218 LNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (670)
Q Consensus 218 l~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~~ 252 (670)
+...-++ +|++++...+++.|++.+.+++|+|.+.
T Consensus 241 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~ 285 (693)
T PRK00007 241 IKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV 285 (693)
T ss_pred HHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhc
Confidence 4443221 5788999999999999999999998653
No 441
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=1.5e-12 Score=128.53 Aligned_cols=168 Identities=21% Similarity=0.218 Sum_probs=121.3
Q ss_pred HhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh-----hhHhhh-
Q 005908 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKI- 488 (670)
Q Consensus 415 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----~~~~~~- 488 (670)
+........+.|+|.|.||||||||++++.+.+....+.|-|+..+.+-.++.++ ..++++||+|- ++.+.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHH
Confidence 3444556779999999999999999999999998888778777777777776653 34566888882 122221
Q ss_pred hchHhhccc-ccEEEEEEECCC--cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC
Q 005908 489 LSNKEALAS-CDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565 (670)
Q Consensus 489 ~~~~~~~~~-ad~vllv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 565 (670)
.++..+++. .++|+|+||.+. +.+.+...+.+.++.... ..|+++|.||+|........+.... ...-+..
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~ 311 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGE 311 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccchhHHHHHHHH-HHhhccc
Confidence 113334433 688999999985 567788888888888775 5899999999999864433333333 3344444
Q ss_pred CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
....+|+..+ +++.+.+.+...+..
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred cccceeeeehhhHHHHHHHHHHHhhc
Confidence 4689999999 999999888887654
No 442
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.48 E-value=1.3e-12 Score=121.74 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=57.3
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
..++++|++++|+|++++..... ..+.+.+.....++|+++|.||+|+.+... ....+..+.+.+.. ..+.+|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~~--~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYPT--IAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCcE--EEEEee
Confidence 56789999999999988743221 135555554444699999999999964321 12222333332221 257899
Q ss_pred cccCCCchHHHHHHH
Q 005908 158 ATTMIQVPDVFYYAQ 172 (670)
Q Consensus 158 A~~~~gi~~l~~~i~ 172 (670)
|+++.|++++++.+.
T Consensus 77 a~~~~~~~~L~~~l~ 91 (157)
T cd01858 77 INNPFGKGSLIQLLR 91 (157)
T ss_pred ccccccHHHHHHHHH
Confidence 999999988777553
No 443
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.48 E-value=9.2e-13 Score=128.71 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCC----------------CCeEeCCccc--------CCceeEEEEeCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVH----------------APTRLPPDFY--------PDRVPVTIIDTS 67 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~----------------~~~~~~~~~~--------~~~~~~~i~Dt~ 67 (670)
+|+|+|+.++|||||+.+|+...- .....+.. ....+...+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999985431 11110000 0000111222 237889999999
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
|+.+|......+++.+|++++|+|+++..+.+... .+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcc
Confidence 99999999999999999999999999876665432 44444443 68999999999986
No 444
>COG2262 HflX GTPases [General function prediction only]
Probab=99.47 E-value=7.6e-13 Score=134.81 Aligned_cols=156 Identities=21% Similarity=0.165 Sum_probs=111.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh--hh------HHHh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--KL------NEEL 80 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~------~~~~ 80 (670)
.-..|+++|-+|+|||||+|+|++.. +..+ ...+.+.++....+. ++..+.+.||.|.-+.-. +. -...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-CCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 45689999999999999999999876 3333 444454544443443 367899999999753211 11 1446
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
..||+++.|+|++++...+.+.. -.+.+... ..++|+|+|.||+|+..+.. ....+....+ ..+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~------~~~~~~~~~~---~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE------ILAELERGSP---NPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh------hhhhhhhcCC---CeEEEEec
Confidence 77999999999999976666653 56666654 34799999999999875422 1122222222 48999999
Q ss_pred cCCCchHHHHHHHHHHcC
Q 005908 160 TMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~ 177 (670)
+|.|++.|.+.|...+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999887753
No 445
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.47 E-value=8.6e-13 Score=146.76 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=97.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC------CCc-----e-----EEEEEecCChhhH
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP------GGN-----K-----KTLILQEIPEEGV 485 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~------g~~-----~-----~~~i~d~~g~~~~ 485 (670)
.++.|+|+|.+|+|||||+++|.+........+.++.......++.+ |.. . .+.+||++|++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 34679999999999999999998775543333221111111111111 110 0 1578999999999
Q ss_pred hhhhchHhhcccccEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc------------
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------ 550 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~------------ 550 (670)
..+ +...+..+|++++|+|++++ .++..+ ..+... ++|+++++||+|+...-.
T Consensus 85 ~~~--~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~~------~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 85 TNL--RKRGGALADIAILVVDINEGFQPQTIEAI----NILKRR------KTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HHH--HHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHHc------CCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 887 66778899999999999984 333322 222222 699999999999853100
Q ss_pred -----cHH-------HHHHHHHHhC--------------CCCcEEeecccC-ChHHHHHHHHH
Q 005908 551 -----AVQ-------DSARVTQELG--------------IEPPIPVSMKSK-DLNNVFSRIIW 586 (670)
Q Consensus 551 -----~~~-------~~~~~~~~~~--------------~~~~~~vSA~~g-~v~~l~~~l~~ 586 (670)
... +........+ ..+++++||++| |++++++.+..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 0001111122 236899999999 99999988865
No 446
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.47 E-value=4.1e-13 Score=143.90 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=101.3
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CC-----C----C-CCCCCCCeEeCCcccCCceeEEE
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VP-----E----K-VPPVHAPTRLPPDFYPDRVPVTI 63 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~-----~----~-~~~~~~~~~~~~~~~~~~~~~~i 63 (670)
|++..=...++.++|+++|+.++|||||+++|++.. +. . . ..++.- ......+..++..+.+
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti-~~~~~~~~~~~~~~~l 79 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITI-NTAHVEYETENRHYAH 79 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcce-eeEEEEEcCCCEEEEE
Confidence 333333456788999999999999999999997431 00 0 0 111111 1122334456778999
Q ss_pred EeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhh
Q 005908 64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMG 141 (670)
Q Consensus 64 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~ 141 (670)
|||||+++|.......+..+|++++|+|++........ ..+..+... ++|.+ +|+||+|+.+.... ....+.+.
T Consensus 80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 99999998877677777889999999999874332222 244445555 67765 68999998753221 01123345
Q ss_pred HHHHHhcc---CCeEEEeCcccCC
Q 005908 142 PIMQQFRE---IETCVECSATTMI 162 (670)
Q Consensus 142 ~~~~~~~~---~~~~~~~SA~~~~ 162 (670)
.+...++. ..+++++||++|.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 55555542 1479999999885
No 447
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.47 E-value=5.5e-13 Score=130.84 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------CC------cccceEEE--EE---EcCCCceEEEEEecCCh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYA-----------PT------TGEQYAVN--VV---DQPGGNKKTLILQEIPE 482 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----------~t------~~~~~~~~--~v---d~~g~~~~~~i~d~~g~ 482 (670)
+|+|+|.+|+|||||+++|+......... .+ .+..+... .+ ...+....+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 58999999999999999999765443210 00 00111111 11 11345577889999999
Q ss_pred hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc------c------
Q 005908 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT------M------ 550 (670)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~------~------ 550 (670)
..+... ...++..+|++++|+|++++.++. ...++...... +.|+++|+||+|+...+ .
