Query 005908
Match_columns 670
No_of_seqs 742 out of 5140
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 7.5E-40 2.6E-44 355.1 21.4 325 12-595 3-354 (436)
2 4dcu_A GTP-binding protein ENG 100.0 2.5E-38 8.4E-43 345.2 22.0 329 9-596 20-375 (456)
3 1mky_A Probable GTP-binding pr 100.0 2E-37 7E-42 336.3 27.1 330 13-595 2-360 (439)
4 4dkx_A RAS-related protein RAB 100.0 2.2E-30 7.4E-35 252.8 17.3 163 422-590 12-176 (216)
5 4dkx_A RAS-related protein RAB 100.0 3.1E-29 1.1E-33 244.6 17.1 172 1-177 1-176 (216)
6 2atx_A Small GTP binding prote 99.9 1.4E-25 4.7E-30 215.9 19.6 172 4-178 10-194 (194)
7 3reg_A RHO-like small GTPase; 99.9 1.7E-25 5.8E-30 215.3 17.1 170 9-179 20-190 (194)
8 3q3j_B RHO-related GTP-binding 99.9 1.1E-25 3.9E-30 220.1 15.4 172 6-180 21-206 (214)
9 3ihw_A Centg3; RAS, centaurin, 99.9 3.3E-25 1.1E-29 211.4 18.1 163 5-176 13-179 (184)
10 3bwd_D RAC-like GTP-binding pr 99.9 1.8E-25 6E-30 212.5 14.5 170 8-178 4-182 (182)
11 2iwr_A Centaurin gamma 1; ANK 99.9 6.6E-25 2.2E-29 207.9 18.3 160 8-176 3-168 (178)
12 1c1y_A RAS-related protein RAP 99.9 7.2E-25 2.5E-29 204.9 17.8 162 11-176 2-166 (167)
13 1m7b_A RND3/RHOE small GTP-bin 99.9 3.3E-25 1.1E-29 211.4 15.3 166 9-177 4-183 (184)
14 2j0v_A RAC-like GTP-binding pr 99.9 5E-25 1.7E-29 215.2 16.8 173 6-179 3-182 (212)
15 1mh1_A RAC1; GTP-binding, GTPa 99.9 8.2E-25 2.8E-29 208.5 17.2 168 9-179 2-182 (186)
16 3q3j_B RHO-related GTP-binding 99.9 8.3E-25 2.9E-29 213.9 17.6 169 419-594 23-207 (214)
17 3kkq_A RAS-related protein M-R 99.9 1.7E-24 5.7E-29 206.0 18.9 165 7-176 13-181 (183)
18 1g16_A RAS-related protein SEC 99.9 1.9E-24 6.6E-29 202.7 18.9 163 422-590 2-165 (170)
19 3c5c_A RAS-like protein 12; GD 99.9 6.7E-25 2.3E-29 209.8 15.8 163 8-176 17-185 (187)
20 3q72_A GTP-binding protein RAD 99.9 1.1E-24 3.6E-29 203.8 16.8 161 11-176 1-163 (166)
21 2j1l_A RHO-related GTP-binding 99.9 4.9E-25 1.7E-29 215.6 14.8 167 9-178 31-210 (214)
22 3cbq_A GTP-binding protein REM 99.9 1.8E-24 6.3E-29 208.3 18.5 168 420-592 20-190 (195)
23 3t5g_A GTP-binding protein RHE 99.9 1.9E-24 6.4E-29 205.3 17.8 169 421-595 4-174 (181)
24 2hup_A RAS-related protein RAB 99.9 1.3E-24 4.3E-29 210.5 16.9 168 418-590 24-193 (201)
25 3t5g_A GTP-binding protein RHE 99.9 1.4E-24 4.8E-29 206.2 16.9 167 9-180 3-172 (181)
26 1u8z_A RAS-related protein RAL 99.9 1.7E-24 5.7E-29 202.4 17.1 162 10-176 2-166 (168)
27 2q3h_A RAS homolog gene family 99.9 1.4E-24 4.7E-29 210.1 16.9 167 8-177 16-195 (201)
28 2nzj_A GTP-binding protein REM 99.9 3.3E-24 1.1E-28 202.2 19.0 162 10-176 2-168 (175)
29 1z0f_A RAB14, member RAS oncog 99.9 2.2E-24 7.6E-29 204.0 17.8 164 8-176 11-177 (179)
30 2gco_A H9, RHO-related GTP-bin 99.9 2.6E-24 9E-29 208.2 18.6 164 10-176 23-199 (201)
31 2ew1_A RAS-related protein RAB 99.9 1.2E-24 4.2E-29 210.5 16.1 166 6-176 20-188 (201)
32 2hup_A RAS-related protein RAB 99.9 1.4E-24 4.8E-29 210.2 16.5 167 7-177 24-193 (201)
33 3reg_A RHO-like small GTPase; 99.9 4.2E-24 1.4E-28 205.5 19.4 166 420-592 20-190 (194)
34 1gwn_A RHO-related GTP-binding 99.9 8.5E-25 2.9E-29 212.3 14.6 165 9-176 25-203 (205)
35 3cbq_A GTP-binding protein REM 99.9 2.4E-24 8.4E-29 207.4 17.6 165 9-178 20-189 (195)
36 3tw8_B RAS-related protein RAB 99.9 4.3E-24 1.5E-28 202.4 18.9 164 420-590 6-171 (181)
37 1z0j_A RAB-22, RAS-related pro 99.9 3.2E-24 1.1E-28 201.1 17.7 162 10-176 4-168 (170)
38 3oes_A GTPase rhebl1; small GT 99.9 8.8E-25 3E-29 211.6 14.3 170 5-179 17-189 (201)
39 3kkq_A RAS-related protein M-R 99.9 5.2E-24 1.8E-28 202.6 19.3 164 420-589 15-181 (183)
40 2g3y_A GTP-binding protein GEM 99.9 2.3E-24 8E-29 209.5 17.2 164 8-176 33-202 (211)
41 2ew1_A RAS-related protein RAB 99.9 3.6E-24 1.2E-28 207.1 18.5 164 420-589 23-188 (201)
42 2g6b_A RAS-related protein RAB 99.9 6.6E-24 2.2E-28 201.2 19.9 168 420-593 7-177 (180)
43 2bov_A RAla, RAS-related prote 99.9 4.7E-24 1.6E-28 207.0 19.1 165 7-176 9-176 (206)
44 2gf9_A RAS-related protein RAB 99.9 4.1E-24 1.4E-28 204.7 18.4 164 8-176 18-184 (189)
45 3tkl_A RAS-related protein RAB 99.9 5.2E-24 1.8E-28 204.9 19.1 166 420-591 13-180 (196)
46 1r2q_A RAS-related protein RAB 99.9 3.2E-24 1.1E-28 201.1 17.1 162 10-176 4-168 (170)
47 4gzl_A RAS-related C3 botulinu 99.9 9.4E-25 3.2E-29 211.9 13.9 166 9-175 27-203 (204)
48 2a5j_A RAS-related protein RAB 99.9 3.9E-24 1.3E-28 205.2 18.1 168 4-176 13-183 (191)
49 2a9k_A RAS-related protein RAL 99.9 2.9E-24 1E-28 204.8 17.0 166 6-176 12-180 (187)
50 1kao_A RAP2A; GTP-binding prot 99.9 2.5E-24 8.6E-29 201.0 16.1 161 11-176 2-165 (167)
51 3tw8_B RAS-related protein RAB 99.9 2.1E-24 7.3E-29 204.6 15.9 164 8-176 5-170 (181)
52 1z08_A RAS-related protein RAB 99.9 4.5E-24 1.5E-28 200.2 17.8 164 421-590 4-169 (170)
53 1z2a_A RAS-related protein RAB 99.9 3E-24 1E-28 200.9 16.3 162 10-176 3-166 (168)
54 3q85_A GTP-binding protein REM 99.9 3.6E-24 1.2E-28 200.8 16.7 163 423-590 2-167 (169)
55 2efe_B Small GTP-binding prote 99.9 7.5E-24 2.6E-28 201.0 19.1 165 8-177 8-175 (181)
56 3bc1_A RAS-related protein RAB 99.9 5.7E-24 1.9E-28 204.1 18.4 169 3-176 2-184 (195)
57 2il1_A RAB12; G-protein, GDP, 99.9 1.8E-24 6.1E-29 207.8 14.8 165 8-176 22-189 (192)
58 2a5j_A RAS-related protein RAB 99.9 5.9E-24 2E-28 203.9 18.3 164 420-589 18-183 (191)
59 2g3y_A GTP-binding protein GEM 99.9 7.9E-24 2.7E-28 205.8 19.1 165 420-589 34-202 (211)
60 1zbd_A Rabphilin-3A; G protein 99.9 9.1E-24 3.1E-28 204.6 19.5 163 9-176 5-170 (203)
61 2fg5_A RAB-22B, RAS-related pr 99.9 3.9E-24 1.3E-28 205.4 16.8 164 9-177 20-186 (192)
62 2efe_B Small GTP-binding prote 99.9 1E-23 3.6E-28 200.0 19.5 165 420-590 9-175 (181)
63 3oes_A GTPase rhebl1; small GT 99.9 2.4E-24 8.1E-29 208.5 15.3 168 419-592 20-189 (201)
64 2fv8_A H6, RHO-related GTP-bin 99.9 4.6E-24 1.6E-28 207.5 17.2 166 10-178 23-201 (207)
65 1z0f_A RAB14, member RAS oncog 99.9 8.6E-24 2.9E-28 200.0 18.7 164 420-589 12-177 (179)
66 2hxs_A RAB-26, RAS-related pro 99.9 1.7E-24 5.7E-29 204.9 13.7 165 9-178 3-174 (178)
67 1ek0_A Protein (GTP-binding pr 99.9 5.7E-24 2E-28 199.3 17.2 160 11-175 2-167 (170)
68 3q85_A GTP-binding protein REM 99.9 2.9E-24 9.9E-29 201.4 15.2 160 12-176 2-166 (169)
69 2y8e_A RAB-protein 6, GH09086P 99.9 3.6E-24 1.2E-28 202.6 15.8 171 1-176 3-176 (179)
70 3gj0_A GTP-binding nuclear pro 99.9 2.8E-24 9.6E-29 211.3 15.5 172 1-179 4-177 (221)
71 1z08_A RAS-related protein RAB 99.9 3.5E-24 1.2E-28 200.9 15.5 163 9-176 3-168 (170)
72 1r2q_A RAS-related protein RAB 99.9 5.9E-24 2E-28 199.2 16.9 163 421-589 4-168 (170)
73 2g6b_A RAS-related protein RAB 99.9 9E-24 3.1E-28 200.2 18.4 168 6-178 4-175 (180)
74 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.6E-23 5.5E-28 197.9 20.0 168 421-590 5-174 (177)
75 1c1y_A RAS-related protein RAP 99.9 8.5E-24 2.9E-28 197.6 17.9 162 423-589 3-166 (167)
76 2oil_A CATX-8, RAS-related pro 99.9 6.7E-24 2.3E-28 203.8 17.6 166 6-176 19-187 (193)
77 2gf9_A RAS-related protein RAB 99.9 8E-24 2.7E-28 202.6 18.1 164 420-589 19-184 (189)
78 2atx_A Small GTP binding prote 99.9 1.4E-23 4.9E-28 201.7 19.9 163 421-590 16-193 (194)
79 3tkl_A RAS-related protein RAB 99.9 1.3E-23 4.3E-28 202.2 19.3 165 9-178 13-180 (196)
80 1z2a_A RAS-related protein RAB 99.9 7.6E-24 2.6E-28 198.1 17.3 162 421-589 3-166 (168)
81 2bcg_Y Protein YP2, GTP-bindin 99.9 1.6E-23 5.5E-28 203.5 20.2 164 421-590 6-171 (206)
82 1zbd_A Rabphilin-3A; G protein 99.9 1.9E-23 6.5E-28 202.4 20.5 163 421-589 6-170 (203)
83 1z0j_A RAB-22, RAS-related pro 99.9 1.3E-23 4.5E-28 196.9 18.8 162 422-589 5-168 (170)
84 1x3s_A RAS-related protein RAB 99.9 9.3E-24 3.2E-28 202.9 18.1 166 421-591 13-179 (195)
85 2fu5_C RAS-related protein RAB 99.9 2.6E-24 9.1E-29 204.7 14.0 163 421-589 6-170 (183)
86 2erx_A GTP-binding protein DI- 99.9 4.9E-24 1.7E-28 200.2 15.5 161 11-176 2-166 (172)
87 2p5s_A RAS and EF-hand domain 99.9 5.6E-24 1.9E-28 205.6 16.3 167 6-177 22-197 (199)
88 2nzj_A GTP-binding protein REM 99.9 1.7E-23 5.7E-28 197.3 19.2 163 422-590 3-169 (175)
89 3dz8_A RAS-related protein RAB 99.9 2.8E-24 9.5E-29 206.2 13.9 165 420-590 20-186 (191)
90 2fn4_A P23, RAS-related protei 99.9 1.1E-23 3.6E-28 199.8 17.8 165 8-177 5-172 (181)
91 1ek0_A Protein (GTP-binding pr 99.9 9.5E-24 3.3E-28 197.8 17.1 161 423-589 3-168 (170)
92 1z06_A RAS-related protein RAB 99.9 6.6E-24 2.3E-28 203.2 16.3 165 7-176 15-187 (189)
93 2il1_A RAB12; G-protein, GDP, 99.9 6.3E-24 2.1E-28 204.0 16.1 165 420-589 23-189 (192)
94 2atv_A RERG, RAS-like estrogen 99.9 7E-24 2.4E-28 204.3 16.4 164 7-176 23-190 (196)
95 4dsu_A GTPase KRAS, isoform 2B 99.9 2.2E-23 7.7E-28 199.1 19.8 163 422-590 3-166 (189)
96 2o52_A RAS-related protein RAB 99.9 7.7E-24 2.6E-28 204.8 16.7 165 420-590 22-188 (200)
97 2fn4_A P23, RAS-related protei 99.9 8.6E-24 2.9E-28 200.4 16.7 167 420-592 6-174 (181)
98 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.2E-23 4.2E-28 198.7 17.7 164 9-177 4-174 (177)
99 3cph_A RAS-related protein SEC 99.9 1.9E-23 6.6E-28 203.8 19.6 164 420-589 17-181 (213)
100 2fg5_A RAB-22B, RAS-related pr 99.9 1.1E-23 3.8E-28 202.2 17.5 164 420-589 20-185 (192)
101 2bme_A RAB4A, RAS-related prot 99.9 1.2E-23 4.2E-28 200.5 17.7 165 420-590 7-173 (186)
102 3clv_A RAB5 protein, putative; 99.9 3.1E-23 1.1E-27 200.7 20.9 161 421-589 5-203 (208)
103 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-23 3.9E-28 200.7 17.2 161 419-590 16-180 (184)
104 3dz8_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 208.1 10.9 164 9-177 20-186 (191)
105 1m7b_A RND3/RHOE small GTP-bin 99.9 1.2E-23 4.1E-28 200.5 17.2 162 421-589 5-182 (184)
106 1kao_A RAP2A; GTP-binding prot 99.9 1E-23 3.5E-28 196.8 16.3 161 423-589 3-165 (167)
107 2bcg_Y Protein YP2, GTP-bindin 99.9 1.8E-23 6.1E-28 203.1 18.6 164 9-177 5-171 (206)
108 3q72_A GTP-binding protein RAD 99.9 1.3E-23 4.3E-28 196.4 16.6 161 423-590 2-164 (166)
109 2hxs_A RAB-26, RAS-related pro 99.9 4E-24 1.4E-28 202.3 13.4 169 421-592 4-175 (178)
110 2fu5_C RAS-related protein RAB 99.9 2.4E-24 8.3E-29 204.9 11.9 163 9-176 5-170 (183)
111 2ce2_X GTPase HRAS; signaling 99.9 2.5E-23 8.5E-28 193.9 18.5 160 11-176 2-164 (166)
112 2oil_A CATX-8, RAS-related pro 99.9 1.3E-23 4.5E-28 201.7 17.1 166 418-589 20-187 (193)
113 3clv_A RAB5 protein, putative; 99.9 4.4E-23 1.5E-27 199.7 20.8 162 8-176 3-203 (208)
114 3bc1_A RAS-related protein RAB 99.9 4.2E-23 1.4E-27 198.0 20.5 165 420-589 8-184 (195)
115 4bas_A ADP-ribosylation factor 99.9 1E-23 3.5E-28 203.4 16.1 167 3-177 8-189 (199)
116 1ky3_A GTP-binding protein YPT 99.9 1.1E-23 3.6E-28 199.9 15.8 165 9-176 5-177 (182)
117 2p5s_A RAS and EF-hand domain 99.9 1.2E-23 4E-28 203.3 16.3 165 420-590 25-197 (199)
118 4dsu_A GTPase KRAS, isoform 2B 99.9 2.6E-23 9E-28 198.6 18.5 161 10-176 2-165 (189)
119 2j0v_A RAC-like GTP-binding pr 99.9 1E-23 3.4E-28 205.9 15.8 166 421-593 7-183 (212)
120 1u8z_A RAS-related protein RAL 99.9 2.2E-23 7.4E-28 194.8 17.4 163 422-590 3-167 (168)
121 3cpj_B GTP-binding protein YPT 99.9 9E-24 3.1E-28 208.0 15.4 166 9-179 10-178 (223)
122 1z06_A RAS-related protein RAB 99.9 2.9E-23 1E-27 198.7 18.5 165 420-589 17-187 (189)
123 1g16_A RAS-related protein SEC 99.9 1.6E-23 5.5E-28 196.3 16.3 161 11-177 2-165 (170)
124 1x3s_A RAS-related protein RAB 99.9 2.1E-23 7.3E-28 200.4 17.6 164 9-178 12-179 (195)
125 1vg8_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 200.8 19.4 167 421-589 6-174 (207)
126 3t1o_A Gliding protein MGLA; G 99.9 6.4E-24 2.2E-28 204.4 13.7 170 1-177 3-192 (198)
127 3cpj_B GTP-binding protein YPT 99.9 1.7E-23 5.9E-28 206.0 16.8 167 420-592 10-178 (223)
128 2bme_A RAB4A, RAS-related prot 99.9 2E-23 6.8E-28 199.1 16.8 163 9-176 7-172 (186)
129 2iwr_A Centaurin gamma 1; ANK 99.9 2.7E-23 9.2E-28 196.7 17.4 160 421-589 5-168 (178)
130 3con_A GTPase NRAS; structural 99.9 2.4E-23 8.3E-28 199.3 17.3 164 7-176 16-182 (190)
131 3c5c_A RAS-like protein 12; GD 99.9 1.2E-23 4.2E-28 201.0 15.1 164 421-589 19-185 (187)
132 2o52_A RAS-related protein RAB 99.9 1E-23 3.5E-28 203.9 14.5 163 9-176 22-187 (200)
133 2y8e_A RAB-protein 6, GH09086P 99.9 2.1E-23 7.2E-28 197.3 16.3 162 422-589 13-176 (179)
134 1ky3_A GTP-binding protein YPT 99.9 5.8E-23 2E-27 194.8 19.2 167 421-589 6-177 (182)
135 2bov_A RAla, RAS-related prote 99.9 5.1E-23 1.7E-27 199.6 18.8 165 420-590 11-177 (206)
136 2ce2_X GTPase HRAS; signaling 99.9 7.9E-23 2.7E-27 190.4 19.2 162 423-590 3-165 (166)
137 2cjw_A GTP-binding protein GEM 99.9 3.8E-23 1.3E-27 198.5 17.4 164 421-589 4-171 (192)
138 2q3h_A RAS homolog gene family 99.9 2.7E-23 9.2E-28 201.0 16.5 165 419-590 16-195 (201)
139 4djt_A GTP-binding nuclear pro 99.9 9.4E-24 3.2E-28 207.0 13.3 171 7-182 6-180 (218)
140 2yc2_C IFT27, small RAB-relate 99.9 6.5E-24 2.2E-28 206.2 12.0 162 10-176 18-191 (208)
141 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.6E-23 1.6E-27 196.4 17.6 164 422-592 4-182 (186)
142 1gwn_A RHO-related GTP-binding 99.9 2.9E-23 9.9E-28 201.5 16.4 162 421-589 26-203 (205)
143 3bwd_D RAC-like GTP-binding pr 99.9 6.7E-24 2.3E-28 201.5 11.5 163 421-590 6-181 (182)
144 2j1l_A RHO-related GTP-binding 99.9 2.8E-23 9.6E-28 203.1 16.1 164 421-591 32-210 (214)
145 2gf0_A GTP-binding protein DI- 99.9 2.5E-23 8.6E-28 200.6 15.5 165 9-179 5-173 (199)
146 1upt_A ARL1, ADP-ribosylation 99.9 4.4E-23 1.5E-27 193.6 16.7 163 8-177 3-169 (171)
147 2gco_A H9, RHO-related GTP-bin 99.9 7.8E-23 2.7E-27 197.9 18.9 163 420-589 22-199 (201)
148 3con_A GTPase NRAS; structural 99.9 8.6E-23 2.9E-27 195.5 18.9 163 422-590 20-183 (190)
149 1vg8_A RAS-related protein RAB 99.9 3.4E-23 1.2E-27 201.1 16.2 163 9-176 5-174 (207)
150 1r8s_A ADP-ribosylation factor 99.9 4.3E-23 1.5E-27 192.4 16.1 157 13-176 1-161 (164)
151 3cph_A RAS-related protein SEC 99.9 6.8E-23 2.3E-27 199.9 17.9 163 8-176 16-181 (213)
152 2f7s_A C25KG, RAS-related prot 99.9 2.6E-23 8.9E-28 203.7 14.9 166 419-589 21-198 (217)
153 2cjw_A GTP-binding protein GEM 99.9 5.8E-23 2E-27 197.2 16.9 162 10-176 4-171 (192)
154 1f6b_A SAR1; gtpases, N-termin 99.9 3.1E-23 1.1E-27 200.1 14.9 158 9-174 22-196 (198)
155 2a9k_A RAS-related protein RAL 99.9 6.9E-23 2.4E-27 195.2 17.1 164 421-590 16-181 (187)
156 4gzl_A RAS-related C3 botulinu 99.9 4.3E-23 1.5E-27 200.2 15.5 161 421-588 28-203 (204)
157 1zj6_A ADP-ribosylation factor 99.9 9.4E-23 3.2E-27 194.8 17.6 164 10-180 14-181 (187)
158 1zd9_A ADP-ribosylation factor 99.9 4E-23 1.4E-27 197.6 14.9 162 9-176 19-184 (188)
159 1m2o_B GTP-binding protein SAR 99.9 6.1E-23 2.1E-27 196.7 15.7 158 9-174 20-189 (190)
160 2h17_A ADP-ribosylation factor 99.9 1.8E-23 6.1E-28 198.7 11.8 165 3-174 12-180 (181)
161 4djt_A GTP-binding nuclear pro 99.9 5.1E-23 1.8E-27 201.7 15.3 169 421-595 9-180 (218)
162 2fv8_A H6, RHO-related GTP-bin 99.9 1E-22 3.5E-27 198.0 17.3 166 421-593 23-203 (207)
163 2f7s_A C25KG, RAS-related prot 99.9 2E-23 7E-28 204.4 12.2 163 9-176 22-198 (217)
164 2gf0_A GTP-binding protein DI- 99.9 1E-22 3.5E-27 196.3 16.4 169 421-594 6-175 (199)
165 2yc2_C IFT27, small RAB-relate 99.9 4.4E-23 1.5E-27 200.3 13.8 166 421-589 18-191 (208)
166 2h57_A ADP-ribosylation factor 99.9 7.1E-23 2.4E-27 196.2 15.0 163 7-176 16-186 (190)
167 1ksh_A ARF-like protein 2; sma 99.9 9.7E-23 3.3E-27 194.4 15.6 161 10-177 16-180 (186)
168 1fzq_A ADP-ribosylation factor 99.9 4.5E-23 1.6E-27 196.0 13.1 160 10-176 14-177 (181)
169 2erx_A GTP-binding protein DI- 99.9 9E-23 3.1E-27 191.5 14.8 166 422-592 2-169 (172)
170 3gj0_A GTP-binding nuclear pro 99.9 6.8E-23 2.3E-27 201.4 14.0 164 420-591 12-176 (221)
171 2b6h_A ADP-ribosylation factor 99.9 6.3E-23 2.1E-27 197.0 13.2 161 9-176 26-190 (192)
172 3l0i_B RAS-related protein RAB 99.9 1.8E-24 6.3E-29 209.0 2.3 165 420-590 30-196 (199)
173 3llu_A RAS-related GTP-binding 99.9 8.2E-23 2.8E-27 196.8 13.3 167 5-175 13-195 (196)
174 2fh5_B SR-beta, signal recogni 99.9 3E-22 1E-26 195.7 17.4 162 9-174 4-213 (214)
175 1zd9_A ADP-ribosylation factor 99.9 4.4E-22 1.5E-26 190.3 17.5 160 419-590 18-185 (188)
176 2atv_A RERG, RAS-like estrogen 99.9 3E-22 1E-26 192.8 16.3 162 421-589 26-190 (196)
177 3th5_A RAS-related C3 botulinu 99.8 1.8E-24 6.1E-29 209.9 0.0 166 9-175 27-203 (204)
178 1zj6_A ADP-ribosylation factor 99.9 3.4E-22 1.2E-26 190.9 15.8 163 421-594 14-182 (187)
179 1upt_A ARL1, ADP-ribosylation 99.9 9.9E-22 3.4E-26 184.3 18.6 161 420-590 4-169 (171)
180 4bas_A ADP-ribosylation factor 99.9 4.9E-22 1.7E-26 191.5 16.5 165 420-591 14-190 (199)
181 3l0i_B RAS-related protein RAB 99.9 5.1E-24 1.7E-28 205.8 1.7 163 9-176 30-195 (199)
182 1ksh_A ARF-like protein 2; sma 99.9 1.3E-21 4.5E-26 186.5 18.1 160 421-591 16-181 (186)
183 2x77_A ADP-ribosylation factor 99.9 1.9E-22 6.4E-27 193.0 12.1 161 10-177 20-184 (189)
184 2wkq_A NPH1-1, RAS-related C3 99.9 4.1E-22 1.4E-26 208.4 15.8 166 10-178 153-331 (332)
185 2h57_A ADP-ribosylation factor 99.9 1.1E-21 3.7E-26 187.9 17.4 162 421-590 19-187 (190)
186 1f6b_A SAR1; gtpases, N-termin 99.9 7.2E-22 2.5E-26 190.6 15.9 157 421-587 23-196 (198)
187 1r8s_A ADP-ribosylation factor 99.9 1.1E-21 3.8E-26 182.8 16.4 153 424-589 1-161 (164)
188 3t1o_A Gliding protein MGLA; G 99.9 1.7E-22 5.7E-27 194.5 11.1 162 421-590 12-192 (198)
189 1m2o_B GTP-binding protein SAR 99.9 1E-21 3.5E-26 188.2 16.2 157 421-587 21-189 (190)
190 2wji_A Ferrous iron transport 99.9 5.4E-22 1.8E-26 185.5 13.5 153 11-175 2-163 (165)
191 1moz_A ARL1, ADP-ribosylation 99.9 2.1E-22 7.3E-27 191.3 10.8 159 10-176 16-179 (183)
192 2zej_A Dardarin, leucine-rich 99.9 1.2E-22 4.1E-27 193.6 9.0 164 12-177 2-178 (184)
193 1fzq_A ADP-ribosylation factor 99.9 1E-21 3.6E-26 186.5 14.8 157 421-590 14-178 (181)
194 2h17_A ADP-ribosylation factor 99.9 1.4E-21 4.7E-26 185.7 15.2 157 420-587 18-180 (181)
195 3o47_A ADP-ribosylation factor 99.9 6.4E-22 2.2E-26 205.9 14.0 159 9-177 162-327 (329)
196 2lkc_A Translation initiation 99.9 1.5E-21 5.3E-26 184.4 15.3 160 8-176 4-170 (178)
197 3iev_A GTP-binding protein ERA 99.9 6.3E-21 2.2E-25 196.6 19.6 174 5-185 3-189 (308)
198 2b6h_A ADP-ribosylation factor 99.9 2E-21 7E-26 186.4 14.8 156 421-589 27-190 (192)
199 2zej_A Dardarin, leucine-rich 99.9 6.7E-22 2.3E-26 188.4 10.8 163 423-591 2-179 (184)
200 2wji_A Ferrous iron transport 99.9 3.4E-21 1.2E-25 180.0 14.3 152 423-588 3-163 (165)
201 1moz_A ARL1, ADP-ribosylation 99.9 4.8E-21 1.6E-25 181.9 15.4 159 421-589 16-179 (183)
202 2x77_A ADP-ribosylation factor 99.9 4E-21 1.4E-25 183.7 14.9 161 421-591 20-185 (189)
203 2qu8_A Putative nucleolar GTP- 99.9 4E-21 1.4E-25 189.7 15.3 165 10-176 27-204 (228)
204 2wkq_A NPH1-1, RAS-related C3 99.9 6E-21 2E-25 199.6 17.0 165 420-591 152-331 (332)
205 1svi_A GTP-binding protein YSX 99.8 3.5E-21 1.2E-25 185.0 13.2 162 6-175 17-193 (195)
206 3th5_A RAS-related C3 botulinu 99.8 4.8E-23 1.6E-27 199.8 0.0 161 421-588 28-203 (204)
207 3lvq_E ARF-GAP with SH3 domain 99.8 4.2E-21 1.5E-25 212.0 15.0 162 9-180 319-487 (497)
208 2f9l_A RAB11B, member RAS onco 99.8 2.6E-20 8.9E-25 179.7 18.1 163 421-589 3-167 (199)
209 3iev_A GTP-binding protein ERA 99.8 4.7E-20 1.6E-24 190.1 20.8 167 420-596 7-188 (308)
210 3r7w_A Gtpase1, GTP-binding pr 99.8 7E-21 2.4E-25 196.3 14.3 161 11-176 2-180 (307)
211 2wjg_A FEOB, ferrous iron tran 99.8 7.4E-21 2.5E-25 181.5 12.8 160 8-179 3-171 (188)
212 3a1s_A Iron(II) transport prot 99.8 1.6E-20 5.5E-25 188.3 15.3 156 10-177 3-167 (258)
213 3pqc_A Probable GTP-binding pr 99.8 1.3E-20 4.3E-25 180.8 13.9 166 4-176 15-193 (195)
214 2gj8_A MNME, tRNA modification 99.8 7E-21 2.4E-25 179.2 11.7 153 10-176 2-165 (172)
215 3c5h_A Glucocorticoid receptor 99.8 1.3E-21 4.4E-26 196.4 6.8 164 420-589 16-254 (255)
216 3b1v_A Ferrous iron uptake tra 99.8 1.9E-20 6.4E-25 188.9 15.2 152 12-176 3-163 (272)
217 3dpu_A RAB family protein; roc 99.8 6.5E-20 2.2E-24 203.9 20.7 164 8-179 37-210 (535)
218 3c5h_A Glucocorticoid receptor 99.8 5.4E-21 1.9E-25 191.9 10.7 162 8-175 15-253 (255)
219 4dhe_A Probable GTP-binding pr 99.8 9.2E-21 3.1E-25 186.3 11.9 168 7-179 24-213 (223)
220 2dyk_A GTP-binding protein; GT 99.8 1.9E-20 6.5E-25 173.7 13.2 150 13-175 2-160 (161)
221 2fh5_B SR-beta, signal recogni 99.8 4.3E-20 1.5E-24 180.3 16.4 162 421-587 5-213 (214)
222 2lkc_A Translation initiation 99.8 3.5E-20 1.2E-24 175.0 15.0 161 420-593 5-174 (178)
223 3llu_A RAS-related GTP-binding 99.8 1.8E-20 6.1E-25 180.4 12.8 160 419-588 16-195 (196)
224 1oix_A RAS-related protein RAB 99.8 6.4E-20 2.2E-24 175.8 16.3 162 421-588 27-190 (191)
225 2f9l_A RAB11B, member RAS onco 99.8 8.4E-20 2.9E-24 176.1 17.2 161 11-176 4-167 (199)
226 3r7w_B Gtpase2, GTP-binding pr 99.8 5E-21 1.7E-25 194.7 8.9 158 14-177 1-174 (331)
227 3o47_A ADP-ribosylation factor 99.8 3.7E-20 1.3E-24 192.6 15.5 157 421-590 163-327 (329)
228 1wf3_A GTP-binding protein; GT 99.8 9.9E-20 3.4E-24 186.5 18.0 158 10-176 5-172 (301)
229 2cxx_A Probable GTP-binding pr 99.8 1.7E-20 5.7E-25 179.3 11.1 156 13-178 2-185 (190)
230 1oix_A RAS-related protein RAB 99.8 1.3E-19 4.6E-24 173.5 17.1 161 10-175 27-190 (191)
231 3lvq_E ARF-GAP with SH3 domain 99.8 7.2E-20 2.5E-24 202.1 17.4 165 420-597 319-491 (497)
232 3gee_A MNME, tRNA modification 99.8 4.9E-20 1.7E-24 199.7 15.3 203 10-222 231-449 (476)
233 3iby_A Ferrous iron transport 99.8 2.7E-20 9.3E-25 186.3 12.2 150 13-174 2-164 (256)
234 2dyk_A GTP-binding protein; GT 99.8 9.5E-20 3.2E-24 168.9 14.3 150 424-588 2-160 (161)
235 1svi_A GTP-binding protein YSX 99.8 1.7E-19 5.9E-24 173.1 16.6 157 421-589 21-194 (195)
236 3r7w_A Gtpase1, GTP-binding pr 99.8 1.2E-19 4.1E-24 187.0 16.3 161 422-588 2-179 (307)
237 2wjg_A FEOB, ferrous iron tran 99.8 6.1E-20 2.1E-24 175.2 12.6 157 422-592 6-171 (188)
238 3i8s_A Ferrous iron transport 99.8 5.7E-20 2E-24 186.2 12.8 156 11-178 2-170 (274)
239 3a1s_A Iron(II) transport prot 99.8 9.9E-20 3.4E-24 182.6 14.4 159 421-591 3-168 (258)
240 3gee_A MNME, tRNA modification 99.8 1.6E-19 5.4E-24 195.7 17.0 187 421-619 231-426 (476)
241 2qu8_A Putative nucleolar GTP- 99.8 2.7E-19 9.4E-24 176.5 16.6 161 421-590 27-205 (228)
242 2cxx_A Probable GTP-binding pr 99.8 6.1E-20 2.1E-24 175.3 11.5 155 424-590 2-184 (190)
243 3k53_A Ferrous iron transport 99.8 2E-19 6.7E-24 182.3 14.7 158 11-179 2-168 (271)
244 2gj8_A MNME, tRNA modification 99.8 7.6E-20 2.6E-24 172.1 10.9 155 422-589 3-165 (172)
245 3i8s_A Ferrous iron transport 99.8 9E-20 3.1E-24 184.8 11.8 157 423-591 3-170 (274)
246 3iby_A Ferrous iron transport 99.8 6.6E-20 2.3E-24 183.5 9.8 150 424-587 2-164 (256)
247 3pqc_A Probable GTP-binding pr 99.8 9.4E-19 3.2E-23 167.7 17.1 157 420-589 20-193 (195)
248 3geh_A MNME, tRNA modification 99.8 1.3E-19 4.6E-24 195.5 12.3 198 11-223 223-436 (462)
249 3b1v_A Ferrous iron uptake tra 99.8 2.1E-19 7.1E-24 181.2 12.9 153 423-590 3-164 (272)
250 1wf3_A GTP-binding protein; GT 99.8 8.1E-19 2.8E-23 179.7 15.9 155 422-590 6-173 (301)
251 1xzp_A Probable tRNA modificat 99.8 2.7E-19 9.2E-24 194.0 12.5 197 11-221 242-454 (482)
252 4dhe_A Probable GTP-binding pr 99.8 8.3E-19 2.9E-23 172.2 15.0 161 421-591 27-212 (223)
253 2hjg_A GTP-binding protein ENG 99.8 2.1E-19 7.1E-24 194.6 11.4 162 10-177 173-349 (436)
254 1nrj_B SR-beta, signal recogni 99.8 6.5E-19 2.2E-23 172.4 11.3 151 6-163 6-170 (218)
255 3r7w_B Gtpase2, GTP-binding pr 99.8 1.9E-19 6.4E-24 183.1 7.2 154 425-589 1-173 (331)
256 3k53_A Ferrous iron transport 99.8 2.2E-18 7.5E-23 174.6 14.1 158 423-593 3-169 (271)
257 4dcu_A GTP-binding protein ENG 99.8 1.7E-18 5.7E-23 188.5 13.3 164 9-178 192-370 (456)
258 1xzp_A Probable tRNA modificat 99.8 1.2E-18 4.1E-23 188.9 11.6 183 421-620 241-433 (482)
259 3dpu_A RAB family protein; roc 99.8 1.9E-18 6.6E-23 192.0 13.1 163 420-592 38-210 (535)
260 1lnz_A SPO0B-associated GTP-bi 99.8 1.9E-18 6.6E-23 179.3 12.1 164 13-184 159-338 (342)
261 3geh_A MNME, tRNA modification 99.8 2E-18 7E-23 186.3 11.7 183 421-619 222-412 (462)
262 3qq5_A Small GTP-binding prote 99.7 6.8E-19 2.3E-23 187.5 7.0 163 3-178 25-197 (423)
263 1mky_A Probable GTP-binding pr 99.7 1.6E-17 5.4E-22 179.9 15.7 152 424-589 2-165 (439)
264 3sjy_A Translation initiation 99.7 2.3E-17 7.8E-22 176.6 16.4 171 7-179 3-194 (403)
265 1lnz_A SPO0B-associated GTP-bi 99.7 1.5E-17 5.2E-22 172.6 14.3 164 424-592 159-332 (342)
266 2xtp_A GTPase IMAP family memb 99.7 5E-18 1.7E-22 171.0 10.0 172 8-185 18-216 (260)
267 1ega_A Protein (GTP-binding pr 99.7 1E-17 3.6E-22 171.8 12.2 158 10-176 6-174 (301)
268 3izy_P Translation initiation 99.7 1E-18 3.5E-23 190.7 4.8 161 10-176 2-167 (537)
269 2e87_A Hypothetical protein PH 99.7 2.5E-17 8.7E-22 173.4 15.1 159 10-176 165-335 (357)
270 1ega_A Protein (GTP-binding pr 99.7 4.4E-17 1.5E-21 167.1 15.4 157 423-590 8-175 (301)
271 3lxw_A GTPase IMAP family memb 99.7 2.1E-17 7.1E-22 164.7 11.3 172 9-185 18-216 (247)
272 1wb1_A Translation elongation 99.7 3.9E-17 1.3E-21 178.1 13.2 162 7-176 14-188 (482)
273 2e87_A Hypothetical protein PH 99.7 3.3E-16 1.1E-20 164.9 19.3 161 421-589 165-335 (357)
274 3qq5_A Small GTP-binding prote 99.7 6.5E-18 2.2E-22 179.9 6.2 160 420-591 31-197 (423)
275 1nrj_B SR-beta, signal recogni 99.7 2E-17 6.8E-22 161.8 9.2 144 421-576 10-170 (218)
276 3sjy_A Translation initiation 99.7 2.7E-16 9.4E-21 168.2 18.1 166 420-592 5-194 (403)
277 3lxx_A GTPase IMAP family memb 99.7 7.8E-17 2.7E-21 160.0 12.7 167 9-180 26-217 (239)
278 2ged_A SR-beta, signal recogni 99.7 9.1E-17 3.1E-21 153.7 11.9 120 9-133 45-174 (193)
279 2qtf_A Protein HFLX, GTP-bindi 99.7 1.2E-16 4.1E-21 167.5 13.2 163 11-178 177-355 (364)
280 3j2k_7 ERF3, eukaryotic polype 99.7 1.8E-16 6.3E-21 171.0 14.6 159 7-169 12-217 (439)
281 1u0l_A Probable GTPase ENGC; p 99.7 2.1E-17 7.1E-22 169.5 6.4 132 27-169 32-165 (301)
282 1zo1_I IF2, translation initia 99.7 1.4E-17 5E-22 180.2 5.3 155 10-173 2-163 (501)
283 2qtf_A Protein HFLX, GTP-bindi 99.7 7.7E-16 2.6E-20 161.4 18.1 165 423-592 178-356 (364)
284 3tr5_A RF-3, peptide chain rel 99.7 1.1E-16 3.8E-21 175.7 11.7 115 11-130 12-149 (528)
285 1s0u_A EIF-2-gamma, translatio 99.7 5.5E-16 1.9E-20 166.2 16.1 165 8-178 4-199 (408)
286 3p26_A Elongation factor 1 alp 99.7 2.2E-16 7.5E-21 172.9 12.8 156 10-168 31-229 (483)
287 2aka_B Dynamin-1; fusion prote 99.7 4.2E-16 1.4E-20 160.2 13.7 159 9-175 23-251 (299)
288 2c78_A Elongation factor TU-A; 99.7 1.9E-16 6.4E-21 169.7 11.4 165 8-177 7-212 (405)
289 1zun_B Sulfate adenylate trans 99.6 1.5E-15 5.1E-20 164.1 16.2 157 9-169 21-216 (434)
290 3cb4_D GTP-binding protein LEP 99.6 8.5E-16 2.9E-20 170.4 14.3 161 11-179 3-184 (599)
291 3lxx_A GTPase IMAP family memb 99.6 4E-15 1.4E-19 147.6 17.9 163 420-590 26-214 (239)
292 2ywe_A GTP-binding protein LEP 99.6 1.5E-15 5E-20 168.1 16.1 162 10-179 4-186 (600)
293 3izy_P Translation initiation 99.6 2.1E-17 7.3E-22 180.4 1.4 161 422-592 3-170 (537)
294 3cb4_D GTP-binding protein LEP 99.6 1.8E-15 6E-20 167.8 16.7 162 422-593 3-185 (599)
295 1s0u_A EIF-2-gamma, translatio 99.6 7.4E-15 2.5E-19 157.4 21.1 165 421-592 6-200 (408)
296 1g7s_A Translation initiation 99.6 6E-16 2.1E-20 171.8 12.9 160 10-176 3-217 (594)
297 2ywe_A GTP-binding protein LEP 99.6 3.2E-15 1.1E-19 165.4 18.4 162 422-593 5-187 (600)
298 3j2k_7 ERF3, eukaryotic polype 99.6 1.3E-15 4.4E-20 164.4 14.9 153 420-582 14-217 (439)
299 2xtp_A GTPase IMAP family memb 99.6 1.6E-15 5.4E-20 152.6 14.5 165 421-590 20-208 (260)
300 1wb1_A Translation elongation 99.6 1.8E-15 6.2E-20 164.9 16.0 160 421-591 17-190 (482)
301 1d2e_A Elongation factor TU (E 99.6 3E-16 1E-20 167.5 9.5 165 10-178 1-196 (397)
302 3t5d_A Septin-7; GTP-binding p 99.6 3.1E-16 1.1E-20 158.9 8.8 160 10-175 6-202 (274)
303 1kk1_A EIF2gamma; initiation o 99.6 1.3E-15 4.4E-20 163.5 13.8 166 8-179 6-202 (410)
304 1kk1_A EIF2gamma; initiation o 99.6 8.3E-15 2.9E-19 157.2 19.6 166 420-592 7-202 (410)
305 1pui_A ENGB, probable GTP-bind 99.6 8.1E-16 2.8E-20 149.3 10.4 164 8-176 22-198 (210)
306 2c78_A Elongation factor TU-A; 99.6 1.2E-15 4.1E-20 163.4 12.7 163 421-592 9-214 (405)
307 3h2y_A GTPase family protein; 99.6 2.5E-16 8.5E-21 165.7 7.1 99 68-172 55-155 (368)
308 1jny_A EF-1-alpha, elongation 99.6 5E-16 1.7E-20 167.8 9.4 158 9-169 3-205 (435)
309 3izq_1 HBS1P, elongation facto 99.6 1.3E-15 4.4E-20 170.3 12.9 155 9-167 164-362 (611)
310 1d2e_A Elongation factor TU (E 99.6 2.6E-15 8.9E-20 160.2 14.7 162 422-592 2-197 (397)
311 2ged_A SR-beta, signal recogni 99.6 6.7E-16 2.3E-20 147.7 8.9 129 421-560 46-183 (193)
312 3t5d_A Septin-7; GTP-binding p 99.6 1.2E-15 4E-20 154.6 11.1 160 422-589 7-203 (274)
313 3tr5_A RF-3, peptide chain rel 99.6 1.1E-15 3.7E-20 167.8 11.0 129 422-562 12-162 (528)
314 3avx_A Elongation factor TS, e 99.6 2E-15 6.9E-20 174.1 13.0 168 7-178 291-487 (1289)
315 2elf_A Protein translation elo 99.6 1E-15 3.4E-20 161.1 9.3 149 14-176 23-179 (370)
316 3lxw_A GTPase IMAP family memb 99.6 3.5E-15 1.2E-19 148.5 12.8 165 421-590 19-208 (247)
317 3ec1_A YQEH GTPase; atnos1, at 99.6 1.8E-15 6.1E-20 159.3 10.2 98 68-171 57-156 (369)
318 1f60_A Elongation factor EEF1A 99.6 2.4E-15 8.3E-20 163.1 10.1 155 9-167 4-202 (458)
319 2aka_B Dynamin-1; fusion prote 99.6 1.6E-15 5.6E-20 155.8 8.1 158 421-588 24-251 (299)
320 2dy1_A Elongation factor G; tr 99.6 1.3E-14 4.5E-19 164.3 15.8 117 8-128 5-139 (665)
321 3def_A T7I23.11 protein; chlor 99.6 7E-15 2.4E-19 147.9 12.1 121 10-132 34-168 (262)
322 3mca_A HBS1, elongation factor 99.6 5.5E-16 1.9E-20 172.8 3.9 153 9-165 174-371 (592)
323 2qag_A Septin-2, protein NEDD5 99.6 4.9E-16 1.7E-20 163.3 3.0 161 11-177 36-233 (361)
324 1zun_B Sulfate adenylate trans 99.6 1.4E-14 4.9E-19 156.3 13.9 149 421-580 22-214 (434)
325 2rdo_7 EF-G, elongation factor 99.6 1.8E-14 6.3E-19 163.8 15.4 237 8-252 6-292 (704)
326 3p26_A Elongation factor 1 alp 99.6 1.1E-14 3.6E-19 159.5 12.9 150 421-579 31-227 (483)
327 2xex_A Elongation factor G; GT 99.6 1.7E-15 5.7E-20 172.2 6.7 235 8-252 6-284 (693)
328 1dar_A EF-G, elongation factor 99.6 2.2E-14 7.5E-19 163.0 15.8 126 1-130 1-144 (691)
329 2j69_A Bacterial dynamin-like 99.6 1.7E-14 5.9E-19 164.0 14.4 163 10-176 67-324 (695)
330 2h5e_A Peptide chain release f 99.6 2.9E-14 1E-18 156.6 15.6 117 10-130 11-149 (529)
331 4fid_A G protein alpha subunit 99.5 1.2E-14 4.3E-19 149.2 11.2 120 56-177 158-328 (340)
332 1h65_A Chloroplast outer envel 99.5 1.4E-14 4.7E-19 146.4 11.4 121 10-132 37-171 (270)
333 1r5b_A Eukaryotic peptide chai 99.5 5.6E-15 1.9E-19 160.7 8.6 157 10-169 41-244 (467)
334 2j69_A Bacterial dynamin-like 99.5 2.1E-14 7E-19 163.3 13.5 164 421-590 67-325 (695)
335 1jwy_B Dynamin A GTPase domain 99.5 1.8E-14 6.2E-19 149.2 11.9 161 9-177 21-262 (315)
336 1g7s_A Translation initiation 99.5 2.2E-14 7.6E-19 159.2 13.3 159 422-589 4-217 (594)
337 3avx_A Elongation factor TS, e 99.5 3.1E-14 1.1E-18 164.3 14.6 162 420-590 293-486 (1289)
338 1cip_A Protein (guanine nucleo 99.5 2E-14 6.8E-19 149.7 11.7 117 57-176 191-343 (353)
339 3izq_1 HBS1P, elongation facto 99.5 2.2E-14 7.5E-19 160.4 12.6 151 420-580 164-362 (611)
340 1jny_A EF-1-alpha, elongation 99.5 6.9E-15 2.4E-19 158.8 7.9 151 421-582 4-205 (435)
341 1zo1_I IF2, translation initia 99.5 6.2E-16 2.1E-20 167.4 -0.6 155 422-587 3-164 (501)
342 1pui_A ENGB, probable GTP-bind 99.5 5.3E-14 1.8E-18 136.4 13.0 160 421-590 24-199 (210)
343 3ohm_A Guanine nucleotide-bind 99.5 2.3E-14 7.9E-19 146.8 10.6 120 57-178 165-319 (327)
344 2qag_A Septin-2, protein NEDD5 99.5 4.3E-15 1.5E-19 156.0 5.0 157 421-589 35-232 (361)
345 1f60_A Elongation factor EEF1A 99.5 2.5E-14 8.6E-19 155.1 9.9 150 421-580 5-202 (458)
346 2elf_A Protein translation elo 99.5 6.6E-14 2.3E-18 147.2 12.2 145 425-590 23-180 (370)
347 1jwy_B Dynamin A GTPase domain 99.5 3.2E-14 1.1E-18 147.3 9.7 162 421-591 22-263 (315)
348 3t34_A Dynamin-related protein 99.5 5.4E-14 1.9E-18 148.2 11.3 153 11-170 33-254 (360)
349 2dy1_A Elongation factor G; tr 99.5 1.7E-13 5.9E-18 155.1 15.0 132 421-563 7-154 (665)
350 2x2e_A Dynamin-1; nitration, h 99.5 5.3E-14 1.8E-18 147.7 9.2 158 11-174 30-255 (353)
351 3ohm_A Guanine nucleotide-bind 99.5 1.3E-13 4.4E-18 141.3 11.5 118 470-592 165-320 (327)
352 2h5e_A Peptide chain release f 99.5 2.3E-13 7.8E-18 149.6 14.2 116 422-548 12-149 (529)
353 1udx_A The GTP-binding protein 99.5 5.4E-13 1.8E-17 141.5 15.6 164 424-592 158-327 (416)
354 1r5b_A Eukaryotic peptide chai 99.5 7.5E-14 2.5E-18 151.8 8.6 151 421-581 41-243 (467)
355 3mca_A HBS1, elongation factor 99.4 1.7E-14 5.7E-19 160.9 3.2 159 420-588 174-395 (592)
356 3def_A T7I23.11 protein; chlor 99.4 1.6E-12 5.5E-17 130.6 17.2 122 421-547 34-165 (262)