T Consensus 82 ~~f~~~--~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~------~~p~iiviNK~D~~~~~~~l~~~~~~~~l~ 152 (213)
T cd04167 82 VNFMDE--VAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE------GLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred cchHHH--HHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence 888665 677889999999999999887654 33444444332 68999999999986211 0
Q ss_pred -cHHHHHHHHHHhCC------CC----cEEeecccC-ChH--------HHHHHHHHHH
Q 005908 551 -AVQDSARVTQELGI------EP----PIPVSMKSK-DLN--------NVFSRIIWAA 588 (670)
Q Consensus 551 -~~~~~~~~~~~~~~------~~----~~~vSA~~g-~v~--------~l~~~l~~~~ 588 (670)
..+++..+++.++. .| +++.||+.+ +.. ++++.|.+.+
T Consensus 153 ~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 153 HIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 12344444555543 22 788999998 765 5555555443
No 448
>PRK13351 elongation factor G; Reviewed
Probab=99.46 E-value=1.9e-13 Score=157.01 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=138.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-----C-CC----------CCe--EeCCcccCCceeEEEEeCCCCcc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-----P-VH----------APT--RLPPDFYPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-----~-~~----------~~~--~~~~~~~~~~~~~~i~Dt~G~~~ 71 (670)
....+|+|+|+.|+|||||+++|+...-..... + .. +.+ .....+.+.++.+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345799999999999999999998532110000 0 00 000 01123445688999999999999
Q ss_pred chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (670)
+...+..+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+... .....++.+...++...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~ 157 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRP 157 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCe
Confidence 8888999999999999999999877666543 44555555 7999999999998764 34566677777776532
Q ss_pred eEEEeCcccCCCchHHHHHHHHHHcCCCC----CCCcc-c-cccccH---HHHHHH-HHHHHHhCCC-----CCCCCChH
Q 005908 152 TCVECSATTMIQVPDVFYYAQKAVLHPTA----PLFDH-D-EQTLKP---RCVRAL-KRIFIICDHD-----MDGALNDA 216 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~~----~~~~~-~-~~~~~~---~~~~~l-~ri~~~~d~~-----~~~~l~~~ 216 (670)
..+......+.++..+.+.+......... ..... . ...... +++..| +.+....+.. .+..++.+
T Consensus 158 ~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~ 237 (687)
T PRK13351 158 LPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAE 237 (687)
T ss_pred EEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence 23333334443333222211111100000 00000 0 001111 111111 2211111111 13455666
Q ss_pred HHHHHhhh----------hcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908 217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVN 251 (670)
Q Consensus 217 el~~~q~~----------~~~~~l~~~~~~~l~~~l~~~~~~~~~ 251 (670)
++...-+. +|+++....+++.|++.+..++|+|.+
T Consensus 238 ~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~ 282 (687)
T PRK13351 238 QLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLE 282 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhh
Confidence 65444332 678899999999999999999999864
No 449
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=4.7e-13 Score=130.74 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhh-------HHHhccCC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL-------NEELKRAD 84 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ad 84 (670)
..|.+||-||+|||||+|.|...+- +.+++-|+-.-.+....+.+...+.+-|.||..+...+- -..++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4578999999999999999988762 222221111111221122233349999999987544332 26778899
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 85 ~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
..+||+|++.. .-++.++. +..+++.+. .+.|.++|+||+|+.+. ....+.+++..+... .++++||
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~pvsA 349 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVPVSA 349 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEEeee
Confidence 99999999988 66777664 666665543 47999999999998632 223346777777642 5899999
Q ss_pred ccCCCchHHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQK 173 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~ 173 (670)
++++|+.++++.+..
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999999987654
No 450
>PRK12736 elongation factor Tu; Reviewed
Probab=99.46 E-value=1.9e-12 Score=138.60 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=106.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC------CC---C--C---CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A--P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~------~~---~--~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.+..++|+++|..++|||||+++|++..... .+ + + ..+.......+.+..+...+.++|++|+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998632100 00 0 0 1111122223333334556788999999877
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... ....+..+|++++|+|++++.. ......+..+... ++| +|+++||+|+.+.+.. .+++.++.+
T Consensus 89 ~~~--~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 89 VKN--MITGAAQMDGAILVVAATDGPM-PQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 654 5666788999999999988643 2233444444443 677 6788999999753322 235555666
Q ss_pred HhCC----CCcEEeecccC---------ChHHHHHHHHHHHh
Q 005908 561 ELGI----EPPIPVSMKSK---------DLNNVFSRIIWAAE 589 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g---------~v~~l~~~l~~~~~ 589 (670)
..++ .|++++||++| ++.++++.+.+.+.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 6665 37999999997 35777777777654
No 451
>CHL00071 tufA elongation factor Tu
Probab=99.46 E-value=6.9e-13 Score=142.63 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=102.0
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--C----C-----C---CCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--V----P-----P---VHAPTR--LPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~----~-----~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
...++.++|+++|++++|||||+++|++..-... . . . ..+.+. ....+..++..+.++||||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 3467789999999999999999999987421100 0 0 0 001111 112344566789999999998
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 148 (670)
+|...+...+..+|++++|+|+.....-... ..+..+... ++| +|++.||+|+.+.... ....+.+..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8877778888999999999998765332222 255556655 678 7789999999753221 012223444444443
Q ss_pred c---CCeEEEeCcccCCCc
Q 005908 149 E---IETCVECSATTMIQV 164 (670)
Q Consensus 149 ~---~~~~~~~SA~~~~gi 164 (670)
. ..+++++||.+|.|+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 2 247999999999765
No 452
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.46 E-value=3.2e-13 Score=115.41 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=123.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+.++||.++|-.|+|||||+..|.+...... |.+..+..+.+... +...+.+||..|+...+.. +..|+.+.|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~k~v~~~-g~f~LnvwDiGGqr~IRpy--WsNYyenvd 87 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNTKKVEYD-GTFHLNVWDIGGQRGIRPY--WSNYYENVD 87 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcceEEEeec-CcEEEEEEecCCccccchh--hhhhhhccc
Confidence 46789999999999999999999998765433 44455777888888 6788899999999999988 999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeec
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 572 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA 572 (670)
++|+|+|.+|...|+++...+-++.....-. ..|+.+..||-|+.-. ..+++.+.++++. .+-++||
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csa 161 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSA 161 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCcc
Confidence 9999999999988888877777766544433 6999999999998762 3344455555442 4679999
Q ss_pred ccC-ChHHHHHHHHHH
Q 005908 573 KSK-DLNNVFSRIIWA 587 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~ 587 (670)
.++ |+..-.+++...
T Consensus 162 ls~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSN 177 (185)
T ss_pred ccccCccCcchhhhcC
Confidence 999 888877777654
No 453
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=1.1e-12 Score=140.87 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=103.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEE------------EEEc----CC------CceEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVN------------VVDQ----PG------GNKKT 474 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~------------~vd~----~g------~~~~~ 474 (670)
..++|+++|.+++|||||+++|.+........ -|....+... .+.+ .+ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997642211100 0111110000 0001 00 13567
Q ss_pred EEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---
Q 005908 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--- 551 (670)
Q Consensus 475 ~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--- 551 (670)
.++|++|++.|... +...+..+|++++|+|++++....+..+.+..+.... ..|+++|+||+|+.+....
T Consensus 83 ~liDtPGh~~f~~~--~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 83 SFVDAPGHETLMAT--MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEECCCHHHHHHH--HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence 88999999888765 6677788999999999997541122233333332221 2578999999999864322
Q ss_pred HHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 552 VQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 552 ~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
.+++.++.+... -.+++++||++| |++++++.|...+..+
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 233333333321 125999999999 9999999999876543
No 454
>PRK10218 GTP-binding protein; Provisional
Probab=99.46 E-value=1.7e-12 Score=144.20 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=111.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC------------CCCcccceEEEEEEcCCCceEEEEEecCChhhHhhh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLER--PFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~------------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~ 488 (670)
.-+|+|+|..++|||||+++|+.. .+.... ..+.+..+......+..+...+.+||++|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 458999999999999999999973 222211 012233344444444445678889999999888876
Q ss_pred hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHhCC--
Q 005908 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGI-- 564 (670)
Q Consensus 489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-- 564 (670)
+..+++.+|++++|+|++++... ....++..+... ++|+++++||+|+...... .+++.++...++.
T Consensus 85 --v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 85 --VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred --HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 77899999999999999987543 334444444443 6899999999998753221 2333333322121
Q ss_pred ----CCcEEeecccC-C----------hHHHHHHHHHHHhCCC
Q 005908 565 ----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 565 ----~~~~~vSA~~g-~----------v~~l~~~l~~~~~~~~ 592 (670)
.|++++||++| + +..+++.|.+.++.|.