357 1udx_A The GTP-binding protein 99.4 7.4E-13 2.5E-17 140.5 15.3 158 13-179 158-327 (416)
358 2qnr_A Septin-2, protein NEDD5 99.4 4.5E-14 1.5E-18 144.5 5.3 161 11-178 17-215 (301)
359 1dar_A EF-G, elongation factor 99.4 8.5E-13 2.9E-17 149.9 15.9 114 421-547 10-143 (691)
360 4fid_A G protein alpha subunit 99.4 4.7E-13 1.6E-17 137.5 12.0 123 462-590 153-328 (340)
361 1azs_C GS-alpha; complex (lyas 99.4 1.4E-12 4.7E-17 137.2 14.3 115 471-589 216-384 (402)
362 3t34_A Dynamin-related protein 99.4 1.9E-13 6.4E-18 144.1 7.4 153 422-583 33-254 (360)
363 1wxq_A GTP-binding protein; st 99.4 8.5E-14 2.9E-18 147.5 4.2 83 13-95 1-114 (397)
364 3vqt_A RF-3, peptide chain rel 99.4 2E-12 6.9E-17 142.6 15.3 115 12-130 31-167 (548)
365 1h65_A Chloroplast outer envel 99.4 3.3E-12 1.1E-16 128.9 15.5 124 421-549 37-170 (270)
366 1u0l_A Probable GTPase ENGC; p 99.4 1.4E-13 4.8E-18 141.0 5.4 133 438-586 32-169 (301)
367 1puj_A YLQF, conserved hypothe 99.4 1.7E-12 6E-17 131.1 13.1 99 63-173 3-102 (282)
368 2x2e_A Dynamin-1; nitration, h 99.4 1.7E-13 5.9E-18 143.8 5.7 156 422-587 30-255 (353)
369 2qag_C Septin-7; cell cycle, c 99.4 2.4E-13 8.3E-18 144.3 6.8 161 11-176 30-226 (418)
370 1wxq_A GTP-binding protein; st 99.4 3.8E-13 1.3E-17 142.5 8.2 87 424-510 1-114 (397)
371 2xex_A Elongation factor G; GT 99.4 2.8E-12 9.5E-17 145.8 15.9 117 421-548 8-142 (693)
372 2qnr_A Septin-2, protein NEDD5 99.4 5.2E-13 1.8E-17 136.6 8.8 161 422-590 17-214 (301)
373 2yv5_A YJEQ protein; hydrolase 99.4 1.5E-12 5E-17 133.3 11.5 108 56-169 47-161 (302)
374 2qag_C Septin-7; cell cycle, c 99.4 8.8E-13 3E-17 140.0 9.6 159 422-588 30-225 (418)
375 2rdo_7 EF-G, elongation factor 99.4 6.3E-12 2.1E-16 143.0 17.1 118 421-547 8-148 (704)
376 2wsm_A Hydrogenase expression/ 99.3 4.4E-13 1.5E-17 131.0 5.5 154 11-177 29-214 (221)
377 2qpt_A EH domain-containing pr 99.3 1.5E-12 5.2E-17 143.8 10.4 119 9-130 62-233 (550)
378 2xtz_A Guanine nucleotide-bind 99.3 6.8E-13 2.3E-17 138.0 7.1 119 57-176 181-344 (354)
379 3p32_A Probable GTPase RV1496/ 99.3 5.2E-13 1.8E-17 140.2 5.6 106 57-176 170-283 (355)
380 1jal_A YCHF protein; nucleotid 99.3 1.2E-11 3.9E-16 128.3 14.9 148 424-574 3-240 (363)
381 1jal_A YCHF protein; nucleotid 99.3 2.7E-11 9.3E-16 125.5 17.5 83 12-94 2-108 (363)
382 3zvr_A Dynamin-1; hydrolase, D 99.3 4.9E-12 1.7E-16 142.4 12.0 156 10-174 49-275 (772)
383 2wsm_A Hydrogenase expression/ 99.3 1.6E-12 5.5E-17 127.0 7.0 154 422-591 29-215 (221)
384 2www_A Methylmalonic aciduria 99.3 1.3E-12 4.3E-17 136.6 6.5 151 11-175 73-277 (349)
385 1yrb_A ATP(GTP)binding protein 99.3 7.4E-12 2.5E-16 125.7 10.9 167 7-176 9-256 (262)
386 1zcb_A G alpha I/13; GTP-bindi 99.3 2.8E-12 9.7E-17 133.9 8.0 120 55-176 197-352 (362)
387 3zvr_A Dynamin-1; hydrolase, D 99.3 2.5E-11 8.6E-16 136.7 16.0 157 421-587 49-275 (772)
388 2www_A Methylmalonic aciduria 99.3 7.5E-12 2.6E-16 130.7 10.7 153 421-589 72-278 (349)
389 3p32_A Probable GTPase RV1496/ 99.3 6.8E-12 2.3E-16 131.6 10.3 155 420-590 76-284 (355)
390 2hf9_A Probable hydrogenase ni 99.3 8.6E-14 2.9E-18 136.6 -4.1 58 533-590 164-224 (226)
391 1cip_A Protein (guanine nucleo 99.3 6.4E-12 2.2E-16 130.7 9.7 122 462-590 185-344 (353)
392 1azs_C GS-alpha; complex (lyas 99.3 3.7E-12 1.3E-16 133.9 7.7 120 56-176 214-384 (402)
393 1n0u_A EF-2, elongation factor 99.3 4.8E-12 1.6E-16 146.8 9.4 115 10-128 17-163 (842)
394 3j25_A Tetracycline resistance 99.3 4.3E-12 1.5E-16 143.0 8.3 113 14-130 4-134 (638)
395 2p67_A LAO/AO transport system 99.3 2.7E-12 9.4E-17 133.8 6.2 107 56-176 146-260 (341)
396 4a9a_A Ribosome-interacting GT 99.2 7.8E-11 2.7E-15 122.8 16.0 119 422-545 71-194 (376)
397 2qpt_A EH domain-containing pr 99.2 1.4E-11 4.6E-16 136.2 9.4 121 421-549 63-234 (550)
398 2xtz_A Guanine nucleotide-bind 99.2 1.4E-11 4.8E-16 128.1 8.8 116 470-589 181-344 (354)
399 2dby_A GTP-binding protein; GD 99.2 6.4E-11 2.2E-15 123.7 13.2 157 424-583 2-255 (368)
400 1zcb_A G alpha I/13; GTP-bindi 99.2 2.4E-11 8.3E-16 126.8 9.7 141 440-589 166-352 (362)
401 2dby_A GTP-binding protein; GD 99.2 4.1E-11 1.4E-15 125.1 10.6 81 13-94 2-111 (368)
402 2hf9_A Probable hydrogenase ni 99.2 1.7E-11 5.7E-16 120.2 6.7 153 11-176 37-223 (226)
403 2p67_A LAO/AO transport system 99.2 2.8E-11 9.7E-16 126.1 8.4 102 472-589 149-260 (341)
404 4fn5_A EF-G 1, elongation fact 99.2 3.6E-10 1.2E-14 129.1 18.1 116 11-130 11-152 (709)
405 1n0u_A EF-2, elongation factor 99.2 4.4E-11 1.5E-15 138.7 10.2 117 421-546 17-163 (842)
406 1yrb_A ATP(GTP)binding protein 99.2 1.5E-10 5E-15 116.1 12.7 111 472-589 109-256 (262)
407 4a9a_A Ribosome-interacting GT 99.1 4.7E-11 1.6E-15 124.5 8.1 114 12-129 72-196 (376)
408 3vqt_A RF-3, peptide chain rel 99.1 5.3E-10 1.8E-14 123.3 16.6 113 424-547 32-166 (548)
409 3cnl_A YLQF, putative uncharac 99.0 7.9E-11 2.7E-15 117.6 4.7 89 66-169 4-93 (262)
410 2qm8_A GTPase/ATPase; G protei 99.0 7.9E-10 2.7E-14 114.7 10.4 153 10-175 53-259 (337)
411 2qm8_A GTPase/ATPase; G protei 99.0 1E-09 3.6E-14 113.8 10.8 153 421-589 53-260 (337)
412 3j25_A Tetracycline resistance 99.0 3.4E-10 1.2E-14 127.5 6.0 160 424-594 3-243 (638)
413 2ohf_A Protein OLA1, GTP-bindi 98.9 5.5E-10 1.9E-14 116.8 5.1 93 421-513 20-132 (396)
414 2yv5_A YJEQ protein; hydrolase 98.9 3.3E-09 1.1E-13 108.4 8.2 95 482-585 66-164 (302)
415 4fn5_A EF-G 1, elongation fact 98.8 5E-08 1.7E-12 111.4 17.5 117 422-547 12-151 (709)
416 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 3.1E-08 1.1E-12 103.9 13.9 89 421-509 18-127 (392)
417 2ohf_A Protein OLA1, GTP-bindi 98.8 6.1E-09 2.1E-13 109.0 6.9 91 10-100 20-134 (396)
418 1t9h_A YLOQ, probable GTPase E 98.7 1.1E-08 3.8E-13 103.8 5.1 86 75-167 79-167 (307)
419 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.3E-07 4.5E-12 99.1 13.4 85 10-94 18-127 (392)
420 3l82_B F-box only protein 4; T 98.7 1.4E-08 4.8E-13 95.1 5.0 108 66-177 109-223 (227)
421 3l82_B F-box only protein 4; T 98.6 4.1E-08 1.4E-12 91.9 6.7 103 481-590 111-223 (227)
422 2j37_W Signal recognition part 98.5 2.5E-07 8.7E-12 100.2 9.8 152 10-174 99-310 (504)
423 2rcn_A Probable GTPase ENGC; Y 98.5 3.5E-07 1.2E-11 94.6 10.0 83 79-168 127-210 (358)
424 2j37_W Signal recognition part 98.5 2.9E-07 9.8E-12 99.7 8.9 153 421-587 99-310 (504)
425 3h2y_A GTPase family protein; 98.5 2.6E-07 9E-12 96.8 8.4 98 481-589 55-159 (368)
426 3l2o_B F-box only protein 4; s 98.4 1.7E-07 5.7E-12 92.3 5.5 110 66-178 194-309 (312)
427 1tq4_A IIGP1, interferon-induc 98.4 2.4E-06 8.1E-11 90.3 14.1 159 12-176 69-252 (413)
428 1tq4_A IIGP1, interferon-induc 98.4 1.1E-06 3.7E-11 92.9 10.5 155 422-590 68-253 (413)
429 2qag_B Septin-6, protein NEDD5 98.4 3.6E-07 1.2E-11 96.5 6.6 113 13-130 43-191 (427)
430 3ec1_A YQEH GTPase; atnos1, at 98.3 5.7E-07 2E-11 94.3 7.1 99 481-590 57-162 (369)
431 3l2o_B F-box only protein 4; s 98.3 2E-07 7E-12 91.7 3.3 101 481-590 196-308 (312)
432 2qag_B Septin-6, protein NEDD5 98.3 1.7E-06 5.7E-11 91.3 9.8 142 423-573 42-218 (427)
433 3sop_A Neuronal-specific septi 98.2 1.4E-06 4.9E-11 87.0 7.7 113 12-129 2-154 (270)
434 3sop_A Neuronal-specific septi 98.2 3.2E-06 1.1E-10 84.5 8.8 119 423-550 2-157 (270)
435 1puj_A YLQF, conserved hypothe 98.0 5.7E-06 1.9E-10 83.2 6.9 86 491-589 17-105 (282)
436 2v3c_C SRP54, signal recogniti 98.0 6.2E-06 2.1E-10 87.9 6.1 111 12-129 99-252 (432)
437 3dm5_A SRP54, signal recogniti 98.0 0.0001 3.6E-09 78.0 15.3 141 11-167 99-281 (443)
438 2v3c_C SRP54, signal recogniti 97.9 6.8E-06 2.3E-10 87.6 4.3 151 423-588 99-309 (432)
439 3cnl_A YLQF, putative uncharac 97.8 9.8E-06 3.4E-10 80.6 4.3 57 13-71 100-156 (262)
440 3dm5_A SRP54, signal recogniti 97.8 8.9E-05 3.1E-09 78.6 11.6 137 422-572 99-274 (443)
441 1f5n_A Interferon-induced guan 97.8 2.2E-05 7.7E-10 86.3 6.8 63 9-71 35-103 (592)
442 3kl4_A SRP54, signal recogniti 97.6 0.00041 1.4E-08 73.5 12.3 140 11-166 96-279 (433)
443 1j8m_F SRP54, signal recogniti 97.4 0.0019 6.5E-08 65.2 14.9 141 423-579 98-280 (297)
444 1t9h_A YLOQ, probable GTPase E 97.4 9.6E-05 3.3E-09 74.8 5.2 85 491-582 80-169 (307)
445 1j8m_F SRP54, signal recogniti 97.4 0.00012 4.2E-09 73.9 5.9 139 12-167 98-281 (297)
446 1f5n_A Interferon-induced guan 97.4 0.00017 5.7E-09 79.4 7.4 63 420-482 35-101 (592)
447 3kl4_A SRP54, signal recogniti 97.4 0.00049 1.7E-08 72.9 10.1 137 422-572 96-273 (433)
448 3szr_A Interferon-induced GTP- 97.3 0.00053 1.8E-08 76.6 10.3 24 424-447 46-69 (608)
449 2mys_B Myosin; muscle protein, 97.2 0.0014 4.6E-08 59.7 9.6 137 189-377 18-158 (166)
450 3szr_A Interferon-induced GTP- 97.2 0.0005 1.7E-08 76.8 7.3 23 14-36 47-69 (608)
451 3fwb_A Cell division control p 97.1 0.0011 3.9E-08 59.7 8.3 142 188-376 15-158 (161)
452 2rcn_A Probable GTPase ENGC; Y 97.0 0.0015 5E-08 67.4 9.0 82 494-584 127-213 (358)
453 3ox6_A Calcium-binding protein 97.0 0.0012 4.2E-08 58.7 7.6 144 190-376 5-151 (153)
454 1dtl_A Cardiac troponin C; hel 97.0 0.0016 5.4E-08 58.8 8.3 147 185-376 7-157 (161)
455 3j04_B Myosin regulatory light 97.0 0.00073 2.5E-08 59.7 5.5 134 192-377 3-139 (143)
456 2mys_C Myosin; muscle protein, 97.0 0.0039 1.3E-07 55.1 10.2 141 191-376 3-146 (149)
457 2aao_A CDPK, calcium-dependent 96.9 0.0039 1.3E-07 56.5 10.0 140 190-377 21-160 (166)
458 3qrx_A Centrin; calcium-bindin 96.9 0.0016 5.4E-08 59.3 6.7 141 189-377 21-164 (169)
459 3pxi_A Negative regulator of g 96.9 0.0048 1.7E-07 71.0 12.3 25 11-35 200-224 (758)
460 1q80_A SCP, sarcoplasmic calci 96.8 0.0019 6.6E-08 59.0 7.3 145 192-377 2-155 (174)
461 1bif_A 6-phosphofructo-2-kinas 96.8 0.0002 6.7E-09 77.7 0.2 113 10-126 37-160 (469)
462 2obh_A Centrin-2; DNA repair c 96.8 0.0023 7.9E-08 56.7 6.9 136 193-375 3-140 (143)
463 2bl0_C Myosin regulatory light 96.8 0.0015 5.2E-08 57.5 5.7 135 193-376 3-140 (142)
464 2ccm_A Calexcitin; EF hand, ca 96.7 0.0053 1.8E-07 57.1 9.0 152 191-376 7-169 (191)
465 3dtp_E RLC, myosin regulatory 96.7 0.001 3.5E-08 62.7 4.1 135 190-377 51-188 (196)
466 3e70_C DPA, signal recognition 96.7 0.0027 9.4E-08 64.9 7.4 142 10-167 127-310 (328)
467 2lvv_A Flagellar calcium-bindi 96.7 0.003 1E-07 60.9 7.4 146 190-377 45-197 (226)
468 1nya_A Calerythrin; EF-hand, m 96.7 0.0027 9.1E-08 58.1 6.7 118 192-345 3-131 (176)
469 4ds7_A Calmodulin, CAM; protei 96.6 0.0037 1.3E-07 55.2 7.3 137 190-375 5-144 (147)
470 1wdc_B Scallop myosin; calcium 96.6 0.003 1E-07 56.6 6.7 135 189-376 11-148 (156)
471 2sas_A Sarcoplasmic calcium-bi 96.6 0.012 4.2E-07 54.0 10.9 150 192-377 4-166 (185)
472 3akb_A Putative calcium bindin 96.6 0.0028 9.7E-08 57.3 6.3 144 195-376 3-158 (166)
473 1exr_A Calmodulin; high resolu 96.6 0.0039 1.3E-07 55.4 7.1 139 190-376 4-145 (148)
474 3e70_C DPA, signal recognition 96.6 0.0042 1.4E-07 63.5 8.0 142 422-579 128-309 (328)
475 2xxa_A Signal recognition part 96.5 0.0098 3.4E-07 63.2 10.6 112 11-129 99-254 (433)
476 3u0k_A Rcamp; fluorescent prot 96.5 0.0061 2.1E-07 63.4 8.5 114 184-344 290-403 (440)
477 2ovk_B RLC, myosin regulatory 96.4 0.0085 2.9E-07 53.4 8.5 107 188-345 8-114 (153)
478 3i5g_B Myosin regulatory light 96.4 0.015 5.1E-07 52.2 9.9 108 187-345 7-114 (153)
479 2ovk_C Myosin catalytic light 96.4 0.0013 4.4E-08 59.4 2.7 145 190-381 3-154 (159)
480 1r6b_X CLPA protein; AAA+, N-t 96.4 0.02 6.9E-07 65.8 13.2 25 11-35 206-230 (758)
481 1top_A Troponin C; contractIle 96.4 0.0067 2.3E-07 54.5 7.4 142 190-376 14-158 (162)
482 1y1x_A Leishmania major homolo 96.4 0.0062 2.1E-07 56.9 7.4 129 195-378 26-157 (191)
483 2lmt_A Calmodulin-related prot 96.3 0.0022 7.4E-08 57.3 3.7 138 190-374 4-143 (148)
484 2hpk_A Photoprotein berovin; s 96.3 0.007 2.4E-07 57.3 7.4 156 190-378 30-190 (208)
485 1bif_A 6-phosphofructo-2-kinas 96.2 0.00081 2.8E-08 72.8 0.3 104 421-526 37-148 (469)
486 3cs1_A Flagellar calcium-bindi 96.2 0.0068 2.3E-07 58.1 6.9 146 190-377 42-194 (219)
487 3q5d_A Atlastin-1; G protein, 96.2 0.023 8E-07 60.2 11.5 27 9-35 64-90 (447)
488 2f2o_A Calmodulin fused with c 96.2 0.0082 2.8E-07 55.1 6.8 139 192-378 7-148 (179)
489 4dzz_A Plasmid partitioning pr 96.1 0.017 5.8E-07 54.4 9.2 67 57-128 74-143 (206)
490 3q5d_A Atlastin-1; G protein, 96.1 0.006 2.1E-07 64.8 6.1 26 421-446 65-90 (447)
491 3pm8_A PFCDPK2, calcium-depend 96.1 0.0012 4.1E-08 62.3 0.7 138 191-376 52-193 (197)
492 2lhi_A Calmodulin, serine/thre 96.1 0.0046 1.6E-07 57.1 4.6 137 192-377 7-146 (176)
493 2xxa_A Signal recognition part 96.0 0.069 2.4E-06 56.6 14.1 151 422-587 99-310 (433)
494 1rj9_A FTSY, signal recognitio 96.0 0.039 1.3E-06 55.6 11.4 63 496-571 219-281 (304)
495 2znd_A Programmed cell death p 95.9 0.0072 2.4E-07 55.2 5.1 130 195-378 6-138 (172)
496 3sjs_A URE3-BP sequence specif 95.9 0.038 1.3E-06 52.9 10.5 137 187-378 42-180 (220)
497 2bec_A Calcineurin B homologou 95.9 0.0062 2.1E-07 57.3 4.8 153 190-377 23-182 (202)
498 3ney_A 55 kDa erythrocyte memb 95.9 0.004 1.4E-07 58.5 3.2 27 9-35 16-42 (197)
499 1qv0_A Obelin, OBL; photoprote 95.9 0.009 3.1E-07 55.6 5.8 154 190-377 14-176 (195)
500 2bl0_B Myosin regulatory light 95.9 0.0077 2.6E-07 52.9 4.9 130 198-377 7-139 (145)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.5e-40 Score=355.10 Aligned_cols=325 Identities=17% Similarity=0.171 Sum_probs=219.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCc--------cchhhhHHHhc
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEELK 81 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~ 81 (670)
..+|+|+|+||||||||+|+|++.++.. +.+++... .........+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc-eEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3799999999999999999999987542 34442221 2333455667889999999986 45556678899
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+||++|+|+|++++.+..+. .+...+++. ++|+++|+||+|+...... ..+ +. .++ ..+++++||++|
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~~--~~~----~~-~lg-~~~~~~iSA~~g 149 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN--IYD----FY-SLG-FGEPYPISGTHG 149 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----C--CCS----SG-GGS-SCCCEECBTTTT
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchhh--HHH----HH-HcC-CCCeEEEeCcCC
Confidence 99999999999988776653 366666654 8999999999998754321 111 11 222 236899999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~ 241 (670)
.|+.++++.+.+.+......
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~------------------------------------------------------------ 169 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPET------------------------------------------------------------ 169 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSS------------------------------------------------------------
T ss_pred CChHHHHHHHHHhcCccccc------------------------------------------------------------
Confidence 99999999876543210000
Q ss_pred HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (670)
Q Consensus 242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~ 321 (670)
T Consensus 170 -------------------------------------------------------------------------------- 169 (436)
T 2hjg_A 170 -------------------------------------------------------------------------------- 169 (436)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (670)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (670)
T Consensus 170 -------------------------------------------------------------------------------- 169 (436)
T 2hjg_A 170 -------------------------------------------------------------------------------- 169 (436)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecC
Q 005908 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEI 480 (670)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~ 480 (670)
......+||+++|++|||||||+|+|++..+..++. ++++.+.....+..+| ..+.+|||+
T Consensus 170 ----------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~ 231 (436)
T 2hjg_A 170 ----------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTA 231 (436)
T ss_dssp ----------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHH
T ss_pred ----------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECC
Confidence 001234899999999999999999999988764333 3333333334455553 457889999
Q ss_pred Ch----------hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908 481 PE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (670)
Q Consensus 481 g~----------~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~ 550 (670)
|+ +.+..+ +...+++.+|++++|+|++++.++++. .|...+... ++|+++|+||+|+.+...
T Consensus 232 G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA------GKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHTCBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT------TCEEEEEEECGGGSCCCT
T ss_pred CcCcCccccchHHHHHHH-HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc------CCcEEEEEECccCCCcch
Confidence 97 444433 244688999999999999999887765 566666543 799999999999987543
Q ss_pred c--HHHHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCC
Q 005908 551 A--VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI 595 (670)
Q Consensus 551 ~--~~~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~ 595 (670)
. .+..+++.+.+ ...+++++||++| |++++|+.+.+.+.....+.
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 3 22333344443 3346999999999 99999999999887655443
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=2.5e-38 Score=345.20 Aligned_cols=329 Identities=18% Similarity=0.178 Sum_probs=220.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCC--------CccchhhhHH
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSS--------SLENKGKLNE 78 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--------~~~~~~~~~~ 78 (670)
.+...+|+|+|++|||||||+|+|++.++.. ..+++... .........+..+.+||||| ++.+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~-~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCccee-EEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4556799999999999999999999987542 23432221 23344556678999999999 4455566778
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+++.+|++|+|+|..+..+..+ ..+.+.+++. ++|+++|+||+|+...... ..+.+...++ .++++||
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECCT
T ss_pred hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEeec
Confidence 8999999999999876544443 3366677664 8999999999998754221 1111122232 5789999
Q ss_pred ccCCCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV 238 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l 238 (670)
++|.|+.++++.+.+.+.....
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~~---------------------------------------------------------- 188 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIPE---------------------------------------------------------- 188 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSCS----------------------------------------------------------
T ss_pred ccccchHHHHHHHHhhcccccc----------------------------------------------------------
Confidence 9999999999876542210000
Q ss_pred HHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHH
Q 005908 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFL 318 (670)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~ 318 (670)
.
T Consensus 189 ----------------------------------------------------------~--------------------- 189 (456)
T 4dcu_A 189 ----------------------------------------------------------T--------------------- 189 (456)
T ss_dssp ----------------------------------------------------------S---------------------
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred HHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCC
Q 005908 319 RGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG 398 (670)
Q Consensus 319 ~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~ 398 (670)
T Consensus 190 -------------------------------------------------------------------------------- 189 (456)
T 4dcu_A 190 -------------------------------------------------------------------------------- 189 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChHHHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEE
Q 005908 399 DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLIL 477 (670)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~ 477 (670)
......++|+++|.+|||||||+|+|++.....+.. ++++.+.....+..+| ..+.+|
T Consensus 190 -------------------~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~ 248 (456)
T 4dcu_A 190 -------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIV 248 (456)
T ss_dssp -------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEET
T ss_pred -------------------ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEE
Confidence 001234899999999999999999999887544333 3333333233445553 478899
Q ss_pred ecCC----------hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 478 QEIP----------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 478 d~~g----------~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
||+| ++.+..+ +...+++.+|++|+|+|++++.+ .....|...+... ++|+++|+||+|+.+
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEA------GKAVVIVVNKWDAVD 320 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSC
T ss_pred ECCCCCcCcccchHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHc------CCCEEEEEEChhcCC
Confidence 9999 5666554 24568899999999999998765 4445666666553 799999999999986
Q ss_pred Cccc-HHHHHHHHHHh----CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908 548 YTMA-VQDSARVTQEL----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP 596 (670)
Q Consensus 548 ~~~~-~~~~~~~~~~~----~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~ 596 (670)
.+.. .++..+.++.. +..+++++||++| |++++|+.+.+.+..+..+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 4433 44444444443 3457999999999 999999999999876655443
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=2e-37 Score=336.30 Aligned_cols=330 Identities=17% Similarity=0.173 Sum_probs=213.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccc---------hhhhHHHhc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEELK 81 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~ 81 (670)
.+|+|+|+||||||||+|+|++.+. +.+.|++.... ....+...+..+.+|||||++.. ...+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CC-SEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccce-eeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 3799999999999999999999874 34455533221 22344456778999999998742 334567899
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+||++|+|+|++++.+..+. .+...+++. ++|+++|+||+|+... . ..+....+. .++ ..+++++||++|
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~--~--~~~~~~~~~-~lg-~~~~~~iSA~~g 150 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE--F--EREVKPELY-SLG-FGEPIPVSAEHN 150 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH--H--HHHTHHHHG-GGS-SCSCEECBTTTT
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc--c--HHHHHHHHH-hcC-CCCEEEEeccCC
Confidence 99999999999887665442 255556655 7999999999997531 0 111112222 333 236899999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~ 241 (670)
.|++++++.+.+.+......
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~------------------------------------------------------------ 170 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLD------------------------------------------------------------ 170 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCC------------------------------------------------------------
T ss_pred CCHHHHHHHHHHhccccccc------------------------------------------------------------
Confidence 99999999887654210000
Q ss_pred HhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 005908 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (670)
Q Consensus 242 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~ 321 (670)
..
T Consensus 171 ------------------------------------------------------~~------------------------ 172 (439)
T 1mky_A 171 ------------------------------------------------------LE------------------------ 172 (439)
T ss_dssp ------------------------------------------------------SS------------------------
T ss_pred ------------------------------------------------------ch------------------------
Confidence 00
Q ss_pred hhhhcCCCCCCCCHhhHhhhhccCCCCCCCCCCCCCCccccCCCccchhhhHhhhhhhhccCHHHHHHHHHHHhcCCChH
Q 005908 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (670)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (670)
.
T Consensus 173 ------------------------------~------------------------------------------------- 173 (439)
T 1mky_A 173 ------------------------------S------------------------------------------------- 173 (439)
T ss_dssp ------------------------------S-------------------------------------------------
T ss_pred ------------------------------h-------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhhhhHHHHhcccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEec
Q 005908 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQE 479 (670)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~ 479 (670)
.......++|+|+|++|||||||+|+|++..+..+++ +|+.+ .....+...| ..+.+||+
T Consensus 174 ---------------~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d-~~~~~i~~~g--~~~~l~Dt 235 (439)
T 1mky_A 174 ---------------KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-PVDDEVFIDG--RKYVFVDT 235 (439)
T ss_dssp ---------------CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETT--EEEEESSC
T ss_pred ---------------ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCC-ceEEEEEECC--EEEEEEEC
Confidence 0001234899999999999999999999987654433 34333 2223455553 35678999
Q ss_pred CChhhHhhh----------hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908 480 IPEEGVKKI----------LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 480 ~g~~~~~~~----------~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~ 549 (670)
+|......+ .+...+++.+|++++|+|++++.++++ ..+...+... ++|+++|+||+|+.+.+
T Consensus 236 ~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~~------~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 236 AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR------GRASVVVFNKWDLVVHR 308 (439)
T ss_dssp SCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT------TCEEEEEEECGGGSTTG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCCch
Confidence 997433221 113457788999999999999877654 2333333332 79999999999998644
Q ss_pred cc-HH-HHHHHHHHh---CCCCcEEeecccC-ChHHHHHHHHHHHhCCCCCC
Q 005908 550 MA-VQ-DSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI 595 (670)
Q Consensus 550 ~~-~~-~~~~~~~~~---~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~ 595 (670)
.. .+ ..+.+.+.+ ...+++++||++| |++++|+.+.+.+.....+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence 31 22 222333433 3446999999999 99999999999887655443
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=2.2e-30 Score=252.77 Aligned_cols=163 Identities=20% Similarity=0.350 Sum_probs=138.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+..++....+.+||++|+++|..+ +..+++.+|++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l--~~~~~~~a~~~ 89 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL--IPSYIRDSAAA 89 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG--HHHHHTTCSEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH--HHHHhccccEE
Confidence 4589999999999999999999999999988899998888888888888889999999999999998 88999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.||+.+..|+..+...... +.|++|||||+|+.+.+ +..++++++++++++. +++|||++| ||++
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV~e 165 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQ 165 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCHHH
Confidence 9999999999999999999999877654 69999999999998754 4488899999999987 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|+.|++.+..
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=3.1e-29 Score=244.56 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=133.3
Q ss_pred CCCCCCCC-CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-e-EeCCcccCCceeEEEEeCCCCccchhhhH
Q 005908 1 MPGGSGSS-SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (670)
Q Consensus 1 m~~~~~~~-~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (670)
|++..+.. +.+++||+|+|++|||||||++||+.+.|...+.++.+. . ..........+++.||||+|+++|..+++
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 44444443 457899999999999999999999999998885544432 2 24455667789999999999999999999
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEe
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
.++++++++++|||++++.||+++.. |+..++. ..+++|++|||||+|+.+.+.+ ..+....++++++. +|+||
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~ 155 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIET 155 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEE
T ss_pred HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhCC--eeEEE
Confidence 99999999999999999999999985 8888765 4568999999999999887777 34556888888873 79999
Q ss_pred CcccCCCchHHHHHHHHHHcC
Q 005908 157 SATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~ 177 (670)
||++|.||+++|+.|++.+..
T Consensus 156 SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC--
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 6
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-25 Score=215.86 Aligned_cols=172 Identities=23% Similarity=0.338 Sum_probs=140.2
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (670)
|+.....+.+||+++|++|||||||+++|+++.+.....++.+ .......+....+.+.+|||||++++...+..+++.
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 4444455779999999999999999999999988776444333 333344455566899999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREI 150 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~ 150 (670)
+|++|+|||++++.+++.+...|+..++...+++|+++|+||+|+.+. +.+ ..+....+++.++.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~- 166 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGA- 166 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTC-
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc--CHHHHHHHHHHcCC-
Confidence 999999999999999999976799999887779999999999999764 223 23445677777763
Q ss_pred CeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 151 ETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 151 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
.++++|||++|.||+++|+++.+.++.+
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 3699999999999999999999987653
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=1.7e-25 Score=215.26 Aligned_cols=170 Identities=21% Similarity=0.342 Sum_probs=139.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+++|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++.+...+..+++++|++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4567999999999999999999999999877644443333 344445566788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|||++++.+++.+...|...++...+++|+++|+||+|+..........+....+++.++. ..+++|||++|.||+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-VAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-SCEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-CEEEEeecCCCCCHHHH
Confidence 99999999999998667999998887889999999999998642211244556778888763 24999999999999999
Q ss_pred HHHHHHHHcCCC
Q 005908 168 FYYAQKAVLHPT 179 (670)
Q Consensus 168 ~~~i~~~~~~~~ 179 (670)
|+.+.+.+....
T Consensus 179 ~~~l~~~i~~~~ 190 (194)
T 3reg_A 179 FEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC
Confidence 999999887554
No 8
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=1.1e-25 Score=220.09 Aligned_cols=172 Identities=24% Similarity=0.282 Sum_probs=136.8
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
+......+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.+|||+|++.+...+..+++.+|
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3455678999999999999999999999999887744444333 344455667789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCe
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIET 152 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~ 152 (670)
++|+|||++++.+++.+...|+..++...+++|++||+||+|+.++ +.+ ..+....+++.++. .+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~ 177 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EI 177 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CE
Confidence 9999999999999999544699999888889999999999999753 333 34556778888763 37
Q ss_pred EEEeCcccCCC-chHHHHHHHHHHcCCCC
Q 005908 153 CVECSATTMIQ-VPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 153 ~~~~SA~~~~g-i~~l~~~i~~~~~~~~~ 180 (670)
+++|||++|.| |+++|+.+.+.+.....
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999999998 99999999998876544
No 9
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=3.3e-25 Score=211.43 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=132.1
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
+.....+.+||+|+|++|||||||+++|+++.+.....++.+.......+.+..+.+.+|||+|++.+. +++.+|
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 344567889999999999999999999999998776555554444455566667889999999998765 888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
++++|||++++.+++.+.. |+..+.... .++|++||+||+|+.. .+.+ ..+....++..++. .++++|||++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~Sa~~ 163 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR-CTYYETCATY 163 (184)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT-CEEEEEBTTT
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCC-CeEEEecCCC
Confidence 9999999999999999885 999887753 4799999999999953 3333 34556778887763 3799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 005908 161 MIQVPDVFYYAQKAVL 176 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (670)
|.||+++|+++.+.+.
T Consensus 164 ~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVV 179 (184)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998765
No 10
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=1.8e-25 Score=212.48 Aligned_cols=170 Identities=24% Similarity=0.365 Sum_probs=126.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..++.+||+++|++|||||||+++|+++.+.....++.+ .......+....+.+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 346789999999999999999999999887766444332 2223344455567888999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--------cchhhhhhHHHHHhccCCeEEEeCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++|||++++.+++.+...|...++...+++|+++|+||+|+.+.+.. ....+....+++.++. .++++|||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEEC
Confidence 99999999999999986799999887778999999999998764321 0023445667777763 37999999
Q ss_pred ccCCCchHHHHHHHHHHcCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~ 178 (670)
++|.||+++|+.+.+.++.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
No 11
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=6.6e-25 Score=207.86 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=125.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+.+||+++|++|||||||+++|+++.+....|++.........+....+.+.+|||||+++ ..+++++|++|
T Consensus 3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3467899999999999999999999999987644444333334445555678899999999876 56889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCC--CCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+.. .+.+ ..+....++..++. .++++|||++|
T Consensus 78 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKR-CSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSS-EEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcC-CeEEEEecccc
Confidence 9999999999999884 76666442 25899999999999953 3333 33445667666643 37999999999
Q ss_pred CCchHHHHHHHHHHc
Q 005908 162 IQVPDVFYYAQKAVL 176 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (670)
.||+++|+.+.+.+.
T Consensus 154 ~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVV 168 (178)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998765
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=7.2e-25 Score=204.94 Aligned_cols=162 Identities=24% Similarity=0.322 Sum_probs=132.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+.+||+++|++|||||||+++|+++.+.....++.+. ......+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 5799999999999999999999998887664443332 223344556678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
||++++.+++.+.. |...+... ..++|+++|+||+|+.+.+.+ ..+....+++.++. .+++++||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence 99999999999875 77777553 358999999999999766554 33455667777643 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
|+++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988763
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=3.3e-25 Score=211.39 Aligned_cols=166 Identities=25% Similarity=0.374 Sum_probs=134.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
....+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45679999999999999999999999988766433333 33334455566789999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+|||++++.+++.+...|...++...+++|+++|+||+|+.+. +.+ ..+....+++.++. .++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e 160 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE 160 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence 9999999999999855799999887779999999999999743 223 23445677777763 37999
Q ss_pred eCcc-cCCCchHHHHHHHHHHcC
Q 005908 156 CSAT-TMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 156 ~SA~-~~~gi~~l~~~i~~~~~~ 177 (670)
|||+ +|.||+++|+.+.+.++.
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999988753
No 14
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.92 E-value=5e-25 Score=215.15 Aligned_cols=173 Identities=26% Similarity=0.368 Sum_probs=138.7
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
.+...+.+||+|+|++|||||||+++|+++.+...+.++.+ .......+....+.+.+|||||++.+...+..+++.+|
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 34456789999999999999999999999988766444333 33333445566789999999999999998999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc------cchhhhhhHHHHHhccCCeEEEeCc
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++|+|||++++.+++.+...|+..++...+++|++||+||+|+.+.+.+ ....+....++..++. .++++|||
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa 161 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSS 161 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccC
Confidence 9999999999999999976799999887779999999999998764321 0123445667777763 37999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~ 179 (670)
++|.||+++|+.+.+.+....
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999987654
No 15
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.92 E-value=8.2e-25 Score=208.52 Aligned_cols=168 Identities=25% Similarity=0.340 Sum_probs=137.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
.++.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 357899999999999999999999998887664443333 3334455566788999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEE
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+|||++++.+++.+...|+..+....+++|+++|+||+|+.+.. .+ ..+....+++.++. .++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~ 158 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLE 158 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEE
Confidence 99999999999998767999998877789999999999987541 22 23344566666653 37999
Q ss_pred eCcccCCCchHHHHHHHHHHcCCC
Q 005908 156 CSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
|||++|.||+++|+.+.+.+..+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred ecCCCccCHHHHHHHHHHHHhccc
Confidence 999999999999999999987654
No 16
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=8.3e-25 Score=213.95 Aligned_cols=169 Identities=17% Similarity=0.242 Sum_probs=141.1
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
.....+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ +..+++.+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~ 99 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDS 99 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTT--GGGGCTTC
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHHcCCC
Confidence 3456799999999999999999999999998888888887664 55667767778999999999999888 78899999
Q ss_pred cEEEEEEECCCcccHHH-HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------CcccHHHHHHHHHHhCC
Q 005908 499 DVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------YTMAVQDSARVTQELGI 564 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~ 564 (670)
|++|+|||++++.+|.. +..|+..+..... +.|+++|+||+|+.+ .....+++.++++.+++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCP----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCT----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999998 6899999988753 699999999999975 23457889999999998
Q ss_pred CCcEEeecccC-C-hHHHHHHHHHHHhCCCCC
Q 005908 565 EPPIPVSMKSK-D-LNNVFSRIIWAAEHPHLN 594 (670)
Q Consensus 565 ~~~~~vSA~~g-~-v~~l~~~l~~~~~~~~~~ 594 (670)
.++++|||++| | ++++|+.+.+.+......
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 56999999999 9 999999999998765443
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=1.7e-24 Score=206.05 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=135.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
....+.+||+|+|++|||||||+++|++..+.....++.... ..........+.+.+|||||++.+...+..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345678999999999999999999999988877754433332 2334455556778899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc-cCC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMI 162 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~-~~~ 162 (670)
+++|||++++.+++.+.. |...+.. ...++|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||+ +|.
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCC
Confidence 999999999999999884 7777754 2358999999999999876665 3455677888887 379999999 999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+.+.+.+.
T Consensus 168 ~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 168 NVDKTFHDLVRVIR 181 (183)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 18
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=1.9e-24 Score=202.65 Aligned_cols=163 Identities=26% Similarity=0.422 Sum_probs=138.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+|+|++|||||||+|+|++..+...+.+|++.++....+..+|....+.+||++|++.+..+ +..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--HHHHhccCCEE
Confidence 4689999999999999999999999887777788888888888888876778899999999888877 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
++|+|++++.++..+..|+..+...... +.|+++|+||+|+.+.....+..+++++.++++ ++++||++| |++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEI 155 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 9999999999999999999988876543 689999999999966556678888999999975 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|+.|.+.+..
T Consensus 156 ~~~l~~~~~~ 165 (170)
T 1g16_A 156 FFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=6.7e-25 Score=209.84 Aligned_cols=163 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
...+.+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.+|||+|++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34567999999999999999999999999877755444333 233445566789999999999887764 6799999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc-ccC
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTM 161 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA-~~~ 161 (670)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....+++.++. ++++||| ++|
T Consensus 96 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFGC--LFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcCC--cEEEEeecCcc
Confidence 9999999999999998 4888886642 58999999999999766555 33455777777763 7999999 899
Q ss_pred CCchHHHHHHHHHHc
Q 005908 162 IQVPDVFYYAQKAVL 176 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (670)
.||+++|+.+.+.+.
T Consensus 171 ~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 171 EHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999998764
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=1.1e-24 Score=203.77 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=111.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 90 (670)
+.+||+++|++|||||||+++|.+..+....++..........+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 35899999999999999999999877654433322233334456667889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHH
Q 005908 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 168 (670)
|++++.+++.+.. |...+... .+++|+++|+||+|+.+.+.+ ..+....++...+ .++++|||++|.||+++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHH
Confidence 9999999999985 77777654 358999999999999877665 3344566777766 379999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
+.+.+.+.
T Consensus 156 ~~l~~~~~ 163 (166)
T 3q72_A 156 EGVVRQIR 163 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 21
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=215.61 Aligned_cols=167 Identities=28% Similarity=0.373 Sum_probs=117.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+|+|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++++...+..+++.+|++|
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 456799999999999999999999998876664433322 2234445566788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC------------CccchhhhhhHHHHHhccCCeEEE
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+|||++++.+++.+...|...++...+++|+++|+||+|+.... .+ ..+....+++.++. .++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~ 187 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPV--TYHRGQEMARSVGA-VAYLE 187 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcc--cHHHHHHHHHhcCC-CEEEE
Confidence 99999999999999767999998877789999999999997653 22 22345667777763 37999
Q ss_pred eCcccCCCchHHHHHHHHHHcCC
Q 005908 156 CSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 156 ~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
|||++|.||+++|+.+.+.+...
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887643
No 22
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=208.27 Aligned_cols=168 Identities=15% Similarity=0.255 Sum_probs=137.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC 498 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~a 498 (670)
....+||+|+|++|||||||+|+|++......+.++++.+.....+.+++....+.+||++|++.+.. + ...+++.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~ 97 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL--RDHCLQTG 97 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH--HHHHHHHC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh--HHHhhccC
Confidence 45679999999999999999999987655444445556556666677776667888999999977654 5 56778999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
|++|+|||++++.+|..+..|+..+....... +.|+++|+||+|+.+.+ ...++++++++.+++. ++++||++| |
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~ 174 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHN 174 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTBS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCCC
Confidence 99999999999999999999999988765433 69999999999998644 3467888899988875 999999999 9
Q ss_pred hHHHHHHHHHHHhCCC
Q 005908 577 LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 577 v~~l~~~l~~~~~~~~ 592 (670)
++++|+.+++.+...+
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887543
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=1.9e-24 Score=205.30 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=141.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+|+|+++.+...+.+|++..+ ...+..++....+.+||++|++.+..+ ...+++.+|+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~ 80 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDING 80 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTTTCSE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHHHhcCCE
Confidence 3569999999999999999999999888887778888766 566677766677889999999888777 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+++.+..|+..+....... ++|+++|+||+|+.+.+. ..++++++++.++++ ++++||++| |++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAV 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCHH
Confidence 999999999999999999999987765544 699999999999975443 478889999999986 999999999 999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 005908 579 NVFSRIIWAAEHPHLNI 595 (670)
Q Consensus 579 ~l~~~l~~~~~~~~~~~ 595 (670)
++|+.+.+.+.......
T Consensus 158 ~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 158 DVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999998765443
No 24
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=210.50 Aligned_cols=168 Identities=20% Similarity=0.338 Sum_probs=137.1
Q ss_pred ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
......+||+|+|.+|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ 101 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--TQSYYRS 101 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--HHHHHTT
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHHhh
Confidence 33466799999999999999999999999887777778777777777877765678899999999988887 7889999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|++|+|||++++.+|+.+..|+..+...... ++|+++|+||+|+.+.+ ...++++++++.+++.+++++||++|
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS---NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 99999999999999999999999998876532 69999999999997643 34678889999999855999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005908 576 DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~ 590 (670)
|++++|++|.+.+..
T Consensus 179 gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 179 NVEEAFLRVATELIM 193 (201)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=1.4e-24 Score=206.19 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=135.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+|+|++|||||||+++|+++.+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 34679999999999999999999998888777555444433 33344455688999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
+|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....++..++. +++++||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHH
Confidence 9999999999999985 87777543 247999999999999876665 34556777888763 79999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 005908 166 DVFYYAQKAVLHPTA 180 (670)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (670)
++|+.+.+.+.....
T Consensus 158 ~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 158 DVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999876543
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=1.7e-24 Score=202.41 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=129.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
++.+||+++|++|||||||+++|++..+....+++..... ....+....+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999999988766544333322 334455566889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++.+++.+.. |...+.... .++|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHH
Confidence 999999999999874 877776543 38999999999999765554 2344566666666 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (168)
T 1u8z_A 157 VFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 27
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=210.12 Aligned_cols=167 Identities=27% Similarity=0.379 Sum_probs=128.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
...+.+||+|+|++|||||||+++|++..+...++++.... .....+....+.+.+|||||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45678999999999999999999999998776654444332 23334445567899999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEE
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV 154 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (670)
|+|||++++.+++.+...|+..+....+++|+++|+||+|+... +.+ ..+....++..++. .+++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~ 172 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV--PEEAAKLLAEEIKA-ASYI 172 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccC--CHHHHHHHHHhcCC-cEEE
Confidence 99999999999999976799999887779999999999999753 222 33445667777663 3799
Q ss_pred EeCcccCCCchHHHHHHHHHHcC
Q 005908 155 ECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+|||++|.||+++|+.+.+.+..
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=202.16 Aligned_cols=162 Identities=23% Similarity=0.244 Sum_probs=120.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCcc--chhhhHHHhccCCEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV 86 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i 86 (670)
.+.+||+|+|++|||||||+++|++..+....++...+. .....+....+.+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999988766544433332 23334555567899999999987 456667889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
++|||++++.+++.+.. |...+... ..++|+++|+||+|+.+.+.+ . .+....++..++ .++++|||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREV-S-VEEGRACAVVFD--CKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCS-C-HHHHHHHHHHHT--SEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhcccccc-C-HHHHHHHHHHcC--CeEEEEecCCCCCH
Confidence 99999999999999884 88877764 348999999999999876665 3 334456666666 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (175)
T 2nzj_A 157 AELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=2.2e-24 Score=204.03 Aligned_cols=164 Identities=23% Similarity=0.286 Sum_probs=134.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
...+.+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 345679999999999999999999999988766544443322 333445567889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|.||
T Consensus 91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENV 165 (179)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence 99999999999999887 4888887643 58999999999999765554 2344566777766 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 166 ~~l~~~l~~~i~ 177 (179)
T 1z0f_A 166 EDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 30
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=2.6e-24 Score=208.25 Aligned_cols=164 Identities=25% Similarity=0.380 Sum_probs=133.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
...+||+|+|++|||||||+++|.++.+.... +++.........+....+.+.+|||||++++...+..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999999887664 33333333334455556889999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....+++.++. .++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 179 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISA-FGYLEC 179 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC--CHHHHHHHHHhCCC-cEEEEe
Confidence 999999999999966799999887779999999999999765 222 23345566666653 379999
Q ss_pred CcccCCCchHHHHHHHHHHc
Q 005908 157 SATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~ 176 (670)
||++|.||+++|+.+.+.++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998765
No 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.2e-24 Score=210.48 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=132.5
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
.......+||+|+|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34455679999999999999999999999887665433333222 2334445568899999999999988889999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+ ..+....++...+ .++++|||++|.
T Consensus 100 d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESD 174 (201)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCT
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCC
Confidence 9999999999999999887 4888887653 47999999999999765554 2344566666665 379999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+++.+.+.
T Consensus 175 gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 175 NVEKLFLDLACRLI 188 (201)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=210.17 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=129.8
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-Ce-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
......+||+|+|++|||||||+++|++..+.....++.+ .. .....+....+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 3345679999999999999999999999887665433322 22 223334445689999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
++|+|||++++.+++.+. .|+..+.... .++|++||+||+|+...+.+ . .+.+..+++.++. .++++|||++|.|
T Consensus 104 ~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~-~~~~~~SA~~g~g 179 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELREV-S-LAEAQSLAEHYDI-LCAIETSAKDSSN 179 (201)
T ss_dssp EEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC-SEEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccccc-C-HHHHHHHHHHcCC-CEEEEEeCCCCCC
Confidence 999999999999999988 4888887654 68999999999999875555 3 3445667777762 3799999999999
Q ss_pred chHHHHHHHHHHcC
Q 005908 164 VPDVFYYAQKAVLH 177 (670)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (670)
|+++|+++.+.+..
T Consensus 180 i~~l~~~l~~~i~~ 193 (201)
T 2hup_A 180 VEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 33
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=4.2e-24 Score=205.45 Aligned_cols=166 Identities=19% Similarity=0.284 Sum_probs=142.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+++|.+|||||||+|+|+++.+...+.+|++..+.. .+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 96 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRL--RPLSYADSD 96 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHH--hHhhccCCc
Confidence 4567999999999999999999999999877777888776653 4556656677889999999998887 788999999
Q ss_pred EEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC---cccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
++++|||++++.+|..+ ..|+..+..... +.|+++|+||+|+.+. ....++++++++.+++.+++++||++|
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 99999999999999997 678888876643 6999999999999753 344788899999999888999999999
Q ss_pred -ChHHHHHHHHHHHhCCC
Q 005908 576 -DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~ 592 (670)
|++++|+.+.+.+....
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 99999999999887544
No 34
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=8.5e-25 Score=212.32 Aligned_cols=165 Identities=25% Similarity=0.374 Sum_probs=133.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
....+||+|+|++|||||||+++|++..+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 35679999999999999999999999988766433333 23233445566789999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEE
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (670)
+|||++++.+++.+...|+..++...+++|+++|+||+|+.+. +.+ ..+....+++.++. .++++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e 181 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE 181 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCC-CEEEE
Confidence 9999999999999855799999887778999999999999742 223 23445677777763 37999
Q ss_pred eCcc-cCCCchHHHHHHHHHHc
Q 005908 156 CSAT-TMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 156 ~SA~-~~~gi~~l~~~i~~~~~ 176 (670)
|||+ +|.||+++|+.+.+.++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999998765
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=207.38 Aligned_cols=165 Identities=20% Similarity=0.225 Sum_probs=129.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchh-hhHHHhccCCE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA 85 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ 85 (670)
....+||+|+|++|||||||+++|++..+... .+++...+. ....++...+.+.+|||+|++.+.. +...+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 44679999999999999999999986543222 333333322 3344556678899999999987765 67788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ . .+....++..++ .++++|||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV-S-LEEGRHLAGTLS--CKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc-C-HHHHHHHHHHhC--CEEEEEcCCCCCC
Confidence 999999999999999885 888887643 48999999999999876665 3 344566777776 3799999999999
Q ss_pred chHHHHHHHHHHcCC
Q 005908 164 VPDVFYYAQKAVLHP 178 (670)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (670)
|+++|+.+.+.+...
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
No 36
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.3e-24 Score=202.43 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=141.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+ ...+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 83 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--TSTYYRGTH 83 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--CGGGGTTCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--HHHHhccCC
Confidence 356799999999999999999999999988777788887788888888866678899999999888877 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.++..+..|+..+..... +.|+++|+||+|+.+.+.. ......++...+++ ++++||++| |+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 158 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNV 158 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT----TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 99999999999999999999999887654 6999999999998865433 67788899999985 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=3.2e-24 Score=201.12 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=133.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
.+.+||+++|++|||||||+++|++..+.....++.+.+. ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999987666444444332 33445556788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--AIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence 999999999999987 488888765 468999999999999866554 3445566777766 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+.+.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 38
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=8.8e-25 Score=211.56 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=132.5
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
.++...+.+||+|+|++|||||||+++|++..+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34456678999999999999999999999999877654444332 23344556678999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|++|+|||++++.+++.+. .|...+... ..++|+++|+||+|+...+.+ ..+....++..++. +++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCC
Confidence 9999999999999999998 488888654 347899999999999876655 33445677777763 7999999999
Q ss_pred CCchHHHHHHHHHHcCCC
Q 005908 162 IQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (670)
.||+++|+.+.+.+....
T Consensus 172 ~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999886543
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=5.2e-24 Score=202.65 Aligned_cols=164 Identities=19% Similarity=0.351 Sum_probs=141.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|++|||||||+|+|++..+...+.+|++..+ ...+..++....+.+||++|++.+..+ ...+++.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 91 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGD 91 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHH--HHHHHhcCC
Confidence 45679999999999999999999999988888778887766 566777766667788999999988887 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecc-cC-C
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMK-SK-D 576 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~-~g-~ 576 (670)
++++|||++++.+|+.+..|+..+....... +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||+ +| |
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLN 168 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCCCC
Confidence 9999999999999999999999887754433 69999999999997643 4477889999999966 9999999 99 9
Q ss_pred hHHHHHHHHHHHh
Q 005908 577 LNNVFSRIIWAAE 589 (670)
Q Consensus 577 v~~l~~~l~~~~~ 589 (670)
++++|+.|.+.+.
T Consensus 169 v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 169 VDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998775
No 40
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.3e-24 Score=209.48 Aligned_cols=164 Identities=23% Similarity=0.255 Sum_probs=124.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCcc-chhhhHHHhccC
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRA 83 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~a 83 (670)
.....+||+|+|++|||||||+|+|++.. |....+++...+. ....+++..+.+.+|||+|+.. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 44567999999999999999999999754 4554444433332 3344555667889999999876 444556778899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|++|+|||++++.+|+.+.. |...+... .+++|+|||+||+|+...+.+ .. +....++..++ .++++|||++|
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~-~e~~~~a~~~~--~~~~e~SAk~g 187 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SV-SEGRACAVVFD--CKFIETSAAVQ 187 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CH-HHHHHHHHHHT--CEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eH-HHHHHHHHHcC--CEEEEEeCCCC
Confidence 99999999999999999885 88777653 247999999999999765555 33 33455666665 37999999999
Q ss_pred CCchHHHHHHHHHHc
Q 005908 162 IQVPDVFYYAQKAVL 176 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (670)
.||+++|+.+.+.+.
T Consensus 188 ~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 188 HNVKELFEGIVRQVR 202 (211)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 41
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.6e-24 Score=207.14 Aligned_cols=164 Identities=21% Similarity=0.319 Sum_probs=143.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|++|||||||+|+|+++.+...+.+|++.++....+.++|....+.+||++|++.+..+ +..+++.+|
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 100 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSAN 100 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHHhcCC
Confidence 456799999999999999999999999888777788887888788888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+ ...++++.+++..+++ ++++||++| |+
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 176 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV 176 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999998876543 69999999999997543 3367788888888875 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|+++.+.+.
T Consensus 177 ~~l~~~l~~~i~ 188 (201)
T 2ew1_A 177 EKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=6.6e-24 Score=201.18 Aligned_cols=168 Identities=19% Similarity=0.351 Sum_probs=135.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
.+..+||+|+|.+|||||||+|+|++..+.. .+.+|++.++....+..+|....+.+||++|++.+..+ +..+++.+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~ 84 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDA 84 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHccCC
Confidence 4567999999999999999999999988864 44577777777777777766678889999999988887 78889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
|++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+. ..++.+++++.++++ ++++||++| |
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 160 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLN 160 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence 9999999999999999999999988876542 699999999999986443 467788889888875 999999999 9
Q ss_pred hHHHHHHHHHHHhCCCC
Q 005908 577 LNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 577 v~~l~~~l~~~~~~~~~ 593 (670)
++++|+++.+.+.....
T Consensus 161 i~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999876543
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=206.98 Aligned_cols=165 Identities=21% Similarity=0.304 Sum_probs=134.6
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
....+.+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 3456679999999999999999999999988776555444332 334455556789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
+++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ . .+....++..++ .+++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRAEQWN--VNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccc-c-HHHHHHHHHHhC--CeEEEEeCCCCCC
Confidence 999999999999999874 888887654 38999999999999876554 3 344566667666 3799999999999
Q ss_pred chHHHHHHHHHHc
Q 005908 164 VPDVFYYAQKAVL 176 (670)
Q Consensus 164 i~~l~~~i~~~~~ 176 (670)
|+++|+++.+.+.
T Consensus 164 i~~l~~~l~~~i~ 176 (206)
T 2bov_A 164 VDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=4.1e-24 Score=204.66 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=134.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
.....+||+|+|++|||||||+++|++..+.....++.+... .........+.+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 344579999999999999999999999988666433333332 233444567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++|.||
T Consensus 98 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG--FEFFEASAKENINV 172 (189)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence 999999999999999874 888887653 58999999999999765554 3345677777776 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 173 ~~l~~~l~~~i~ 184 (189)
T 2gf9_A 173 KQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=5.2e-24 Score=204.91 Aligned_cols=166 Identities=25% Similarity=0.399 Sum_probs=146.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+ ...+++.+|
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 90 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH 90 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT--HHHHHTTCS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHHhhCC
Confidence 356799999999999999999999999988888888888888888888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+.. ....+++++.++++ ++++||++| |+
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 166 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV 166 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence 999999999999999999999999877643 5999999999999865443 67788899999986 999999999 99
Q ss_pred HHHHHHHHHHHhCC
Q 005908 578 NNVFSRIIWAAEHP 591 (670)
Q Consensus 578 ~~l~~~l~~~~~~~ 591 (670)
+++|++|.+.+...
T Consensus 167 ~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 167 EQSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=3.2e-24 Score=201.05 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=131.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
.+.+||+++|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999887766444333322 33444556789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ . .+....++...+ .+++++||++|.||++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCcccccc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 9999999999999884 87777654 468999999999999765544 2 344556666665 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+++.+.+.
T Consensus 159 l~~~i~~~~~ 168 (170)
T 1r2q_A 159 IFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 47
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=9.4e-25 Score=211.92 Aligned_cols=166 Identities=23% Similarity=0.323 Sum_probs=132.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 456899999999999999999999999887764443332 2244455566788889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+|||++++.+++.+...|...++...+++|+++|+||+|+...... ....+....+++.++. .++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC-cEEEEee
Confidence 9999999999999976799999887789999999999998765320 0122345566777663 3799999
Q ss_pred cccCCCchHHHHHHHHHH
Q 005908 158 ATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~ 175 (670)
|++|.||+++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 48
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=3.9e-24 Score=205.17 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=133.6
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (670)
+......+.+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 3445566789999999999999999999999987665333222 222 23344455689999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
.+|++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~ 167 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKT 167 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--CEEEEEeCCC
Confidence 9999999999999999999885 88888664 458999999999999765554 3344567777776 3799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 005908 161 MIQVPDVFYYAQKAVL 176 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (670)
|.||+++|+++.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 168 ACNVEEAFINTAKEIY 183 (191)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=2.9e-24 Score=204.76 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=132.2
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
+...++.+||+|+|++|||||||+++|++..+....+++..... ....+....+.+.+|||||++++...+..+++.+|
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 33456789999999999999999999999988776544433332 33445555678999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 85 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|.
T Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRA 166 (187)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCC
Confidence 9999999999999999874 877776543 38999999999999765554 2344566677766 379999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+++.+.+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=2.5e-24 Score=201.00 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=130.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+.+||+++|++|||||||+++|+++.+.....++... ......+....+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5799999999999999999999998877664443332 234444555667899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHH
Confidence 99999999999885 66666543 248999999999999765554 3344566777765 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
|+++.+.+.
T Consensus 157 ~~~l~~~~~ 165 (167)
T 1kao_A 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=204.55 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=132.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
...+.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345679999999999999999999999887655433333222 233344455889999999999998899999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
+++|||++++.+++.+. .|+..+....+++|+++|+||+|+...+.+ ..+....++...+. +++++||++|.||+
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMGI--QLFETSAKENVNVE 159 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence 99999999999999987 499999887778999999999999876554 33445667777763 79999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~~~ 170 (181)
T 3tw8_B 160 EMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=4.5e-24 Score=200.23 Aligned_cols=164 Identities=18% Similarity=0.314 Sum_probs=136.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+|+|++|||||||+|+|++..+...+.+|++.++....+...|....+.+||++|++.+..+ ...+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHhccCCE
Confidence 45799999999999999999999999888777788887777778888877778899999999888877 6778999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+ ...++.+++++.++.+ ++++||++| |++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIE 157 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence 99999999999999999999888765432 59999999999997643 3467888899998875 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=3e-24 Score=200.89 Aligned_cols=162 Identities=20% Similarity=0.265 Sum_probs=132.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+||+++|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999887666433333 222 33344455788999999999999889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
+|||++++.+++.+.. |+..+....++.|+++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|.||+++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHH
Confidence 9999999999998875 88888665568999999999999765554 3344567777776 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
|+++.+.+.
T Consensus 158 ~~~l~~~~~ 166 (168)
T 1z2a_A 158 FKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.91 E-value=3.6e-24 Score=200.79 Aligned_cols=163 Identities=16% Similarity=0.249 Sum_probs=126.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccccEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDVT 501 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~v 501 (670)
.+||+++|++|||||||+|+|.+..+...+.++++.+.....+..++....+.+||++|++.+.. + ...+++.+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~ 79 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL--QDHCLQTGDAF 79 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC----------CHHHHHCSEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh--hhhhhccCCEE
Confidence 58999999999999999999998887776666666666667777786677888999999988766 4 55678899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+. ....++.+++++.++++ ++++||++| |+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTRE 156 (169)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCHHH
Confidence 99999999999999999999998876543 6999999999999753 34477888899999985 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|+.+.+.+..
T Consensus 157 l~~~l~~~i~~ 167 (169)
T 3q85_A 157 LFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 55
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=7.5e-24 Score=200.96 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=132.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
...+.+||+++|++|||||||+++|++..+.... ++...... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3456799999999999999999999999877663 33222222 333445557899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+.+.+ ..+....+++..+ .+++++||++|.||
T Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 88 AIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNV 162 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCH
Confidence 99999999999999988 488888665 358999999999999876655 3344566776665 37999999999999
Q ss_pred hHHHHHHHHHHcC
Q 005908 165 PDVFYYAQKAVLH 177 (670)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (670)
+++|+++.+.+..
T Consensus 163 ~~l~~~l~~~~~~ 175 (181)
T 2efe_B 163 KEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=5.7e-24 Score=204.11 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=132.9
Q ss_pred CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE---eCCcccCC---------ceeEEEEeCCCCc
Q 005908 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPD---------RVPVTIIDTSSSL 70 (670)
Q Consensus 3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~i~Dt~G~~ 70 (670)
+|++......+||+|+|++|||||||+++|++..+.....++.+... ....+... .+.+.+|||||++
T Consensus 2 ~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred CCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 45555667789999999999999999999999887665333333221 12222222 6789999999999
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (670)
.+...+..+++.+|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....++..++
T Consensus 82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 158 (195)
T 3bc1_A 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG 158 (195)
T ss_dssp GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence 99999999999999999999999999999987 4888887654 58999999999999765544 3345567777776
Q ss_pred cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 149 EIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 149 ~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.+++++||++|.||+++|+.+.+.+.
T Consensus 159 --~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 --IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp --CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999988764
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=207.82 Aligned_cols=165 Identities=19% Similarity=0.315 Sum_probs=127.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
.....+||+|+|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 345679999999999999999999999887665333333222 333344556889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|||++++.+++.+. .|+..++... .++|+++|+||+|+.+.+.+ ..+....+++.+.. .++++|||++|.||
T Consensus 102 iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi 177 (192)
T 2il1_A 102 IILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCH
Confidence 99999999999999987 4888887654 47999999999999766554 23445666666533 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+.+.+.+.
T Consensus 178 ~~l~~~l~~~i~ 189 (192)
T 2il1_A 178 DEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 58
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=5.9e-24 Score=203.93 Aligned_cols=164 Identities=19% Similarity=0.321 Sum_probs=139.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 95 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAA 95 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--HHHHhccCC
Confidence 456799999999999999999999999988887788888888788888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+ ...++.+++++.+++. ++++||++| |+
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 171 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNV 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999998876433 69999999999997643 3467788899999886 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|++|.+.+.
T Consensus 172 ~~l~~~l~~~i~ 183 (191)
T 2a5j_A 172 EEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 59
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7.9e-24 Score=205.76 Aligned_cols=165 Identities=21% Similarity=0.340 Sum_probs=130.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhh-HhhhhchHhhccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALAS 497 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 497 (670)
....+||+|+|++|||||||+|+|++....... .++++.++....+.++|....+.+||++|++. +..+ ...+++.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l--~~~~~~~ 111 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQV 111 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH--HHCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhH--HHHHHhh
Confidence 345699999999999999999999976543222 24566566667777786666788999999876 3444 5667899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|++++|||++++.+|+.+..|...+....... ++|+++|+||+|+.+.+ ...++.+.++..++++ +++|||++|
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~--~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g~ 188 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQH 188 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence 999999999999999999999988887543222 69999999999997643 3356677888888875 999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
||+++|+.|.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999875
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=9.1e-24 Score=204.62 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=134.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 44679999999999999999999999988766443333322 3334445578999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .++++|||++|.||+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVK 159 (203)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 99999999999999884 888887654 58999999999999876555 3345667777776 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3.9e-24 Score=205.38 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=134.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+++|++..+.....++.+.+. ....+....+.+.+|||||++++...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 45679999999999999999999999987665444444333 3344556678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+.+.+ ..+....+++.++ .++++|||++|.||+
T Consensus 100 ilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIE 174 (192)
T ss_dssp EEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHH
Confidence 9999999999999987 4888887654 47999999999999765544 3345667777776 379999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+.+.+.+..
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 62
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=1e-23 Score=199.99 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=143.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 86 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--APMYYRGAA 86 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--THHHHTTCS
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--hHHHhccCC
Confidence 345699999999999999999999999988877788888787777888766778899999999988887 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+. ..++++++++..+++ ++++||++| |+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 162 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNV 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCH
Confidence 999999999999999999999998876543 689999999999976443 467888899888876 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 163 ~~l~~~l~~~~~~ 175 (181)
T 2efe_B 163 KEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987753
No 63
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=208.51 Aligned_cols=168 Identities=17% Similarity=0.296 Sum_probs=138.2
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
.....+||+|+|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ +..+++.+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 96 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL--PYSFIIGV 96 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--CGGGTTTC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH--HHHHHhcC
Confidence 345679999999999999999999999999888778887766 566666667788899999999888887 78899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
|++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+. ...+.+.+++.++++ ++++||++| |
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 173 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT--RVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARENQL 173 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence 99999999999999999999999987764433 689999999999976443 367888999999985 999999999 9
Q ss_pred hHHHHHHHHHHHhCCC
Q 005908 577 LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 577 v~~l~~~l~~~~~~~~ 592 (670)
++++|+.|.+.+....
T Consensus 174 v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 174 TQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999886544
No 64
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.6e-24 Score=207.51 Aligned_cols=166 Identities=23% Similarity=0.366 Sum_probs=131.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+..+||+|+|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++++...+..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 456899999999999999999999998876644333332 2333444556889999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....++..++. .++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 179 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPV--RTDDGRAMAVRIQA-YDYLEC 179 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCC--CHHHHHHHHHhcCC-CEEEEe
Confidence 999999999999966799999887779999999999999754 222 22334556666653 379999
Q ss_pred CcccCCCchHHHHHHHHHHcCC
Q 005908 157 SATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
||++|.||+++|+.+.+.++.+
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 65
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=8.6e-24 Score=200.00 Aligned_cols=164 Identities=19% Similarity=0.357 Sum_probs=143.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|.+|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 89 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAA 89 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--HHHHhccCC
Confidence 356799999999999999999999999988777788887787778888866678899999999888877 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 165 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENV 165 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999988876543 69999999999997543 3367888899988875 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|+++.+.+.
T Consensus 166 ~~l~~~l~~~i~ 177 (179)
T 1z0f_A 166 EDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998774
No 66
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=1.7e-24 Score=204.89 Aligned_cols=165 Identities=20% Similarity=0.197 Sum_probs=130.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccC-CceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
..+.+||+|+|++|||||||+++|+++.+.... +++..... ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456799999999999999999999998876543 33222222 2233333 35889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC---CCCC-EEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+|+|||++++.+++.+. .|+..+.... .+.| +++|+||+|+.+.+.+ ..+....+++.++ .+++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCC
Confidence 99999999999999887 4888886632 2455 8999999999765554 2344566777776 37999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 005908 162 IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (670)
.||+++|+++.+.+...
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=5.7e-24 Score=199.29 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=129.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
+.+||+++|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 568999999999999999999999987765444333322 333445567889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCC---CCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
|||++++.+++.+.. |+..+... .+++|+++|+||+|+... +.+ ..+....++...+ .+++++||++|.||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKG--LLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence 999999999999885 88777654 368999999999999765 333 3344566666665 37999999999999
Q ss_pred hHHHHHHHHHH
Q 005908 165 PDVFYYAQKAV 175 (670)
Q Consensus 165 ~~l~~~i~~~~ 175 (670)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 68
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.91 E-value=2.9e-24 Score=201.43 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=119.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-hhHHHhccCCEEEE
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL 88 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ii~ 88 (670)
.+||+++|++|||||||+++|++..+... .+++.........+....+.+.+|||||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998765443 2222222334445556678899999999988766 56678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCC--CCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~--~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++.+++.+.. |+..+....+ ++|+++|+||+|+.+.+.+ ..+....+++.++. ++++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcCC--cEEEecCccCCCHHH
Confidence 999999999999985 7777766543 8999999999999866655 34556777777763 799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+.+.+.+.
T Consensus 157 l~~~l~~~i~ 166 (169)
T 3q85_A 157 LFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=3.6e-24 Score=202.60 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=130.1
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (670)
|++......++.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 82 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 82 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH
Confidence 3344444456779999999999999999999999887766433333222 23334455678999999999999999999
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+++.+|++++|||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.+.+ ..+....++...+ .+++++|
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 157 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELN--VMFIETS 157 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEEEB
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcC--CeEEEEe
Confidence 9999999999999999999998874 77777553 358999999999999766554 2344455666665 3799999
Q ss_pred cccCCCchHHHHHHHHHHc
Q 005908 158 ATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~ 176 (670)
|++|.|++++|+.+.+.+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=2.8e-24 Score=211.32 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=138.4
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (670)
|+++........+||+|+|++|||||||+++|+.+.+...+.++.+.+. ....+....+.+.+|||||++.+...+..
T Consensus 4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (221)
T 3gj0_A 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83 (221)
T ss_dssp --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence 4556666777889999999999999999999877766555333333333 34445566789999999999999999999
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+++.+|++|+|||++++.+++.+. .|+..+....+++|+++|+||+|+.+.... .....++...+ .++++|||
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa 156 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISA 156 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBG
T ss_pred HHhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeC
Confidence 999999999999999999999998 499999887779999999999999765432 23344555555 37999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~ 179 (670)
++|.||+++|+++.+.+....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999986554
No 71
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=3.5e-24 Score=200.93 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=125.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999887665333333322 3344556678899999999998888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+ . .+....+++.++ .+++++||++|.||+
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVG--AKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHH
Confidence 9999999999999988 4888876532 47999999999999776555 3 344567777776 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 158 ~l~~~l~~~~~ 168 (170)
T 1z08_A 158 ELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 72
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=5.9e-24 Score=199.22 Aligned_cols=163 Identities=22% Similarity=0.292 Sum_probs=140.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+|+|+++.+...+.++.+..+....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~ 81 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQA 81 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--hHHhccCCCE
Confidence 35699999999999999999999999888877788887777777777766778899999999988887 7888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+ ...++..++++..+++ ++++||++| |++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVN 157 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999999999988876543 69999999999997543 3367788888888875 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|++|.+.+.
T Consensus 158 ~l~~~i~~~~~ 168 (170)
T 1r2q_A 158 EIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 73
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9e-24 Score=200.23 Aligned_cols=168 Identities=20% Similarity=0.274 Sum_probs=126.4
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (670)
.....+.+||+++|++|||||||+++|++..+... .+++..... ....+....+.+.+|||||++.+...+..+++.
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 34456789999999999999999999999887532 333222222 222344556789999999999998889999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
+|++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++|
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~ 158 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--LPFMETSAKTG 158 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEeCCCC
Confidence 999999999999999998874 888887654 58999999999999876655 3344566777766 37999999999
Q ss_pred CCchHHHHHHHHHHcCC
Q 005908 162 IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (670)
.||+++|+++.+.+...
T Consensus 159 ~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TTHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=1.6e-23 Score=197.92 Aligned_cols=168 Identities=15% Similarity=0.280 Sum_probs=139.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ ...+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh--HHHHHhcCCE
Confidence 45699999999999999999999999887777788887777777888866678899999999988887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.+.....++++++++.....+++++||++| |++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 99999999999999999999888765431 0116899999999999865566788888888555456999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|+.+.+.+..
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 75
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=8.5e-24 Score=197.60 Aligned_cols=162 Identities=20% Similarity=0.333 Sum_probs=137.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|.+|||||||+|+|.++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence 589999999999999999999999888777777776554 55667766778889999999888877 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.+. ..++.+++++.++..+++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 9999999999999999998887764433 699999999999976443 3677888888884445999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
|++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 76
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=203.84 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=133.5
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
.+...+.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34455679999999999999999999999988766444333222 3344455678999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
|++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++...+ .++++|||++|.
T Consensus 99 d~vi~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~ 173 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNG--LLFLETSALDST 173 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCC
Confidence 99999999999999998874 888886643 58999999999999765544 2344566666665 379999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+.+.+.+.
T Consensus 174 gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 174 NVELAFETVLKEIF 187 (193)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=8e-24 Score=202.60 Aligned_cols=164 Identities=21% Similarity=0.367 Sum_probs=142.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.++.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--TTAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--GGGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--HHHhccCCC
Confidence 456799999999999999999999999988777788877777777777766678899999999888877 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+. ..++++++++.+++. ++++||++| |+
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 172 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV 172 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999998876532 699999999999976433 367788999999975 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|++|.+.+.
T Consensus 173 ~~l~~~l~~~i~ 184 (189)
T 2gf9_A 173 KQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998774
No 78
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-23 Score=201.66 Aligned_cols=163 Identities=24% Similarity=0.390 Sum_probs=140.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~ 92 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCcchhHH--HHHhcCCCCE
Confidence 45699999999999999999999999887777788876653 45667766678889999999888887 7789999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.+|..+. .|+..+..... +.|+++|+||+|+.+. ....+++.++++.++..+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 99999999999999987 78888887643 6999999999999763 234678888999999866
Q ss_pred cEEeecccC-ChHHHHHHHHHHHhC
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
++++||++| |++++|++|.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999 999999999998764
No 79
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=202.25 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=135.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34579999999999999999999999887766433333222 3334444568899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....++..++ .+++++||++|.||+
T Consensus 93 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVE 167 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHH
Confidence 99999999999999885 88888665 347999999999999877665 3345577777776 379999999999999
Q ss_pred HHHHHHHHHHcCC
Q 005908 166 DVFYYAQKAVLHP 178 (670)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (670)
++|+++.+.+...