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 25999999999 6 6788999888887654
No 455
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=6e-13 Score=144.37 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=99.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------------------CC-------CCcccceEEEEEEcC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------------------YA-------PTTGEQYAVNVVDQP 468 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------------------------~~-------~t~~~~~~~~~vd~~ 468 (670)
.+..++|+++|..++|||||+++|+....... .+ ..++.+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 35669999999999999999999985221110 00 11112222333433
Q ss_pred CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+...+.+||++|++.|... ....+..+|++++|+|++++.++.... .+...+..... ..|+++|+||+|+.+
T Consensus 83 -~~~~i~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~----~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKN--MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG----INQLIVAINKMDSVN 155 (426)
T ss_pred -CCeEEEEEECCCHHHHHHH--HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC----CCeEEEEEEChhccC
Confidence 4467889999999887654 556778999999999999985432111 11111222221 357999999999974
Q ss_pred Ccc-----cHHHHHHHHHHhCC----CCcEEeecccC-ChHH
Q 005908 548 YTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNN 579 (670)
Q Consensus 548 ~~~-----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~ 579 (670)
... ..++++++++..++ .+++++||++| |+.+
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 211 14566667777764 35899999999 9986
No 456
>CHL00071 tufA elongation factor Tu
Probab=99.45 E-value=2.2e-12 Score=138.69 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=98.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------CC--------CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------AP--------TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------~~--------t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.+..++|+++|.+++|||||+++|++....... .. ..+.........+..+...+.++|++|+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456699999999999999999999974221100 00 0111111111222224456778999998776
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... ....+..+|++++|+|+..+.. ......+..+... ++| +|+++||+|+.+.... .+++..+.+
T Consensus 89 ~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 89 VKN--MITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred HHH--HHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 554 5677889999999999987644 3344444444443 688 7789999999864332 235556666
Q ss_pred HhCC----CCcEEeecccC-Ch
Q 005908 561 ELGI----EPPIPVSMKSK-DL 577 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g-~v 577 (670)
..++ .|++++||.+| |+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HhCCCCCcceEEEcchhhcccc
Confidence 6654 46999999998 64
No 457
>PRK12735 elongation factor Tu; Reviewed
Probab=99.45 E-value=2.1e-12 Score=138.34 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=104.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcC------CCC-CC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFS-EN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~------~~~-~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.+..++|+++|.+++|||||+++|++. ... .. .+. ..+............+...+.++|++|++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456799999999999999999999962 110 00 000 0111111222222223456788999999877
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... ....+..+|++++|+|+.++.. ....+.+..+... ++|.+ +++||+|+.+.... ..++..+.+
T Consensus 89 ~~~--~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHH--HHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 654 5677789999999999998643 2333444444433 67865 57999999753222 235566666
Q ss_pred HhCC----CCcEEeecccC-C----------hHHHHHHHHHHHh
Q 005908 561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE 589 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~ 589 (670)
.+++ .+++++||++| | +.+|++.|...+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 6654 36899999998 4 5677777777654
No 458
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=1.6e-12 Score=144.55 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=110.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCCCCC------------CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908 425 RCLLFGPQNAGKSALLNSFLER--PFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~--~~~~~~~------------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~ 490 (670)
+|+|+|..++|||||+++|+.. .+..... ...+..+......+.....++.+||++|+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e-- 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE-- 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH--
Confidence 6999999999999999999863 2221110 01112222222222224578889999999888766
Q ss_pred hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--cHHHHHHHHHHhCC----
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQELGI---- 564 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~---- 564 (670)
...+++.+|++++|+|++++. ......++..+... ++|+++|+||+|+...+. ...++..+...++.
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 678899999999999998864 35556666666654 799999999999875332 13333343332221
Q ss_pred --CCcEEeecccC-----------ChHHHHHHHHHHHhCCC
Q 005908 565 --EPPIPVSMKSK-----------DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 565 --~~~~~vSA~~g-----------~v~~l~~~l~~~~~~~~ 592 (670)
.|++++||++| |+..+|+.+.+.++.|.
T Consensus 154 l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 154 LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 25999999998 48899999999887664
No 459
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.45 E-value=1.7e-12 Score=120.84 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=60.3
Q ss_pred hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCe
Q 005908 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (670)
Q Consensus 73 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (670)
..+....++++|++|+|+|++++...... .+...+... ++|+++|+||+|+.+... . .....+....+ .+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~-~~~~~~~~~~~--~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV---L-EKWKSIKESEG--IP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH---H-HHHHHHHHhCC--Cc
Confidence 34566778889999999999876443321 244444433 789999999999864211 1 11112222222 36
Q ss_pred EEEeCcccCCCchHHHHHHHH
Q 005908 153 CVECSATTMIQVPDVFYYAQK 173 (670)
Q Consensus 153 ~~~~SA~~~~gi~~l~~~i~~ 173 (670)
++.+||++|.|++++++.+.+
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~ 93 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKE 93 (156)
T ss_pred EEEEEccccccHHHHHHHHHH
Confidence 899999999999988876544
No 460
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.44 E-value=5.5e-14 Score=109.97 Aligned_cols=70 Identities=47% Similarity=0.877 Sum_probs=66.9
Q ss_pred CCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCC-----ChHHHHHHhhhhhHHHHhcc
Q 005908 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ 418 (670)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~-----~~~~~~~~~~~~~~~~~~~~ 418 (670)
||....|+.+++++++|+||++|||++|.+++++|+..++++|.|+||.+ ++.+|+.++++|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 89999999999999999999999999999999999999999999999999 89999999999999887654
No 461
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=6.5e-13 Score=128.09 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=115.3
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CC-CCCCCeEeCCcccCCceeEEEEeCCCCcc-------chhh
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGK 75 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~ 75 (670)
+....++++|.|+|.+|+|||||+|+|+.+...+. .+ ++...+.. ....++..+.+|||||.++ +...
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~--~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~ 110 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL--RLSYDGENLVLWDTPGLGDGKDKDAEHRQL 110 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH--HhhccccceEEecCCCcccchhhhHHHHHH
Confidence 44567889999999999999999999997553332 22 22112222 2223346799999999886 4444
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC--------Cc-----cchhhhhhH
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGP 142 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--------~~-----~~~~~~~~~ 142 (670)
...++...|+++++.+..++.--.+. +++..+....-+.|+++++|.+|....- .. ...++..+.
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 56788999999999998887533332 3455554444469999999999976541 00 012223333
Q ss_pred HHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 143 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+.+-+....|++..|...+.|++++...+++.+...
T Consensus 189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 344444455889999999999999999999987643
No 462
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=1.1e-12 Score=144.00 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=88.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCC----------CC---------C--eEeCCcccCCceeEEEEeCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV----------HA---------P--TRLPPDFYPDRVPVTIIDTS 67 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~----------~~---------~--~~~~~~~~~~~~~~~i~Dt~ 67 (670)
.+..+|+|+|++++|||||+++|+... .......+ .+ . ......+.++++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999986422 11110000 00 0 00112345678999999999
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (670)
|+.+|......+++.+|++|+|+|+++.. +...+.++...+.. ++|+++++||+|+.... ..+....+...+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~~PiivviNKiD~~~~~----~~~ll~~i~~~l 160 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRLR--DTPIFTFMNKLDRDIRD----PLELLDEVENEL 160 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHhc--CCCEEEEEECccccCCC----HHHHHHHHHHHh
Confidence 99888887888999999999999988742 22223455655554 79999999999986532 233344444444
Q ss_pred c
Q 005908 148 R 148 (670)
Q Consensus 148 ~ 148 (670)
+
T Consensus 161 ~ 161 (527)
T TIGR00503 161 K 161 (527)
T ss_pred C
Confidence 4
No 463
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=127.35 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=108.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhcc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKR 82 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 82 (670)
-..+|++||.|+||||||++.|++.+-... ++- ++...++..+..++..++++|+||.-+..+ ..-..++.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~F-TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCc-eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 457899999999999999999998773333 332 223336778888999999999999754322 23367899
Q ss_pred CCEEEEEEECCChhh-HHHHHH----------------------------------------HHHHHHHhc---------
Q 005908 83 ADAVVLTYACNQQST-LSRLSS----------------------------------------YWLPELRRL--------- 112 (670)
Q Consensus 83 ad~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~l~~~--------- 112 (670)
||++++|+|+....+ .+.+.. .....++++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986554 222221 111112211
Q ss_pred ----------------CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 113 ----------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 113 ----------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
..-+|.+.|.||+|+... +....+.+.. ..+.+||+.+.|+++|.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence 013789999999998752 3334444444 589999999999999999999987
No 464
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.43 E-value=2.8e-12 Score=137.58 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=102.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CCcccceEEE------------EEEcC------C----Cce
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVN------------VVDQP------G----GNK 472 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~t~~~~~~~~------------~vd~~------g----~~~ 472 (670)
.+..++|+++|..++|||||+.+|.+........ .|....+... .+.+. + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3456999999999999999999997632111110 1111111000 00000 1 125
Q ss_pred EEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-
Q 005908 473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA- 551 (670)
Q Consensus 473 ~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~- 551 (670)
.+.+||++|++.+... .......+|++++|+|++++.........+..+.... ..|+++|+||+|+.+....