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 80
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=7.6e-24 Score=198.14 Aligned_cols=162 Identities=15% Similarity=0.286 Sum_probs=141.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|++|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+ ...+++.+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 80 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQA 80 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--HHHHhcCCCE
Confidence 35699999999999999999999999888777788887787788888766678899999999888887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVS 155 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Confidence 9999999999999999999998877652 69999999999997643 3467788899999985 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T 1z2a_A 156 EVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 81
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=1.6e-23 Score=203.45 Aligned_cols=164 Identities=23% Similarity=0.352 Sum_probs=144.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+|+|.+..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHhccCCCE
Confidence 45799999999999999999999999988877788888888888888866678899999999988887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++++.++..+..|+..+...... +.|+++|+||+|+.+.+ ...+....+++..+++ ++++||++| |++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE 159 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999999999998876533 69999999999998744 3467788888888875 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|++|.+.+..
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 82
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-23 Score=202.39 Aligned_cols=163 Identities=19% Similarity=0.337 Sum_probs=142.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--TTAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--HHHhhcCCCE
Confidence 45799999999999999999999999988777788877777777777766778899999999988887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+ ...+.++++++.++++ ++++||++| |++
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK 159 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCHH
Confidence 99999999999999999999998876532 69999999999998744 3467888899999985 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 83
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=1.3e-23 Score=196.92 Aligned_cols=162 Identities=21% Similarity=0.308 Sum_probs=141.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
+.+||+|+|.+|||||||+|+|++..+...+.++.+..+....+...+....+.+||++|.+.+..+ ...+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcc--cHhhCcCCCEE
Confidence 4699999999999999999999999987777788887777777777766678889999999888887 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+. ..+..+.+++.++.+ ++++||++| |+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHH
Confidence 9999999999999999999988876433 689999999999986433 367788888888875 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+.|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 84
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9.3e-24 Score=202.92 Aligned_cols=166 Identities=18% Similarity=0.294 Sum_probs=145.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 90 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--hHHHhccCCE
Confidence 34699999999999999999999999988777788887777777888866778899999999888887 7888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
+|+|||++++.++..+..|+..+....... ++|+++|+||+|+.+.....++..++++..++. ++++||++| |+++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence 999999999999999999999887765333 699999999999976555677888899988876 999999999 9999
Q ss_pred HHHHHHHHHhCC
Q 005908 580 VFSRIIWAAEHP 591 (670)
Q Consensus 580 l~~~l~~~~~~~ 591 (670)
+|++|.+.+...
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988643
No 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.6e-24 Score=204.66 Aligned_cols=163 Identities=19% Similarity=0.362 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
++.+||+|+|++|||||||+++|.+..+...+.+|++.++....+.++|....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--HHHHHhcCCE
Confidence 46799999999999999999999998877666677777777777777766678899999999888887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+ ...++++++++.++++ ++++||++| |++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE 159 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999999999998876433 69999999999998644 3477888999999975 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|+.|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 86
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.9e-24 Score=200.20 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=128.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+.+||+++|++|||||||+|+|+++.+.... ++....+..........+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999998876553 333333333334455567899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ ..+....+...++ .+++++||++|.||++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWK--CAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEecCCCCcCHHH
Confidence 99999999988874 77666553 247999999999999766554 2334456666665 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+++.+.+.
T Consensus 157 l~~~l~~~~~ 166 (172)
T 2erx_A 157 LFQELLNLEK 166 (172)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 87
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=205.57 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=125.7
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe--EeCCcccCCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
+....+.+||+|+|++|||||||+++|++..+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 3445668999999999999999999999998765533333222 23344555678899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCC------CCCccchhhhhhHHHHHhccCCeEEEe
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|++|+|||++++.+++.+. .|+..++... .++|+++|+||+|+.+ .+.+ ..+....++..++ .++++|
T Consensus 102 d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~ 176 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCET 176 (199)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEEC
T ss_pred CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcC--CeEEEe
Confidence 9999999999999999987 4888887643 4799999999999862 2333 3344566777776 379999
Q ss_pred CcccCCCchHHHHHHHHHHcC
Q 005908 157 SATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~ 177 (670)
||++|.||+++|+++.+.+..
T Consensus 177 SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 88
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=197.30 Aligned_cols=163 Identities=18% Similarity=0.305 Sum_probs=125.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh--HhhhhchHhhccccc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--VKKILSNKEALASCD 499 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~--~~~~~~~~~~~~~ad 499 (670)
+.+||+|+|++|||||||+|+|.+..+...+. +++.++....+..+|....+.+||++|++. +..+ ...+++.+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS--QESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH--HHHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh--HHhhcccCC
Confidence 46899999999999999999999998876653 455555666677776667888999999877 3444 567889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+ ...++.+.++..++++ ++++||++| |+
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 156 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQAD--HVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQHNV 156 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence 9999999999999999999998887754332 69999999999998644 3366777888888875 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 89
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.8e-24 Score=206.23 Aligned_cols=165 Identities=19% Similarity=0.330 Sum_probs=144.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.++.+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ ...+++.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 97 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--TTAYYRGAM 97 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--HHHHHTTCC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHccCC
Confidence 356799999999999999999999999888777777777788788888877888999999999888887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+ ...++.+.+++.++++ ++++||++| |+
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 173 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV 173 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999999876533 69999999999997643 3477788899999985 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|+.|.+.+..
T Consensus 174 ~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 174 RQAFERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 90
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=1.1e-23 Score=199.76 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=132.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
...+.+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345779999999999999999999999988777555443332 2233444467899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHH-Hhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
++|||++++.+++.+.. |+..+ +.. ..++|+++|+||+|+...+.+ ..+....++...+ .+++++||++|.||
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHH--VAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEecCCCCCCH
Confidence 99999999999999885 77666 433 348999999999999776555 2344566666665 37999999999999
Q ss_pred hHHHHHHHHHHcC
Q 005908 165 PDVFYYAQKAVLH 177 (670)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (670)
+++|+++.+.+..
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 91
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=9.5e-24 Score=197.77 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|++|||||||+|+|++..+...+.++.+.++....+..++....+.+||++|++.+..+ +..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--hhhhhccCcEEE
Confidence 589999999999999999999999888777788887777777777766678889999999888887 788899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC----cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----TMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
+|+|++++.++..+..|+..+...... +.|+++|+||+|+.+. ....+..+++++..+++ ++++||++| |+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 156 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999988876532 6999999999999753 23367788888888876 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|++|.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 92
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=6.6e-24 Score=203.17 Aligned_cols=165 Identities=19% Similarity=0.318 Sum_probs=128.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccch-hhhHHHhccC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRA 83 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~a 83 (670)
...++.+||+|+|++|||||||+++|+++.+.....++.+ ... ....+....+.+.+|||||++++. ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 3456679999999999999999999999887765333333 222 333444556899999999999887 7888999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|++|+|||++++.+++.+.. |...+... ..++|+++|+||+|+.+.+.+ ..+....++..++ .+++++||++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~ 169 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHS--MPLFETSAKNP 169 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEECCSSSG
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcC--CEEEEEeCCcC
Confidence 99999999999999999885 88888665 358999999999999766554 3344567777766 37999999999
Q ss_pred ---CCchHHHHHHHHHHc
Q 005908 162 ---IQVPDVFYYAQKAVL 176 (670)
Q Consensus 162 ---~gi~~l~~~i~~~~~ 176 (670)
.||+++|+.+.+.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999877653
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=203.99 Aligned_cols=165 Identities=17% Similarity=0.297 Sum_probs=135.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 100 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAK 100 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHHHHHHCS
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH--HHHHhcCCC
Confidence 456799999999999999999999999888777788887787788888866678899999999988887 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.+.+. ..++++++++.+...+++++||++| |+
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 999999999999999999998888776543 699999999999976433 3667788888753345999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|+.|.+.+.
T Consensus 178 ~~l~~~l~~~i~ 189 (192)
T 2il1_A 178 DEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 94
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7e-24 Score=204.32 Aligned_cols=164 Identities=21% Similarity=0.306 Sum_probs=130.8
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
+...+.+||+|+|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345678999999999999999999999998876644433332 23344555678899999999988 7778899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC-
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI- 162 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~- 162 (670)
+++|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....+++.++ .++++|||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~ 176 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--CAFYECSACTGEG 176 (196)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCc
Confidence 999999999999999874 87777653 358999999999999776554 3344566777775 379999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+++.+.+.
T Consensus 177 gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 177 NITEIFYELCREVR 190 (196)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998765
No 95
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=2.2e-23 Score=199.06 Aligned_cols=163 Identities=20% Similarity=0.358 Sum_probs=139.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+|+|++|||||||+|+|++..+...+.+|+...+ ...+..++....+.+||++|++.+..+ ...+++.+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTT--HHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHH--HHHHHhcCCEE
Confidence 469999999999999999999999988777777775443 355666656667889999999998888 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.....+..+.+++.++++ ++++||++| |++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVDDA 156 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 99999999999999999999998865544 799999999999987666788899999999976 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|++|.+.+..
T Consensus 157 ~~~l~~~~~~ 166 (189)
T 4dsu_A 157 FYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 96
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=204.76 Aligned_cols=165 Identities=21% Similarity=0.362 Sum_probs=133.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+|+|.+|||||||+|+|+++.+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--HHHHhccCC
Confidence 456799999999999999999999999988877788887787788888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+...+ ....++.++++..++. ++++||++| |+
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~gi 175 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV 175 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999988776543 69999999999997543 3367788888888876 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 97
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=8.6e-24 Score=200.38 Aligned_cols=167 Identities=18% Similarity=0.351 Sum_probs=141.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+..+|....+.+||++|++.+..+ ...+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 82 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGH 82 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHhhCC
Confidence 346799999999999999999999999888777788877665 56667755678889999999888877 778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.+ ...++.+.++...++. ++++||++| |+
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv 159 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence 9999999999999999999998886554333 69999999999997643 3367788888888875 999999999 99
Q ss_pred HHHHHHHHHHHhCCC
Q 005908 578 NNVFSRIIWAAEHPH 592 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~ 592 (670)
+++|++|.+.+....
T Consensus 160 ~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999886433
No 98
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=1.2e-23 Score=198.71 Aligned_cols=164 Identities=21% Similarity=0.269 Sum_probs=128.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999887665433333322 2333445567899999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
++|||++++.+++.+. .|...+.... .++|+++|+||+|+. .+.+ ..+....++..... .+++++||++|
T Consensus 84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQV--STEEAQAWCRDNGD-YPYFETSAKDA 158 (177)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccc-cccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 9999999999999887 4888776532 578999999999997 3333 23445566654433 37999999999
Q ss_pred CCchHHHHHHHHHHcC
Q 005908 162 IQVPDVFYYAQKAVLH 177 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (670)
.||+++|+.+.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 99
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-23 Score=203.82 Aligned_cols=164 Identities=25% Similarity=0.412 Sum_probs=142.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....++|+|+|++|||||||+|+|++..+...+.+|++.++....+.++|....+.+||++|++.+..+ +..+++.+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 94 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--TTAYYRGAM 94 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--CHHHHTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCC
Confidence 456799999999999999999999999887777788888888888888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.......+..+++++.++++ ++++||++| |++
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN 170 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 999999999999999999999988876543 589999999999965555577888899999875 999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|++|.+.+.
T Consensus 171 ~l~~~l~~~~~ 181 (213)
T 3cph_A 171 EIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 100
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.1e-23 Score=202.25 Aligned_cols=164 Identities=20% Similarity=0.330 Sum_probs=142.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|.+|||||||+|+|++..+...+.++.+..+....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 97 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--APMYYRGSA 97 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--THHHHTTCS
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--hHHhhccCC
Confidence 356799999999999999999999999887777788887777777888877788999999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. ....++++++++.++++ ++++||++| |+
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 173 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINI 173 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBSH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCH
Confidence 999999999999999999999998876532 6999999999999753 33467888899888875 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|+.|.+.+.
T Consensus 174 ~~l~~~l~~~i~ 185 (192)
T 2fg5_A 174 EELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 101
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=1.2e-23 Score=200.54 Aligned_cols=165 Identities=19% Similarity=0.339 Sum_probs=143.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 84 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAA 84 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHHhcCC
Confidence 356799999999999999999999999988887788887777788888866678889999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+ ....+..++++..+++ ++++||++| |+
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 160 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENV 160 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCCH
Confidence 999999999999999999999888776443 69999999999997533 3367788888888876 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|+++.+.+..
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 102
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=3.1e-23 Score=200.71 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=139.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-----------------------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN----------------------------- 471 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~----------------------------- 471 (670)
++.+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999999887777888887887778877544
Q ss_pred --------eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908 472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543 (670)
Q Consensus 472 --------~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~ 543 (670)
..+.+||++|++.+..+ +..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI--VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT--HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHHH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECC
Confidence 78889999999888887 7888999999999999999999999999999888764 58999999999
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
|+.......++++++++..+++ ++++||++| |++++|++|.+.+.
T Consensus 158 D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Confidence 9444445578889999998875 999999999 99999999998765
No 103
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=1.1e-23 Score=200.69 Aligned_cols=161 Identities=17% Similarity=0.294 Sum_probs=134.0
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
.....+||+|+|++|||||||+|+|+++.+...+.+| ...+. ..+.++|....+.+||++|++.+. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK-KEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEE-EEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEE-EEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence 3456799999999999999999999999988776666 33343 667777666788899999987654 66789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
|++++|||++++.+|+.+..|+..+....... +.|+++|+||+|+.. .....++++++++.++..+++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGG--GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence 99999999999999999999999998764322 689999999999952 2344778899999998556999999999
Q ss_pred -ChHHHHHHHHHHHhC
Q 005908 576 -DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~ 590 (670)
|++++|+++.+.+..
T Consensus 165 ~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVA 180 (184)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 999999999998754
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.5e-24 Score=208.13 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=134.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 34579999999999999999999999887665322222 222 3444556788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+.+.+ ..+....++..++. ++++|||++|.||+
T Consensus 100 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLGF--DFFEASAKENISVR 174 (191)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence 99999999999999885 998887754 58999999999999766555 34456677777763 79999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+.+.+.+..
T Consensus 175 ~l~~~l~~~i~~ 186 (191)
T 3dz8_A 175 QAFERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 105
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=1.2e-23 Score=200.49 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=137.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+|+|.+..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhcCCCcE
Confidence 46799999999999999999999999888777778776554 44666766778899999999988887 7788999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.+|+.+ ..|+..+..... +.|+++|+||+|+.+. ....++++++++.++..+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 9999999999999998 688888877643 6999999999999742 234677888999988656
Q ss_pred cEEeecc-cC-ChHHHHHHHHHHHh
Q 005908 567 PIPVSMK-SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 567 ~~~vSA~-~g-~v~~l~~~l~~~~~ 589 (670)
++++||+ +| |++++|+.+.+.+.
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHh
Confidence 9999999 68 99999999998875
No 106
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=1e-23 Score=196.84 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=137.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|++|||||||+|+|.++.+...+.+|++..+ ...+..++....+.+||++|++.+..+ ...+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCEEE
Confidence 58999999999999999999999988877777776544 456667766677889999999888877 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDEL 156 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHHHH
Confidence 9999999999999999999888765433 69999999999987543 3467788889888876 999999999 99999
Q ss_pred HHHHHHHHh
Q 005908 581 FSRIIWAAE 589 (670)
Q Consensus 581 ~~~l~~~~~ 589 (670)
+++|.+.+.
T Consensus 157 ~~~l~~~~~ 165 (167)
T 1kao_A 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 107
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=1.8e-23 Score=203.09 Aligned_cols=164 Identities=17% Similarity=0.270 Sum_probs=133.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999988766433333 222 2334445567899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+.... +++|+++|+||+|+...+.+ ..+....++...+ .+++++||++|.||+
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVE 159 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence 99999999999999885 888887653 57999999999999876655 3344566666665 379999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+++.+.+..
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=1.3e-23 Score=196.43 Aligned_cols=161 Identities=21% Similarity=0.333 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|++|||||||+|+|.+..+.... ++.+..+ ...+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhh--hhhhhhhCCEEE
Confidence 489999999999999999999987765443 3444433 345566666778889999999988887 778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
+|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+. ..+..+.++..++++ ++++||++| |++++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQAL 154 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHHHH
Confidence 9999999999999999999988764433 699999999999986443 477778888888875 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
|+++.+.+..
T Consensus 155 ~~~l~~~~~~ 164 (166)
T 3q72_A 155 FEGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 109
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=4e-24 Score=202.27 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=140.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+.+||+|+|++|||||||+|+|.++.+...+.+|++.++....+.++++ ...+.+||++|++.+..+ +..+++.+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--LDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--HHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--hhHHHhhCC
Confidence 45799999999999999999999998887665678777777788888753 468889999999888877 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+++.+..|+..+...........|+++|+||+|+.+.+ ...++.+++++.++++ ++++||++| |+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 160 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTGDSV 160 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence 99999999999999999999988876532100024489999999997643 3467788899998875 999999999 99
Q ss_pred HHHHHHHHHHHhCCC
Q 005908 578 NNVFSRIIWAAEHPH 592 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~ 592 (670)
+++|++|.+.+....
T Consensus 161 ~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 161 FLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886543
No 110
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.4e-24 Score=204.91 Aligned_cols=163 Identities=15% Similarity=0.290 Sum_probs=103.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+... .+++..... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999998887654 232221121 2233444568999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+... .+++|+++|+||+|+.+.+.+ ..+....+++.++ .++++|||++|.||+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVE 159 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence 99999999999999885 88888764 357999999999999876655 3345567777776 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+.+.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 111
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=2.5e-23 Score=193.87 Aligned_cols=160 Identities=21% Similarity=0.332 Sum_probs=130.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
+.+||+++|++|||||||+++|.+..+....+++.... .....+....+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999988776644433332 23344445578899999999999989999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
||++++.+++.+. .|...+.... .++|+++|+||+|+... .. ..+....+.+.++ .+++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYG--IPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHH
Confidence 9999999999987 4888886643 37999999999999763 22 3455667777776 37999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
++++.+.+.
T Consensus 156 ~~~l~~~~~ 164 (166)
T 2ce2_X 156 FYTLVREIR 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 112
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=201.75 Aligned_cols=166 Identities=18% Similarity=0.274 Sum_probs=143.0
Q ss_pred ccCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 418 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
+...+.+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|.+.+..+ +..+++.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ 97 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI--TSAYYRG 97 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT--HHHHHTT
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhcc
Confidence 33566799999999999999999999999988887788887777777777766778889999999888877 7888999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 498 ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
+|++|+|||++++.++..+..|+..+...... +.|+++|+||+|+...+ ...++++.+++..++. ++++||++|
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 173 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDST 173 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence 99999999999999999999999888765432 69999999999997643 3467788888888875 999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
|++++|+.|.+.+.
T Consensus 174 gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 174 NVELAFETVLKEIF 187 (193)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 113
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=4.4e-23 Score=199.66 Aligned_cols=162 Identities=16% Similarity=0.256 Sum_probs=128.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCc---------------------------
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDR--------------------------- 58 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------------------- 58 (670)
...+.+||+|+|++|||||||+++|++..+.....++.+... ....+....
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 345789999999999999999999999988766444443322 112222222
Q ss_pred ----------eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 59 ----------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 59 ----------~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
+.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+. .|+..+.... ++|+++|+||+| .
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~-~~piilv~NK~D-~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISS-NYIIILVANKID-K 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHS-CCEEEEEEECTT-C
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhC-CCcEEEEEECCC-c
Confidence 88999999999999999999999999999999999999999987 4888887654 499999999999 4
Q ss_pred CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
..+.+ ..+.+..++...+ .+++++||++|.||+++|+++.+.+.
T Consensus 160 ~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 160 NKFQV--DILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp C-CCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccC--CHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 33443 3345566777765 37999999999999999999988764
No 114
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=4.2e-23 Score=197.99 Aligned_cols=165 Identities=13% Similarity=0.257 Sum_probs=141.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceE-EEEEEcCCC---------ceEEEEEecCChhhHhhhh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKIL 489 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~-~~~vd~~g~---------~~~~~i~d~~g~~~~~~~~ 489 (670)
....+||+|+|++|||||||+|+|.+..+...+.+|.+.++. ...+..++. ...+.+||++|++.+..+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~- 86 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL- 86 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH-
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH-
Confidence 356799999999999999999999999887777777777666 666777654 568889999999888887
Q ss_pred chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcE
Q 005908 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPI 568 (670)
Q Consensus 490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 568 (670)
+..+++.+|++++|+|++++.++..+..|+..+....... ++|+++|+||+|+.+.+ ...+.++++++.++++ ++
T Consensus 87 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 162 (195)
T 3bc1_A 87 -TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YF 162 (195)
T ss_dssp -HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EE
T ss_pred -HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EE
Confidence 7889999999999999999999999999999988765433 69999999999997643 3467888899999885 99
Q ss_pred EeecccC-ChHHHHHHHHHHHh
Q 005908 569 PVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 569 ~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
++||++| |++++|+.|.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999 99999999998875
No 115
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.91 E-value=1e-23 Score=203.37 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=122.8
Q ss_pred CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc
Q 005908 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (670)
Q Consensus 3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (670)
+..........||+|+|++|||||||+++|++..+.. .+.++.+.... .+...++.+.+|||||++.+...+..+++
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 3445566778999999999999999999999999877 54444443322 34567899999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhc------C---CCCCEEEEEeCCCCCCCCCccchhhhhhHHH-----HHh
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQF 147 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~------~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~ 147 (670)
.+|++|+|||++++.+++.+.. |+..+... . +++|+++|+||+|+...... .+....+. +..
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDH 161 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTS
T ss_pred cCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCC
Confidence 9999999999999999999985 55555332 1 27999999999999875332 11111111 222
Q ss_pred ccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 148 REIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 148 ~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+ .++++|||++|.||+++|+.+.+.+..
T Consensus 162 ~--~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 162 P--FVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp C--EEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred e--eEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 2 379999999999999999999988753
No 116
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=1.1e-23 Score=199.94 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=117.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC--eEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
..+.+||+++|++|||||||+++|++..+.....++.+. ......+. ...+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 456799999999999999999999998876664333322 22233333 346789999999999998888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...... ...+....++..... .++++|||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKN 161 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTT
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecCC
Confidence 999999999999999874 877775532 58999999999999654332 233445666664443 3799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 005908 161 MIQVPDVFYYAQKAVL 176 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (670)
|.||+++|+++.+.+.
T Consensus 162 ~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 162 AINVDTAFEEIARSAL 177 (182)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 117
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=203.31 Aligned_cols=165 Identities=18% Similarity=0.292 Sum_probs=131.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 102 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI--AKSYFRKAD 102 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH--HHHHHHHCS
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh--HHHHHhhCC
Confidence 356799999999999999999999999887777778777777777888866678889999999888877 788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------CcccHHHHHHHHHHhCCCCcEEeec
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------YTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.+ .....+..+++++..+++ ++++||
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA 178 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA 178 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence 999999999999999999999888776433 589999999999962 233467788899988885 999999
Q ss_pred ccC-ChHHHHHHHHHHHhC
Q 005908 573 KSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~~ 590 (670)
++| |++++|++|.+.+..
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 999 999999999998753
No 118
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=2.6e-23 Score=198.59 Aligned_cols=161 Identities=20% Similarity=0.328 Sum_probs=129.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.+.+||+|+|++|||||||+|+|++..+....+++.... .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999998877755444332 2334455566789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
|||++++.+++.+.. |...+... ..++|+++|+||+|+.... + ..+....++..++ .+++++||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSRT-V--DTKQAQDLARSYG--IPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSCS-S--CHHHHHHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCcccc-c--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 999999999999885 77777653 3489999999999997432 2 3455677777776 3799999999999999
Q ss_pred HHHHHHHHHc
Q 005908 167 VFYYAQKAVL 176 (670)
Q Consensus 167 l~~~i~~~~~ 176 (670)
+|+++.+.+.
T Consensus 156 l~~~l~~~~~ 165 (189)
T 4dsu_A 156 AFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 119
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=1e-23 Score=205.87 Aligned_cols=166 Identities=18% Similarity=0.345 Sum_probs=140.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|.++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 83 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRL--RPLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHH--HHhhccCCCE
Confidence 45799999999999999999999999888777788876654 45667766678899999999888887 7778999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc---------cHHHHHHHHHHhCCCCcEEe
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---------AVQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~v 570 (670)
+|+|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+... ..++++++++.++..+++++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999987 79888887653 699999999999976432 46778889999997669999
Q ss_pred ecccC-ChHHHHHHHHHHHhCCCC
Q 005908 571 SMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
||++| |++++|+++.+.+..+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC--
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhh
Confidence 99999 999999999999876543
No 120
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=2.2e-23 Score=194.81 Aligned_cols=163 Identities=23% Similarity=0.405 Sum_probs=136.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|.+|||||||+|+|.+..+...+.+|++..+. ..+..++....+.+||++|++.+..+ +..+++.+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHH--HHHHhhcCCEE
Confidence 3589999999999999999999999887777777776554 34556655668889999999888877 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDK 156 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHH
Confidence 99999999999999999999988776544 69999999999997643 3467888888888875 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 005908 580 VFSRIIWAAEH 590 (670)
Q Consensus 580 l~~~l~~~~~~ 590 (670)
+|+++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 121
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9e-24 Score=208.00 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=128.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
....+||+|+|++|||||||+++|++..+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999988765333222 222 2333444558999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+. .|+..+... ..++|++||+||+|+...+.+ . .+....++...+ .+++++||++|.||+
T Consensus 90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRAV-P-TEESKTFAQENQ--LLFTETSALNSENVD 164 (223)
T ss_dssp EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCCC-CCCHH
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999999988 488888765 357999999999999765555 3 344566776665 379999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 005908 166 DVFYYAQKAVLHPT 179 (670)
Q Consensus 166 ~l~~~i~~~~~~~~ 179 (670)
++|+++.+.+....
T Consensus 165 ~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 165 KAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987543
No 122
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=2.9e-23 Score=198.67 Aligned_cols=165 Identities=18% Similarity=0.317 Sum_probs=139.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh-hhhchHhhcccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASC 498 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~a 498 (670)
....+||+|+|.+|||||||+|+|+++.+...+.+|++.++....+.+++....+.+||++|++.+. .+ ...+++.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~ 94 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM--VQHYYRNV 94 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT--HHHHHTTC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh--hHHHhcCC
Confidence 3467999999999999999999999999888877888888888888888666788999999998887 66 77889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC--
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-- 575 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-- 575 (670)
|++|+|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.+ ...+..+++++.+++. ++++||++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 171 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND 171 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence 99999999999999999999999998875433 69999999999997643 3467788899988875 999999996
Q ss_pred --ChHHHHHHHHHHHh
Q 005908 576 --DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 --~v~~l~~~l~~~~~ 589 (670)
|++++|+.|.+.+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 69999999987664
No 123
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.90 E-value=1.6e-23 Score=196.34 Aligned_cols=161 Identities=16% Similarity=0.298 Sum_probs=127.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+++|++|||||||+++|++..+.... +++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999998876553 33322222 333444557889999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|||++++.+++.+. .|+..+.... +++|+++|+||+|+. .+.+ ..+....+++.++ .+++++||++|.||+++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-TRVV--TADQGEALAKELG--IPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCT-TCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCC-cCcc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHH
Confidence 99999999999887 4888886653 589999999999994 3333 3345567777776 37999999999999999
Q ss_pred HHHHHHHHcC
Q 005908 168 FYYAQKAVLH 177 (670)
Q Consensus 168 ~~~i~~~~~~ 177 (670)
|+.+.+.+..
T Consensus 156 ~~~l~~~~~~ 165 (170)
T 1g16_A 156 FFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 124
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.1e-23 Score=200.37 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=133.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999999988766444333322 3344555678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. +.+ ..+....+++..+ .+++++||++|.||
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-REV--DRNEGLKFARKHS--MLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-CCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-ccc--CHHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence 9999999999999988 4888887653 4799999999999953 233 2344566667665 37999999999999
Q ss_pred hHHHHHHHHHHcCC
Q 005908 165 PDVFYYAQKAVLHP 178 (670)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (670)
+++|+++.+.+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 166 QCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 125
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=3.8e-23 Score=200.77 Aligned_cols=167 Identities=17% Similarity=0.276 Sum_probs=141.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--HHHHHhCCcE
Confidence 46799999999999999999999999988887788887787788888876778999999999888887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+|+|||++++.++..+..|+..+....... ..+.|+++|+||+|+.+.....+....+++.....+++++||++| |++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998887654210 016899999999999865556777888887444446999999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|++|.+.+.
T Consensus 164 ~l~~~l~~~~~ 174 (207)
T 1vg8_A 164 QAFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 126
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=6.4e-24 Score=204.37 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=127.9
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-----------CCCCeE--eCC-cccCCceeEEEEeC
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTR--LPP-DFYPDRVPVTIIDT 66 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~-----------~~~~~~--~~~-~~~~~~~~~~i~Dt 66 (670)
|+..+.......+||+|+|++|||||||++.+.+ .+...+.+ +.+... ... .+....+.+.+|||
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence 3344455567789999999999999999976655 44333211 111111 122 44566789999999
Q ss_pred CCCccchhhhHHHhccCCEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh
Q 005908 67 SSSLENKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM 140 (670)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~ii~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~ 140 (670)
||++.+...+..+++.+|++|+|||++ +..+++.+. .|+..++....++|+++|+||+|+.+. + ..+.+
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~ 156 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--L--PVEMV 156 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--C--CHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--c--CHHHH
Confidence 999999999999999999999999999 556777776 377777555578999999999999764 2 23455
Q ss_pred hHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 141 GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 141 ~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
..++..++. .++++|||++|.||+++|+++.+.+..
T Consensus 157 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 157 RAVVDPEGK-FPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHCTTCC-SCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 667776663 279999999999999999999987753
No 127
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-23 Score=206.00 Aligned_cols=167 Identities=23% Similarity=0.319 Sum_probs=137.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|++|||||||+|+|++..+...+.+|++.++....+.+++....+.+||++|++.+..+ +..+++.+|
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 87 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--TSAYYRGAV 87 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGTTTCC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--HHHHhccCC
Confidence 356799999999999999999999999998888888888888788888866678899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|+|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ ...+++.++++..+++ ++++||++| |+
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 163 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENV 163 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999998876532 69999999999997643 3367788888888875 999999999 99
Q ss_pred HHHHHHHHHHHhCCC
Q 005908 578 NNVFSRIIWAAEHPH 592 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~ 592 (670)
+++|++|.+.+....
T Consensus 164 ~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 164 DKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886543
No 128
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=2e-23 Score=199.05 Aligned_cols=163 Identities=22% Similarity=0.259 Sum_probs=131.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999987766443333222 2233444457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ . .+....++...+ .++++|||++|.||+
T Consensus 87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV-T-FLEASRFAQENE--LMFLETSALTGENVE 161 (186)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEecCCCCCCHH
Confidence 99999999999999874 88877654 358999999999999765554 2 234456666665 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 162 ~l~~~l~~~~~ 172 (186)
T 2bme_A 162 EAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=2.7e-23 Score=196.73 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=129.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|++|||||||+++|+++.+.. +.+|++..+ ...+..+|....+.+||++|++. ..+++++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~ 75 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADA 75 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCE
Confidence 356999999999999999999999998876 557776544 46667776667888999999865 346788999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC---CcccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMAVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
+++|||++++.+|..+..|+..+.........++|+++|+||+|+.+ .....++++++++.++..+++++||++| |
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 99999999999999999987766655432112699999999999942 2344777888888875345999999999 9
Q ss_pred hHHHHHHHHHHHh
Q 005908 577 LNNVFSRIIWAAE 589 (670)
Q Consensus 577 v~~l~~~l~~~~~ 589 (670)
++++|+.+.+.+.
T Consensus 156 i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 156 VDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 130
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=2.4e-23 Score=199.31 Aligned_cols=164 Identities=20% Similarity=0.319 Sum_probs=121.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
...++.+||+++|++|||||||+++|+++.+.....++.... .....+....+.+.+|||||++++...+..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345678999999999999999999999988776644433322 2333444556789999999999988889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
+++|||+++..+++.+. .|...+.... .++|+++|+||+|+.. +.+ ..+....+++.++. +++++||++|.|
T Consensus 96 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g 169 (190)
T 3con_A 96 FLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTV--DTKQAHELAKSYGI--PFIETSAKTRQG 169 (190)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-ccC--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence 99999999999999987 4888886643 3799999999999976 222 34556677777763 799999999999
Q ss_pred chHHHHHHHHHHc
Q 005908 164 VPDVFYYAQKAVL 176 (670)
Q Consensus 164 i~~l~~~i~~~~~ 176 (670)
++++|+++.+.+.
T Consensus 170 i~~l~~~l~~~~~ 182 (190)
T 3con_A 170 VEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=201.03 Aligned_cols=164 Identities=19% Similarity=0.289 Sum_probs=134.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ ..+++.+|+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~~ 94 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAHA 94 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCCE
Confidence 45699999999999999999999999988777788887664 34556656678889999999877664 468899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeec-ccC-Ch
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSM-KSK-DL 577 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA-~~g-~v 577 (670)
+++|||++++.+|+.+..|+..+.........+.|+++|+||+|+...+ ...++++++++.+++. ++++|| ++| |+
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccccH
Confidence 9999999999999999999999887642100169999999999997643 3467888999999985 999999 899 99
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|+.|.+.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 132
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=203.90 Aligned_cols=163 Identities=21% Similarity=0.266 Sum_probs=124.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+++|+++.+.....++.+ ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45679999999999999999999999887665333222 222 2333444568999999999998888899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+.+ . .+....+++..+ .++++|||++|.||+
T Consensus 102 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 102 LLVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPEREV-T-FLEASRFAQENE--LMFLETSALTGENVE 176 (200)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 99999999999999874 88877654 358999999999999765554 2 234456666665 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (200)
T 2o52_A 177 EAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 133
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=2.1e-23 Score=197.31 Aligned_cols=162 Identities=20% Similarity=0.363 Sum_probs=140.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+|+|++|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+ ...+++.+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--SHHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence 4599999999999999999999999888877788887777777888866678889999999888887 78889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|+|++++.++..+..|+..+...... +.|+++|+||+|+.+.+. ..++.+.+++..+.+ ++++||++| |+++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGS---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 9999999999999999999888776432 699999999999976433 367778888888875 999999999 9999
Q ss_pred HHHHHHHHHh
Q 005908 580 VFSRIIWAAE 589 (670)
Q Consensus 580 l~~~l~~~~~ 589 (670)
+|+.|.+.+.
T Consensus 167 l~~~l~~~~~ 176 (179)
T 2y8e_A 167 LFRRVAAALP 176 (179)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999988664
No 134
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=5.8e-23 Score=194.83 Aligned_cols=167 Identities=18% Similarity=0.335 Sum_probs=128.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
+..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+.++ +....+.+||++|++.+..+ ...+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--hHHHhhcCC
Confidence 457999999999999999999999998887777888777877888877 44568889999999888887 778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCc--ccHHHHHHHHHHhCCCCcEEeecccC-
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKSK- 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSA~~g- 575 (670)
++++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.... ...++++++++.....+++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999999999999888766431 01168999999999996432 33677888887555556999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
|++++|++|.+.+.
T Consensus 164 gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 164 NVDTAFEEIARSAL 177 (182)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 135
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=199.63 Aligned_cols=165 Identities=23% Similarity=0.398 Sum_probs=140.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....++|+|+|.+|||||||+|+|.+..+...+.+|++..+. ..+..++....+.+||++|++.+..+ ...+++.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~ 87 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGE 87 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHH--HHHHHhhCC
Confidence 356799999999999999999999999887777777776554 45566655668889999999888877 778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 164 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANV 164 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCCH
Confidence 9999999999999999999999998876544 69999999999997643 3467888899888875 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 136
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=7.9e-23 Score=190.43 Aligned_cols=162 Identities=19% Similarity=0.347 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEE
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vl 502 (670)
.+||+++|.+|||||||+|+|.+..+...+.+|++..+ ...+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHhhccCCEEE
Confidence 48999999999999999999999988777767776544 344556655667889999999887777 677889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHHH
Q 005908 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~ 581 (670)
+|+|++++.++..+..|+..+....... +.|+++|+||+|+.+.....+..+++++.++++ ++++||++| |+++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 9999999999999999999888765443 699999999999988666678888999999985 999999999 999999
Q ss_pred HHHHHHHhC
Q 005908 582 SRIIWAAEH 590 (670)
Q Consensus 582 ~~l~~~~~~ 590 (670)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
No 137
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=3.8e-23 Score=198.50 Aligned_cols=164 Identities=21% Similarity=0.339 Sum_probs=127.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCceEEEEEecCChhh-HhhhhchHhhcccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALASC 498 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-~~~~~~~~~~~~~a 498 (670)
...+||+|+|++|||||||+|+|++....... .++++.++....+.++|....+.+||++|.+. +..+ ...+++.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~--~~~~~~~~ 81 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVG 81 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT--GGGHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH--HHhhcccC
Confidence 45699999999999999999999975443222 23455556566677776666778899999866 3334 56678899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-C
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-D 576 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~ 576 (670)
|++++|||++++.||+.+..|...+....... +.|+++|+||+|+...+ ...++.+.++..+++. ++++||++| |
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~~ 158 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHN 158 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC--CCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCCC
Confidence 99999999999999999999988887654322 69999999999997533 3356667777878765 999999999 9
Q ss_pred hHHHHHHHHHHHh
Q 005908 577 LNNVFSRIIWAAE 589 (670)
Q Consensus 577 v~~l~~~l~~~~~ 589 (670)
|+++|+.+.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 138
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=200.97 Aligned_cols=165 Identities=18% Similarity=0.343 Sum_probs=130.7
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
.....+||+|+|.+|||||||+++|++..+...+.+|++..+. ..+...|....+.+||++|++.+..+ +..+++++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 92 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKL--RPLCYTNT 92 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSS--GGGGGTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHH--hHhhcCCC
Confidence 3456799999999999999999999999887777778776553 44556655567889999999888887 67789999
Q ss_pred cEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCC
Q 005908 499 DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI 564 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~ 564 (670)
|++++|||++++.+|..+. .|+..+..... +.|+++|+||+|+.+. ....++...+++.++.
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 9999999999999999987 78888887654 6999999999999752 2346778889999998
Q ss_pred CCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 565 EPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 565 ~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
.+++++||++| |++++|+++.+.+..
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 56999999999 999999999998754
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=9.4e-24 Score=207.03 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=130.0
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc--c-CCceeEEEEeCCCCccchhhhHHHhccC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--Y-PDRVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
......+||+|+|++|||||||+|+|+++.+.....++.+.......+ . ...+.+.+|||||++.+......+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345578999999999999999999999888776544434333322222 1 2238899999999999988999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.+.+ ..+....++...+ .++++|||++|.
T Consensus 86 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKN--YEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCC--CEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 9999999999999999988 5888886643 35999999999999876554 3344455555554 379999999999
Q ss_pred CchHHHHHHHHHHcCCCCCC
Q 005908 163 QVPDVFYYAQKAVLHPTAPL 182 (670)
Q Consensus 163 gi~~l~~~i~~~~~~~~~~~ 182 (670)
||+++|+++.+.+.......
T Consensus 161 gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp TTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHhcccccc
Confidence 99999999999987655433
No 140
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=6.5e-24 Score=206.21 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=98.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCe--EeCCcccCC--ceeEEEEeCCCCccchhhhHHHhccC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPT--RLPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRA 83 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (670)
...+||+|+|++|||||||+++|++. .+.....++.+.. .....+... .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 6766544443311 122334444 78999999999999888888999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCCC-CCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. .+.+ ..+....+++.++ .++++|||
T Consensus 98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTT--CEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcC--CEEEEecc
Confidence 9999999999999999998 5988887754 3899999999999987 5554 3345677777776 37999999
Q ss_pred cc-CCCchHHHHHHHHHHc
Q 005908 159 TT-MIQVPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~-~~gi~~l~~~i~~~~~ 176 (670)
++ |.||+++|+++.+.+.
T Consensus 173 ~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 99 9999999999998765
No 141
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=4.6e-23 Score=196.36 Aligned_cols=164 Identities=21% Similarity=0.352 Sum_probs=138.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|.+|||||||+++|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHhccCCcEE
Confidence 4689999999999999999999998887777777776554 44556656677889999999988887 77789999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCCc
Q 005908 502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP 567 (670)
Q Consensus 502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~ 567 (670)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ....++..++++.++..++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999987 68888877644 5899999999999763 2335677888888887569
Q ss_pred EEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 568 IPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
+++||++| |++++|+.+.+.+..+.
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhccc
Confidence 99999999 99999999999987543
No 142
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=2.9e-23 Score=201.47 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=137.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+|+|.+..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHH--HHhhccCCCE
Confidence 45799999999999999999999999988777778776554 45667766778899999999988887 7788999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (670)
+|+|||++++.+|..+ ..|+..+..... +.|+++|+||+|+.+. ....++++++++.++..+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999998 688888877653 6999999999999742 233677889999988656
Q ss_pred cEEeecc-cC-ChHHHHHHHHHHHh
Q 005908 567 PIPVSMK-SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 567 ~~~vSA~-~g-~v~~l~~~l~~~~~ 589 (670)
++++||+ +| |++++|+.+.+.+.
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHh
Confidence 9999999 68 99999999998765
No 143
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=6.7e-24 Score=201.51 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=123.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|++|||||||+++|.++.+...+.+|++..+.. .+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRL--RPLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTT--GGGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhh--HHhhccCCCE
Confidence 356999999999999999999999988877766777655432 2334445566779999999888887 7788999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-----------cHHHHHHHHHHhCCCCcE
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------AVQDSARVTQELGIEPPI 568 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~ 568 (670)
+++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+... ..++..++++.++..+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999987 68888877643 699999999999976432 456778899999975699
Q ss_pred EeecccC-ChHHHHHHHHHHHhC
Q 005908 569 PVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 569 ~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
++||++| |++++|+.+.+.+..