T Consensus 86 ~i~liDtPG~~~f~~~--~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 86 RVSFVDAPGHETLMAT--MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEEEEECCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEeeccccchhHH
Confidence 6788999999887654 5566677899999999997631122222222332221 2478999999999864332
Q ss_pred --HHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 552 --VQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 552 --~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
.+++.++.+... ..+++++||++| |++++++.|.+.+..+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 233333433321 235899999999 9999999999876543
No 465
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.43 E-value=5.4e-12 Score=129.71 Aligned_cols=80 Identities=28% Similarity=0.347 Sum_probs=53.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE-----eCC-----------------ccc-CCceeEEEEeCCCC-
Q 005908 15 VVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR-----LPP-----------------DFY-PDRVPVTIIDTSSS- 69 (670)
Q Consensus 15 I~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~-----~~~-----------------~~~-~~~~~~~i~Dt~G~- 69 (670)
|+|+|.||||||||+|+|++..... ++|.+.-... ... ..+ ...+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999887432 2332111111 100 011 13478999999998
Q ss_pred ---ccchhhhHH---HhccCCEEEEEEECCC
Q 005908 70 ---LENKGKLNE---ELKRADAVVLTYACNQ 94 (670)
Q Consensus 70 ---~~~~~~~~~---~~~~ad~ii~v~d~~~ 94 (670)
.++..+... .+++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334444444 5999999999999973
No 466
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.43 E-value=2.2e-12 Score=124.21 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=61.5
Q ss_pred chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH-----HH
Q 005908 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ 146 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~ 146 (670)
+..++..+++.+|++++|+|+++.... |...+.....++|+++|+||+|+...... ......+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence 467788899999999999999876421 22222222347899999999999753221 11122222 11
Q ss_pred hc-cCCeEEEeCcccCCCchHHHHHHHH
Q 005908 147 FR-EIETCVECSATTMIQVPDVFYYAQK 173 (670)
Q Consensus 147 ~~-~~~~~~~~SA~~~~gi~~l~~~i~~ 173 (670)
.+ ...+++++||++|.|++++++.+.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 11 1125899999999999998876543
No 467
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=2.7e-12 Score=126.86 Aligned_cols=160 Identities=22% Similarity=0.249 Sum_probs=108.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccc----hhhhH----HHh
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----KGKLN----EEL 80 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----~~~~~----~~~ 80 (670)
.....|+|.|.||||||||++.+++.+.... +|-++-. ..-+.+..+..+++++||||.-+- ...++ .++
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~-i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKG-IHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccc-eeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 3567899999999999999999998874333 4432111 133456677789999999997421 11111 233
Q ss_pred c-cCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 81 K-RADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 81 ~-~ad~ii~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+ -+++|+|+||.+.. -+.+... .++..++... +.|+++|.||+|..+.... ++ +......-+. .....++
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~---~~-~~~~~~~~~~-~~~~~~~ 317 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELF-KAPIVVVINKIDIADEEKL---EE-IEASVLEEGG-EEPLKIS 317 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhc-CCCeEEEEecccccchhHH---HH-HHHHHHhhcc-cccccee
Confidence 3 36899999998754 5566655 4888887765 4999999999998765433 22 2222333332 2478899
Q ss_pred cccCCCchHHHHHHHHHHcC
Q 005908 158 ATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~ 177 (670)
+..+.+++.+-+.+.+....
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeehhhHHHHHHHHHHHhhc
Confidence 99999999888877776543
No 468
>PRK12739 elongation factor G; Reviewed
Probab=99.42 E-value=8e-13 Score=151.28 Aligned_cols=231 Identities=11% Similarity=0.118 Sum_probs=136.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC-------CC------------CCCCCCCeEeCCcccCCceeEEEEeCCCCcc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVP-------EK------------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 71 (670)
+-.+|+|+|++|+|||||+++|+...-. .. ..++. .......+.+++..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgit-i~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT-ITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCC-ccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567999999999999999999753110 00 00000 0001223445788999999999988
Q ss_pred chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--
Q 005908 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-- 149 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 149 (670)
+...+..+++.+|++|+|+|+.+....... .++..+... ++|+|+++||+|+.... .......+...++.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~ 157 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANA 157 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCc
Confidence 888888999999999999998876443332 356666665 78999999999998642 34455566565543
Q ss_pred CCeEEEeCcccCCC-chHHHHHHHHHHcCCC--CCCCccc--cccccHHHHHH----HHHHHHHhCCCCCCC-----CCh
Q 005908 150 IETCVECSATTMIQ-VPDVFYYAQKAVLHPT--APLFDHD--EQTLKPRCVRA----LKRIFIICDHDMDGA-----LND 215 (670)
Q Consensus 150 ~~~~~~~SA~~~~g-i~~l~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~----l~ri~~~~d~~~~~~-----l~~ 215 (670)
....+++|+..+.+ +-++...... +.... ...+... .....+...++ ++.+....+...+.+ +..
T Consensus 158 ~~~~iPis~~~~f~g~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~ 236 (691)
T PRK12739 158 VPIQLPIGAEDDFKGVIDLIKMKAI-IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITE 236 (691)
T ss_pred eeEEecccccccceEEEEcchhhhh-hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCH
Confidence 12457888887642 3233321111 11110 0000000 00011111112 222222222222222 334
Q ss_pred HHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCcc
Q 005908 216 AELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVN 251 (670)
Q Consensus 216 ~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~ 251 (670)
+++...-. -+|++++...+++.+++.+.+++|+|.+
T Consensus 237 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~ 282 (691)
T PRK12739 237 EEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLD 282 (691)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhh
Confidence 44333222 2678889999999999999999999865
No 469
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=1.7e-12 Score=114.33 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh---------hhHHHhcc
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKR 82 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~ 82 (670)
+|+|+|.+|||||||+|+|++.+. ....++..... ....+...+..+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 699999999999999999998653 22233332222 2223334667788999999864211 12244588
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 124 (670)
+|++++|+|.+++.. +... .++++++ .++|+++|.||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence 999999999877432 2222 3566664 38999999998
No 470
>PRK00049 elongation factor Tu; Reviewed
Probab=99.42 E-value=1.9e-12 Score=138.46 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=98.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCC---C-------------C-CCCCCCCeEeCCcccCCceeEEEEeCCCCc
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---E-------------K-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~---~-------------~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
..++.++|+++|+.++|||||+++|++.... . . ..++... .....+..++..+.++||||+.