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 9999999 999999999998764
No 144
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=203.10 Aligned_cols=164 Identities=19% Similarity=0.318 Sum_probs=119.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|+++.+...+.+|+...+. ..+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~ 108 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQDDYDRL--RPLFYPDASV 108 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC-----------------CEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCchhhhHH--HHHHhccCCE
Confidence 45699999999999999999999999887777777765543 44566656668889999999988887 7788999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.... ...+++.++++.++..+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence 99999999999999986 78888877653 69999999999997642 23567788999999856
Q ss_pred cEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
++++||++| |++++|+.|.+.+...
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999988643
No 145
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.5e-23 Score=200.65 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=130.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC-CeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+|+|++|||||||+++|+++.+.....++.+ .+..........+.+.+|||||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35679999999999999999999999887665333333 33333344555778999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+... .+ ..+....++..++ .+++++||++|.||
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWK--CAFMETSAKMNYNV 158 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhC--CeEEEEecCCCCCH
Confidence 9999999999998875 66666543 247899999999999752 22 2344566667766 37999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 005908 165 PDVFYYAQKAVLHPT 179 (670)
Q Consensus 165 ~~l~~~i~~~~~~~~ 179 (670)
+++|+++.+.+....
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 159 KELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876543
No 146
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.90 E-value=4.4e-23 Score=193.65 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=123.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+.+||+++|++|||||||+++|+++.+....|+. +.... .+...+..+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS-SEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC-ccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 4567899999999999999999999998886654443 22222 23334789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQ 163 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~g 163 (670)
+|||++++.+++.... |+..+... ..++|+++|+||+|+.+.... .+....+.... . ...++++|||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 9999999999998885 55544332 258999999999999765322 11111111111 0 012699999999999
Q ss_pred chHHHHHHHHHHcC
Q 005908 164 VPDVFYYAQKAVLH 177 (670)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (670)
|+++|+++.+.+..
T Consensus 156 i~~l~~~l~~~i~~ 169 (171)
T 1upt_A 156 LDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 147
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=7.8e-23 Score=197.85 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=138.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+++|.+..+...+.+|++..+.. .+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 98 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTD 98 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHH--HHHhcCCCC
Confidence 3457999999999999999999999999888777888776653 3566755678889999999988887 777899999
Q ss_pred EEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCC
Q 005908 500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIE 565 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~ 565 (670)
++++|||++++.++..+ ..|...+..... +.|+++|+||+|+.+.. ...++..++++.++..
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 99999999999999988 678888777543 69999999999998642 3356778888898885
Q ss_pred CcEEeecccC-ChHHHHHHHHHHHh
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
+++++||++| |++++|+.|.+.+.
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 6999999999 99999999998765
No 148
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=8.6e-23 Score=195.49 Aligned_cols=163 Identities=20% Similarity=0.347 Sum_probs=130.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|.+|||||||+|+|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~ 96 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF 96 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-------------CTTCSEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHhhCcCCEE
Confidence 4699999999999999999999999887777677765443 45556655667889999999888877 77889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l 580 (670)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.......++++++++.++++ ++++||++| |++++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSD--DVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 99999999999999999998888765433 699999999999987556678889999999985 999999999 99999
Q ss_pred HHHHHHHHhC
Q 005908 581 FSRIIWAAEH 590 (670)
Q Consensus 581 ~~~l~~~~~~ 590 (670)
+++|.+.+..
T Consensus 174 ~~~l~~~~~~ 183 (190)
T 3con_A 174 FYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 149
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=3.4e-23 Score=201.08 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=128.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45789999999999999999999999987766444433322 3334455668999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. +.+ ..+....+...... .+++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 9999999999999887 4877775532 4789999999999973 333 23344555553333 37999999999
Q ss_pred CCchHHHHHHHHHHc
Q 005908 162 IQVPDVFYYAQKAVL 176 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (670)
.||+++|+++.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 160 INVEQAFQTIARNAL 174 (207)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 150
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=4.3e-23 Score=192.39 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEEC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 92 (670)
+||+++|++|||||||+++|+++.+....|+.. ... ..+...++.+.+|||||++.+...+..+++++|++++|||+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-CCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCc-eeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999988776555433 221 13445678999999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCCchHHH
Q 005908 93 NQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF 168 (670)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~gi~~l~ 168 (670)
+++.+++.+.. |+..+.. ..+++|+++|+||+|+.+... ..+....+.... . ...++++|||++|.||+++|
T Consensus 78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999998875 6665543 235899999999999976422 111111111111 0 11269999999999999999
Q ss_pred HHHHHHHc
Q 005908 169 YYAQKAVL 176 (670)
Q Consensus 169 ~~i~~~~~ 176 (670)
+++.+.+.
T Consensus 154 ~~l~~~i~ 161 (164)
T 1r8s_A 154 DWLSNQLR 161 (164)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99988754
No 151
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=6.8e-23 Score=199.91 Aligned_cols=163 Identities=16% Similarity=0.294 Sum_probs=127.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
...+.+||+|+|++|||||||+++|++..+.... +++..... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999998876553 33332222 223344445889999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+. .+.+ ..+....++..++ .++++|||++|.||
T Consensus 96 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-TRVV--TADQGEALAKELG--IPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCS-SCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCc-cccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence 99999999999999887 4888887654 479999999999993 3333 3344566777776 37999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 170 ~~l~~~l~~~~~ 181 (213)
T 3cph_A 170 NEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 152
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=2.6e-23 Score=203.71 Aligned_cols=166 Identities=12% Similarity=0.214 Sum_probs=138.4
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC----------ceEEEEEecCChhhHhhh
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKI 488 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~----------~~~~~i~d~~g~~~~~~~ 488 (670)
..++.+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..++. ...+.+||++|++.+..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3466799999999999999999999998886665567666666666666644 567889999999998887
Q ss_pred hchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCc
Q 005908 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPP 567 (670)
Q Consensus 489 ~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 567 (670)
+..+++.+|++|+|||++++.+++.+..|+..+....... ++|+++|+||+|+.+.+ ...++++++++.++++ +
T Consensus 101 --~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~ 175 (217)
T 2f7s_A 101 --TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-Y 175 (217)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-E
T ss_pred --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCCEEEEEECCccccccccCHHHHHHHHHHCCCc-E
Confidence 7889999999999999999999999999988776543222 69999999999997643 3367888899998876 9
Q ss_pred EEeecccC-ChHHHHHHHHHHHh
Q 005908 568 IPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
+++||++| |++++|++|.+.+.
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999 99999999998774
No 153
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=5.8e-23 Score=197.19 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=120.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCe-EeCCcccCCceeEEEEeCCCCcc-chhhhHHHhccCCE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA 85 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 85 (670)
.+.+||+|+|++|||||||+|+|++.. +....+++...+ .....+++..+.+.+|||+|... +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456999999999999999999999643 444444433332 23344555667889999999876 44566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
+++|||++++.+|+.+.. |...+... .+++|+++|+||+|+...+.+ .. +....++..++ .++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~-~~~~~~a~~~~--~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREV-SV-SEGRAXAVVFD--XKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccc-cH-HHHHHHHHHhC--CceEEeccccCCC
Confidence 999999999999999875 77777653 347999999999999765554 33 33345555555 3799999999999
Q ss_pred chHHHHHHHHHHc
Q 005908 164 VPDVFYYAQKAVL 176 (670)
Q Consensus 164 i~~l~~~i~~~~~ 176 (670)
|+++|+.+.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 154
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=3.1e-23 Score=200.13 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=113.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+.+||+++|++|||||||+++|.++.+....|+ .+.... .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPTSE--ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCSCE--EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC-CCceeE--EEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35678999999999999999999999887543333 222222 233345899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc---------------cCC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIE 151 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~ 151 (670)
|||++++.+++.+.. |+..+.+. ..++|+++|+||+|+... + .. +.+........ ...
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I-SE-ERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C-CH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C-CH-HHHHHHhCcccccccccccccccccCceE
Confidence 999999999999885 66666442 358999999999999752 2 22 33333333211 123
Q ss_pred eEEEeCcccCCCchHHHHHHHHH
Q 005908 152 TCVECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~ 174 (670)
++++|||++|.||+++|+++.+.
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 79999999999999999998754
No 155
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=6.9e-23 Score=195.20 Aligned_cols=164 Identities=23% Similarity=0.400 Sum_probs=139.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 92 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEG 92 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHH--HHHHhccCCE
Confidence 35699999999999999999999999887777777776554 44556655568889999999888877 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|||++++.+++.+..|+..+....... ++|+++|+||+|+.+.+ ...+++.++++.++++ ++++||++| |++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHH
Confidence 999999999999999999999988876544 69999999999997643 3467788889888875 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 005908 579 NVFSRIIWAAEH 590 (670)
Q Consensus 579 ~l~~~l~~~~~~ 590 (670)
++|++|.+.+..
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 156
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=4.3e-23 Score=200.17 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=135.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|.+|||||||+++|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence 4569999999999999999999999888777777776544 455667767778889999999998887 7789999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.... ...++...+++.++..+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 99999999999999987 78888887653 69999999999997643 33567788899999878
Q ss_pred cEEeecccC-ChHHHHHHHHHHH
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~ 588 (670)
++++||++| |++++|+++.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 999999999 9999999998754
No 157
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=9.4e-23 Score=194.76 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=119.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||+++|+++.+....|+. +.... .+..+++.+.+|||||++++...+..+++.+|++|+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCC-ccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 56899999999999999999999988876333332 22221 2223568999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~~~gi~ 165 (670)
||++++++++.+.. |+..+... ..++|+++|+||+|+.+... .++..+.+... +. ...++++|||++|.||+
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999885 66666543 35899999999999975322 12221222111 11 11279999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 005908 166 DVFYYAQKAVLHPTA 180 (670)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (670)
++|+++.+.+..+..
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998865543
No 158
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=4e-23 Score=197.63 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=123.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.++.+||+|+|++|||||||+++|+++.+.....++.+.... .+...++.+.+|||||++++...+..+++.+|++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 456799999999999999999999999887654443333332 244568899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCc
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV 164 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi 164 (670)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... .+....+.... ....++++|||++|.||
T Consensus 97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 999999999999885 55555432 258999999999999764221 11111111111 01126899999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 159
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=6.1e-23 Score=196.71 Aligned_cols=158 Identities=13% Similarity=0.212 Sum_probs=118.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+.+||+++|++|||||||+++|.++.+....++ .+.... .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-WHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCC-CSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccC-CCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35678999999999999999999999887654333 333332 233345899999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----------cCCeEEEe
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVEC 156 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 156 (670)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+... + .. +.+........ ...++++|
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V-SE-AELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C-CH-HHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C-CH-HHHHHHhCCccccccccccccceEEEEEe
Confidence 999999999999885 66666432 358999999999999762 2 22 22222222110 11369999
Q ss_pred CcccCCCchHHHHHHHHH
Q 005908 157 SATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~ 174 (670)
||++|.||+++|+++.+.
T Consensus 172 Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp BTTTTBSHHHHHHHHHTT
T ss_pred ECCcCCCHHHHHHHHHhh
Confidence 999999999999988753
No 160
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=1.8e-23 Score=198.74 Aligned_cols=165 Identities=12% Similarity=0.120 Sum_probs=116.6
Q ss_pred CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc
Q 005908 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82 (670)
Q Consensus 3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 82 (670)
........+.+||+++|++|||||||+++|+++.+....++ .+.... .+..+++.+.+|||||++++...+..+++.
T Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 12 SGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp ---------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-SSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTT
T ss_pred CCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-CceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 34445566789999999999999999999999887332333 222222 222356899999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-hc-cCCeEEEeCc
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSA 158 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA 158 (670)
+|++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... .+..+.+... .. ...++++|||
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBT
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhCcccccCCceEEEEccC
Confidence 999999999999999999885 55555432 358999999999999764221 1111111111 01 1126999999
Q ss_pred ccCCCchHHHHHHHHH
Q 005908 159 TTMIQVPDVFYYAQKA 174 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (670)
++|.||+++|+++.+.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999988753
No 161
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=5.1e-23 Score=201.74 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=138.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-eEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
...+||+|+|.+|||||||+|+|+++.+...+.+|.+.......+...++. ..+.+||++|++.+..+ ...+++.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--KDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--CHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--HHHHhhcCC
Confidence 457999999999999999999999988876666776655554444444333 77889999999888877 778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.+. ....+....+++..++. ++++||++| |+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 162 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHNF 162 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCCH
Confidence 999999999999999999999998877543 5899999999999875 33466677777777765 999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 005908 578 NNVFSRIIWAAEHPHLNI 595 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~~~~ 595 (670)
+++|++|.+.+.......
T Consensus 163 ~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 163 GLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp THHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999997765554
No 162
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=197.97 Aligned_cols=166 Identities=21% Similarity=0.326 Sum_probs=133.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+|+|.++.+...+.+|++..+... +..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 99 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDV 99 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTT--GGGGCTTCCE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHH--HHhhcCCCCE
Confidence 3468999999999999999999999998877777777666543 566655678889999999888877 7788999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+.. ...++...+++.++..+
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD 175 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence 9999999999999988 678888877543 69999999999997641 23567778888888856
Q ss_pred cEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
++++||++| |++++|++|.+.+..+..
T Consensus 176 ~~~~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 176 YLECSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999876543
No 163
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=2e-23 Score=204.45 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=129.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCC----------ceeEEEEeCCCCccchhhh
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPD----------RVPVTIIDTSSSLENKGKL 76 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~ 76 (670)
..+.+||+|+|++|||||||+++|++..+.....++.+... ....+... .+.+.||||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 45679999999999999999999999887554322222111 22333333 6889999999999988889
Q ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV 154 (670)
Q Consensus 77 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (670)
..+++.+|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .+++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCC--CcEE
Confidence 99999999999999999999999887 4887776543 58999999999999765554 3345667777776 3799
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 005908 155 ECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+|||++|.||+++|+++.+.+.
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 164
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=196.32 Aligned_cols=169 Identities=17% Similarity=0.323 Sum_probs=139.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...++|+|+|.+|||||||+|+|+++.+...+.+|.+..+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAM--QRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHH--HHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHH--HHHhhccCCE
Confidence 45699999999999999999999998887766677665443 44555655668889999999888877 7788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
+++|||++++.+++.+..|+..+....... .+.|+++|+||+|+.+.....+....+++.+++. ++++||++| |+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Confidence 999999999999998888887776653210 1589999999999987666677888889988875 999999999 9999
Q ss_pred HHHHHHHHHhCCCCC
Q 005908 580 VFSRIIWAAEHPHLN 594 (670)
Q Consensus 580 l~~~l~~~~~~~~~~ 594 (670)
+|++|.+.+..+..+
T Consensus 161 l~~~l~~~~~~~~~~ 175 (199)
T 2gf0_A 161 LFQELLTLETRRNMS 175 (199)
T ss_dssp HHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999988765543
No 165
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.89 E-value=4.4e-23 Score=200.31 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=106.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcCCC--ceEEEEEecCChhhHhhhhchHhhcc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA 496 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~~g~--~~~~~i~d~~g~~~~~~~~~~~~~~~ 496 (670)
...+||+|+|.+|||||||+|+|++. .+...+.+|++.++....+.+++. ...+.+||++|++.+..+ +..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--ISQYWN 95 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--HSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--HHHHHh
Confidence 45699999999999999999999998 666666678776677777888865 678899999999988887 788899
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-C-cccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-Y-TMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.+|++|+|||++++.+|+.+..|+..+.........+.|+++|+||+|+.+ . ....++++++++.++++ ++++||++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 174 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP 174 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence 999999999999999999999999999887541011699999999999986 3 33467888999999875 99999999
Q ss_pred -C-ChHHHHHHHHHHHh
Q 005908 575 -K-DLNNVFSRIIWAAE 589 (670)
Q Consensus 575 -g-~v~~l~~~l~~~~~ 589 (670)
| |++++|++|.+.+.
T Consensus 175 ~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFY 191 (208)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 9 99999999999775
No 166
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=7.1e-23 Score=196.16 Aligned_cols=163 Identities=14% Similarity=0.205 Sum_probs=120.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCE
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (670)
....+.+||+|+|++|||||||+++|++.. +.....++.+.... .+..+++.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 345678999999999999999999999887 45444444443322 233446899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-C---CCCCEEEEEeCCCCCCCCCccchhhhhhHHH--HHhc-cCCeEEEeCc
Q 005908 86 VVLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSA 158 (670)
Q Consensus 86 ii~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~SA 158 (670)
+|+|||++++.+++.+.. |+..+... . .++|+++|+||+|+.+... . +.+.... ..+. ...++++|||
T Consensus 94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---S-VKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---H-HHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCC---H-HHHHHHhChhhccCCceEEEEccC
Confidence 999999999999999885 55555443 2 4899999999999975422 2 2222222 1211 1137999999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 005908 159 TTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~ 176 (670)
++|.||+++|+++.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTBTHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999988653
No 167
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=9.7e-23 Score=194.40 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||+++|+++. .....++.+..... +..+++.+.+|||||++++...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 578999999999999999999999888 33333333333222 223578999999999999888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH-h-ccCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~~~gi~ 165 (670)
||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... ++..+.+... . ....++++|||++|.||+
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999885 55555432 358999999999999765322 1111111111 0 111379999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+++.+.+..
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 168
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=4.5e-23 Score=195.98 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=118.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
.+.+||+++|++|||||||+++|.+..+....| +.+..... +..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~-t~g~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETTEEEEE--EEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccC-cCCeEEEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 567999999999999999999999886533222 22322222 223478999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--ccCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~~gi~ 165 (670)
||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... ++....+.... ....++++|||++|.||+
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999875 65555322 258999999999999765322 11111111110 011269999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (181)
T 1fzq_A 167 DGMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 169
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=9e-23 Score=191.48 Aligned_cols=166 Identities=19% Similarity=0.332 Sum_probs=134.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..+||+++|.+|||||||+|+|+++.+...+.+|.+..+. ..+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 78 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF 78 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHhcccCCEE
Confidence 3589999999999999999999998887666666665443 34455545567889999999888777 77888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
++|+|++++.+++.+..|+..+....... .+.|+++|+||+|+.+.+. ...+.+.+++..+++ ++++||++| |+++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKE 156 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHHH
Confidence 99999999999998888888887654211 1689999999999976433 356778888888875 999999999 9999
Q ss_pred HHHHHHHHHhCCC
Q 005908 580 VFSRIIWAAEHPH 592 (670)
Q Consensus 580 l~~~l~~~~~~~~ 592 (670)
+|++|.+.+..++
T Consensus 157 l~~~l~~~~~~~~ 169 (172)
T 2erx_A 157 LFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999998776543
No 170
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=6.8e-23 Score=201.37 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=140.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+|+|+.+.+...+.+|.+.++....+...+....+.+||++|++.+..+ ...+++.+|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~ 89 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQ 89 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--CHHHHTTCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--HHHHHhcCC
Confidence 456799999999999999999998877766666677776677777777766778899999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
++++|||++++.++..+..|+..+..... ++|+++|+||+|+.+.... .....+++..++. ++++||++| |++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST----TCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCE-EEECBGGGTBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCcccccccc-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999999988754 6999999999999875443 3566678888876 999999999 999
Q ss_pred HHHHHHHHHHhCC
Q 005908 579 NVFSRIIWAAEHP 591 (670)
Q Consensus 579 ~l~~~l~~~~~~~ 591 (670)
++|++|.+.+...
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987544
No 171
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.89 E-value=6.3e-23 Score=197.00 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=116.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.++.+||+|+|++|||||||+++|+++.+....|+.. ... ..+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FNV--ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT-EEE--EEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc-eeE--EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4578999999999999999999999888765434322 211 2334467899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--cCCeEEEeCcccCCCc
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECSATTMIQV 164 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~~~gi 164 (670)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... .+....+..... ...++++|||++|.||
T Consensus 103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 999999999999875 66655432 248999999999999764221 111111111110 1126899999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 172
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.8e-24 Score=208.96 Aligned_cols=165 Identities=25% Similarity=0.403 Sum_probs=132.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|.+|||||||+|+|++..+...+.++++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 107 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH 107 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--SCC--CCCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhhcCC
Confidence 456799999999999999999999998887776677777788888888866678899999999888877 778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+.. .+..+.+++.++++ ++++||++| |+
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~gv 183 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV 183 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---HHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999998766543 5999999999999865433 45677888888876 999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 005908 578 NNVFSRIIWAAEH 590 (670)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (670)
+++|++|.+.+..
T Consensus 184 ~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 184 EQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 173
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.88 E-value=8.2e-23 Score=196.84 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=115.1
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCccc-CCceeEEEEeCCCCccchhhh---HHH
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFY-PDRVPVTIIDTSSSLENKGKL---NEE 79 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~---~~~ 79 (670)
......+.+||+++|++|||||||++++.+........+...... ....+. ...+.+.+|||+|++.+.... ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 344566789999999999999999998887532221111111111 111122 556899999999999987776 899
Q ss_pred hccCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-----cchhhhhhHHHH----Hhc
Q 005908 80 LKRADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFR 148 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~----~~~ 148 (670)
++++|++|+|||++++ +++..+. .|+..+....+++|++||+||+|+.+.... ....+....+++ ..+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 6666665 366666555679999999999998753110 012223344555 333
Q ss_pred cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 149 EIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 149 ~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
.++++|||++ .||+++|+.+++.+
T Consensus 172 --~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 --LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp --EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred --cceEEEEech-hhHHHHHHHHHHHh
Confidence 3799999999 99999999998865
No 174
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=3e-22 Score=195.69 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=117.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccchh-hhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~i 86 (670)
..+.+||+++|++|||||||+++|+++.+....+++..... ...+... ++.+.+|||||++.+.. .+..+++.+|++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999998877665443332 2334333 68899999999998887 788899999999
Q ss_pred EEEEECCChh-hHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc--------------
Q 005908 87 VLTYACNQQS-TLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-------------- 148 (670)
Q Consensus 87 i~v~d~~~~~-s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------------- 148 (670)
|+|||+++.. ++....+.|...+.. ...++|+++|+||+|+...... ......+...++
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999854 466666667766654 2347999999999999865432 111111111111
Q ss_pred ----------------------cCCeEEEeCcccC------CCchHHHHHHHHH
Q 005908 149 ----------------------EIETCVECSATTM------IQVPDVFYYAQKA 174 (670)
Q Consensus 149 ----------------------~~~~~~~~SA~~~------~gi~~l~~~i~~~ 174 (670)
...+|++|||++| .||+++|+++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0236999999999 9999999999875
No 175
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=4.4e-22 Score=190.35 Aligned_cols=160 Identities=17% Similarity=0.267 Sum_probs=126.2
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
..+..+||+|+|.+|||||||+|+|+++.+...+.+|++..+. .+.. ....+.+||++|++.+..+ +..+++.+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 91 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSM--WERYCRGV 91 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHH--HHHHHccC
Confidence 3456799999999999999999999999887666677765543 2332 4678889999999998887 78889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEee
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVS 571 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vS 571 (670)
|++++|+|++++.++..+..|+..+....... +.|+++|+||+|+...... +++.+.++. .+++++|
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDE----KELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCCEEEEEECCCCccCCCH----HHHHHHhChhhhccCCeeEEEEE
Confidence 99999999999999999999988886643222 6999999999999864221 223333221 1489999
Q ss_pred cccC-ChHHHHHHHHHHHhC
Q 005908 572 MKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~ 590 (670)
|++| |++++|++|.+.+..
T Consensus 166 A~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 9999 999999999987654
No 176
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3e-22 Score=192.83 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=136.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|+++.+...+.+|++..+. ..+...+....+.+||++|++. ..+ ...+++.+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~--~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQ--REGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccc--hhhhhccCCE
Confidence 45699999999999999999999999988887788776553 4455665667888999999876 445 6788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-cccHHHHHHHHHHhCCCCcEEeecccC--Ch
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK--DL 577 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g--~v 577 (670)
+++|||++++.+++.+..|+..+....... ++|+++|+||+|+.+. ....+++.++++.++++ ++++||++| |+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~gi 178 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNI 178 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCcCH
Confidence 999999999999999999998888765433 6999999999999764 33467888899888875 999999998 79
Q ss_pred HHHHHHHHHHHh
Q 005908 578 NNVFSRIIWAAE 589 (670)
Q Consensus 578 ~~l~~~l~~~~~ 589 (670)
+++|++|.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (196)
T 2atv_A 179 TEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 177
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.8e-24 Score=209.87 Aligned_cols=166 Identities=23% Similarity=0.331 Sum_probs=130.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC-CCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
..+.+||+++|++|||||||+++|+++.+.....++. ........+....+.+.+|||||++++...+..+++.+|++|
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3567999999999999999999999888766633332 222233445556778889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc----------cchhhhhhHHHHHhccCCeEEEeC
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
+|||++++.+++.+...|+..++...+++|+++|+||+|+...... ....+....+++.++. .++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS 185 (204)
Confidence 9999999999999875698888877678999999999999764311 0122334455555542 2689999
Q ss_pred cccCCCchHHHHHHHHHH
Q 005908 158 ATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~ 175 (670)
|++|.||+++|+.+.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999988754
No 178
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.4e-22 Score=190.87 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=121.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|.+|||||||+|+|+++.+. .+.+|.+... ..+... ...+.+||++|++++..+ +..+++.+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 86 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTEF 86 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 45699999999999999999999988876 4446665332 334444 377889999999888887 7888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH-----hCCCCcEEeecccC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKSK 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSA~~g 575 (670)
+++|+|++++.+|+....|+..+....... +.|+++|+||+|+.+.. ..+++.+.... .++ +++++||++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 162 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-HIQACCALTG 162 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhhC--CCeEEEEEECCCCcCCC-CHHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence 999999999999999999998887653222 69999999999997632 23333332221 222 5899999999
Q ss_pred -ChHHHHHHHHHHHhCCCCC
Q 005908 576 -DLNNVFSRIIWAAEHPHLN 594 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~~~ 594 (670)
|++++|++|.+.+..+...
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp BTHHHHHHHHHHHHCC----
T ss_pred cCHHHHHHHHHHHHHHHhhh
Confidence 9999999999998655443
No 179
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=9.9e-22 Score=184.34 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=124.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..+||+|+|++|||||||+|+|.++.+.. +.+|.+ .....+... ...+.+||++|++.+..+ +..+++.+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 76 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPY--WRCYYSNTD 76 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGG--GGGGCTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHH--HHHHhccCC
Confidence 3457999999999999999999999988753 345554 334445444 467889999999888887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK 575 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g 575 (670)
++++|+|++++.+|.....|+..+....... +.|+++|+||+|+.+.....+..+.+. +..++ +++++||++|
T Consensus 77 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (171)
T 1upt_A 77 AVIYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKG 153 (171)
T ss_dssp EEEEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhchhhC--CCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCC
Confidence 9999999999999999998888876543222 699999999999987432222222221 11233 5899999999
Q ss_pred -ChHHHHHHHHHHHhC
Q 005908 576 -DLNNVFSRIIWAAEH 590 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~ 590 (670)
|++++|+++.+.+..
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 999999999998864
No 180
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=4.9e-22 Score=191.54 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=125.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (670)
..+.+||+|+|.+|||||||+|+|++..+.. .+.+|++ +....++ +....+.+||++|++.+..+ +..+++.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFE--KGRVAFTVFDMGGAKKFRGL--WETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEE--eCCEEEEEEECCCCHhHHHH--HHHHHhcC
Confidence 4567999999999999999999999999888 5667766 3334444 35678889999999998887 78899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCC-----CCCCCcEEEEEeCCCCCCCcccHHHHHHHH-----HHhCCCCcE
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGED-----SGYGVPCLLIASKDDLKPYTMAVQDSARVT-----QELGIEPPI 568 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~-----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 568 (670)
|++|+|||++++.+|..+..|+..+...... ...++|+++|+||+|+.......+..+.+. +..++ +++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF-VIF 166 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE-EEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee-EEE
Confidence 9999999999999999999998888654210 001589999999999987533222222221 22344 589
Q ss_pred EeecccC-ChHHHHHHHHHHHhCC
Q 005908 569 PVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 569 ~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
++||++| |++++|++|.+.+...
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHHH
Confidence 9999999 9999999999988643
No 181
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=5.1e-24 Score=205.83 Aligned_cols=163 Identities=18% Similarity=0.279 Sum_probs=122.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (670)
..+.+||+|+|++|||||||+|+|++..+... .+++..... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35579999999999999999999999887665 232222222 3334445568899999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCch
Q 005908 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ ..+....++..++ .+++++||++|.||+
T Consensus 110 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVE 184 (199)
T ss_dssp EECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTT--CCBCCCCC---HHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcC--CeEEEEECCCCCCHH
Confidence 99999999999999984 888887654 47999999999999876655 2344567777776 379999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++|+++.+.+.
T Consensus 185 ~l~~~l~~~l~ 195 (199)
T 3l0i_B 185 QSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 182
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=1.3e-21 Score=186.48 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=124.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+++|++|||||||+|+|+++. ...+.+|++ .....+..+ ...+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHR--GFKLNIWDVGGQKSLRSY--WRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEET--TEEEEEEEECCSHHHHTT--GGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 456999999999999999999999988 444556665 334445544 467889999999998887 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-----HhCCCCcEEeecccC
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKSK 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSA~~g 575 (670)
+++|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+.... ++..+... ..++ +++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSC-NAIQEALELDSIRSHHW-RIQGCSAVTG 164 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcC--CCcEEEEEeCccCCCCCCH-HHHHHHhChhhccCCce-EEEEeeCCCC
Confidence 999999999999999999988887653222 6999999999999874322 22222111 1122 5899999999
Q ss_pred -ChHHHHHHHHHHHhCC
Q 005908 576 -DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~ 591 (670)
|++++|+++.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 183
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=1.9e-22 Score=193.00 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=121.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||+++|+++.+....|+.. .... .+...++.+.+|||||++++...+..+++.+|++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT-CCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc-eEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 578999999999999999999999888765444432 2222 2333478999999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-c-cCCeEEEeCcccCCCch
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP 165 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~~~gi~ 165 (670)
||++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... .+....+.... . ...++++|||++|.||+
T Consensus 97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999998885 55554332 258999999999999764321 11111111111 0 01269999999999999
Q ss_pred HHHHHHHHHHcC
Q 005908 166 DVFYYAQKAVLH 177 (670)
Q Consensus 166 ~l~~~i~~~~~~ 177 (670)
++|+++.+.+..
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 184
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.87 E-value=4.1e-22 Score=208.43 Aligned_cols=166 Identities=25% Similarity=0.334 Sum_probs=135.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE-eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
...+||+++|++|||||||+++|+++.+.....++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4568999999999999999999999888766544433322 333445556778899999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC------------CCccchhhhhhHHHHHhccCCeEEEe
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (670)
|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....+++.++. .++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~ 309 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC 309 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccc--cHHHHHHHHHHcCC-cEEEEe
Confidence 999999999999876799999887779999999999998653 222 23445667777653 379999
Q ss_pred CcccCCCchHHHHHHHHHHcCC
Q 005908 157 SATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
||++|.||+++|+.+.+.++.+
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988754
No 185
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=187.91 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=125.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
...+||+|+|.+|||||||+|+|++.. +...+.+|++ +....+..++ ..+.+||++|++.+..+ +..+++.+|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d 92 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNL--WEHYYKEGQ 92 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGG--GGGGGGGCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCC
Confidence 456999999999999999999999987 4444445554 5556666663 67889999999888887 778999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH--H---hCCCCcEEeeccc
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E---LGIEPPIPVSMKS 574 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~---~~~~~~~~vSA~~ 574 (670)
++++|+|++++.++..+..|+..+.........+.|+++|+||+|+.+.. ..+++.+... . .++ +++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-TSVKVSQLLCLENIKDKPW-HICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-EEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-CHHHHHHHhChhhccCCce-EEEEccCCC
Confidence 99999999999999999999988877543200169999999999997632 3344444442 1 122 589999999
Q ss_pred C-ChHHHHHHHHHHHhC
Q 005908 575 K-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~ 590 (670)
| |++++|++|.+.+..
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 9 999999999988754
No 186
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=7.2e-22 Score=190.56 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=117.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+++|++|||||||+++|.++.+.. +.+|.+... ..+..+| ..+.+||++|++.+..+ +..+++.+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 95 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRV--WKNYLPAING 95 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCG--GGGGGGGCSE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHH--HHHHHhcCCE
Confidence 456899999999999999999999988753 345655443 3455553 78889999999988887 7789999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC----------------C
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG----------------I 564 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~ 564 (670)
+++|+|++++.+|.....|+..+.+..... ++|+++|+||+|+.+ ....+++.+++.... .
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCce
Confidence 999999999999999999998887653222 699999999999976 334555555544221 1
Q ss_pred CCcEEeecccC-ChHHHHHHHHHH
Q 005908 565 EPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 565 ~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
.+++++||++| |++++|++|.+.
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh
Confidence 25899999999 999999999764
No 187
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=1.1e-21 Score=182.76 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEE
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vll 503 (670)
+||+++|++|||||||+|+|+++.+.. +.||.+ +....+.. ....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHH--HHHHhccCCEEEE
Confidence 589999999999999999999888764 345655 33344544 3467889999999988887 7788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecccC-
Q 005908 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK- 575 (670)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~~g- 575 (670)
|+|++++.+|.....|+..+....... +.|+++|+||+|+.+... .+++.+..+. .+++++||++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhc--CCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999999999988876543222 699999999999976422 2223333321 14899999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
|++++|++|.+.+.
T Consensus 148 gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 148 GLYEGLDWLSNQLR 161 (164)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 188
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=1.7e-22 Score=194.45 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=124.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------CCcccceEEEEE-EcCCCceEEEEEecCChhhHhhh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----------PTTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI 488 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----------~t~~~~~~~~~v-d~~g~~~~~~i~d~~g~~~~~~~ 488 (670)
...+||+|+|.+|||||||++.+.+.. ...+. +|.+.++....+ ...+....+.+||++|++.+..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 457999999999999999997776643 33322 222222222222 44455668889999999888887
Q ss_pred hchHhhcccccEEEEEEECC------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh
Q 005908 489 LSNKEALASCDVTIFVYDSS------DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562 (670)
Q Consensus 489 ~~~~~~~~~ad~vllv~D~s------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 562 (670)
+..+++.+|++|+|||++ +..+|..+..|+..+.... .+.|+++|+||+|+.+. ...++++++++.+
T Consensus 91 --~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~----~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 91 --RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL----DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPE 163 (198)
T ss_dssp --HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT----TSSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred --HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc----CCCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence 788999999999999999 4566777777777663221 27999999999999773 5577888899888
Q ss_pred CCCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 563 GIEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 563 ~~~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
++.+++++||++| |++++|++|.+.+..
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 8845999999999 999999999998753
No 189
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=1e-21 Score=188.21 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=121.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+++|++|||||||+++|.++.+.. +.+|.+.. ...+..+| ..+.+||++|++.+..+ +..+++.+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 93 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRL--WKDYFPEVNG 93 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTS--GGGGCTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCCE
Confidence 345799999999999999999999988754 34555543 34555553 78889999999988887 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh-----------CCCCcEE
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-----------GIEPPIP 569 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~ 569 (670)
+++|+|++++.+|+....|+..+....... +.|+++|+||+|+.+ ....+++.+..... ...++++
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhc--CCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999999999999998887643322 699999999999986 33344444433221 1125899
Q ss_pred eecccC-ChHHHHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~ 587 (670)
+||++| |++++|++|.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 999999 999999998753
No 190
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=5.4e-22 Score=185.51 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=111.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHhc--
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK-- 81 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~-- 81 (670)
+.++|+++|++|||||||+++|++..+... .|++.... ....+...+..+.+|||||++.+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCC-CEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceee-eEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 468999999999999999999998775333 44322111 111223346789999999998764 33355664
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
++|++++|+|+++.+.. . .|+..+.+. ++|+++|+||+|+...+.+ . ...+.+++.++ .+++++||++|
T Consensus 81 ~~~~~i~v~D~~~~~~~---~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~SA~~~ 149 (165)
T 2wji_A 81 KPDLVVNIVDATALERN---L-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAAKK 149 (165)
T ss_dssp CCSEEEEEEETTCHHHH---H-HHHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGGGT
T ss_pred CCCEEEEEecCCchhHh---H-HHHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhC--CCEEEEEcCCC
Confidence 89999999999875433 2 377777664 7999999999998654443 2 23466777776 37999999999
Q ss_pred CCchHHHHHHHHHH
Q 005908 162 IQVPDVFYYAQKAV 175 (670)
Q Consensus 162 ~gi~~l~~~i~~~~ 175 (670)
.||+++|+.+.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 150 MGIEELKKAISIAV 163 (165)
T ss_dssp BSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 191
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=2.1e-22 Score=191.32 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=116.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 89 (670)
++.+||+++|++|||||||+++|+++.+....++ .+..... +..++..+.+|||||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVET--LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCCEEE--EEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc-CccceEE--EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 6789999999999999999999998877332333 2222222 223468999999999999888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--c-cCCeEEEeCcccCCCc
Q 005908 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--R-EIETCVECSATTMIQV 164 (670)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~SA~~~~gi 164 (670)
+|++++.+++.+.. |+..+... ..++|+++|+||+|+.+.... .+ +....... . ...++++|||++|.||
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA---SE-VSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HH-HHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HH-HHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999885 66666443 358999999999999764221 11 11111110 0 1126999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+++.+.+.
T Consensus 168 ~~l~~~l~~~~~ 179 (183)
T 1moz_A 168 TEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 192
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=1.2e-22 Score=193.58 Aligned_cols=164 Identities=13% Similarity=0.199 Sum_probs=115.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCCCCCeE--eCCcc---cCCceeEEEEeCCCCccchhhhHHHhccCC
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (670)
.+||+|+|++|||||||+++|++. .+.....++.+... ..... ....+.+.+|||+|++++....+.+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 35444333333222 11111 235678999999999998888899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc--hhhhhhHHHHHhccC--CeEEEeCcc
Q 005908 85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFREI--ETCVECSAT 159 (670)
Q Consensus 85 ~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~SA~ 159 (670)
++++|||++++ .+++.+. .|+..+....+++|+++|+||+|+.+.+.+ . ..+....+++.++.. .+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 5788887 598888776668999999999999754322 1 012223333333310 138999999
Q ss_pred cCC-CchHHHHHHHHHHcC
Q 005908 160 TMI-QVPDVFYYAQKAVLH 177 (670)
Q Consensus 160 ~~~-gi~~l~~~i~~~~~~ 177 (670)
+|. |++++++.+.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887764
No 193
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=1e-21 Score=186.52 Aligned_cols=157 Identities=23% Similarity=0.313 Sum_probs=121.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+++|++|||||||+++|.+..+.. +.+|.+ +....+..+ ...+.+||++|++.+..+ +..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 567999999999999999999999886543 234544 334455554 467889999999988877 7888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~ 573 (670)
+++|||++++.+|.....|+..+....... +.|+++|+||+|+.+.... +++.+.++. .+++++||+
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPA----SEIAEGLNLHTIRDRVWQIQSCSAL 160 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcCcccCCCH----HHHHHHhCchhccCCceEEEEccCC
Confidence 999999999999999998888775432222 6999999999999864322 223333221 148999999
Q ss_pred cC-ChHHHHHHHHHHHhC
Q 005908 574 SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~ 590 (670)
+| |++++|+++.+.+..
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TCTTHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 99 999999999987653
No 194
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=1.4e-21 Score=185.67 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=119.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
..+.+||+|+|.+|||||||+|+|+++.+ ..+.+|.+... ..+... ...+.+||++|++.+..+ +..+++.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCG--GGGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 45679999999999999999999999887 33335655433 334444 377889999999988887 788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH-----HhCCCCcEEeeccc
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKS 574 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSA~~ 574 (670)
++++|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ..+++.+... ..++ +++++||++
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-HIQACCALT 166 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE-EEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhC--CCeEEEEEECCCcccCC-CHHHHHHHhCcccccCCce-EEEEccCCC
Confidence 9999999999999999999988887643222 69999999999997632 2222322221 1122 589999999
Q ss_pred C-ChHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWA 587 (670)
Q Consensus 575 g-~v~~l~~~l~~~ 587 (670)
| |++++|++|.+.
T Consensus 167 g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GEGLCQGLEWMMSR 180 (181)
T ss_dssp TBTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhh
Confidence 9 999999998753
No 195
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=205.88 Aligned_cols=159 Identities=12% Similarity=0.133 Sum_probs=119.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.++.+||+|+|++|||||||+++|++..+....|++. .. ...+...++.+.||||||++.+...+..+++.+|++|+
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~-~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETT-EE--EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccc-eE--EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4467899999999999999999999988765554322 21 12344567899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~ 161 (670)
|||++++.+++.+...|...++.. .+++|++||+||+|+.+.... ..+...++. ..++++|||++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH-------HHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 999999999999987555555443 358999999999999764322 222222221 126999999999
Q ss_pred CCchHHHHHHHHHHcC
Q 005908 162 IQVPDVFYYAQKAVLH 177 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (670)
.||+++|+.|.+.+..
T Consensus 312 ~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRN 327 (329)
T ss_dssp BTHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 196
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=1.5e-21 Score=184.41 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...+.++|+++|++|||||||+++|++..+.....+..........+..++..+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35678999999999999999999999988766532222222222234445678999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc-------cCCeEEEeCccc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-------EIETCVECSATT 160 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~SA~~ 160 (670)
+|+|+++........ ++..+... ++|+++|+||+|+..... ++ ......... ...++++|||++
T Consensus 84 ~v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANP----DR-VMQELMEYNLVPEEWGGDTIFCKLSAKT 154 (178)
T ss_dssp EEEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCH----HH-HHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred EEEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCH----HH-HHHHHHhcCcChhHcCCcccEEEEecCC
Confidence 999998854333322 33334333 799999999999976321 11 111112221 113799999999
Q ss_pred CCCchHHHHHHHHHHc
Q 005908 161 MIQVPDVFYYAQKAVL 176 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (670)
|.||+++|+++.+.+.