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~-~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN-TAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe-eeEEEEcCCCeEEEEEECCCHH
Confidence 4577899999999999999999999873100 0 0 1111000 0122344567789999999998
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 148 (670)
+|.......+..+|++++|+|++....-.. ..++..+... ++|++ +++||+|+.+.... ......+..+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887777788899999999999876533222 2355666665 68976 58999999742211 011223333444332
Q ss_pred c---CCeEEEeCcccCCC
Q 005908 149 E---IETCVECSATTMIQ 163 (670)
Q Consensus 149 ~---~~~~~~~SA~~~~g 163 (670)
. ..+++++||++|.+
T Consensus 163 ~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 163 FPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCccCCcEEEeecccccC
Confidence 1 24789999999763
No 471
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.41 E-value=1e-12 Score=122.42 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc-cCCceeEEEEeCCCCccchhhhHH---HhccCCEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVV 87 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~ii 87 (670)
.-.|+|+|++|+|||+|+.+|..+......+....... ..+ ...+..+.++|+||+.+....... +...+.+||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45699999999999999999999977665555422222 222 244667999999999987765444 488999999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCC
Q 005908 88 LTYACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDH 131 (670)
Q Consensus 88 ~v~d~~~-~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~ 131 (670)
||+|.+. .....++.++++..+... ...+|++|++||.|+....
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 9999874 456777777777777442 3579999999999998654
No 472
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1e-11 Score=112.66 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=113.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------CC--CcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--------AP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~ 490 (670)
..+.||+|.|+.++||||++.++.......+. .+ +++.....-.+... +.....+++++||+++.-+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm-- 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM-- 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH--
Confidence 45689999999999999999999987643221 11 11211222222333 4456778999999999998
Q ss_pred hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC-CCCcEE
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIP 569 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 569 (670)
+.-..++++++++++|.+.+..+ .....+..+.... .+|+++.+||.||..... .+.++++.+.-. -.|+++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhccCCCceee
Confidence 88889999999999999999887 4555555554432 399999999999988443 444444444331 235999
Q ss_pred eecccC-ChHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~ 587 (670)
++|..+ +..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 999999 998888887765
No 473
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.41 E-value=3.8e-12 Score=123.20 Aligned_cols=167 Identities=18% Similarity=0.113 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchh---hh--------HHH
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG---KL--------NEE 79 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~~ 79 (670)
++|+++|.+|||||||+|+|++...........+.+. ........+..+.++||||..+... .. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999999874322110111111 1222334677899999999865421 11 123
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC---CCCEEEEEeCCCCCCCCCccc----hhhhhhHHHHHhccCCe
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIET 152 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~ 152 (670)
..++|++|+|+++.+ .+-.+ ...++.+++... -.++++|.|+.|......... ....+..+.+.++..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r-- 155 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR-- 155 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe--
Confidence 467899999999876 33222 235555655321 368899999999765432101 124456666666643
Q ss_pred EEEeC-----cccCCCchHHHHHHHHHHcCCCCCCCc
Q 005908 153 CVECS-----ATTMIQVPDVFYYAQKAVLHPTAPLFD 184 (670)
Q Consensus 153 ~~~~S-----A~~~~gi~~l~~~i~~~~~~~~~~~~~ 184 (670)
++..+ +..+.++.+|++.+.+.+..+....|.
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~ 192 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYT 192 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 33333 567889999999998888765554443
No 474
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.41 E-value=1.7e-12 Score=139.27 Aligned_cols=151 Identities=17% Similarity=0.069 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------CCCC----------C-----------CeEeCCcccCCce
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH----------A-----------PTRLPPDFYPDRV 59 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~------------~~~~----------~-----------~~~~~~~~~~~~~ 59 (670)
++|+++|+.++|||||+++|+...-.... .+.. + .......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754311100 1110 0 0001122335677
Q ss_pred eEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh--
Q 005908 60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE-- 137 (670)
Q Consensus 60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~-- 137 (670)
++.|+||||+++|...+...+..+|++|+|+|+.....-+.. .....++... ..++++|+||+|+.+.... ..+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence 899999999998877777889999999999998765332221 1233333332 3468999999999753221 111
Q ss_pred -hhhhHHHHHhcc-CCeEEEeCcccCCCchHH
Q 005908 138 -EVMGPIMQQFRE-IETCVECSATTMIQVPDV 167 (670)
Q Consensus 138 -~~~~~~~~~~~~-~~~~~~~SA~~~~gi~~l 167 (670)
+.+..+...++. ..+++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 222333344332 136999999999999863
No 475
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.40 E-value=2.8e-12 Score=139.77 Aligned_cols=155 Identities=16% Similarity=0.075 Sum_probs=98.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------CCCCC-------------------C--eEeCCccc
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVHA-------------------P--TRLPPDFY 55 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~------------~~~~~-------------------~--~~~~~~~~ 55 (670)
.+..++|+++|+.++|||||+++|+...-.... .+... . ......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 467899999999999999999999865311100 11100 0 00111233
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 135 (670)
.++..+.|+||||+++|...+...+..+|++++|+|++....-.... ....+.... ..|+|+|+||+|+.+.... .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~~~~-~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDYSEE-V 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccchhH-H
Confidence 55778999999999888766667789999999999987653221111 122233332 3578999999999753221 1
Q ss_pred hhhhhh---HHHHHhc--cCCeEEEeCcccCCCchHH
Q 005908 136 LEEVMG---PIMQQFR--EIETCVECSATTMIQVPDV 167 (670)
Q Consensus 136 ~~~~~~---~~~~~~~--~~~~~~~~SA~~~~gi~~l 167 (670)
..+... .+...++ ...+++++||++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222222 2233332 1247999999999999864
No 476
>PLN03127 Elongation factor Tu; Provisional
Probab=99.40 E-value=3.4e-12 Score=137.76 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=103.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcC------CC--C--------CC-CCCCCCCeEeCCcccCCceeEEEEeCCCC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATE------SV--P--------EK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~------~~--~--------~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 69 (670)
...++.++|+++|+.++|||||+++|.+. .. . ++ ..++... .....+..++..+.++||||+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCc
Confidence 34567899999999999999999999732 10 0 00 1111111 122334456778999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCcc-chhhhhhHHHHHh
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF 147 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~ 147 (670)
.+|...+...+..+|++++|+|+++...-+. ...+..+... ++| +|++.||+|+.+..... .....+..+...+
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 9887777777788999999999876543322 2355566666 788 57899999997532210 0111222333322
Q ss_pred c---cCCeEEEeCcc---cCCC-------chHHHHHHHHHH
Q 005908 148 R---EIETCVECSAT---TMIQ-------VPDVFYYAQKAV 175 (670)
Q Consensus 148 ~---~~~~~~~~SA~---~~~g-------i~~l~~~i~~~~ 175 (670)
+ ...+++++||. +|.| +.+|++.+...+
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2 12478888886 4555 456666555543
No 477
>PRK12289 GTPase RsgA; Reviewed
Probab=99.40 E-value=3e-12 Score=133.16 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=58.9
Q ss_pred hhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeE
Q 005908 75 KLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (670)
Q Consensus 75 ~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (670)
+....+.++|.+++|+|+.++. +...+. +|+...... ++|++||+||+|+.+... . +........++ .++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~~--~ip~ILVlNK~DLv~~~~---~-~~~~~~~~~~g--~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAEST--GLEIVLCLNKADLVSPTE---Q-QQWQDRLQQWG--YQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEEchhcCChHH---H-HHHHHHHHhcC--CeE
Confidence 3446789999999999998775 343444 466655443 899999999999964311 1 11112223344 368
Q ss_pred EEeCcccCCCchHHHH
Q 005908 154 VECSATTMIQVPDVFY 169 (670)
Q Consensus 154 ~~~SA~~~~gi~~l~~ 169 (670)
+.+||++|.|++++++
T Consensus 153 ~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 153 LFISVETGIGLEALLE 168 (352)
T ss_pred EEEEcCCCCCHHHHhh
Confidence 9999999999987665
No 478
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.39 E-value=8.1e-12 Score=133.91 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=96.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcC------CCCCCC---C-----CCcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENY---A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~---~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.++.++|+++|..++|||||+++|++. .....+ + ...+.......+.++.....+.+||++|++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356799999999999999999999842 111000 0 00111122233344434567889999999887
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... .......+|++++|+|++++..-+ ..+.+..+... ++|.+ +++||+|+.+.... .++++++.+
T Consensus 89 ~~~--~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 89 VKN--MITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 654 556667899999999999864422 33344444433 57755 68999999864322 235666777
Q ss_pred HhCC----CCcEEeecccC
Q 005908 561 ELGI----EPPIPVSMKSK 575 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g 575 (670)
.+++ .|++++||++|
T Consensus 160 ~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred hcCCCccCccEEECccccc
Confidence 7764 46999999987
No 479
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.39 E-value=1.4e-12 Score=128.33 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC------------------------CCC-------CCcccceEEEEEEcCCCceE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSE------------------------NYA-------PTTGEQYAVNVVDQPGGNKK 473 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~------------------------~~~-------~t~~~~~~~~~vd~~g~~~~ 473 (670)
+|+++|.+++|||||+.+|+...-.. ..+ ..++.+.....+.+ +...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 48999999999999999997421110 000 00111122223333 3467
Q ss_pred EEEEecCChhhHhhhhchHhhcccccEEEEEEECCCccc---H---HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+.+||++|+..+... ....+..+|++++|+|++++.. | ............. . .+|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~--~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPN--MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHH--HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence 888999998766554 5667788999999999998521 1 1122222222222 1 368999999999984
Q ss_pred C---ccc----HHHHHHHHHHhCC----CCcEEeecccC-ChH
Q 005908 548 Y---TMA----VQDSARVTQELGI----EPPIPVSMKSK-DLN 578 (670)
Q Consensus 548 ~---~~~----~~~~~~~~~~~~~----~~~~~vSA~~g-~v~ 578 (670)
. +.. .++++.+.+..++ .+++++||++| |++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2 111 2333334555554 35999999999 987
No 480
>PLN03126 Elongation factor Tu; Provisional
Probab=99.39 E-value=3.4e-12 Score=138.35 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=101.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCC------CCCC-----CC---CCCCeE--eCCcccCCceeEEEEeCCCCcc
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESV------PEKV-----PP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~------~~~~-----~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (670)
..++.++|+++|++++|||||+++|++... .... .+ ..+.+. ....+..++..+.++||||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 457789999999999999999999995321 1000 00 000000 1122445677899999999999
Q ss_pred chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc-
Q 005908 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR- 148 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~- 148 (670)
|...+...+..+|++++|+|+.+...-.. ..++..+... ++| +|+++||+|+.+.... ....+.+..+...++
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888899999999999886543332 2355556655 778 7789999999753211 012223444444432
Q ss_pred --cCCeEEEeCcccCCCc
Q 005908 149 --EIETCVECSATTMIQV 164 (670)
Q Consensus 149 --~~~~~~~~SA~~~~gi 164 (670)
...+++++||.+|.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 1247999999998665
No 481
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.38 E-value=5.4e-12 Score=125.14 Aligned_cols=167 Identities=18% Similarity=0.098 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----hhchHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~a 498 (670)
--|.+||-||+|||||++++...+..+...|-|+-.-..-++.+. ....+.+-|.+|--+-.+ -.+-...+.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 358899999999999999999887666555533322222333333 445566667766311111 11245677899
Q ss_pred cEEEEEEECCCcc---cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeeccc
Q 005908 499 DVTIFVYDSSDEY---SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 499 d~vllv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.++++|+|++..+ -.++...+..++..|...- .++|.++|+||+|+...... ....+.+.+..+....+++||.+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L-~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL-AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh-ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 9999999998544 3566666677776664321 26999999999996653322 44444555555655444499999
Q ss_pred C-ChHHHHHHHHHHHhCCC
Q 005908 575 K-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~~ 592 (670)
+ |+++|...+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9 99999999999886543
No 482
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=3.4e-11 Score=123.84 Aligned_cols=162 Identities=19% Similarity=0.148 Sum_probs=97.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CceEEEEEecCCh-
Q 005908 426 CLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIPE- 482 (670)
Q Consensus 426 I~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~-~~~~~~~~vd-------------------~~g-~~~~~~i~d~~g~- 482 (670)
|+++|.||||||||+|+|++........| || ........+. .+| ....+.+||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999999875432222 22 2222111110 122 2246788999996
Q ss_pred ---hhHhhh-hchHhhcccccEEEEEEECCCc-------------ccHHHH-------HHH--------HHHHH------
Q 005908 483 ---EGVKKI-LSNKEALASCDVTIFVYDSSDE-------------YSWKRT-------KEL--------LVEVA------ 524 (670)
Q Consensus 483 ---~~~~~~-~~~~~~~~~ad~vllv~D~s~~-------------~s~~~~-------~~~--------~~~i~------ 524 (670)
++...+ .+....+++||++++|+|++.. +..+++ ..| +..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334433 1234568999999999999731 001111 111 00000
Q ss_pred --------------------------HhcC-C------------------CCCCCcEEEEEeCCCCCCCcccHHHHHHHH
Q 005908 525 --------------------------RLGE-D------------------SGYGVPCLLIASKDDLKPYTMAVQDSARVT 559 (670)
Q Consensus 525 --------------------------~~~~-~------------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 559 (670)
+... . ....+|+|+|+||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 0000 0 012579999999999864322 222333
Q ss_pred HHhCCCCcEEeecccC-ChHHHHH-HHHHHHhC
Q 005908 560 QELGIEPPIPVSMKSK-DLNNVFS-RIIWAAEH 590 (670)
Q Consensus 560 ~~~~~~~~~~vSA~~g-~v~~l~~-~l~~~~~~ 590 (670)
......+++++||+.+ ++.++.+ .+.+.++.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 3444556999999999 9999998 58888754
No 483
>PLN03126 Elongation factor Tu; Provisional
Probab=99.38 E-value=1.5e-11 Score=133.43 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=98.3
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCC------CC---C-----CCcccceE--EEEEEcCCCceEEEEEecCCh
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A-----PTTGEQYA--VNVVDQPGGNKKTLILQEIPE 482 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~------~~---~-----~t~~~~~~--~~~vd~~g~~~~~~i~d~~g~ 482 (670)
..+..++|+++|.+++|||||+++|++..... .+ + ...+.... ...+.+ ....+.++|++|+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence 34667999999999999999999999632111 00 0 00111111 222333 3457788999999
Q ss_pred hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHH
Q 005908 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSAR 557 (670)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~ 557 (670)
+.|-.- ....+..+|++++|+|+.++.. ....+++..+... ++| +|+++||+|+.+.+.. .+++..
T Consensus 155 ~~f~~~--~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ADYVKN--MITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred HHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 887664 5677789999999999998754 3334444444444 678 7889999999863322 234555
Q ss_pred HHHHhCC----CCcEEeecccC-Ch
Q 005908 558 VTQELGI----EPPIPVSMKSK-DL 577 (670)
Q Consensus 558 ~~~~~~~----~~~~~vSA~~g-~v 577 (670)
+.+..++ .|++++||.+| |+
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccccc
Confidence 5666543 26999999988 54
No 484
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=5.6e-11 Score=128.10 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=78.0
Q ss_pred eeEEEEeCCCCccc-----hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908 59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (670)
Q Consensus 59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 133 (670)
..+.++||||.... ...+...+..+|+|+||+|.+...+..+. .+.+.+++...+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 35789999998642 22345689999999999999876554442 367777766434699999999998643321
Q ss_pred cchhhhhhHHHH-H----hccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908 134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 134 ~~~~~~~~~~~~-~----~~~~~~~~~~SA~~~~gi~~l~~~i~~~ 174 (670)
..+.+..+.. . ......+|++||++|.|++++++.+...
T Consensus 308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 1233333322 1 1123469999999999999999988764
No 485
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.37 E-value=1.5e-11 Score=124.13 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------C-Cc----------ccceEEEEEEcCCCceEEEEEecCChhh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYA---------P-TT----------GEQYAVNVVDQPGGNKKTLILQEIPEEG 484 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~-t~----------~~~~~~~~vd~~g~~~~~~i~d~~g~~~ 484 (670)
+|+|+|.+|+|||||+++|+......... + |+ +..+......+..+..++.+||++|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 69999999999999999998532221111 1 11 1122333334444567888999999988
Q ss_pred HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC
Q 005908 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564 (670)
Q Consensus 485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 564 (670)
|... ....++.+|++++|+|++++.. .....++...... ++|+++++||+|+.... .....+++...++.