T Consensus 155 ~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 155 KEGLDHLLEMILLVSE 170 (178)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999988764
No 197
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=6.3e-21 Score=196.56 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=129.8
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEeCCcccCC-ceeEEEEeCCCCccch--------
Q 005908 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK-------- 73 (670)
Q Consensus 5 ~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------- 73 (670)
..+...+.-.|+|+|++|||||||+|+|++.++... .+++... .+...+... +..+.+|||||+.++.
T Consensus 3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~ 81 (308)
T 3iev_A 3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHS 81 (308)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecCCCCeEEEEECcCCCccccchhHHHH
Confidence 455677888999999999999999999999986532 3332221 122233444 8899999999986544
Q ss_pred --hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCC
Q 005908 74 --GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (670)
Q Consensus 74 --~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (670)
.....+++.+|++++|+|+++..++.+.. .|...++.. ++|+++|+||+|+...... ..+....+...++...
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~~--~~~~~~~l~~~~~~~~ 156 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAKN--VLPLIDEIHKKHPELT 156 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGGG--GHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHHH--HHHHHHHHHHhccCCC
Confidence 45568899999999999999988888765 468888775 8999999999999743332 4555667777775445
Q ss_pred eEEEeCcccCCCchHHHHHHHHHHcCCCCCCCcc
Q 005908 152 TCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDH 185 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~ 185 (670)
+++++||++|.|++++++.+.+.+... .+.+..
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~~-~~~~~~ 189 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPEG-EPLFPE 189 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCBC-CCSSCT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCccC-CCCCCc
Confidence 799999999999999999999887543 334443
No 198
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=2e-21 Score=186.41 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=118.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|++|||||||+++|+++.+.. +.||.+ +....++. ....+.+||++|++.+..+ +..+++.+|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 99 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPL--WRHYFQNTQG 99 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTT--HHHHHHTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence 467999999999999999999999887753 234544 33444544 3477889999999888877 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-------CCcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSA~ 573 (670)
+++|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+... .+++.+.++. .+++++||+
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELR--DAVLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcCC
Confidence 999999999999999999988887643322 699999999999976422 2333333332 148999999
Q ss_pred cC-ChHHHHHHHHHHHh
Q 005908 574 SK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~ 589 (670)
+| |++++|++|.+.+.
T Consensus 174 ~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTBTHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 99 99999999998764
No 199
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=6.7e-22 Score=188.40 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=119.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEc---CCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~t~~~~~~~~~vd~---~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
.+||+|+|++|||||||+++|++. .+...+.+|++.++....+.. .+....+.+||++|++++..+ ...+++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--HPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--SHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--hHHHccC
Confidence 479999999999999999999985 344444567665554444433 224567889999999999887 7788899
Q ss_pred ccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc----HHHHHHHHHHhCCC---CcEE
Q 005908 498 CDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQELGIE---PPIP 569 (670)
Q Consensus 498 ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~---~~~~ 569 (670)
+|++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+.... ....+.+++.++++ ++++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARAS----SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT----TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC----CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 9999999999998 578889999998876542 6899999999999864332 22334555555654 3899
Q ss_pred eecccC--ChHHHHHHHHHHHhCC
Q 005908 570 VSMKSK--DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 570 vSA~~g--~v~~l~~~l~~~~~~~ 591 (670)
+||++| +++++++.+.+.+...
T Consensus 156 ~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 156 VNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred EecccCchhHHHHHHHHHHHHhcc
Confidence 999998 6999999999988653
No 200
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=3.4e-21 Score=180.04 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhcc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~ 496 (670)
.++|+++|++|||||||+|+|.+..+...+.++++.+.....+...+ ..+.+||++|++.+. .+ ...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~--~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEII--ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHH--HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHH--HHHHHh
Confidence 47999999999999999999999876544445444444444555542 578899999987653 23 344554
Q ss_pred --cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 497 --~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
++|++++|+|+++. +....|+..+.+. +.|+++|+||+|+...+....+.+++++.++++ ++++||++
T Consensus 79 ~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~SA~~ 148 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL---ERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAAK 148 (165)
T ss_dssp HHCCSEEEEEEETTCH---HHHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGGG
T ss_pred cCCCCEEEEEecCCch---hHhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEEcCC
Confidence 89999999999874 3455677776653 699999999999865333333567888888875 99999999
Q ss_pred C-ChHHHHHHHHHHH
Q 005908 575 K-DLNNVFSRIIWAA 588 (670)
Q Consensus 575 g-~v~~l~~~l~~~~ 588 (670)
| |++++|+++.+.+
T Consensus 149 ~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 KMGIEELKKAISIAV 163 (165)
T ss_dssp TBSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 9 9999999998865
No 201
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4.8e-21 Score=181.94 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
++.+||+|+|++|||||||+|+|.++.+ ..+.+|.+. ....+..+ ...+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYK--NLKLNVWDLGGQTSIRPY--WRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEET--TEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence 4679999999999999999999998877 334456553 33444444 377889999999888777 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC----CCcEEeecccC-
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----EPPIPVSMKSK- 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~vSA~~g- 575 (670)
+++|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+.. ..+++.+....... .+++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999999999988886653222 79999999999997632 22222222211111 15899999999
Q ss_pred ChHHHHHHHHHHHh
Q 005908 576 DLNNVFSRIIWAAE 589 (670)
Q Consensus 576 ~v~~l~~~l~~~~~ 589 (670)
|+++++++|.+.+.
T Consensus 166 gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 166 GITEGLDWLIDVIK 179 (183)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 202
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=4e-21 Score=183.68 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=123.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
++.+||+|+|++|||||||+|+|.++.+.. +.+|++. ....+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPY--WRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCC--CSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhhcCCE
Confidence 456999999999999999999999887754 3456553 33444443 467889999999888777 7788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH----HHhCCCCcEEeecccC-
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK- 575 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g- 575 (670)
+++|+|++++.++.....|+..+....... +.|+++|+||+|+.+.....+..+.+. +..++ +++++||++|
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELR--KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTGD 169 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcC--CCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCcc
Confidence 999999999999999999888876643323 699999999999976432211111111 11122 5899999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 005908 576 DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 576 ~v~~l~~~l~~~~~~~ 591 (670)
|++++++++.+.+...
T Consensus 170 gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 170 GLVEGMDWLVERLREQ 185 (189)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988643
No 203
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=4e-21 Score=189.69 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=114.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCc------cc---hhhhHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL------EN---KGKLNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~---~~~~~~~ 79 (670)
.+.+||+|+|++|||||||+|+|++..+... .+.+.... ....+...+..+.+|||||+. .. ...+..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 4579999999999999999999999886422 22211111 111223356889999999983 21 1123345
Q ss_pred hccCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh--hhhhHHHHHhccCCeEEEe
Q 005908 80 LKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVEC 156 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (670)
+..+|++|+|||++++.++... ...|+..+....+++|+++|+||+|+...+.+ ... +....+....+...++++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEEEE
Confidence 7889999999999998776522 12366777665568999999999999876554 221 2344555554322379999
Q ss_pred CcccCCCchHHHHHHHHHHc
Q 005908 157 SATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 157 SA~~~~gi~~l~~~i~~~~~ 176 (670)
||++|.||+++|+.+.+.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999998775
No 204
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=6e-21 Score=199.58 Aligned_cols=165 Identities=21% Similarity=0.344 Sum_probs=138.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
.+..++|+++|.+|||||||++++++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 228 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTD 228 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGTTT--GGGGCTTCS
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEECCEEEEEEEEeCCCchhhhHH--HHHhccCCC
Confidence 456799999999999999999999998887777777776554 44566656667779999999988877 778899999
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC-------------cccHHHHHHHHHHhCCC
Q 005908 500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIE 565 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~ 565 (670)
++++|||++++.+|..+. .|+..+..... ++|+++|+||+|+.+. ....+++.++++.+++.
T Consensus 229 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 229 VFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 999999999999999887 78888877654 6999999999999653 23467788899999985
Q ss_pred CcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
+++++||++| |++++|+.|.+.+..+
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 6999999999 9999999999987653
No 205
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=3.5e-21 Score=185.00 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=110.3
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccchhh
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGK 75 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~ 75 (670)
.......++|+|+|++|||||||+|+|++..+.....++.+.+.....+.. +..+.+||||| ++.+...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 344556899999999999999999999998755443322222221001111 23699999999 5555666
Q ss_pred hHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--C
Q 005908 76 LNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--I 150 (670)
Q Consensus 76 ~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~ 150 (670)
+..+++.+ |++++|+|++++.++.... +...+... ++|+++|+||+|+...+.. ....+.+.+.+.. .
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTT
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCC
Confidence 77778777 9999999999988877653 55566554 8999999999999765433 2222333333321 2
Q ss_pred CeEEEeCcccCCCchHHHHHHHHHH
Q 005908 151 ETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 151 ~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
.+++++||++|.||+++|+++.+.+
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHHh
Confidence 4799999999999999999998765
No 206
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=4.8e-23 Score=199.76 Aligned_cols=161 Identities=20% Similarity=0.344 Sum_probs=131.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...+||+|+|.+|||||||+++|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDV 104 (204)
Confidence 45699999999999999999999998887776677765543 34455555667779999999888887 7778999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-------------ccHHHHHHHHHHhCCCC
Q 005908 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (670)
+++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. ...++..++++.++..+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
Confidence 99999999999999887 78777766543 58999999999997642 22456677788888756
Q ss_pred cEEeecccC-ChHHHHHHHHHHH
Q 005908 567 PIPVSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~~l~~~~ 588 (670)
++++||++| |++++|+.|.+.+
T Consensus 181 ~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999 9999999998754
No 207
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=4.2e-21 Score=212.00 Aligned_cols=162 Identities=11% Similarity=0.094 Sum_probs=123.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
.++.+||+|+|++|||||||+|+|++..+....+++. ... ..+...++.+.+|||+|++.+...+..+++.+|++|+
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~-~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG-FNV--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS-EEE--EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc-eeE--EEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 3467999999999999999999999998776655432 222 2345577899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc------CCeEEEeCcccC
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~ 161 (670)
|||++++.+++.+...|...++.. ..++|+|||+||+|+...... ..+...++. ..++++|||++|
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH-------HHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH-------HHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 999999999999986444444332 258999999999999764221 122222221 125999999999
Q ss_pred CCchHHHHHHHHHHcCCCC
Q 005908 162 IQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~ 180 (670)
.||+++|++|.+.+.....
T Consensus 469 ~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp BTHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 9999999999988754443
No 208
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=2.6e-20 Score=179.72 Aligned_cols=163 Identities=19% Similarity=0.343 Sum_probs=135.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
.+.+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+.|....+.+||++|++.+..+ ...+++.+|+
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~ 80 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVG 80 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHHhcCCE
Confidence 35689999999999999999999999988887788877777777888866677889999999888776 6778889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|+|+++..++..+..|+..+...... +.|+++|+||+|+.+... ...+++.++...++. ++++||+++ |++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE 156 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999888898877654322 589999999999976433 356788888888876 899999999 999
Q ss_pred HHHHHHHHHHh
Q 005908 579 NVFSRIIWAAE 589 (670)
Q Consensus 579 ~l~~~l~~~~~ 589 (670)
++|+.|.+.+.
T Consensus 157 ~l~~~l~~~~~ 167 (199)
T 2f9l_A 157 EAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 209
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=4.7e-20 Score=190.05 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=129.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCceEEEEEecCChhhHh----------h
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----------K 487 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~----------~ 487 (670)
....-.|+|+|++|||||||+|+|++..+..++.. |+.. .....+..+ ....+.+|||+|..... .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45567899999999999999999999998765542 3332 222333333 26778899999974322 3
Q ss_pred hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CCcccHHHHHHHHHHhC-CC
Q 005908 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELG-IE 565 (670)
Q Consensus 488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~-~~ 565 (670)
. ...+++.+|++++|+|++++.++.....|+..+... +.|+++|+||+|+. +........+.+.+.++ ..
T Consensus 85 ~--~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~ 156 (308)
T 3iev_A 85 I--AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELT 156 (308)
T ss_dssp H--HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCC
T ss_pred H--HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCC
Confidence 3 567889999999999999998888877777777653 69999999999998 55555777788888874 56
Q ss_pred CcEEeecccC-ChHHHHHHHHHHHhCCCCCCC
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP 596 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~~~~~~~~~~ 596 (670)
+++++||++| |++++++.+.+.+.......+
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~ 188 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPEGEPLFP 188 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence 7999999999 999999999999865443333
No 210
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.84 E-value=7e-21 Score=196.27 Aligned_cols=161 Identities=12% Similarity=0.140 Sum_probs=122.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCC-CCCCCeEeCCcccCCceeEEEEeCCCCccc-----hhhhHHHhcc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR 82 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~ 82 (670)
..+||+++|++|||||||+++|+++. +....+ ++.+.......+ .+++.+.+|||||++.+ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 56899999999999999999999874 333222 222222222222 34789999999999887 6778899999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHH---HhcCCCCCEEEEEeCCCCCC--CCC----ccchhhhhhHHHHHhcc-CCe
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPEL---RRLEIKVPIIVAGCKLDLRG--DHN----ATSLEEVMGPIMQQFRE-IET 152 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l---~~~~~~~pvilv~NK~Dl~~--~~~----~~~~~~~~~~~~~~~~~-~~~ 152 (670)
+|++|+|||++++.+++++.. |...+ +...+++|+++|+||+|+.. .+. + ..+.+..++..++. ..+
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v--~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQI--MMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHH--HHHHHHHHHHTTTCCSCE
T ss_pred CCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHH--HHHHHHHHHHHcCCCCeE
Confidence 999999999999999999863 64444 44567899999999999976 222 2 23455677777762 248
Q ss_pred EEEeCcccCCCchHHHHHHHHHHc
Q 005908 153 CVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 153 ~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+++|||++ .|+.++|..++..+.
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEEeeecC-ChHHHHHHHHHHHHc
Confidence 99999999 899999998888654
No 211
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=7.4e-21 Score=181.54 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=118.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHh
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEEL 80 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~ 80 (670)
+.++.++|+++|++|||||||+++|++..+... .+++.. ......+...+..+.+|||||++.+. .....++
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTV-EKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeec-cceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 345779999999999999999999998764333 444322 22223344456899999999998764 3455666
Q ss_pred c--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 81 K--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 81 ~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+ .+|++++|+|.++ ++... .|...+... ++|+++|+||+|+...+.+ . .....+++.++ .+++++||
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~Sa 150 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSA 150 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBG
T ss_pred hccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhC--CCeEEEEe
Confidence 4 4999999999875 44444 477777664 8999999999998654443 2 34566777776 37999999
Q ss_pred ccCCCchHHHHHHHHHHcCCC
Q 005908 159 TTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~ 179 (670)
++|.||+++|+.+.+.+....
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC-
T ss_pred cCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999886554
No 212
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=1.6e-20 Score=188.30 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=119.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh------hHHHh--
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL-- 80 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~-- 80 (670)
++.++|+++|++|||||||+|+|++..+. .+.|++.. ......+...+..+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV-EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceE-EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999998753 33554332 2233344556789999999999876542 24555
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
..+|++++|+|+++.++.. +|...+... ++|+++|+||+|+...+.+ . .....+.+.++ .+++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg--~~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLG--IPVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHC--SCEEECCTTT
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcC--CCEEEEEeeC
Confidence 5899999999999876533 366666665 8999999999998765444 2 23567778887 3899999999
Q ss_pred CCCchHHHHHHHHHHcC
Q 005908 161 MIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~ 177 (670)
|.||+++|+.+.+.+..
T Consensus 151 g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQK 167 (258)
T ss_dssp CTTHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 99999999999987753
No 213
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=1.3e-20 Score=180.82 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccch
Q 005908 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENK 73 (670)
Q Consensus 4 ~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~ 73 (670)
+........+||+|+|++|||||||+|+|++..+....+. .+.+. .......+..+.+||||| ++.+.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT-PGKTR-SINFYLVNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS-CCCCC-CEEEEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCC-CCCcc-CeEEEEECCcEEEEECCCCccccCChhhHHHHH
Confidence 3444556789999999999999999999999874433222 21211 111222234688999999 44455
Q ss_pred hhhHHHhccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC
Q 005908 74 GKLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (670)
Q Consensus 74 ~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (670)
..+..+++.+ |++++|+|+++..+..... +...+... ++|+++|+||+|+.+........+....+....+.
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~- 167 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE- 167 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-
Confidence 6666777766 9999999998765544432 55556655 79999999999997543321222333444444332
Q ss_pred CeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 151 ETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 151 ~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.++++|||++|.||+++|+++.+.+.
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhh
Confidence 37999999999999999999988764
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=7e-21 Score=179.24 Aligned_cols=153 Identities=24% Similarity=0.277 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhh--------hHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 79 (670)
++.+||+|+|++|||||||+|+|++..+ ....+++.... ....+..++..+.+|||||+.++... ...+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3568999999999999999999998764 23344432221 11223334567999999998754221 1246
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
++.+|++++|||++++.+++.. .|+..+.... .++|+++|+||+|+...... ... ..+ .++++|||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~-------~~~--~~~~~~SA 147 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--MSE-------VNG--HALIRLSA 147 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EEE-------ETT--EEEEECCT
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--hhh-------ccC--CceEEEeC
Confidence 8999999999999998887643 4777776543 47999999999998643211 111 111 36999999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 005908 159 TTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~ 176 (670)
++|.||+++|+.+.+.+.
T Consensus 148 ~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTCTTHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999988753
No 215
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=196.43 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=116.3
Q ss_pred CCceeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCCCCCCc-ccceEEEE--------E------EcCCCce
Q 005908 420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVNV--------V------DQPGGNK 472 (670)
Q Consensus 420 ~~~~~kI~ivG~~---------~vGKSSLin~l~~---~~~~~~~~~t~-~~~~~~~~--------v------d~~g~~~ 472 (670)
....+||+|+|.+ |||||||+|+|++ ..+...+.+|+ +.++.... . ..++...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999999 55555555654 32222111 1 1234556
Q ss_pred EEEEEe-----------------------cCChhhHhhhhchHhhcc---------------------cccEEEEEEECC
Q 005908 473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDSS 508 (670)
Q Consensus 473 ~~~i~d-----------------------~~g~~~~~~~~~~~~~~~---------------------~ad~vllv~D~s 508 (670)
.+.+|| ++|++++..+ +..+++ ++|++|+|||++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA--EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECT--TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhh--hhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 778898 4455555544 444555 799999999999
Q ss_pred Cc--ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh-CCCCcEEeecccC-ChHHHHHHH
Q 005908 509 DE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNVFSRI 584 (670)
Q Consensus 509 ~~--~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g-~v~~l~~~l 584 (670)
++ .+|+.+..|+..+....... ++|+++|+||+|+...+.. ++.+++++.. ++ +++++||++| |++++|++|
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKT--KKPIVVVLTKCDEGVERYI-RDAHTFALSKKNL-QVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHT--TCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccC--CCCEEEEEEcccccccHHH-HHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHH
Confidence 98 99999999999887652212 6999999999999764332 5666777664 55 5999999999 999999999
Q ss_pred HHHHh
Q 005908 585 IWAAE 589 (670)
Q Consensus 585 ~~~~~ 589 (670)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 216
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=1.9e-20 Score=188.88 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccch------hhhHHHhc--c
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R 82 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 82 (670)
.++|+++|++|||||||+|+|++.. +..++|++.... ....+.. +..+.+|||||+..+. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 5899999999999999999999876 555566533322 2223334 6789999999998765 34456665 6
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCC
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
+|++++|+|+++.++.. +|...+... ++|+++|+||+|+...+.+ . .....+.+.++ .++++|||++|.
T Consensus 81 ~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg--~~vi~~SA~~g~ 149 (272)
T 3b1v_A 81 ADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLG--VPVVATSALKQT 149 (272)
T ss_dssp CSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBTTTTB
T ss_pred CCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcC--CCEEEEEccCCC
Confidence 99999999998865432 366666664 8999999999998654443 2 33466777776 379999999999
Q ss_pred CchHHHHHHHHHHc
Q 005908 163 QVPDVFYYAQKAVL 176 (670)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (670)
||+++|+.+.+.+.
T Consensus 150 gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 150 GVDQVVKKAAHTTT 163 (272)
T ss_dssp SHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988654
No 217
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.84 E-value=6.5e-20 Score=203.92 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=118.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEe--------CCcc--cCCceeEEEEeCCCCccchhhhH
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLN 77 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~ 77 (670)
.....+||+++|.+|||||||+++|++..+.....++.+.... ...+ ...++.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4667899999999999999999999999887664443333221 1222 23478999999999999999999
Q ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 78 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
.+++.+|++|+|||+++.+.. . +|...+....+++|+|+|+||+|+...+.+ . .+.........+ .++++||
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~---~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~vS 188 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNK---H-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI-E-QKKINERFPAIE--NRFHRIS 188 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGH---H-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC-C-HHHHHHHCGGGT--TCEEECC
T ss_pred HHccCCcEEEEEEeCCCchhH---H-HHHHHHHHhCCCCCEEEEEECCCccccccc-C-HHHHHHHHHhcC--CceEEEe
Confidence 999999999999999876443 3 599999888778999999999999876654 2 334455555554 3699999
Q ss_pred cccCCCchHHHHHHHHHHcCCC
Q 005908 158 ATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~~~ 179 (670)
|++|.||+++++.+.+.+....
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTT
T ss_pred cCcccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887643
No 218
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.4e-21 Score=191.85 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=113.5
Q ss_pred CCCcceEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCCC-CCeE--eCCc--------------ccCCc
Q 005908 8 SSRTGVRVVVVGDR---------GTGKSSLIAAAAT---ESVPEKVPPVH-APTR--LPPD--------------FYPDR 58 (670)
Q Consensus 8 ~~~~~~kI~ivG~~---------~vGKSSLi~~l~~---~~~~~~~~~~~-~~~~--~~~~--------------~~~~~ 58 (670)
...+.+||+|+|++ |||||||+++|++ ..+.....++. +... .... ++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 9999999999999 44544433221 1111 1111 23467
Q ss_pred eeEEEEe-----------------------CCCCccchhhhHHHhc---------------------cCCEEEEEEECCC
Q 005908 59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ 94 (670)
Q Consensus 59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~ii~v~d~~~ 94 (670)
+.+.||| ++|++.+...+..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5566655555556666 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 95 ~--~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
+ .+++.+.. |+..+... ..++|++||+||+|+...+.+ +....++..... .++++|||++|.||+++|+.
T Consensus 175 ~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 175 GMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred CchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence 8 99999884 88877653 358999999999999654322 334555554322 37999999999999999999
Q ss_pred HHHHH
Q 005908 171 AQKAV 175 (670)
Q Consensus 171 i~~~~ 175 (670)
+.+.+
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 219
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=9.2e-21 Score=186.29 Aligned_cols=168 Identities=12% Similarity=0.021 Sum_probs=114.2
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCCCCCCeEeCCccc-CCceeEEEEeCCCCcc----------c
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLE----------N 72 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~----------~ 72 (670)
......++|+|+|.+|||||||+|+|++..+ ....+++..... ...+. ..+..+.||||||... +
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3445679999999999999999999999872 222333322222 12222 4568899999999643 3
Q ss_pred hhhhHHHhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh--
Q 005908 73 KGKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-- 147 (670)
Q Consensus 73 ~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 147 (670)
...+..+++. +|++++|+|+++..+... ..|...++.. ++|+++|+||+|+..........+.+......+
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 4455566666 788999999987655433 2477777765 899999999999976432201112222222332
Q ss_pred ---ccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 148 ---REIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 148 ---~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
....+++++||++|.||+++++.+.+.+..+.
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 22347999999999999999999999876543
No 220
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=1.9e-20 Score=173.66 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc-------chhhhHHHhccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLNEELKRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a 83 (670)
.||+++|++|||||||+++|.+..+. ...+++.... ....+...+..+.+|||||+.. +...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999988743 2233322111 1122334556899999999886 334456788999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 163 (670)
|++++|+|+++..+... ..+...++.. ++|+++|+||+|+.+.. +....+. +++ ..+++++||++|.|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~-~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLG-FGDPIPTSSEHARG 148 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGS-SCSCEECBTTTTBS
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCC-CCCeEEEecccCCC
Confidence 99999999998655443 2355555554 79999999999997542 2222333 344 23699999999999
Q ss_pred chHHHHHHHHHH
Q 005908 164 VPDVFYYAQKAV 175 (670)
Q Consensus 164 i~~l~~~i~~~~ 175 (670)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 221
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=4.3e-20 Score=180.29 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-ceEEEEEecCChhhHhh-hhchHhhcccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASC 498 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~a 498 (670)
+..+||+|+|.+|||||||+++|+++.+...+.+ +...+. .+.+++. ...+.+||++|++.+.. + ...+++.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~ 79 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQL--LDRFKSSA 79 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHH--HHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHH--HHHHHhhC
Confidence 3468999999999999999999999987766643 333333 2566644 57889999999998887 6 67789999
Q ss_pred cEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--------------
Q 005908 499 DVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-------------- 563 (670)
Q Consensus 499 d~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-------------- 563 (670)
|++++|||+++.. ++.....++..+.........++|+++|+||+|+..........+.+.+.++
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999999853 4555555444433221111116899999999999875443322222222211
Q ss_pred -----------------------CCCcEEeecccC-------ChHHHHHHHHHH
Q 005908 564 -----------------------IEPPIPVSMKSK-------DLNNVFSRIIWA 587 (670)
Q Consensus 564 -----------------------~~~~~~vSA~~g-------~v~~l~~~l~~~ 587 (670)
..+++++||++| |++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 224899999998 899999999875
No 222
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=3.5e-20 Score=175.05 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=118.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....++|+|+|.+|||||||+|+|++..+...+.++++.++....+..++ ..+.+||++|++.+..+ ...++..+|
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d 80 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTM--RARGAQVTD 80 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCS--CCSSCCCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHH--HHHHHhhCC
Confidence 35678999999999999999999999988776666665555545555553 45678999999888877 677889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC--------CCcEEee
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS 571 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS 571 (670)
++++|+|++++..... ...+..+... +.|+++|+||+|+.+.. .+.........+. .+++++|
T Consensus 81 ~~i~v~d~~~~~~~~~-~~~l~~~~~~------~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 81 IVILVVAADDGVMPQT-VEAINHAKAA------NVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEEETTCCCCHHH-HHHHHHHGGG------SCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEEECCCCCcHHH-HHHHHHHHhC------CCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 9999999998644222 2223333221 69999999999998632 2222222222221 2589999
Q ss_pred cccC-ChHHHHHHHHHHHhCCCC
Q 005908 572 MKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
|++| |++++|++|.+.+...+.
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhcc
Confidence 9999 999999999998865443
No 223
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=1.8e-20 Score=180.39 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=115.0
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceE--EEEEEcC-CCceEEEEEecCChhhHhhhhch---H
Q 005908 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA--VNVVDQP-GGNKKTLILQEIPEEGVKKILSN---K 492 (670)
Q Consensus 419 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~--~~~vd~~-g~~~~~~i~d~~g~~~~~~~~~~---~ 492 (670)
..++.+||+++|.+|||||||++++.+..... ++.+..+. .....+. +....+.+||++|++.+..+ . .
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~ 90 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFDYE 90 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCCHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhhcc
Confidence 34567999999999999999999988853332 22222211 1222222 45678889999999888776 4 7
Q ss_pred hhcccccEEEEEEECCCc--ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------ccHHHHHHHHH--
Q 005908 493 EALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MAVQDSARVTQ-- 560 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~-- 560 (670)
.+++++|++|+|||++++ +++..+..|+..+..... +.|+++|+||+|+.+.. ......+++++
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 889999999999999997 566666667666644333 69999999999987632 11344566666
Q ss_pred --HhCCCCcEEeecccCChHHHHHHHHHHH
Q 005908 561 --ELGIEPPIPVSMKSKDLNNVFSRIIWAA 588 (670)
Q Consensus 561 --~~~~~~~~~vSA~~g~v~~l~~~l~~~~ 588 (670)
.+++. ++++||++.|++++|+.+++.+
T Consensus 167 ~~~~~~~-~~e~Sa~~~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLS-FYLTSIYDHSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEE-EEEECTTSTHHHHHHHHHHHHT
T ss_pred hhcCCcc-eEEEEechhhHHHHHHHHHHHh
Confidence 44554 9999999978999999998864
No 224
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=6.4e-20 Score=175.75 Aligned_cols=162 Identities=20% Similarity=0.349 Sum_probs=137.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
...++|+|+|++|||||||+++|.+..+...+.+|++.++....+.+.|....+.+||++|.+++..+ ...+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--TSAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--CHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--hHHHhhcCCE
Confidence 45799999999999999999999999988888888888777777888865667778999998877776 6778889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhCCCCcEEeecccC-ChH
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~ 578 (670)
+++|+|+++..+++.+..|+..+...... +.|+++|+||+|+.+.. .....++.++...++. ++++||+++ |++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v~ 180 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVE 180 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999998898888888877654322 58999999999997633 3366788888888875 899999999 999
Q ss_pred HHHHHHHHHH
Q 005908 579 NVFSRIIWAA 588 (670)
Q Consensus 579 ~l~~~l~~~~ 588 (670)
++|+.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 225
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.83 E-value=8.4e-20 Score=176.13 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=126.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
..+||+|+|++|||||||+++|++..+.....++.+... ..+.+.+..+.+.+|||+|++.+......+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999999987665433333222 233444556788999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
|+|+++..+++.+.. |+..+... ..+.|+++|+||+|+...+.+ .. +....++...+ ..++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~-~~a~~l~~~~~--~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV-PT-DEARAFAEKNN--LSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccccCc-CH-HHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence 999999999988774 87777654 347899999999999765544 22 33556666665 36999999999999999
Q ss_pred HHHHHHHHc
Q 005908 168 FYYAQKAVL 176 (670)
Q Consensus 168 ~~~i~~~~~ 176 (670)
|+.+.+.+.
T Consensus 159 ~~~l~~~~~ 167 (199)
T 2f9l_A 159 FKNILTEIY 167 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 226
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=5e-21 Score=194.69 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh---hhHHHhccCCEEE
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---KLNEELKRADAVV 87 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~ii 87 (670)
||+++|+.|||||||++++.++.+... ..++.+..... + ...++++||||+|+++|.. .+..++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 799999999999999999887654332 11222221111 2 2458899999999999864 4689999999999
Q ss_pred EEEECCChhhHHHHHHHH---HHHHHhcCCCCCEEEEEeCCCCCCCCCc-----cchhhhhhHHHHHh--ccCCeEEEeC
Q 005908 88 LTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQQF--REIETCVECS 157 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~S 157 (670)
+|||++++ .++... .| +..++...+++|+++||||+|+..+... ....+..+.+++.. +.-.+|++||
T Consensus 78 lV~Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 78 YVIDSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EECCCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 99999998 333322 34 4444555679999999999999764210 01122223333320 0113799999
Q ss_pred cccCCCchHHHHHHHHHHcC
Q 005908 158 ATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~ 177 (670)
|++ .||.++|..+++.+.+
T Consensus 156 Akd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSST
T ss_pred cCC-CcHHHHHHHHHHHHHh
Confidence 998 5899999999887664
No 227
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=192.57 Aligned_cols=157 Identities=21% Similarity=0.242 Sum_probs=119.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (670)
+..+||+|+|.+|||||||+++|.++.+.... +|++. ....++. ....+.+||++|++.+..+ ...+++.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~--~~~~~~~--~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ 235 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF--NVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQG 235 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTE--EEEEEEE--TTEEEEEEECC-----CCS--HHHHHTTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccce--EEEEEec--CcEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence 46689999999999999999999998865443 44443 2333443 4577889999999999888 7889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeecc
Q 005908 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA~ 573 (670)
+|+|||++++.+|..+..++..+....... ++|+++|+||+|+.+... .+++...++.. +++++||+
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk 309 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCAT 309 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTT
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECC
Confidence 999999999999999998888776544322 699999999999987432 23344444332 48999999
Q ss_pred cC-ChHHHHHHHHHHHhC
Q 005908 574 SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~ 590 (670)
+| |++++|+.|.+.+.+
T Consensus 310 ~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 310 SGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTBTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 99 999999999998764
No 228
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=9.9e-20 Score=186.52 Aligned_cols=158 Identities=22% Similarity=0.170 Sum_probs=114.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCcc--------chhhhHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 79 (670)
.+..+|+|+|++|||||||+|+|++.++.. ..+++... .+...+...+..+.+|||||+.+ +......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 456789999999999999999999988653 23332221 12222345678999999999876 34455678
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++.+|++++|+|++++.+... ..+.+.++...+++|+++|+||+|+..... + +......+....+++++||+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCTT
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeCC
Confidence 999999999999998765543 234567766556799999999999875322 0 12223333223479999999
Q ss_pred cCCCchHHHHHHHHHHc
Q 005908 160 TMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (670)
+|.|++++++.+.+.+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987654
No 229
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-20 Score=179.25 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCC-----------CccchhhhHHHh
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSS-----------SLENKGKLNEEL 80 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~ 80 (670)
+||+++|++|||||||+++|++..+... .+++... .....+ . .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999887655 3332211 111111 1 689999999 455566666777
Q ss_pred cc-CCEEEEEEECCChhhHHHHHHHHHHH---------HHh-cCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908 81 KR-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (670)
Q Consensus 81 ~~-ad~ii~v~d~~~~~s~~~~~~~~~~~---------l~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (670)
+. ++++++|+++.+..++..+.+.|... ++. ...++|+++|+||+|+.... .+..+.+++.++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhh
Confidence 77 78777777777788888775556542 111 12489999999999997642 3445667777763
Q ss_pred C-----CeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 150 I-----ETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 150 ~-----~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
. .++++|||++|.||+++|+++.+.+...
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 1 1479999999999999999999887543
No 230
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.82 E-value=1.3e-19 Score=173.53 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=126.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeE--eCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
...++|+|+|++|||||||+++|++..+.....++.+... ..+.+++..+.+.+|||+|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3468999999999999999999999887665444333222 23344455667888999999998888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
+|+|+++..+++++. .|...++.. ..+.|+++|+||+|+.+.+.. . .+....++.+.+ ..++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~-~~~a~~l~~~~~--~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TDEARAFAEKNG--LSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 999999999998876 487777653 347899999999999765444 2 234566666655 3699999999999999
Q ss_pred HHHHHHHHH
Q 005908 167 VFYYAQKAV 175 (670)
Q Consensus 167 l~~~i~~~~ 175 (670)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 231
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=7.2e-20 Score=202.14 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=125.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccccc
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (670)
....+||+|+|.+|||||||+|+|+++++... .+|.+ .....++.. ...+.+||++|++.+..+ +..+++.+|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~ad 391 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQ 391 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEESS--SCEEEEEEECCCGGGSGG--GGGGGTTCC
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccc--eeEEEEEeC--CEEEEEEECCCcHHHHHH--HHHHhccCC
Confidence 34579999999999999999999999886543 35554 334445554 367889999999999888 888999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCC-------CcEEeec
Q 005908 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 572 (670)
Q Consensus 500 ~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSA 572 (670)
++|+|||++++.+|..+..|+..+....... ++|+|+|+||+|+.+... .+++.+.++.. +++++||
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECCSSSSCCC----HHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhhhcC--CCcEEEEEECCCCCcCCC----HHHHHHHhchhhhhcCCeEEEEEEC
Confidence 9999999999999999999998887654323 699999999999976322 22334444332 4899999
Q ss_pred ccC-ChHHHHHHHHHHHhCCCCCCCC
Q 005908 573 KSK-DLNNVFSRIIWAAEHPHLNIPE 597 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~~~~~~~~~ 597 (670)
++| |++++|++|.+.+......+++
T Consensus 466 ~~g~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC--------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 999 9999999999998776655543
No 232
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=4.9e-20 Score=199.73 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=123.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH--------HH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~ 79 (670)
+..++|+|+|.+|||||||+|+|++.. ++...+++.... ....+..+++.+.+|||||+.++...++ .+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~-~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY-IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE-EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 356899999999999999999999886 344455432221 2334445678999999999977654433 46
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++.+|++|+|+|++++.+++.+. .+...++... ++|+++|+||+|+...... . .+.+... + ..++++|||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-~----~~~l~~~-~-~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELT-EIRELKAAHP-AAKFLTVANKLDRAANADA-L----IRAIADG-T-GTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHCT-TSEEEEEEECTTSCTTTHH-H----HHHHHHH-H-TSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhH-HHHHHHHhcC-CCCEEEEEECcCCCCccch-h----HHHHHhc-C-CCceEEEEEC
Confidence 88999999999999998875433 2444444433 7999999999999765433 1 1223332 1 1479999999
Q ss_pred cCCCchHHHHHHHHHHc-CCCC----CCCc-cccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHh
Q 005908 160 TMIQVPDVFYYAQKAVL-HPTA----PLFD-HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQ 222 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~-~~~~----~~~~-~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q 222 (670)
+|.||+++++.+.+.+. .... +... .+.......+..+|++.....+......+..++++...
T Consensus 381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~ 449 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAAL 449 (476)
T ss_dssp TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999886 3321 1222 22223456677777776665555555566666665543
No 233
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=2.7e-20 Score=186.33 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh----------hhHHHh-
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL- 80 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~- 80 (670)
.+|+++|++|||||||+|+|++..+. .+.|++.. ......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTV-EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSS-EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceE-EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 48999999999999999999998743 33555332 223334445567899999999987653 344566
Q ss_pred -ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 81 -~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
+.+|++|+|+|+++.++... +...+... ++|+++|+||+|+...+.. ......+.+.++ .+++++||+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~vi~~SA~ 149 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLG--CSVIPIQAH 149 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHC--SCEEECBGG
T ss_pred hCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcC--CCEEEEECC
Confidence 89999999999998655443 55555555 8999999999998765433 223456777776 389999999
Q ss_pred cCCCchHHHHHHHHH
Q 005908 160 TMIQVPDVFYYAQKA 174 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (670)
+|.||+++++.+.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999887
No 234
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=9.5e-20 Score=168.93 Aligned_cols=150 Identities=23% Similarity=0.297 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh-------HhhhhchHhhc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILSNKEAL 495 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~ 495 (670)
+||+++|++|||||||+|+|.+..+..... ++++.+.....+...+ ..+.+||++|... +... ...++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEK--VDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHH--HHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHH--HHHHH
Confidence 689999999999999999999987653322 3333344445555553 4678899999865 2233 56678
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 575 (670)
+.+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.+.+ +..++++ .+++.+++++||++|
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~------~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQAD-YEVAEYLRRK------GKPVILVATKVDDPKHE---LYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHH-HHHHHHHHHH------TCCEEEEEECCCSGGGG---GGCGGGG-GGSSCSCEECBTTTT
T ss_pred HhCCEEEEEEECCCcccHhH-HHHHHHHHhc------CCCEEEEEECcccccch---HhHHHHH-hCCCCCeEEEecccC
Confidence 99999999999998755432 2222333332 69999999999998642 3344455 577757999999999
Q ss_pred -ChHHHHHHHHHHH
Q 005908 576 -DLNNVFSRIIWAA 588 (670)
Q Consensus 576 -~v~~l~~~l~~~~ 588 (670)
|++++|+++.+.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 9999999998864
No 235
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=1.7e-19 Score=173.06 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhhc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS 490 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~~ 490 (670)
...++|+|+|.+|||||||+|+|++..+.....++.+..........+ + .+.+||++| ++.+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-- 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRM-- 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHH--
Confidence 467999999999999999999999987554444444433333444444 2 477899999 7777665
Q ss_pred hHhhcccc---cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC---
Q 005908 491 NKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--- 564 (670)
Q Consensus 491 ~~~~~~~a---d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--- 564 (670)
...+++.+ |++++|+|++++.++.... +...+... +.|+++|+||+|+.+........+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 55666666 9999999999988876543 23333332 69999999999998755444444555554432
Q ss_pred CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 565 EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 565 ~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
.+++++||++| |++++|++|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 36999999999 99999999998764
No 236
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=1.2e-19 Score=186.97 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=123.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhH-----hhhhchHh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE 493 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~-----~~~~~~~~ 493 (670)
..+||+++|++|||||||+|+|+++..... +.+|.+..+ ..+.+. +...+.+||++|++.+ ..+ +..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~--~~~ 76 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFL-GNMTLNLWDCGGQDVFMENYFTKQ--KDH 76 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEET-TTEEEEEEEECCSHHHHHHHHTTT--HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeC-CceEEEEEECCCcHHHhhhhhhhH--HHH
Confidence 358999999999999999999998744432 224444333 344445 4678899999999887 455 778
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--Cc-----ccHHHHHHHHHHhCC--
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-----MAVQDSARVTQELGI-- 564 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~--~~-----~~~~~~~~~~~~~~~-- 564 (670)
+++++|++|+|||++++.+|+.+..|...+....... .++|+++|+||+|+.+ .+ ...++++++++.+++
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 8899999999999999999999877755443322100 1699999999999987 33 234778889999885
Q ss_pred CCcEEeecccCChHHHHHHHHHHH
Q 005908 565 EPPIPVSMKSKDLNNVFSRIIWAA 588 (670)
Q Consensus 565 ~~~~~vSA~~g~v~~l~~~l~~~~ 588 (670)
.+++++||+++|+.++|..+++.+
T Consensus 156 ~~~~~tSa~~~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWDESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeeecCChHHHHHHHHHHHH
Confidence 469999999988899998888754
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=6.1e-20 Score=175.16 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL 495 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~ 495 (670)
..++|+++|++|||||||+|+|++..+.....++++.+.....+... ...+.+||++|++.+. .+ ...++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH--HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH--HHHHH
Confidence 56899999999999999999999976654444555555555556655 3678889999987653 23 34455
Q ss_pred c--cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 496 A--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 496 ~--~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
+ .+|++++|+|+++ ++....|+..+... +.|+++|+||+|+..........+++++.++++ ++++||+
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 151 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAA 151 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGG
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEEec
Confidence 3 5999999999875 56667777777653 699999999999876443445678888888875 9999999
Q ss_pred cC-ChHHHHHHHHHHHhCCC
Q 005908 574 SK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~~~ 592 (670)
+| |++++|+.+.+.+....
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99 99999999999987543
No 238
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=5.7e-20 Score=186.21 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=115.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh----------hhHHH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE 79 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~ 79 (670)
+.++|+++|++|||||||+|+|++..+... .+++. .......+...+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS-SEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee-EEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 579999999999999999999999874322 55533 2223334445567899999999887652 12233
Q ss_pred --hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 80 --~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
.+.+|++|+|+|+++.+... +|...+... ++|+++|+||+|+...+.. ......+.+.++ .+++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLG--CPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHT--SCEEECC
T ss_pred HhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcC--CCEEEEE
Confidence 37999999999998865443 355666665 8999999999998654433 223466777776 3799999
Q ss_pred cccCCCchHHHHHHHHHHcCC
Q 005908 158 ATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~~ 178 (670)
|++|.||+++++.+.+.+...
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998766543
No 239
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=9.9e-20 Score=182.57 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=119.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhh----chHhhc-
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL- 495 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~- 495 (670)
.+.++|+++|.+|||||||+|+|++..+.....++++.......+... ...+.+||++|...+.... -...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 356899999999999999999999987654434444444444444443 4678899999986554310 023444
Q ss_pred -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
..+|++++|+|+++.++ ...|...+... +.|+++|+||+|+...+......+++++.++++ ++++||++
T Consensus 81 ~~~~d~ii~V~D~t~~~~---~~~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~SA~~ 150 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQ---SLYLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFTSSVT 150 (258)
T ss_dssp HSCCSEEEEEEETTSCHH---HHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEECCTTT
T ss_pred hcCCCEEEEEeCCCchhh---HHHHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEEEeeC
Confidence 58999999999998644 33466666544 699999999999876544445578899999976 99999999
Q ss_pred C-ChHHHHHHHHHHHhCC
Q 005908 575 K-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~ 591 (670)
| |++++|+.+.+.+..+
T Consensus 151 g~gi~el~~~i~~~~~~~ 168 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQKN 168 (258)
T ss_dssp CTTHHHHHHHHHHHHHSS
T ss_pred CcCHHHHHHHHHHHhhcc
Confidence 9 9999999999987643
No 240
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=1.6e-19 Score=195.70 Aligned_cols=187 Identities=15% Similarity=0.074 Sum_probs=114.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhh------hchHh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKE 493 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~------~~~~~ 493 (670)
+..++|+|+|.+|||||||+|+|++.++..+.+ ++++.+.....+..+| ..+.+|||+|...+... .++..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 456899999999999999999999987654443 4344344445566653 56888999998655432 23466
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
+++.+|++++|+|++++.+++....+...+.... ++|+++|+||+|+.+.... ..+++.+. +..+++++||+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~--~~~~l~~~-~~~~~i~vSAk 380 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADA--LIRAIADG-TGTEVIGISAL 380 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHH--HHHHHHHH-HTSCEEECBTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccch--hHHHHHhc-CCCceEEEEEC
Confidence 8899999999999999988754333333222221 5899999999999875432 22344444 33569999999
Q ss_pred cC-ChHHHHHHHHHHHh-CCCCCCCCCcccccHHHHHHHhhhhhhhhc
Q 005908 574 SK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRKRYRHLVNSSLVFVS 619 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (670)
+| |+++++++|.+.+. .+... + ......+.+|.++++++..++.
T Consensus 381 tg~GI~eL~~~i~~~~~~~~~~~-~-~~~~~~~~R~~~~l~~a~~~L~ 426 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVKNLDKLH-E-ASVLVTSLRHYEALRNASDALQ 426 (476)
T ss_dssp TTBSHHHHHHHHTHHHHSSCCCC-T-TSCCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCC-C-cccccccHHHHHHHHHHHHHHH
Confidence 99 99999999999987 54322 1 2224456677777777666544
No 241
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.81 E-value=2.7e-19 Score=176.48 Aligned_cols=161 Identities=13% Similarity=0.056 Sum_probs=113.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCCh------hh----Hhhhhc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS 490 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~------~~----~~~~~~ 490 (670)
...++|+|+|.+|||||||+|+|++..+.....+.++.......+... ...+.+||++|. +. +..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTI-- 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHH--
Confidence 467999999999999999999999988763333333333444444443 367888999998 32 2222
Q ss_pred hHhhcccccEEEEEEECCCcccHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-H---HHHHHHHHHhC-
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-V---QDSARVTQELG- 563 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~---~~~~~~~~~~~- 563 (670)
..++..+|++|+|||++++.+|. ....|+..+..... +.|+++|+||+|+.+.+.. . ...++++...+
T Consensus 103 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 103 -TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS----NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp -HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred -HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc----CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 34467889999999999987764 23456666554322 5899999999999875443 2 24566666665
Q ss_pred CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 564 IEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 564 ~~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
..+++++||++| |++++|++|.+.+..
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 124999999999 999999999998753
No 242
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=6.1e-20 Score=175.35 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC-----------hhhHhhhhchH
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK 492 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g-----------~~~~~~~~~~~ 492 (670)
+||+|+|.+|||||||+|+|++..+...+.++++.... .+... .+.+||++| ++.+..+ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDE--IV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHH--HH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHH--HH
Confidence 68999999999999999999999877665555443222 22222 466789998 6667666 56
Q ss_pred hhccc-ccEEEEEEECCCcccHHHH-HHHHHH--------HHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHh
Q 005908 493 EALAS-CDVTIFVYDSSDEYSWKRT-KELLVE--------VARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562 (670)
Q Consensus 493 ~~~~~-ad~vllv~D~s~~~s~~~~-~~~~~~--------i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 562 (670)
.+++. ++++++|+++.+..++..+ ..|... +....... +.|+++|+||+|+.... .+..+++++.+
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 149 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV--QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence 66666 7766666666667777766 455432 22211111 69999999999998754 56788889999
Q ss_pred CCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 563 GIE------PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 563 ~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+.+ +++++||++| |++++|+++.+.+..
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 874 3699999999 999999999998764
No 243
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.81 E-value=2e-19 Score=182.32 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=116.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchh------hhHHHh--c
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K 81 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~ 81 (670)
+.++|+++|++|||||||+|+|++..+... .+++. .......+...+..+.+|||||+..+.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT-VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS-CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE-EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 568999999999999999999999876333 44432 2223334445667899999999987665 444555 6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccC
Q 005908 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (670)
Q Consensus 82 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 161 (670)
.+|++++|+|+++.+. .. +|...+.... .+|+++|+||+|+...+.. .. ....+.+.++ .+++++||++|
T Consensus 81 ~~d~vi~v~D~~~~~~---~~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~~--~~~~l~~~lg--~~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NL-FLTLELFEME-VKNIILVLNKFDLLKKKGA-KI--DIKKMRKELG--VPVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HH-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-CC--CHHHHHHHHS--SCEEECBGGGT
T ss_pred CCcEEEEEecCCcchh---hH-HHHHHHHhcC-CCCEEEEEEChhcCccccc-HH--HHHHHHHHcC--CcEEEEEeCCC
Confidence 8999999999888642 22 3555555541 3999999999998654333 22 2566777777 37999999999
Q ss_pred CCchHHHHHHHHHHcCCC
Q 005908 162 IQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (670)
.|++++++.+.+.+....
T Consensus 151 ~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 151 EGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999876443
No 244
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=7.6e-20 Score=172.10 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=111.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhH----hh--hhchHhh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK--ILSNKEA 494 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~--~~~~~~~ 494 (670)
..+||+|+|++|||||||+|+|.+..+..... ++++.++....+...| ..+.+||++|.+.+ +. +.+...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999987543322 3444445556666663 35778999997432 11 2123456
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 495 ~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
++.+|++++|+|++++.++. ...|+..+...... ++|+++|+||+|+.+.... +++..+. +++++||++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~------~~~~~~~-~~~~~SA~~ 149 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA---KLPITVVRNKADITGETLG------MSEVNGH-ALIRLSART 149 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT---TCCEEEEEECHHHHCCCCE------EEEETTE-EEEECCTTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc---CCCEEEEEECccCCcchhh------hhhccCC-ceEEEeCCC
Confidence 89999999999999998876 45677777665432 5999999999998653211 1111233 589999999
Q ss_pred C-ChHHHHHHHHHHHh
Q 005908 575 K-DLNNVFSRIIWAAE 589 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~ 589 (670)
| |++++|+.|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9 99999999998764
No 245
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=9e-20 Score=184.77 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=117.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh----------hhchH
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNK 492 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----------~~~~~ 492 (670)
.++|+++|.+|||||||+|+|++..+.....++++.+.....+...+ ..+.+||++|...+.. +.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999876544445555556666666653 4567799999765442 21111
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
...+.+|++++|+|+++.++ ...+...+... ++|+++|+||+|+.+.+......+.+++.++++ ++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHH---HHHHHHHHHHH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECCC
T ss_pred HhhcCCCEEEEEecCCChHH---HHHHHHHHHhc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEEc
Confidence 22379999999999998544 34444445444 699999999999876554445567888889976 999999
Q ss_pred ccC-ChHHHHHHHHHHHhCC
Q 005908 573 KSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~~~ 591 (670)
++| |++++++.+.+.+...
T Consensus 151 ~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGGHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 999 9999999998877543
No 246
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=6.6e-20 Score=183.49 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh----------hhchHh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE 493 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~----------~~~~~~ 493 (670)
.+|+++|.+|||||||+|+|++........++++.+.....+...| ..+.+||++|...+.. + ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i--~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQI--AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHH--HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHH--HHH
Confidence 4899999999999999999999875544446555555556666653 4778899999755432 3 445
Q ss_pred hc--ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908 494 AL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 494 ~~--~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (670)
++ ..+|++++|+|+++.+++.. +...+... ++|+++|+||+|+.+.+........+++.++++ ++++|
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~---l~~~l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S 147 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLY---LTSQLFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ 147 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHH---HHHHHTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB
T ss_pred HHhhCCCCEEEEEeeCCCchhHHH---HHHHHHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE
Confidence 56 89999999999998644433 33333332 699999999999976554555567788889975 99999
Q ss_pred cccC-ChHHHHHHHHHH
Q 005908 572 MKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~ 587 (670)
|++| |++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 9999 999999999987
No 247
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=9.4e-19 Score=167.70 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=110.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhhh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL 489 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~~ 489 (670)
....+||+|+|.+|||||||+|+|++..+.... ++.+........... . .+.+||++| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~- 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRL- 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHH-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHH-
Confidence 345689999999999999999999998854433 333333333333333 2 355799999 6666665
Q ss_pred chHhhcccc---cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhC
Q 005908 490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG 563 (670)
Q Consensus 490 ~~~~~~~~a---d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 563 (670)
...+++.+ |++++|+|++++.+.... .+...+... +.|+++|+||+|+.+.... .+...+++...+
T Consensus 95 -~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 95 -VEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp -HHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred -HHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 45555554 999999999887554322 223333333 6999999999999864433 344555555555
Q ss_pred CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 564 IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 564 ~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
..+++++||++| |++++|++|.+.+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 456999999999 99999999998875
No 248
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=1.3e-19 Score=195.51 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=130.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH--------HHh
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EEL 80 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~ 80 (670)
..++|+|+|++|||||||+|+|++..+ ....+++.... ....+..++..+.+|||||+.++....+ .++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV-VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH-HHHEEEETTEEEEECC--------------------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE-EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 568999999999999999999998753 44444432221 2223445678899999999876544333 367
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 81 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+.+|++|+|+|++++.+.... .|++.+. ++|+++|+||+|+...... . ... .+....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECCC
Confidence 889999999999988776653 3666654 4799999999999765443 1 111 111224799999999
Q ss_pred CCCchHHHHHHHHHHcCCCC-----CCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhh
Q 005908 161 MIQVPDVFYYAQKAVLHPTA-----PLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV 223 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~ 223 (670)
|.||+++++.+.+.+..... +.. ..+......++..+|.+.....+......+..++++....
T Consensus 368 g~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~ 436 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQ 436 (462)
T ss_dssp TBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999998865431 111 2233345567888888877766666666777777765543
No 249
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=2.1e-19 Score=181.22 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHh------hhhchHhhcc
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~ 496 (670)
.++|+++|++|||||||+|+|++........+.++..... ..+.+ ...+.+||++|+..+. .+ ...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v--~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKV--ARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHH--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHH--HHHHHh
Confidence 5899999999999999999999976433333333322222 22332 4467789999986654 23 344554
Q ss_pred --cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 497 --~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.+|++++|+|+++.++ ...|..++... ++|+++|+||+|+..........+.+++.++++ ++++||++
T Consensus 78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~SA~~ 147 (272)
T 3b1v_A 78 SQRADSILNVVDATNLER---NLYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATSALK 147 (272)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBTTT
T ss_pred cCCCCEEEEEecCCchHh---HHHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEEccC
Confidence 6999999999988643 44566666553 799999999999876444445678888899986 99999999
Q ss_pred C-ChHHHHHHHHHHHhC
Q 005908 575 K-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~ 590 (670)
| |++++|+.+.+.+..
T Consensus 148 g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TBSHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 9 999999999987643
No 250
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=8.1e-19 Score=179.74 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=111.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCceEEEEEecCChhh--------Hhhhhch
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSN 491 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~-t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~--------~~~~~~~ 491 (670)
+..+|+|+|+||||||||+|+|++..+..++. + ||+.... ..+.. +...+.+|||+|... +... .
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~-~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~--~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR-GILTE--GRRQIVFVDTPGLHKPMDALGEFMDQE--V 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEE-EEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHH--H
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEE-EEEEe--CCcEEEEecCccccchhhHHHHHHHHH--H
Confidence 34679999999999999999999998876544 3 4443222 22322 456788999999754 3333 5
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH-hCCCCcEE
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELL-VEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-LGIEPPIP 569 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~ 569 (670)
..+++.+|++++|+|++++.+.. ..|+ ..+..... +.|+++|+||+|+...... ..+..+. .++.++++
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~----~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 151 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVG----KVPILLVGNKLDAAKYPEE---AMKAYHELLPEAEPRM 151 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT----TSCEEEEEECGGGCSSHHH---HHHHHHHTSTTSEEEE
T ss_pred HHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC----CCCEEEEEECcccCCchHH---HHHHHHHhcCcCcEEE
Confidence 67889999999999999886644 3343 44444321 5899999999999864320 2233333 34446899
Q ss_pred eecccC-ChHHHHHHHHHHHhC
Q 005908 570 VSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+||++| |++++++.+.+.+..
T Consensus 152 iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 152 LSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCB
T ss_pred EeCCCCCCHHHHHHHHHHhccc
Confidence 999999 999999999987753
No 251
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=2.7e-19 Score=193.98 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=132.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-cchh--------hhHHH
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE 79 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~ 79 (670)
..++|+|+|.||||||||+|+|++.+ ++.+++++.... ....+..++..+.+|||||+. ++.. ....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~-~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-EEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 35899999999999999999999886 345455533222 222344457889999999987 5432 24578
Q ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcc
Q 005908 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 159 (670)
++.+|++|+|+|++++.++++.. +++.+ .++|+++|+||+|+... . .. +.+..+ .+...++++|||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~-~~~~~~---~~~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NE-EEIKNK---LGTDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CH-HHHHHH---HTCSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CH-HHHHHH---hcCCCcEEEEECC
Confidence 89999999999999988876643 44444 37899999999999653 2 22 222222 2211369999999
Q ss_pred cCCCchHHHHHHHHHHcCC----CCCCC-ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 005908 160 TMIQVPDVFYYAQKAVLHP----TAPLF-DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEF 221 (670)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~----~~~~~-~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~ 221 (670)
+|.||+++++.+.+.+... ..+.. ..+......++..+|.+............+..++++..
T Consensus 388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a 454 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA 454 (482)
T ss_dssp GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999999875421 12222 23333455677777776655444443334444444433
No 252
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=8.3e-19 Score=172.22 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=109.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC-CCcccceEEEEEEcCCCceEEEEEecCC----------hhhHhhh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKI 488 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g----------~~~~~~~ 488 (670)
...++|+|+|.+|||||||+|+|++..+ ..... +.++.......+... ....+.+||++| ++.+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999999873 23222 222222333333322 446678899999 4444444
Q ss_pred hchHhhccc---ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH---HHHHHHh
Q 005908 489 LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQEL 562 (670)
Q Consensus 489 ~~~~~~~~~---ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~ 562 (670)
...+++. +|++++|+|++++.+ .....++..+... ++|+++|+||+|+.......... .+....+
T Consensus 106 --~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 106 --LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp --HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 3444444 889999999998755 3344555555442 69999999999998744332222 2222332
Q ss_pred ------CCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 563 ------GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 563 ------~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
...+++++||++| |++++++.|.+.+..+
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3346999999999 9999999999988643
No 253
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=2.1e-19 Score=194.57 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=117.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCC----------ccchhhhH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKLN 77 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~ 77 (670)
...+||+++|++|||||||+|+|++..+ ....+++.... ....+..++..+.+|||||+ +.+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee-eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3568999999999999999999999875 33344432221 22334455678999999997 33333322
Q ss_pred -HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeEE
Q 005908 78 -EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV 154 (670)
Q Consensus 78 -~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (670)
.+++.+|++|+|+|++++.++++.. |...+... ++|+++|+||+|+.+.+.. ..++..+.+...+.. ..+++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEE
Confidence 5889999999999999998888763 88877765 8999999999999876554 333444444444432 23799
Q ss_pred EeCcccCCCchHHHHHHHHHHcC
Q 005908 155 ECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
++||++|.||+++|+.+.+.+..
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 254
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=6.5e-19 Score=172.39 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=102.0
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc---
Q 005908 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR--- 82 (670)
Q Consensus 6 ~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--- 82 (670)
+....+.++|+|+|++|||||||+++|++..+....+....... ..+ ....+.+|||||++.+...+..+++.
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--ADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE--TTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE--EEe--eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 34456789999999999999999999999886543222111111 112 56789999999999998888888887
Q ss_pred -CCEEEEEEECC-ChhhHHHHHHHHHHHH-Hh----cCCCCCEEEEEeCCCCCCCCCccch----hhhhhHHHHHhccCC
Q 005908 83 -ADAVVLTYACN-QQSTLSRLSSYWLPEL-RR----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREIE 151 (670)
Q Consensus 83 -ad~ii~v~d~~-~~~s~~~~~~~~~~~l-~~----~~~~~pvilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~ 151 (670)
+|++|+|||++ ++.++..... |+..+ .. ...++|+++|+||+|+.....+... .+.+..++...+ .
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~--~ 158 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK--K 158 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH--H
T ss_pred cCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh--c
Confidence 89999999999 8889888876 54444 32 2358999999999999876543111 233444554444 2
Q ss_pred eEEEeCcccCCC
Q 005908 152 TCVECSATTMIQ 163 (670)
Q Consensus 152 ~~~~~SA~~~~g 163 (670)
+++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 689999998875
No 255
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.77 E-value=1.9e-19 Score=183.15 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=111.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-hhchHhhcccccE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDV 500 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~---~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~ 500 (670)
||+++|.+|||||||++++.++.+.. ...+|++..+.. + . ...++.+||++|+++|.. ...+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988764432 234677665542 2 3 457899999999999863 1015788999999
Q ss_pred EEEEEECCCcccHHHHH---HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc--------ccHHHHHHHHHH----hCCC
Q 005908 501 TIFVYDSSDEYSWKRTK---ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MAVQDSARVTQE----LGIE 565 (670)
Q Consensus 501 vllv~D~s~~~s~~~~~---~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~--------~~~~~~~~~~~~----~~~~ 565 (670)
+|+|||++++ .++... .|+..+....+ +.|+++|+||+|+.... ...++++++++. +++.
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNP----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHHHCT----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhhcCC----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999998 333333 33444443332 69999999999998642 224455566664 4554
Q ss_pred CcEEeecccCChHHHHHHHHHHHh
Q 005908 566 PPIPVSMKSKDLNNVFSRIIWAAE 589 (670)
Q Consensus 566 ~~~~vSA~~g~v~~l~~~l~~~~~ 589 (670)
+++|||++.||.++|..+++.+.
T Consensus 151 -f~eTSAkd~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 151 -FYLTSIFDHSIYEAFSRIVQKLI 173 (331)
T ss_dssp -EECCCSSSSHHHHHHHHHHTTSS
T ss_pred -EEEeccCCCcHHHHHHHHHHHHH
Confidence 99999997799999999987654
No 256
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=2.2e-18 Score=174.59 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=120.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHhhc-
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL- 495 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~- 495 (670)
.++|+++|++|||||||+|+|++..+.....++++.+.....+...+ ..+.+||++|...+.. + ...++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELI--ARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHH--HHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHH--HHHhhh
Confidence 48999999999999999999999877544446666555555566553 4578899999765544 3 33444
Q ss_pred -ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeeccc
Q 005908 496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (670)
Q Consensus 496 -~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 574 (670)
.++|++++|+|+++. .....+...+.... ..|+++|+||+|+.+.+........+++.++++ ++++||++
T Consensus 79 ~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~Sa~~ 149 (271)
T 3k53_A 79 DGNADVIVDIVDSTCL---MRNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTNAKK 149 (271)
T ss_dssp TTCCSEEEEEEEGGGH---HHHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECBGGG
T ss_pred ccCCcEEEEEecCCcc---hhhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEEeCC
Confidence 789999999999885 33445555555541 299999999999876444444578888899976 99999999
Q ss_pred C-ChHHHHHHHHHHHhCCCC
Q 005908 575 K-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~~~ 593 (670)
| |++++++.+.+.+.....
T Consensus 150 g~gi~~l~~~i~~~~~~~~~ 169 (271)
T 3k53_A 150 GEGVEELKRMIALMAEGKVT 169 (271)
T ss_dssp TBTHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 9 999999999999875443
No 257
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.7e-18 Score=188.52 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=117.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCCCCCeEeCCcccCCceeEEEEeCCC----------Cccchhhh
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKL 76 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~ 76 (670)
....+||+++|++|||||||+|+|++.. +....+++.... ....+..++..+.+||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT-TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE-EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4567999999999999999999999876 233344422211 2223445567899999999 55555544
Q ss_pred H-HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc--CCeE
Q 005908 77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (670)
Q Consensus 77 ~-~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (670)
. .+++.+|++|+|+|+++..+... ..|...+... ++|+|+|+||+|+.+.+.. ..++..+.+...+.. ..++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence 4 47899999999999988655443 3477777765 7999999999999876655 344443444443321 2479
Q ss_pred EEeCcccCCCchHHHHHHHHHHcCC
Q 005908 154 VECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 154 ~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
++|||++|.||+++|+.+.+.+...
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999877543
No 258
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=1.2e-18 Score=188.87 Aligned_cols=183 Identities=17% Similarity=0.212 Sum_probs=126.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChh-hHhh------hhchH
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNK 492 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-~~~~------~~~~~ 492 (670)
+..++|+|+|.||||||||+|+|++.++..+.+ ++++.+.....+.++| ..+.+|||+|.. .+.. +.++.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHH
Confidence 346899999999999999999999987654433 4333344445566653 567889999986 4332 12256
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEee
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVS 571 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS 571 (670)
.+++.+|++|+|+|++++.+++... ++..+ . ++|+++|+||+|+.+. ...++..++ .+. .+++++|
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~----~~piivV~NK~DL~~~-~~~~~~~~~---~~~~~~~i~iS 385 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRK-ILERI----K----NKRYLVVINKVDVVEK-INEEEIKNK---LGTDRHMVKIS 385 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----T----TSSEEEEEEECSSCCC-CCHHHHHHH---HTCSTTEEEEE
T ss_pred HHhhcccEEEEEecCCCCCCHHHHH-HHHHh----c----CCCEEEEEECcccccc-cCHHHHHHH---hcCCCcEEEEE
Confidence 7889999999999999998876543 33322 1 5899999999999763 223333333 232 3599999
Q ss_pred cccC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhcc
Q 005908 572 MKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSG 620 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (670)
|++| |++++++.|.+.+..... ........+.++.++++++..++..
T Consensus 386 Aktg~Gi~eL~~~l~~~~~~~~~--~~~~~~~~~~R~~~~l~~a~~~L~~ 433 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQEIFE--RGSDSLITNLRQKQLLENVKGHLED 433 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTHHHHH--HHTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhhcC--CCCcceEhhHHHHHHHHHHHHHHHH
Confidence 9999 999999999997542100 0111233456777777777776654
No 259
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.76 E-value=1.9e-18 Score=192.00 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=120.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEE------EEc--CCCceEEEEEecCChhhHhhhhch
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN 491 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~------vd~--~g~~~~~~i~d~~g~~~~~~~~~~ 491 (670)
....+||+++|.+|||||||+|+|++..+...+.+|++..+.... +.+ .+....+.+||++|++.+..+ .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~--~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS--H 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--C
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--H
Confidence 456799999999999999999999999888777778776665442 222 234678999999999888887 7
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-cHHHHHHHHHHhCCCCcEEe
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPV 570 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v 570 (670)
..+++.+|++|+|+|+++. +....|+..+..+.. +.|+++|+||+|+.+... ..+..++++...+.+ ++++
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~v 187 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRI 187 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEEC
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEE
Confidence 7888999999999999875 456788888887754 589999999999987544 366677777777765 9999
Q ss_pred ecccC-ChHHHHHHHHHHHhCCC
Q 005908 571 SMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 571 SA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
||++| |++++++.+.+.+....
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTT
T ss_pred ecCcccCHHHHHHHHHHHHhccc
Confidence 99999 99999999999987644
No 260
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=1.9e-18 Score=179.29 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCcc----chhhhHHH---hccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a 83 (670)
.+|+|+|.+|||||||+|+|++.+.. .+++.+....... .+... ...+.+|||||+.+ +..+...+ ++.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999987632 2233211111111 12222 36899999999643 33344444 4459
Q ss_pred CEEEEEEECCC---hhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 84 d~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
|++|+|+|+++ +.+++.+. .|..++..+. .++|+++|+||+|+... .+..+.+.+.+....++++||
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred cEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 99999999998 78888887 4888888764 37999999999998642 233456666665324699999
Q ss_pred cccCCCchHHHHHHHHHHcCCCC-CCCc
Q 005908 158 ATTMIQVPDVFYYAQKAVLHPTA-PLFD 184 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~~~~~-~~~~ 184 (670)
|+++.||+++++.+.+.+..... +.|+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 99999999999999999875544 4443
No 261
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=2e-18 Score=186.29 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhh------hhchHh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKE 493 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~------~~~~~~ 493 (670)
+..++|+|+|++|||||||+|+|++.++..+.. ++++.+.....+.++| ..+.+|||+|...+.. +.++..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 456899999999999999999999987665443 4444333333444553 5677899999644332 223456
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
+++.+|++++|+|++++.+... ..++..+. ..|+++|+||+|+....... ..+++. ...+++++||+
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~~~~~-~~~~~~---~~~~~i~iSAk 366 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEKQLIT-SLEYPE---NITQIVHTAAA 366 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCGGGST-TCCCCT---TCCCEEEEBTT
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcchhhH-HHHHhc---cCCcEEEEECC
Confidence 7899999999999999877554 44444442 47999999999998743321 111111 23469999999
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCCCCcccccHHHHHHHhhhhhhhhc
Q 005908 574 SK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVS 619 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (670)
+| |++++++.|.+.+.......++ .....+.+|.++++++..++.
T Consensus 367 tg~Gi~eL~~~i~~~~~~~~~~~~~-~~~~~~~R~~~~L~~a~~~L~ 412 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTGKVQAAD-MDLAINQRQAAALTQAKMSLE 412 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTSSSSSCC-SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCcc-cceechHHHHHHHHHHHHHHH
Confidence 99 9999999999998764422222 223456677777777776654
No 262
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=6.8e-19 Score=187.46 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCC-eEeCCcccCCceeEEEEeCCCCccchhh----
Q 005908 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGK---- 75 (670)
Q Consensus 3 ~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---- 75 (670)
+++.......++|+|+|++|||||||+|+|++..+. ...+++... ......+. ....+.+|||||+.++...
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~ 103 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLR 103 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCC
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHH
Confidence 344455667899999999999999999999998863 223332211 11222222 2238999999999876543
Q ss_pred ---hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCe
Q 005908 76 ---LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (670)
Q Consensus 76 ---~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (670)
...+++.+|++|+|+|+.... . ...|...++.. ++|+++|+||+|+...... +..+.+.+.++ .+
T Consensus 104 ~~~~~~~l~~aD~vllVvD~~~~~-~---~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g--~~ 171 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDSAPTP-Y---EDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE--AK 171 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSSSCCH-H---HHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT--CC
T ss_pred HHHHHHHHhcCCEEEEEEeCCChH-H---HHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC--CC
Confidence 456889999999999983222 2 23588888877 8999999999999876443 33344444554 37
Q ss_pred EEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 153 CVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 153 ~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
++++||++|.|++++|+.+.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999988544
No 263
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=1.6e-17 Score=179.95 Aligned_cols=152 Identities=21% Similarity=0.285 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhh---------HhhhhchHh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG---------VKKILSNKE 493 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~---------~~~~~~~~~ 493 (670)
.+|+|+|+||||||||+|+|++.....+.+ ++++.+.....+.+.| ..+.+|||+|.+. +... +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~--~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEV--TLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHH--HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHH--HHH
Confidence 489999999999999999999988654433 3333334445556653 4578899999653 2223 567
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH-HHHHHHhCCCCcEEeec
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSM 572 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSA 572 (670)
++++||++++|+|++++.+..+ ..+...+... ++|+++|+||+|+.+. ..... .++. .+++.+++++||
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~-~lg~~~~~~iSA 147 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKED-ESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELY-SLGFGEPIPVSA 147 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHG-GGSSCSCEECBT
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHH-hcCCCCEEEEec
Confidence 8899999999999998766543 1222222222 6999999999998642 11222 3443 467756899999
Q ss_pred ccC-ChHHHHHHHHHHHh
Q 005908 573 KSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~ 589 (670)
++| |++++++.+.+.+.
T Consensus 148 ~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLE 165 (439)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcc
Confidence 999 99999999998875
No 264
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=2.3e-17 Score=176.62 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=117.0
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CC----------CCCCeEeCC---ccc-----CCceeEEEEeC
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP----------VHAPTRLPP---DFY-----PDRVPVTIIDT 66 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~--~~----------~~~~~~~~~---~~~-----~~~~~~~i~Dt 66 (670)
...++.++|+++|++|+|||||+|+|++....... .. ......... ... .....+.+|||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34567899999999999999999999985432210 00 000000000 001 11278999999
Q ss_pred CCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH
Q 005908 67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ 146 (670)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 146 (670)
||++++...+...+..+|++|+|+|+++..++....+ |+..++... .+|+++|+||+|+.+........+.+..+...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876666553 666666552 36999999999997643210111122222222
Q ss_pred hc-cCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 147 FR-EIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 147 ~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
++ ...+++++||++|.||+++++.+.+.+..+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 11 1237999999999999999999998775443
No 265
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=172.58 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hhh-hchHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~a 498 (670)
.+|+|+|.+|||||||+|+|++........+.++.......+.++ ....+.+||++|..+. ..+ ......+..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 479999999999999999999876543333322222334456666 3457888999996432 112 1123345669
Q ss_pred cEEEEEEECCC---cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCC-CCcEEeeccc
Q 005908 499 DVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS 574 (670)
Q Consensus 499 d~vllv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSA~~ 574 (670)
|++|+|+|+++ +.+++.+..|..++..+.... .++|+++|+||+|+... .+..+++++.+.. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCC---HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 788999999999998865321 16999999999999863 2456667777763 3599999999
Q ss_pred C-ChHHHHHHHHHHHhCCC
Q 005908 575 K-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 575 g-~v~~l~~~l~~~~~~~~ 592 (670)
+ |++++++.|.+.+....
T Consensus 314 g~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCC
T ss_pred CcCHHHHHHHHHHHHhhCc
Confidence 9 99999999999987544
No 266
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=5e-18 Score=170.96 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCC-CCCeEeCCcccCCceeEEEEeCCCCccchhh----------
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK---------- 75 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 75 (670)
...+.++|+|+|++|||||||+|+|++.. +.....+. .+.......+...+..+.||||||+.++...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34567999999999999999999999887 44332221 1111122234456788999999998754322
Q ss_pred -hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEe-CCCCCCCCCccchh-------hhhhHH
Q 005908 76 -LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSLE-------EVMGPI 143 (670)
Q Consensus 76 -~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~N-K~Dl~~~~~~~~~~-------~~~~~~ 143 (670)
...+++.+|++|+|+|+++..... ..+...+.+.. ...|+++|+| |+|+.... . .. ..+..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~--~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-L--MDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-H--HHHHHHCCCHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-H--HHHHHhcchHHHHHH
Confidence 224778999999999998633222 22334443321 1356666665 99997432 1 11 223345
Q ss_pred HHHhccCCe-E--EEeCcccCCCchHHHHHHHHHHcCCCCCCCcc
Q 005908 144 MQQFREIET-C--VECSATTMIQVPDVFYYAQKAVLHPTAPLFDH 185 (670)
Q Consensus 144 ~~~~~~~~~-~--~~~SA~~~~gi~~l~~~i~~~~~~~~~~~~~~ 185 (670)
...++.... + +++||++|.|++++|+.+.+.+.......|..
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~ 216 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTN 216 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCH
Confidence 555553211 2 78999999999999999999887555344543
No 267
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=1e-17 Score=171.78 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=109.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCCCCCeEeCCcccCCceeEEEEeCCCCc-c--------chhhhHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-E--------NKGKLNE 78 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~~ 78 (670)
.+..+|+|+|++|||||||+|+|++..+. ...+++... .....+..++..+.+|||||+. . +......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~-~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH-RIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS-CEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee-eEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 45568999999999999999999998753 223322211 1222344567889999999987 2 2223346
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCc
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 158 (670)
+++.+|++++|+|+++ -+ .....+...+... +.|+++|+||+|+..... ...+.+..+...++. ..++++||
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~~-~~~i~iSA 156 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNF-LDIVPISA 156 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCC-SEEEECCT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcCc-CceEEEEC
Confidence 6788999999999877 22 2222344555543 799999999999975211 233444555554542 36999999
Q ss_pred ccCCCchHHHHHHHHHHc
Q 005908 159 TTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~ 176 (670)
++|.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
No 268
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=1e-18 Score=190.73 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=115.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCccc-CCceeEEEEeCCCCccchhhhHHHhccCCEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 87 (670)
++..+|+++|++|+|||||+++|.+..+... .+++..... ...+. ..+..+.||||||++.|..++..+++.+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~-~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIG-AFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTT-SCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEe-EEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3568999999999999999999998765443 222211111 11222 24568999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHH---HHHhccCCeEEEeCcccCCCc
Q 005908 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI---MQQFREIETCVECSATTMIQV 164 (670)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~SA~~~~gi 164 (670)
+|+|+++....+... ++..+... ++|+++|+||+|+.+.+.. .....+..+ ...++...+++++||++|.||
T Consensus 81 LVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999876665543 44555544 7899999999999764332 112221111 112222237999999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++++.+...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999988764
No 269
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.73 E-value=2.5e-17 Score=173.40 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=112.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccch---------hhhHHH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEE 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~ 79 (670)
...++|+++|.+|||||||+|+|++..+... .+.+..... ...+...+..+.+|||||+.... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4678999999999999999999998774222 332221211 11223346789999999985432 112234
Q ss_pred hccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeC
Q 005908 80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (670)
Q Consensus 80 ~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (670)
...+|++++|+|+++.. +++... .|+..+.....++|+++|+||+|+.....+ +....++...+ .++++||
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence 45799999999998876 667665 488888765458999999999999754221 22333344443 3799999
Q ss_pred cccCCCchHHHHHHHHHHc
Q 005908 158 ATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 158 A~~~~gi~~l~~~i~~~~~ 176 (670)
|++|+||+++++++.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 270
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.72 E-value=4.4e-17 Score=167.14 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCceEEEEEecCChh-hHhh------hhchHh
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNKE 493 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~-t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-~~~~------~~~~~~ 493 (670)
..+|+|+|++|||||||+|+|++..+..++. + |+... ....+.. +...+.++||+|.. .... ......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4589999999999999999999998765543 2 43322 2223333 34678889999986 2211 111467
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeec
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
+++.+|++++|+|+++ .+ ....++...... . +.|+++|+||+|+.. .....+..+++.+.+++.+++++||
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~---~--~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE---G--KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA 156 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS---S--SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh---c--CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEEC
Confidence 7899999999999987 33 223333332221 1 699999999999987 2333455666666677656899999
Q ss_pred ccC-ChHHHHHHHHHHHhC
Q 005908 573 KSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 573 ~~g-~v~~l~~~l~~~~~~ 590 (670)
++| |++++++.+.+.+..
T Consensus 157 ~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTTHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhCCc
Confidence 999 999999999987754
No 271
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.71 E-value=2.1e-17 Score=164.73 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=109.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCC-CCCeEeCCcccCCceeEEEEeCCCCc--------cchhhhHH
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV-HAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNE 78 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~ 78 (670)
..+.++|+|+|.+|||||||+|+|++..+... .++. .+.......+...+..+.||||||.. ++...+..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 45689999999999999999999999885443 2221 11111223344567889999999973 33333333
Q ss_pred Hh----ccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-C---CCCCEEEEEeCCCCCCCCCccch----hhhhhHHHHH
Q 005908 79 EL----KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQ 146 (670)
Q Consensus 79 ~~----~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~Dl~~~~~~~~~----~~~~~~~~~~ 146 (670)
++ +.+|++|+|+|+++....+ ..+++.+... . .+.|+|||+||+|+......... .+.+..+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 9999999999998532222 2244444432 1 26899999999999754211001 1335677777
Q ss_pred hccCCeEEEeCccc-----CCCchHHHHHHHHHHcCCCCCCCcc
Q 005908 147 FREIETCVECSATT-----MIQVPDVFYYAQKAVLHPTAPLFDH 185 (670)
Q Consensus 147 ~~~~~~~~~~SA~~-----~~gi~~l~~~i~~~~~~~~~~~~~~ 185 (670)
++. .++.+++.. +.||.+|++.+.+.+.......|..
T Consensus 175 ~g~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~ 216 (247)
T 3lxw_A 175 CGG--RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSN 216 (247)
T ss_dssp TTT--CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred cCC--eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 775 355555443 6899999999988887655555544
No 272
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=3.9e-17 Score=178.09 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=111.9
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCC----C---CCC-CCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHH
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES----V---PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (670)
...++.++|+++|++++|||||+++|++.. . ... .+++. .......+...+..+.+|||||++++...+..
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGIT-IDIGFSAFKLENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccE-EecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence 345678999999999999999999999876 1 111 11111 00011123335688999999999998888889
Q ss_pred HhccCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-cc-CCeE
Q 005908 79 ELKRADAVVLTYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETC 153 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 153 (670)
.+..+|++|+|+|+++. ++.+. +..++.. ++|+++|+||+|+.+........+.+..+.... +. ..++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~-----l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEH-----MLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHH-----HHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHH-----HHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 99999999999999883 44433 3344444 789999999999975321101223333444333 10 2479
Q ss_pred EEeCcccCCCchHHHHHHHHHHc
Q 005908 154 VECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 154 ~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+++||++|.||+++++.+.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998764
No 273
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.70 E-value=3.3e-16 Score=164.92 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=116.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhh-----h--hchHh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I--LSNKE 493 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~-----~--~~~~~ 493 (670)
...++|+++|.+|||||||+|+|.+........+.++.......+... ...+.+||++|...... + .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467899999999999999999999987543322333333333444333 45678899999633210 0 00223
Q ss_pred hcccccEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908 494 ALASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (670)
....+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+..... .+...++++..+.+ ++++|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~-~~~iS 316 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLN-PIKIS 316 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCC-CEECB
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHH-HHHHHHHHHhcCCC-eEEEe
Confidence 445699999999999876 77888888888877543 589999999999987432 23455556666654 99999
Q ss_pred cccC-ChHHHHHHHHHHHh
Q 005908 572 MKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 572 A~~g-~v~~l~~~l~~~~~ 589 (670)
|++| |++++++++.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999 99999999999875
No 274
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.70 E-value=6.5e-18 Score=179.92 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=115.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhh-----hchHh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKE 493 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~-----~~~~~ 493 (670)
....++|+|+|.+|+|||||+|+|++..+...+. ++++.+.....+... +...+.+|||+|.+.+..+ .++..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3456999999999999999999999988754433 333334444556666 3457889999998765432 22466
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
++..+|++|+|+|++.. .....|+..+... ++|+++|+||+|+...... +..+++++.++++ ++++||+
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~-v~~vSAk 178 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK-VLLVSAL 178 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC-CCCCSSC
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC-EEEEECC
Confidence 88999999999999333 4456777777765 6999999999999875443 5566666667764 9999999
Q ss_pred cC-ChHHHHHHHHHHHhCC
Q 005908 574 SK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 574 ~g-~v~~l~~~l~~~~~~~ 591 (670)
+| |++++|+.|.+.+...
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 99 9999999999998554
No 275
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2e-17 Score=161.78 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=102.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
...++|+|+|++|||||||+++|.+..+... +.++++..+ ....+.+||++|++.+... ...+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH--HHHHHHh
Confidence 4569999999999999999999999876542 223333322 2345678999999888776 5666666
Q ss_pred ----ccEEEEEEECC-CcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCccc-------HHHHHHHHHHhCC
Q 005908 498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQELGI 564 (670)
Q Consensus 498 ----ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~ 564 (670)
+|++|+|+|++ ++.++.....|+..+...... ...++|+++|+||+|+...... .+++..++...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888999999998887654211 0016999999999999875442 3445666666665
Q ss_pred CCcEEeecccC-C
Q 005908 565 EPPIPVSMKSK-D 576 (670)
Q Consensus 565 ~~~~~vSA~~g-~ 576 (670)
. ++++||++| +
T Consensus 159 ~-~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 S-LNEVERKINEE 170 (218)
T ss_dssp H-HHC--------
T ss_pred c-ccccccccccc
Confidence 4 999999998 5
No 276
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=2.7e-16 Score=168.24 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CCcc--------cceE----EEEEEcC---CCceEEEEEecCC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---PTTG--------EQYA----VNVVDQP---GGNKKTLILQEIP 481 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---~t~~--------~~~~----~~~vd~~---g~~~~~~i~d~~g 481 (670)
.+..++|+++|.+|+|||||+|+|++........ .+.. ..+. ....... +....+.+||++|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3567999999999999999999999854332110 0000 0000 0000000 0125778899999
Q ss_pred hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH
Q 005908 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 561 (670)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 561 (670)
++.+... +...+..+|++++|+|++++.++.+..+++..+.... ..|+++|+||+|+.+.....+..+++.+.