T Consensus 84 f~~~--~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~-~~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSED--TYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLR------GIPIITFINKLDREGRD-PLELLDEIEEELGI 153 (267)
T ss_pred HHHH--HHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhc------CCCEEEEEECCccCCCC-HHHHHHHHHHHHCC
Confidence 7765 5678899999999999998754 2233444443332 69999999999987632 22335566666776
Q ss_pred C
Q 005908 565 E 565 (670)
Q Consensus 565 ~ 565 (670)
.
T Consensus 154 ~ 154 (267)
T cd04169 154 D 154 (267)
T ss_pred C
Confidence 5
No 486
>PRK09866 hypothetical protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=132.14 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=73.3
Q ss_pred eEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908 472 KKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (670)
Q Consensus 472 ~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~ 546 (670)
..+.++||+|-.. .... ....+..+|+|++|+|+++..+.. .....+.+.+... +.|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~--M~eqL~eADvVLFVVDat~~~s~~-DeeIlk~Lkk~~K----~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKM--LNQQLARASAVLAVLDYTQLKSIS-DEEVREAILAVGQ----SVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHH--HHHHHhhCCEEEEEEeCCCCCChh-HHHHHHHHHhcCC----CCCEEEEEEcccCC
Confidence 3566799999633 2222 345799999999999998865533 2344455544311 25999999999987
Q ss_pred CCcc-cHHHHHHHHHH------hCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 547 PYTM-AVQDSARVTQE------LGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 547 ~~~~-~~~~~~~~~~~------~~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
++.. ..+.+..+.+. ..+..+++|||++| |++++++.|.+.
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 5322 23344444321 12446999999999 999999999873
No 487
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.36 E-value=4.7e-12 Score=143.81 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=99.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC------------CCCCC-CC------------------e--EeCCc
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPVH-AP------------------T--RLPPD 53 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~------------~~~~~-~~------------------~--~~~~~ 53 (670)
...++.++|+|+|++|+|||||+++|+...-... ..++. +. + .....
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3456789999999999999999999986541111 11110 00 0 01112
Q ss_pred ccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908 54 FYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (670)
Q Consensus 54 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 133 (670)
+..++..+.|+||||+++|...+...+..+|++++|+|++....-+.. .....+.... .+|+|+|+||+|+.+....
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~~-~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLLG-IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHhC-CCeEEEEEEecccccchhH
Confidence 335567899999999988776667788999999999998765322211 1233344332 3678999999999752221
Q ss_pred cchhh---hhhHHHHHhcc-CCeEEEeCcccCCCchH
Q 005908 134 TSLEE---VMGPIMQQFRE-IETCVECSATTMIQVPD 166 (670)
Q Consensus 134 ~~~~~---~~~~~~~~~~~-~~~~~~~SA~~~~gi~~ 166 (670)
...+ .+..+...++. ..+++++||++|.|+.+
T Consensus 176 -~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 -VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred -HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1222 22233334332 12589999999999984
No 488
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.8e-12 Score=112.36 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.-|++++|-.|+|||||++.|-.++.....|+..+++. .....+++++.+|.+|+..-...+..++..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4567999999999999999999999987777776544443 4567789999999999988888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------------CCeEEEe
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------------IETCVEC 156 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 156 (670)
+|+-+.+.|.+.+.++-..+... -.+.|+++.+||+|....... ..-.....+.+..+. ....+.|
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se-~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE-DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH-HHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999988876555544332 248999999999999876432 111111112222111 1246778
Q ss_pred CcccCCCchHHHHHHH
Q 005908 157 SATTMIQVPDVFYYAQ 172 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~ 172 (670)
|...+.|-.+.|.++.
T Consensus 174 si~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEccCccceeeeehh
Confidence 8888777666665543
No 489
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.36 E-value=6.4e-12 Score=124.65 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhccCCE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRADA 85 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~ 85 (670)
-|.+||-||+|||||++.+..-+. ..++|-|+-.-.+.+-.......|.+-|.||..+..+ ..-.++..+-+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 367999999999999999987762 2224322111111111114556799999999764322 22366788999
Q ss_pred EEEEEECCChhh---HHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 86 VVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 86 ii~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++.|+|++..+. .++.. .+..++..+. .++|.+||+||+|+....+. .+.....+.+..+....++ +||.
T Consensus 241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~-ISa~ 316 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL-ISAL 316 (369)
T ss_pred eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-eehh
Confidence 999999986553 55554 3677776654 38999999999996644322 2333344444444322233 9999
Q ss_pred cCCCchHHHHHHHHHHcC
Q 005908 160 TMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~ 177 (670)
+++|++++...+.+.+..
T Consensus 317 t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 317 TREGLDELLRALAELLEE 334 (369)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999999988877653
No 490
>PRK00049 elongation factor Tu; Reviewed
Probab=99.35 E-value=2.9e-11 Score=129.44 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=103.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCC------CCC-----CC---CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENY-----AP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~------~~~-----~~---t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.+..++|+++|..++|||||+++|++.... ..+ .+ ..+.......+.+..+...+.++|++|+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999973110 000 00 1111111222223223456778999999776
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... ....+..+|++++|+|+.++.. .....++..+... ++|.+ +++||+|+.+.... ..++.++..
T Consensus 89 ~~~--~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHH--HHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 554 5667889999999999988644 3344444444443 68876 58999999753222 234445555
Q ss_pred HhCC----CCcEEeecccC-C----------hHHHHHHHHHHHh
Q 005908 561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE 589 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~ 589 (670)
..++ .|++++||++| + +..+++.|...+.
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5554 36899999986 4 4577777776544
No 491
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.35 E-value=5e-12 Score=136.60 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=100.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCC--------------------------CCCCCC--CCeE---eCCcccCC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--------------------------KVPPVH--APTR---LPPDFYPD 57 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--------------------------~~~~~~--~~~~---~~~~~~~~ 57 (670)
.++.++|+++|+.++|||||+.+|+...-.. +..... ...+ ....+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4678999999999999999999997422100 000000 0000 11224456
Q ss_pred ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-CEEEEEeCCCCCC
Q 005908 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS-------RLSSYWLPELRRLEIKV-PIIVAGCKLDLRG 129 (670)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~ 129 (670)
+..++++||||+++|...+...+..+|++|+|+|+++. .++ ...+ .+..++.. ++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence 78999999999999999999999999999999999863 221 2222 33334444 66 4788999999862
Q ss_pred CC--Cc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchH
Q 005908 130 DH--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPD 166 (670)
Q Consensus 130 ~~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~ 166 (670)
.. +. ....+.+..+.++.+. ..+++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 10 0112344555555542 13799999999999864
No 492
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.35 E-value=1.8e-11 Score=133.42 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=94.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------CCCcc-------------------cceEEEEEEcCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTG-------------------EQYAVNVVDQPG 469 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~t~~-------------------~~~~~~~vd~~g 469 (670)
+..++|+|+|.+++|||||+++|+........ .++++ ............
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 55699999999999999999999865433221 11110 111122222222
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~ 549 (670)
....+.++|++|++.|... ....+..+|++++|+|++.+..-+. ......+.... ..|+|+++||+|+.+..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~--~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRN--MATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG-----IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred CCcEEEEEECCCcHHHHHH--HHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC-----CCceEEEEEeeccccch
Confidence 3457788999998877553 4556799999999999987643211 11122222221 25789999999997522
Q ss_pred c-c----HHHHHHHHHHhC---CCCcEEeecccC-ChHHH
Q 005908 550 M-A----VQDSARVTQELG---IEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 550 ~-~----~~~~~~~~~~~~---~~~~~~vSA~~g-~v~~l 580 (670)
. . ..+...+.+..+ ..+++++||++| |+.++
T Consensus 177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1 1 122333334443 246999999999 98764
No 493
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.35 E-value=1.3e-11 Score=140.38 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=97.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------CCCcccceE---------------------EEEEE
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTGEQYA---------------------VNVVD 466 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~t~~~~~~---------------------~~~vd 466 (670)
.+..++|+|+|.+|+|||||+++|+........ .+++++.+. ...+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999976544331 122221111 22233
Q ss_pred cCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908 467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (670)
Q Consensus 467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~ 546 (670)
++ ...+.++|++|++.+... ....+..+|++++|+|++.+..- ...+....+.... ..|+++++||+|+.
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~--~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~-----~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRN--MVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLG-----IRHVVLAVNKMDLV 170 (632)
T ss_pred cC--CceEEEEECCChHHHHHH--HHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhC-----CCeEEEEEEecccc
Confidence 33 346678999999877553 45578899999999999876432 2222222233221 25788999999997
Q ss_pred CCcc-c----HHHHHHHHHHhCCC--CcEEeecccC-ChHH
Q 005908 547 PYTM-A----VQDSARVTQELGIE--PPIPVSMKSK-DLNN 579 (670)
Q Consensus 547 ~~~~-~----~~~~~~~~~~~~~~--~~~~vSA~~g-~v~~ 579 (670)
+... . ..+..++.+.+++. +++++||++| |+.+
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 5221 1 23334444566653 5899999999 9874
No 494
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.7e-12 Score=131.79 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
.+..-|+++|+-.-|||||+..+.+.+......+-.+... +.+..+. ....+.|+||||++.|..+...-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3456799999999999999999998887666554332222 2222221 346799999999999999998888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCCC
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
++|+|+++.-.-+.+. -++.++.. +.|++++.||+|+.+.+.. ...... ......++....++++||++|+|
T Consensus 83 ILVVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999864433332 34445555 8999999999999864322 111111 11233344445799999999999
Q ss_pred chHHHHHHHHH
Q 005908 164 VPDVFYYAQKA 174 (670)
Q Consensus 164 i~~l~~~i~~~ 174 (670)
|++|++.+.-.
T Consensus 158 i~eLL~~ill~ 168 (509)
T COG0532 158 IDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHH
Confidence 99999977643
No 495
>PRK12288 GTPase RsgA; Reviewed
Probab=99.34 E-value=1.4e-11 Score=128.18 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=59.8
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
..++|.+++|++++...++..+.. |+...... ++|++||+||+|+...... .............+ .+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~-~~~~~~~~~y~~~g--~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGR-AFVNEQLDIYRNIG--YRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHH-HHHHHHHHHHHhCC--CeEEEEeCC
Confidence 456899999999988888888874 76666544 7999999999999754211 01111112223343 379999999
Q ss_pred cCCCchHHHH
Q 005908 160 TMIQVPDVFY 169 (670)
Q Consensus 160 ~~~gi~~l~~ 169 (670)
++.|++++++
T Consensus 192 tg~GideL~~ 201 (347)
T PRK12288 192 TGEGLEELEA 201 (347)
T ss_pred CCcCHHHHHH
Confidence 9999988776
No 496
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.34 E-value=2.8e-11 Score=118.36 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC--C----------------CcccceEEEEEEc------CCCceEEEEEecC
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYA--P----------------TTGEQYAVNVVDQ------PGGNKKTLILQEI 480 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~----------------t~~~~~~~~~vd~------~g~~~~~~i~d~~ 480 (670)
+|+|+|..++|||||+.+|+......... . |+........... .|....+.+||++
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998654221110 0 0001010111221 1336678899999
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~ 546 (670)
|++.|... ...+++.+|++++|+|++++.+.+. ...+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~--~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSE--VTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHH--HHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence 99888876 7888999999999999999876553 3333333332 68999999999986
No 497
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.34 E-value=4.4e-12 Score=128.07 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCC-------------cccceEEEEEEcCCCceEEEEEecCChhhHh
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFS-----ENYAPT-------------TGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t-------------~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~ 486 (670)
+|+|+|.+|+|||||+++|+..... .+..++ ++.......+.+ +...+.++|++|...+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 4899999999999999999742211 111111 011111222333 34677789999987766
Q ss_pred hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-
Q 005908 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 565 (670)
Q Consensus 487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~- 565 (670)
.. +..+++.+|++++|+|++++.. ......+..+... ++|+++++||+|+.... .....+++...++..
T Consensus 79 ~~--~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 79 IE--VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADRY------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP 148 (270)
T ss_pred HH--HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence 55 6788999999999999998754 2234444444443 69999999999987522 223344455555543
Q ss_pred --CcEEeecccC--ChHHHH
Q 005908 566 --PPIPVSMKSK--DLNNVF 581 (670)
Q Consensus 566 --~~~~vSA~~g--~v~~l~ 581 (670)
.++++||..+ |+-+++
T Consensus 149 ~~~~~Pisa~~~f~g~vd~~ 168 (270)
T cd01886 149 VPLQLPIGEEDDFRGVVDLI 168 (270)
T ss_pred eEEEeccccCCCceEEEEcc
Confidence 4689999876 655555
No 498
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.34 E-value=5.4e-11 Score=126.13 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeE-----eCCc-----------------cc-CCceeEEEEeCCC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR-----LPPD-----------------FY-PDRVPVTIIDTSS 68 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~-----~~~~-----------------~~-~~~~~~~i~Dt~G 68 (670)
++|+|||.||||||||+|+|++..+.. ++|.+..... .... .. .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999887543 2432221111 1100 00 1236789999999
Q ss_pred Ccc----chhhhHHH---hccCCEEEEEEECC
Q 005908 69 SLE----NKGKLNEE---LKRADAVVLTYACN 93 (670)
Q Consensus 69 ~~~----~~~~~~~~---~~~ad~ii~v~d~~ 93 (670)
... ...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 23333344 89999999999996
No 499
>PLN03127 Elongation factor Tu; Provisional
Probab=99.33 E-value=4.5e-11 Score=129.05 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=102.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCC----------CCcccceEEEEEEcCCCceEEEEEecCChh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~----------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~ 483 (670)
.+..++|+++|..++|||||+++|.+ ......+. ..++.+. ....+..+...+.++|++|+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence 45679999999999999999999973 22111110 1111122 223333244577889999987
Q ss_pred hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCcccH----HHHHHH
Q 005908 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARV 558 (670)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~~~~~~ 558 (670)
.|-.. ....+..+|++++|+|++++.. .+..+.+..+... ++| +|+++||+|+.+..... .++.++
T Consensus 136 ~f~~~--~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 136 DYVKN--MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred chHHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 76553 4556678999999999988744 3334444444443 688 57889999998633222 233344
Q ss_pred HHHhCC----CCcEEeecc---cC-C-------hHHHHHHHHHHHhCC
Q 005908 559 TQELGI----EPPIPVSMK---SK-D-------LNNVFSRIIWAAEHP 591 (670)
Q Consensus 559 ~~~~~~----~~~~~vSA~---~g-~-------v~~l~~~l~~~~~~~ 591 (670)
...+++ .|++++||. +| | +.+|++.+.+.+..+
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 444443 368888876 45 5 678888887766533
No 500
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.33 E-value=3.7e-11 Score=132.04 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------C-C-C----------cccceEEEEEEcCCCceEEEEEecCC
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------A-P-T----------TGEQYAVNVVDQPGGNKKTLILQEIP 481 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~-~-t----------~~~~~~~~~vd~~g~~~~~~i~d~~g 481 (670)
+..+|+|+|.+|+|||||+++|+...-.... . . + .+..+....+.+..+...+.+||++|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3468999999999999999999732111100 0 0 0 11122223333333456788999999
Q ss_pred hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+..|... ...+++.+|++|+|+|++++.. .....++...... ++|+++++||+|+..
T Consensus 89 ~~df~~~--~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~------~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSED--TYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLR------DTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHH--HHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence 9887765 6778899999999999998754 2334444444333 799999999999864
Done!