T Consensus 85 h~~~~~~--~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 85 HEVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp CGGGHHH--HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHH--HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9888776 7888899999999999999876777788877666552 35899999999998754333333333333
Q ss_pred h---C--CCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 562 L---G--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 562 ~---~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
+ + ..+++++||++| |++++++.|.+.+..+.
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 2 2 236999999999 99999999999876544
No 277
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=160.02 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCC-CCCCeEeCCcccCCceeEEEEeCCCCcc-----------chhh
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLE-----------NKGK 75 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 75 (670)
....+||+|+|++|||||||+|+|++..+... .++ ..+.......+...+..+.||||||..+ +...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999886443 221 1111112223445677899999999653 2233
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCCCCCCccc----hhhhhhHHHHHhc
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFR 148 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~ 148 (670)
+..+++++|++|+|+|+++....+ . .|+..+... ....|+++|+||+|+.....+.. ..+.+..+...++
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~-~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEE-H--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHH-H--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHH-H--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 335567889999999987654422 1 234444221 12469999999999876543310 1235677778887
Q ss_pred cCCeEEEeCccc-----CCCchHHHHHHHHHHcCCCC
Q 005908 149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHPTA 180 (670)
Q Consensus 149 ~~~~~~~~SA~~-----~~gi~~l~~~i~~~~~~~~~ 180 (670)
. .++.+++.. +.++.++++.+.+.+.....
T Consensus 183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g 217 (239)
T 3lxx_A 183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE 217 (239)
T ss_dssp S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 5 466666653 37899999988887754433
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.1e-17 Score=153.74 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=88.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhcc----CC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD 84 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad 84 (670)
..+.++|+++|++|||||||+++|++..+....++...... .....+.+.+|||||+..+...+..+++. +|
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 45679999999999999999999999876542211111111 12256789999999999887777777766 89
Q ss_pred EEEEEEECC-ChhhHHHHHHHHHHHH-Hh----cCCCCCEEEEEeCCCCCCCCCc
Q 005908 85 AVVLTYACN-QQSTLSRLSSYWLPEL-RR----LEIKVPIIVAGCKLDLRGDHNA 133 (670)
Q Consensus 85 ~ii~v~d~~-~~~s~~~~~~~~~~~l-~~----~~~~~pvilv~NK~Dl~~~~~~ 133 (670)
++|+|||++ +..++..+.. |+..+ .. ..+++|+++|+||+|+......
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 999999999 8899988875 54444 32 2358999999999999876543
No 279
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.68 E-value=1.2e-16 Score=167.54 Aligned_cols=163 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred cceE-EEEEcCCCCCHHHHHHHHHcCCCCC-CCCC-CCCCeEeCCcccCCceeEEEEeCCCCcc---------chhhhHH
Q 005908 11 TGVR-VVVVGDRGTGKSSLIAAAATESVPE-KVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLE---------NKGKLNE 78 (670)
Q Consensus 11 ~~~k-I~ivG~~~vGKSSLi~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~ 78 (670)
..++ |+|+|.+|||||||+|+|++..+.. +.+. +.+.+.. .+...+..+.+|||+|+.. +.. ...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~--~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~ 253 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY--AIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLS 253 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--EEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--EEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHH
Confidence 3566 9999999999999999999887522 2222 2112222 2333447899999999632 111 223
Q ss_pred HhccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHh-ccCCeEE
Q 005908 79 ELKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCV 154 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 154 (670)
.+..+|++++|+|++++. ..+.+. .|...++... .++|+++|+||+|+...... ........+...+ ....+++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEE
Confidence 578999999999998876 455544 4666666543 47899999999998754211 1111222333444 2112589
Q ss_pred EeCcccCCCchHHHHHHHHHHcCC
Q 005908 155 ECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
++||++|.|++++++.+.+.+..+
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhccc
Confidence 999999999999999998876543
No 280
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.68 E-value=1.8e-16 Score=170.97 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCC------------------------------CCCCCCeEeCCcc
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV------------------------------PPVHAPTRLPPDF 54 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~ 54 (670)
...++.++|+++|++|+|||||+++|++.. +.... +++ +.......+
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi-Tid~~~~~~ 90 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK-TVEVGRAYF 90 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc-eEEEeEEEE
Confidence 345678999999999999999999996542 11100 111 011122234
Q ss_pred cCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCC-EEEEEeCCCC
Q 005908 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDL 127 (670)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~p-vilv~NK~Dl 127 (670)
...+..+.||||||+++|...+..+++.+|++|+|+|+++... ++ ... +.+..+... ++| +|+|+||+|+
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~-e~l~~~~~~--~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR-EHAMLAKTA--GVKHLIVLINKMDD 167 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHH-HHHHHHHHc--CCCeEEEEeecCCC
Confidence 4567799999999999999999999999999999999987632 11 111 133334444 667 9999999999
Q ss_pred CCCCC----ccchhhhhhHHHHHhcc----CCeEEEeCcccCCCchHHHH
Q 005908 128 RGDHN----ATSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 128 ~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~ 169 (670)
..... .....+.+..+.+.++. ..+++++||++|.|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 64211 00112333444444442 23799999999999999655
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=2.1e-17 Score=169.55 Aligned_cols=132 Identities=10% Similarity=0.045 Sum_probs=99.6
Q ss_pred HHHHHHHcCCCC-CCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHH
Q 005908 27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY 104 (670)
Q Consensus 27 SLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~ 104 (670)
+|+++++.+.|. ..+.++.+.... ..+..++ ++.+||| ++++..+++.+++++|++|+|||++++. +++.+. +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 688899888887 565444444331 2222233 7999999 8899999999999999999999999987 677776 5
Q ss_pred HHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 105 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
|+..++.. ++|++||+||+|+.+.+.+ +....++..++...++++|||++|.||+++|.
T Consensus 107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHH
Confidence 88888764 8999999999999754321 22445555554213799999999999998886
No 282
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=1.4e-17 Score=180.18 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=108.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEE
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 88 (670)
++..+|+++|++++|||||+++|.+..+.... +++. .......+..++..+.||||||++.|..++...+..+|++|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT-~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT-QHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC-CCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee-EeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 46689999999999999999999876544332 2211 111112333456789999999999999988889999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhh---hHHHHHhccCCeEEEeCcccCC
Q 005908 89 TYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMI 162 (670)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~~~ 162 (670)
|+|+++. ++.+. +..++.. ++|+++++||+|+...+.. .....+ ..+...++...+++++||++|.
T Consensus 81 VVda~~g~~~qT~e~-----l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-----IQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEETTTBSCTTTHHH-----HHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EeecccCccHHHHHH-----HHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999884 44433 2334444 7899999999999753211 111110 1111223323479999999999
Q ss_pred CchHHHHHHHH
Q 005908 163 QVPDVFYYAQK 173 (670)
Q Consensus 163 gi~~l~~~i~~ 173 (670)
||+++++.+..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999998764
No 283
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.67 E-value=7.7e-16 Score=161.42 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=108.7
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh------HhhhhchHhhc
Q 005908 423 VFR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEAL 495 (670)
Q Consensus 423 ~~k-I~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~------~~~~~~~~~~~ 495 (670)
.++ |+|+|.+|||||||+|+|.+..+.....+.++.+.....+.++| ..+.+||++|... .+.+..+...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHH
Confidence 344 99999999999999999999876333223223234445566674 5677899999511 12222245578
Q ss_pred ccccEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHHHHHh-C-CCCcEE
Q 005908 496 ASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-G-IEPPIP 569 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~-~-~~~~~~ 569 (670)
..+|++++|+|++++. +......|...+...... +.|+++|+||+|+...... ...+..+++.+ . -+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~---~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS---GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC---SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC---CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999876 455555555555443222 5899999999999764311 22333445555 2 125899
Q ss_pred eecccC-ChHHHHHHHHHHHhCCC
Q 005908 570 VSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
+||++| |++++++.|.+.+..+.
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EECCCCcCHHHHHHHHHHHhcccC
Confidence 999999 99999999999876443
No 284
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=1.1e-16 Score=175.66 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=86.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------C------CCCCCCCeEeCCcccCCceeEEEEeCC
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----------------K------VPPVHAPTRLPPDFYPDRVPVTIIDTS 67 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 67 (670)
+..+|+|+|++|||||||+++|+...-.. + ..++. .......+...++.++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence 45789999999999999999997221100 0 00100 001112344567899999999
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
|+.+|...+..+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999887777654 55566655 7999999999999654
No 285
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=5.5e-16 Score=166.16 Aligned_cols=165 Identities=19% Similarity=0.131 Sum_probs=102.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCC-CCCCeEeCCc---------c------c--C----CceeE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPP-VHAPTRLPPD---------F------Y--P----DRVPV 61 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~-~~~~~~~~~~---------~------~--~----~~~~~ 61 (670)
..++.++|+++|+.++|||||+++|++.. +... .++ +......... + . . ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998643 2222 121 1111100000 0 1 1 12789
Q ss_pred EEEeCCCCccchhhhHHHhccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh
Q 005908 62 TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (670)
Q Consensus 62 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~ 137 (670)
.+|||||+++|...+...+..+|++|+|+|+++. ++.+.+ ..++.. ...|+++|+||+|+.+........
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHHHHHHH
Confidence 9999999988877777778888999999999864 344433 233333 135899999999998754321122
Q ss_pred hhhhHHHHHhc-cCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 138 EVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+.+..+.+.+. ...+++++||++|.||+++++.+.+.+..+
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 33344444321 124799999999999999999999877644
No 286
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=2.2e-16 Score=172.87 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=101.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCC------------------------C------CCCCCCCeEeCCcccCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE------------------------K------VPPVHAPTRLPPDFYPD 57 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~ 57 (670)
++.+||+++|++|+|||||+++|++.. +.. + .+++.. ......+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi-~~~~~~~~~~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV-SICTSHFSTH 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSC-CCCEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcce-EeeeEEEecC
Confidence 456999999999999999999998652 110 0 011100 0011234456
Q ss_pred ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (670)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 132 (670)
+..+.||||||+++|...+..+++.+|++|+|+|+++..++.. ........+... ...|+|+|+||+|+.+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence 7899999999999999999999999999999999998754322 111233333333 2357999999999976433
Q ss_pred ccchhh---hhhHHHHHhcc---CCeEEEeCcccCCCchHHH
Q 005908 133 ATSLEE---VMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (670)
Q Consensus 133 ~~~~~~---~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~ 168 (670)
. ..++ .+..+...++. ..+++++||++|.||.++.
T Consensus 189 ~-~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 189 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp H-HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred H-HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 2 2222 22333333332 2379999999999998753
No 287
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.66 E-value=4.2e-16 Score=160.20 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC----CC----------------------CeEe--C--C-----c
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL--P--P-----D 53 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~----~~----------------------~~~~--~--~-----~ 53 (670)
....++|+|+|++|||||||+|+|++..+.+...+. .. .+.. . . .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998874221100 00 0000 0 0 0
Q ss_pred c-----------------cCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEE-EEEECCChhhHHHHH
Q 005908 54 F-----------------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLS 102 (670)
Q Consensus 54 ~-----------------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~ 102 (670)
+ ......+.||||||+.. +...+..+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0 01136899999999742 3345667888888776 799988765444432
Q ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhc----cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 103 SYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 103 ~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
.|...+... +.|+++|+||+|+.+.... ..+. +...+. ...+++++||++|.|++++++.+.+..
T Consensus 183 -~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 -KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp -HHHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHH---HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred -HHHHHhCCC--CCeEEEEEEccccCCCCch--HHHH---HhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 255555543 7899999999999765432 1111 111111 112688999999999999999988753
No 288
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.66 E-value=1.9e-16 Score=169.72 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=113.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcC--------CCCCC----------CCCCCCCeEeCCcccCCceeEEEEeCCCC
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK----------VPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 69 (670)
..++.++|+++|++|+|||||+++|++. .+... ..++... .....+...+..+.+|||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN-TAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS-CEEEEEECSSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE-eeeeEeccCCeEEEEEECCCh
Confidence 3456799999999999999999999873 22110 0010000 012234456788999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHh
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF 147 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 147 (670)
++|...+..+++.+|++|+|+|+++....+. . .|+..++.. ++| +++|+||+|+...... ....+.+..+...+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~-~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT-R-EHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-H-HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9998888899999999999999988765443 2 366666665 788 8999999999752111 01122345555555
Q ss_pred cc---CCeEEEeCcccCCC------------------chHHHHHHHHHHcC
Q 005908 148 RE---IETCVECSATTMIQ------------------VPDVFYYAQKAVLH 177 (670)
Q Consensus 148 ~~---~~~~~~~SA~~~~g------------------i~~l~~~i~~~~~~ 177 (670)
+. ..+++++||++|.| +.++++.+.+.+..
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 42 24799999999987 66777766665543
No 289
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=1.5e-15 Score=164.09 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC----------CCCCCCC-e-----------------Ee---CCccc
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAP-T-----------------RL---PPDFY 55 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~----------~~~~~~~-~-----------------~~---~~~~~ 55 (670)
.++.++|+++|++|+|||||+++|++.. +... .+++.+. . ++ ...+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 4556999999999999999999998654 1111 1111100 0 00 01133
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CEEEEEeCCCCCCCCCc-
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA- 133 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~~~~~- 133 (670)
..+..+.+|||||+++|...+..+++.+|++|+|+|+++....+.. .++..+... +. |+|+|+||+|+.+....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 4567899999999999988888999999999999999886543332 255555554 44 69999999999763211
Q ss_pred -cchhhhhhHHHHHhc---cCCeEEEeCcccCCCchHHHH
Q 005908 134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 134 -~~~~~~~~~~~~~~~---~~~~~~~~SA~~~~gi~~l~~ 169 (670)
....+.+..+.+.++ ...+++++||++|.||+++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 012233445555554 113799999999999998543
No 290
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.64 E-value=8.5e-16 Score=170.37 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=111.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCC-----CCCCC------CCCeE----eCCcc---cCCceeEEEEeCCCCc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSL 70 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~ 70 (670)
+-.+|+|+|+.++|||||+++|+... +.. ..... .+.+. ....+ +...+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35689999999999999999998632 111 00000 00000 11111 2345889999999999
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc-
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE- 149 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~- 149 (670)
+|...+..+++.+|++|+|+|+++..+.+.... |...+. . ++|+++|+||+|+...+ ..+....+...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-M--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-C--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCC
Confidence 999999999999999999999999877776653 554443 3 78999999999997643 23444556665542
Q ss_pred CCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 150 IETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 150 ~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
..+++++||++|.||+++++.+.+.+..+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 124899999999999999999999887654
No 291
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=4e-15 Score=147.62 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=106.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCceEEEEEecCCh-----------hhHh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPE-----------EGVK 486 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~-----------~~~~ 486 (670)
....++|+|+|++|||||||+|+|++..+.....+ +++.......+... ...+.+|||+|. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34679999999999999999999999888655444 33444444445554 356788999992 2333
Q ss_pred hhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccH-------HHHHHHH
Q 005908 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-------QDSARVT 559 (670)
Q Consensus 487 ~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~-------~~~~~~~ 559 (670)
.. ...+++.+|++|+|+|+++... ....++..+....... ...|+++|+||+|+....... +.++++.
T Consensus 104 ~~--~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RC--ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HH--HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred HH--HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 33 4456678999999999986544 2233343333211100 046999999999987643322 4577888
Q ss_pred HHhCCCCcEEeecc-----cC-ChHHHHHHHHHHHhC
Q 005908 560 QELGIEPPIPVSMK-----SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 560 ~~~~~~~~~~vSA~-----~g-~v~~l~~~l~~~~~~ 590 (670)
+..+.. ++.++++ ++ ++.++++.+.+.+..
T Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 179 DIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888876 7777665 34 789999999888754
No 292
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=1.5e-15 Score=168.09 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=113.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC-----CCCC------CCCeE----eCCcc---cCCceeEEEEeCCCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEK-----VPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSS 69 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~-----~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~ 69 (670)
.+..+|+|+|+.++|||||+++|+... +... .... .+.+. ....+ +...+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 345789999999999999999998631 1110 0000 00000 11111 233588999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (670)
.+|...+..+++.+|++|+|+|+++..+.+.... |..... . ++|+++|+||+|+...+ ..+...++...++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-Q--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-C--CCCEEEEEeccCccccC----HHHHHHHHHHhhCC
Confidence 9999989999999999999999999887777653 554443 3 79999999999997642 23444555555542
Q ss_pred C-CeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 150 I-ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 150 ~-~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
. .+++++||++|.||+++++.+.+.+..+.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 1 24899999999999999999999887654
No 293
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.64 E-value=2.1e-17 Score=180.36 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=117.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..++|+|+|.+|+|||||+++|.+..+.....++++.++....+.++ ....+.+||++|++.|..+ ...++..+|++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~--~~~~~~~aD~v 79 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAM--RARGTQVTDIV 79 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTS--BBSSSBSBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHH--HHHHHccCCEE
Confidence 45789999999999999999999887766655655554544455554 2346778999999988887 77888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHHHHH---HHHhC-CCCcEEeecccC
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV---TQELG-IEPPIPVSMKSK 575 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~---~~~~~-~~~~~~vSA~~g 575 (670)
++|+|++++...+.... +..+... ++|+++|+||+|+.+.... ......+ +..++ ..+++++||++|
T Consensus 80 ILVVDa~dg~~~qt~e~-l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 80 ILVVAADDGVMKQTVES-IQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp EEECBSSSCCCHHHHHH-HHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEEEECCCCccHHHHHH-HHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 99999999876554433 3333332 6899999999999753221 2222111 11111 125899999999
Q ss_pred -ChHHHHHHHHHHHhCCC
Q 005908 576 -DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 576 -~v~~l~~~l~~~~~~~~ 592 (670)
|++++++.+...+..+.
T Consensus 153 ~GI~eLle~I~~l~~~~~ 170 (537)
T 3izy_P 153 ENMMALAEATIALAEMLE 170 (537)
T ss_dssp CSSHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHhhhccc
Confidence 99999999999876443
No 294
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.64 E-value=1.8e-15 Score=167.83 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------C--CCcccceEE--EEEEc---CCCceEEEEEecCChh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-----------A--PTTGEQYAV--NVVDQ---PGGNKKTLILQEIPEE 483 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~--~t~~~~~~~--~~vd~---~g~~~~~~i~d~~g~~ 483 (670)
+..+|+|+|.+++|||||+++|+........ + .+.+..+.. ..+.+ +|....+.+|||+|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999999863211100 0 011111111 11111 4445788899999998
Q ss_pred hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (670)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (670)
.|... ...+++.+|++|+|+|++++.+++....|...... ++|+++|+||+|+.... ..+..+++.+.++
T Consensus 83 dF~~e--v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg 152 (599)
T 3cb4_D 83 DFSYE--VSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG 152 (599)
T ss_dssp GGHHH--HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred HHHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence 88776 77889999999999999999888877777665532 69999999999998643 3445667777777
Q ss_pred CC--CcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908 564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 564 ~~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
+. +++++||++| |++++++.+.+.+..+..
T Consensus 153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred CCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 64 5999999999 999999999999876553
No 295
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=7.4e-15 Score=157.36 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=106.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----ceEEEE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI 476 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~--t~~~~~~~~~vd~-------------~--g~----~~~~~i 476 (670)
+..++|+++|.+++|||||+++|.+.... ....+ |+...+....+.. + |. ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999965422 22222 4443333322211 2 11 257889
Q ss_pred EecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HH
Q 005908 477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQ 553 (670)
Q Consensus 477 ~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~ 553 (670)
||++|++.|... ....+..+|++|+|+|++++....+..+.+..+.... ..|+++|+||+|+.+.... .+
T Consensus 86 iDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 86 VDSPGHETLMAT--MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EECSSHHHHHHH--HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EECCCHHHHHHH--HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999988775 6777888999999999997642223333333333221 3589999999999874432 34
Q ss_pred HHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 554 DSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 554 ~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
++.++++... ..+++++||++| |+++|++.|.+.+..+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 4555554421 236999999999 99999999998776543
No 296
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=6e-16 Score=171.83 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=107.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-C---CCCCeEeCCc--------------ccCCceeEEEEeCCCCcc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-P---VHAPTRLPPD--------------FYPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~-~---~~~~~~~~~~--------------~~~~~~~~~i~Dt~G~~~ 71 (670)
.+..+|+|+|++|+|||||+++|++..+....+ + ..+....... +......+.||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 456899999999999999999999766543322 1 1111111100 111223599999999999
Q ss_pred chhhhHHHhccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc--------------c
Q 005908 72 NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------------T 134 (670)
Q Consensus 72 ~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------------~ 134 (670)
|...+..+++.+|++|+|+|+++ +++++.+. .++.. ++|+++|+||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99888888999999999999998 55555432 34444 7999999999999643110 0
Q ss_pred ch----hhhhhHHHHHh----------------ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 135 SL----EEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 135 ~~----~~~~~~~~~~~----------------~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.. .+.+..+...+ +...+++++||++|.||+++++.+...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 01111111111 12237999999999999999999987654
No 297
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=3.2e-15 Score=165.37 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=116.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CC------CCcccceEEEEEE-cCCCceEEEEEecCChh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------YA------PTTGEQYAVNVVD-QPGGNKKTLILQEIPEE 483 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-----------~~------~t~~~~~~~~~vd-~~g~~~~~~i~d~~g~~ 483 (670)
+..+|+|+|.+++|||||+++|+....... .+ .|+........+. .+|....+.+|||+|+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 457999999999999999999986321110 00 0111111111122 24445788899999998
Q ss_pred hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (670)
Q Consensus 484 ~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (670)
.|... ...+++.+|++|+|+|++++.+.+....|..... . ++|+++|+||+|+.... ..+..+++.+.++
T Consensus 85 dF~~e--v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYE--VSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHH--HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHHH--HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 88776 6778899999999999999988888777766543 2 69999999999998643 3444566777777
Q ss_pred CC--CcEEeecccC-ChHHHHHHHHHHHhCCCC
Q 005908 564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPHL 593 (670)
Q Consensus 564 ~~--~~~~vSA~~g-~v~~l~~~l~~~~~~~~~ 593 (670)
+. +++++||++| |++++++.+.+.+..+..
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 64 5899999999 999999999999876553
No 298
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.64 E-value=1.3e-15 Score=164.40 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=105.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP 468 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~ 468 (670)
.+..++|+++|.+|+|||||+++|++........ ..++.+.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4566999999999999999999997543221110 112223333445554
Q ss_pred CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCccc---H---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~N 541 (670)
...+.+||++|++.|... +..++..+|++|+|+|++++.. | .+..+.+..+... ++| +|+|+|
T Consensus 94 --~~~~~iiDTPGh~~f~~~--~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviN 163 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPN--MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLIN 163 (439)
T ss_pred --CeEEEEEECCChHHHHHH--HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEee
Confidence 357889999999988776 7788899999999999998742 1 1233333333332 567 999999
Q ss_pred CCCCCCCc-------ccHHHHHHHHHHhCCC-----CcEEeecccC-ChHHHHH
Q 005908 542 KDDLKPYT-------MAVQDSARVTQELGIE-----PPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 542 K~Dl~~~~-------~~~~~~~~~~~~~~~~-----~~~~vSA~~g-~v~~l~~ 582 (670)
|+|+.... ...++...+.+.+++. +++++||++| |+.++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99996421 1134555566666652 5999999999 9998655
No 299
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=1.6e-15 Score=152.56 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=105.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCC-cccceEEEEEEcCCCceEEEEEecCChhhHhh--------h-h
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK--------I-L 489 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~t-~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~--------~-~ 489 (670)
...++|+|+|.+|||||||+|+|++....... .++ ++.......+... ...+.+|||+|...+.. + .
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 45699999999999999999999998744433 233 3333444444444 35688899999754321 0 0
Q ss_pred chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEe-CCCCCCCcccH-------HHHHHHHHH
Q 005908 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS-KDDLKPYTMAV-------QDSARVTQE 561 (670)
Q Consensus 490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~N-K~Dl~~~~~~~-------~~~~~~~~~ 561 (670)
....+++.+|++|+|+|+++... ....+...+....... ...|.++|+| |+|+....... ..++.+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCH--HHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCH--HHHHHHHHHHHHhCch-hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHH
Confidence 12347789999999999986222 1222223333322110 0246666666 99998532211 234456666
Q ss_pred hCCC----CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 562 LGIE----PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 562 ~~~~----~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
++.. ..+++||++| |++++|+.|.+.+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 6532 1289999999 999999999998865
No 300
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.63 E-value=1.8e-15 Score=164.92 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=110.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCC----C---CCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERP----F---SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKE 493 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~----~---~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~ 493 (670)
...++|+++|.+++|||||+++|.+.. . .....+.++.+.....+.++ ...+.+||++|++.+... ...
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~--~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRA--VVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHH--HHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHH--HHH
Confidence 346999999999999999999999876 1 11111212222222233444 367889999999888766 678
Q ss_pred hcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHh-CC--CCc
Q 005908 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-GI--EPP 567 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~-~~--~~~ 567 (670)
.+..+|++|+|+|++++.. .+..+++..+... ++|+++|+||+|+.+.... .+++.++.+.. ++ .++
T Consensus 93 ~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPK-TQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 8899999999999998543 2223333333333 6899999999999863222 34455555555 32 369
Q ss_pred EEeecccC-ChHHHHHHHHHHHhCC
Q 005908 568 IPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
+++||++| |++++++.|.+.+..+
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHHhhcCc
Confidence 99999999 9999999999987533
No 301
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=3e-16 Score=167.55 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=113.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC-------CCCC--CCC-----CCCCeE--eCCcccCCceeEEEEeCCCCccch
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLENK 73 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~ 73 (670)
++.++|+++|++|+|||||+++|++.. +... .+. ..+.+. ....+...+..+.||||||+++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 357899999999999999999998741 1110 000 000111 112244567889999999999988
Q ss_pred hhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhcc--
Q 005908 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-- 149 (670)
Q Consensus 74 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-- 149 (670)
..+..+++.+|++|+|+|+++....+... ++..++.. ++| +++|+||+|+.+.... ....+.+..+.+.++.
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999999865444332 33555554 788 7899999999752111 0122344556665542
Q ss_pred -CCeEEEeCcccCCC----------chHHHHHHHHHHcCC
Q 005908 150 -IETCVECSATTMIQ----------VPDVFYYAQKAVLHP 178 (670)
Q Consensus 150 -~~~~~~~SA~~~~g----------i~~l~~~i~~~~~~~ 178 (670)
..+++++||++|.| +.++++.+.+.+..+
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 24799999999775 888998888776543
No 302
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=3.1e-16 Score=158.93 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=88.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC-CCCC-------CCCCCCeEeCCccc--CCceeEEEEeCCCCcc-------c
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV-PEKV-------PPVHAPTRLPPDFY--PDRVPVTIIDTSSSLE-------N 72 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~-------~ 72 (670)
...++|+|+|.+|||||||+|+|++... .... .++.+.......+. +..+.+.+|||||+.+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3469999999999999999999987763 3323 22222222222232 3346899999999842 2
Q ss_pred hhhh-------HHHhcc-------------CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908 73 KGKL-------NEELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (670)
Q Consensus 73 ~~~~-------~~~~~~-------------ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 132 (670)
.... ..++.. +|+++++++.+... +......+++.+.. ++|+|+|+||+|+.....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence 2222 344443 78999999765521 22222236666654 799999999999865322
Q ss_pred ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
.....+.+.......+ .+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 2011122222223333 3689999999999999999988765
No 303
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.63 E-value=1.3e-15 Score=163.47 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=108.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC---CCCC-CCCC-CCCeEeCCcc---------------c--C----CceeE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPV-HAPTRLPPDF---------------Y--P----DRVPV 61 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~---~~~~-~~~~-~~~~~~~~~~---------------~--~----~~~~~ 61 (670)
...+.++|+++|+.++|||||+++|++.. +... .+++ .........+ . . ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34667999999999999999999999643 2222 1211 1111000000 0 1 12789
Q ss_pred EEEeCCCCccchhhhHHHhccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchh
Q 005908 62 TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE 137 (670)
Q Consensus 62 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~ 137 (670)
.||||||+++|...+...+..+|++|+|+|+++. ++.+.+. .++... ..|+++|+||+|+.+........
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~~-~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQIIG-QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHHT-CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHcC-CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999998887777888899999999999864 3444332 233332 36899999999997643210111
Q ss_pred hhhhHHHHHh-ccCCeEEEeCcccCCCchHHHHHHHHHHcCCC
Q 005908 138 EVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 179 (670)
+.+..+.... ....+++++||++|.||+++++.+.+.+..+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 2233333321 12247999999999999999999998776543
No 304
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=8.3e-15 Score=157.15 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----ceEEE
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTL 475 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~---~~~~~--t~~~~~~~~~vd~-------------~--g~----~~~~~ 475 (670)
.+..++|+++|.+++|||||+++|++.... ....+ |+...+....+.. + |. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999999965322 11112 4433333222211 1 11 25788
Q ss_pred EEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---H
Q 005908 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---V 552 (670)
Q Consensus 476 i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~ 552 (670)
+||++|++.|... ....+..+|++|+|+|++++....+..+.+..+.... ..|+++|+||+|+.+.... .
T Consensus 87 iiDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 87 FIDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCChHHHHHH--HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999888765 6777889999999999997642222333333333331 3689999999999874322 2
Q ss_pred HHHHHHHHHh--CCCCcEEeecccC-ChHHHHHHHHHHHhCCC
Q 005908 553 QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (670)
Q Consensus 553 ~~~~~~~~~~--~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~~ 592 (670)
+++.++.+.. ...+++++||++| |+++|++.|.+.+..+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 3333443331 1236999999999 99999999998776543
No 305
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=8.1e-16 Score=149.26 Aligned_cols=164 Identities=14% Similarity=0.060 Sum_probs=101.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc----------chhhhH
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLN 77 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 77 (670)
...+..+|+|+|++|||||||+|+|++..+.....++.+.+.....+...+ .+.+|||||+.. +.....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 345678999999999999999999998775433333233322111111112 588999999753 122233
Q ss_pred HHh---ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEE
Q 005908 78 EEL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV 154 (670)
Q Consensus 78 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (670)
.++ +.++++++|+|+++..+.... .+...+... ++|+++|+||+|+....+.......+..++.+.+....++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 344 578999999999887665432 234444444 7899999999998653211001123334444444334689
Q ss_pred EeCcccCCCchHHHHHHHHHHc
Q 005908 155 ECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 155 ~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
++||+++.|++++++.+.+.+.
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEeecCCCCHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 306
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.62 E-value=1.2e-15 Score=163.43 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=114.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--------CCCCC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~--------~~~~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
+..++|+++|.+|+|||||+++|++. .+... .+. +.+..+....+.+......+.+||++|++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999973 11110 000 1111111122233334467889999999888
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... +..++..+|++|+|+|++++.. .+..+++..+... ++| +++|+||+|+.+.... .++..++.+
T Consensus 89 ~~~--~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 89 IKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp HHH--HHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 766 6788899999999999999865 4455566555544 678 8999999999853221 335666777
Q ss_pred HhCC----CCcEEeecccC-C------------------hHHHHHHHHHHHhCCC
Q 005908 561 ELGI----EPPIPVSMKSK-D------------------LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g-~------------------v~~l~~~l~~~~~~~~ 592 (670)
.+++ .+++++||++| | +.+|++.+.+.+..+.
T Consensus 160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 7775 46999999999 8 7788888888765443
No 307
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.62 E-value=2.5e-16 Score=165.70 Aligned_cols=99 Identities=19% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-cchhhhhhHHHHH
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ 146 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~ 146 (670)
..+.|...+..+.+.+|++++|+|++++. ..|...+++...++|+++|+||+|+...... ....+.+....+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHH
Confidence 35678888889999999999999998853 2477777776668999999999999754321 0011222233444
Q ss_pred hcc-CCeEEEeCcccCCCchHHHHHHH
Q 005908 147 FRE-IETCVECSATTMIQVPDVFYYAQ 172 (670)
Q Consensus 147 ~~~-~~~~~~~SA~~~~gi~~l~~~i~ 172 (670)
.+. ..+++.+||++|.|++++++.+.
T Consensus 129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~ 155 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQGIAELADAIE 155 (368)
T ss_dssp TTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence 442 12689999999999998887543
No 308
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.62 E-value=5e-16 Score=167.76 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------------------------CCCCCCCeEeCCcccC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYP 56 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~ 56 (670)
.++.++|+++|++|+|||||+++|++. .+... ..++. .......+..
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giT-i~~~~~~~~~ 81 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT-INLTFMRFET 81 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEEC
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCce-eEeeEEEEec
Confidence 356799999999999999999999864 23211 01110 0111234556
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHH------HHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~------~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
.+..+.||||||+++|...+..+++.+|++|+|+|+++ .+|+.... .....++.. .-.|+++|+||+|+.+.
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCc
Confidence 67899999999999999889999999999999999998 66664331 122233333 12469999999999763
Q ss_pred C--Cc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHHHH
Q 005908 131 H--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 131 ~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l~~ 169 (670)
. +. ....+.+..+...++. ..+++++||++|.||.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 11 0123344555555542 14799999999999986543
No 309
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=170.33 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--------------------------------CCCCCCeEeCCcccC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--------------------------------PPVHAPTRLPPDFYP 56 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 56 (670)
.++.++|+++|++|||||||+++|++....... +++. .......+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiT-id~~~~~~~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTC-CSCSCCEEEC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCee-EeeeeEEEec
Confidence 456899999999999999999999976422111 1111 1112334456
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL---SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~---~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
.+..+.||||||+++|...+..+++.+|++|+|+|+++.. ++ .... .....+... ...|+|+|+||+|+.+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc-CCCeEEEEEecccccch
Confidence 6789999999999999888889999999999999998742 10 1111 122333333 13459999999999864
Q ss_pred CCccch---hhhhhHHHHHhcc---CCeEEEeCcccCCCchHH
Q 005908 131 HNATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (670)
Q Consensus 131 ~~~~~~---~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l 167 (670)
+.. .. .+.+..+...++. ..++++|||++|.||.++
T Consensus 321 ~~~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQ-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHH-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHH-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 322 12 2223334444432 247999999999999876
No 310
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.62 E-value=2.6e-15 Score=160.21 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=113.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC-------CCCC--CCC-----CcccceEEEEEEcCCCceEEEEEecCChhhHhh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERP-------FSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~~--~~~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~ 487 (670)
..++|+++|.+|+|||||+++|++.. +... .+. ..+..+....+.+......+.+||++|++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999999741 1100 000 011111112223333446788999999988876
Q ss_pred hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCcc----cHHHHHHHHHHh
Q 005908 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQEL 562 (670)
Q Consensus 488 ~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~----~~~~~~~~~~~~ 562 (670)
. ...++..+|++|+|+|++++...+.. +++..+... ++| +++|+||+|+.+... ..++++++++.+
T Consensus 82 ~--~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 82 N--MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp H--HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred H--HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 5 67889999999999999997654433 333444433 688 789999999985222 134666777777
Q ss_pred CC----CCcEEeecccC-C----------hHHHHHHHHHHHhCCC
Q 005908 563 GI----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH 592 (670)
Q Consensus 563 ~~----~~~~~vSA~~g-~----------v~~l~~~l~~~~~~~~ 592 (670)
++ .+++++||++| | +.+|++.+.+.+..+.
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 75 37999999997 6 8899999988776543
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.7e-16 Score=147.68 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=89.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhccc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (670)
.+.++|+|+|.+|||||||+|+|.+..+... ..++++..+ ....+.+||++|.+.+... +..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCC--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHH--HHHHHHh
Confidence 5679999999999999999999999876542 122332221 2234567999998776654 4445544
Q ss_pred ----ccEEEEEEECC-CcccHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCCcccHHHHHHHHH
Q 005908 498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQ 560 (670)
Q Consensus 498 ----ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 560 (670)
+|++++|+|++ +..++.....|+..+...... ...+.|+++|+||+|+.+.....+..+.+.+
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 89999999999 888999888888777654321 0116999999999999876554444444443
No 312
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.61 E-value=1.2e-15 Score=154.64 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=93.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------CCCcccceEEEEEEcCCCceEEEEEecCChh-------hHh
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------GVK 486 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~-------~~~ 486 (670)
..++|+|+|.+|||||||+|+|++....... .+|++.......+...|....+.+|||+|.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4699999999999999999999887655443 3455544554555555555688899999962 122
Q ss_pred hhh-----chHhhc-------------ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 487 KIL-----SNKEAL-------------ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 487 ~~~-----~~~~~~-------------~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
.+. +...++ ..+|+++++++.+..........+++.+.. ++|+|+|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCH
Confidence 220 002222 237899999987753222333444454433 4899999999999764
Q ss_pred cccH---HHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 549 TMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 549 ~~~~---~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
.... +.+.+.....++. ++.+||+++ |++++++.|.+.++
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcCCC
Confidence 3332 2334444455665 899999999 99999999988653
No 313
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=1.1e-15 Score=167.82 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=87.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------CCC-------CCcccceEEEEEEcCCCceEEEEEec
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NYA-------PTTGEQYAVNVVDQPGGNKKTLILQE 479 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~---------------~~~-------~t~~~~~~~~~vd~~g~~~~~~i~d~ 479 (670)
+..+|+|+|.+|||||||+|+|+...... ..+ ..++.......+.. +...+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence 35799999999999999999997321111 000 01111122223333 3467889999
Q ss_pred CChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHH
Q 005908 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT 559 (670)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 559 (670)
+|+..+... +..+++.+|++|+|+|++++.+.+....| ..+... ++|+++|+||+|+.... ..+..+++.
T Consensus 90 PG~~df~~~--~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~ 159 (528)
T 3tr5_A 90 PGHADFTED--TYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR------HTPIMTFINKMDRDTRP-SIELLDEIE 159 (528)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT------TCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence 999888776 78899999999999999998876665544 344333 69999999999997532 223344444
Q ss_pred HHh
Q 005908 560 QEL 562 (670)
Q Consensus 560 ~~~ 562 (670)
+.+
T Consensus 160 ~~l 162 (528)
T 3tr5_A 160 SIL 162 (528)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 314
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.61 E-value=2e-15 Score=174.09 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=114.9
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHcCC-------CCC--CCC-----CCCCCeE--eCCcccCCceeEEEEeCCCCc
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVP-----PVHAPTR--LPPDFYPDRVPVTIIDTSSSL 70 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~-------~~~--~~~-----~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 70 (670)
...++.++|+++|++++|||||+++|++.. +.. ..+ ...+.+. ....+...+..+.||||||++
T Consensus 291 ~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 291 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred hccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 345678999999999999999999998741 110 000 0011111 122345567889999999999
Q ss_pred cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCCCc-cchhhhhhHHHHHhc
Q 005908 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (670)
Q Consensus 71 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 148 (670)
+|...+...++.+|++|+|+|+++....+.. .++..++.. ++| +|+|+||+|+.+.... ....+.+..+...++
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888999999999999999986543332 255556555 788 7899999999753211 012234455566554
Q ss_pred c---CCeEEEeCcccC--------CCchHHHHHHHHHHcCC
Q 005908 149 E---IETCVECSATTM--------IQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 149 ~---~~~~~~~SA~~~--------~gi~~l~~~i~~~~~~~ 178 (670)
. ..+++++||++| .||.++++.+.+.+..+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 2 247999999999 46889999888766543
No 315
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.60 E-value=1e-15 Score=161.05 Aligned_cols=149 Identities=16% Similarity=0.119 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 93 (670)
+|+++|++|+|||||+++|+.... + ..... ..+...+..+.+|||||+++|...+...++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi-----T-i~~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT-----S-SDITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE-----E-SSSEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE-----E-EEeeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 899999999999999999981111 0 11111 1244556789999999999998888889999999999999 5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCE-EEEEe-CCCCCCCCCccchhhhhhHHHHHhc-cCCeEEE--eCccc---CCCch
Q 005908 94 QQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MIQVP 165 (670)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~SA~~---~~gi~ 165 (670)
.. ...... .+...++.. ++|. ++++| |+|+ +........+.+..+.+.++ ...++++ +||++ |.||+
T Consensus 94 ~g-~~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 94 QG-LDAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp TC-CCHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CC-CcHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHH
Confidence 43 333333 366666665 6787 88999 9999 43221001123333333332 1247999 99999 99999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++++.+.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99998887653
No 316
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=3.5e-15 Score=148.54 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=104.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCC--cccceEEEEEEcCCCceEEEEEecCCh--------hhHhh-hh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT--TGEQYAVNVVDQPGGNKKTLILQEIPE--------EGVKK-IL 489 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t--~~~~~~~~~vd~~g~~~~~~i~d~~g~--------~~~~~-~~ 489 (670)
...++|+|+|.+|||||||+|+|++..+.....++ ++.......+... ...+.+|||+|. +.+.. +.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45799999999999999999999998877654432 2222333334443 466788999994 22211 10
Q ss_pred c-hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-------HHHHHHHHHH
Q 005908 490 S-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQE 561 (670)
Q Consensus 490 ~-~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~ 561 (670)
+ .....+.+|++|+|+|+++. + .....++..+.........+.|+|+++||+|+...... .+..+.+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~-~-~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRF-T-AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBC-C-HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCC-C-HHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 0 11233899999999999853 2 22233344444332211114899999999999763221 1346777788
Q ss_pred hCCCCcEEeeccc-----C-ChHHHHHHHHHHHhC
Q 005908 562 LGIEPPIPVSMKS-----K-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 562 ~~~~~~~~vSA~~-----g-~v~~l~~~l~~~~~~ 590 (670)
.+.. ++.++++. + |+.+|++.|.+.+..
T Consensus 175 ~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 CGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7765 66665443 7 899999999998864
No 317
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.59 E-value=1.8e-15 Score=159.35 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc-cchhhhhhHHHHH
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ 146 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~ 146 (670)
.++.|...+..+++.++++++|+|++++.+ .|.+.+.+...++|+++|+||+|+...... ....+.+......
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 477888889899999999999999998774 255566555568999999999999764321 0011222223344
Q ss_pred hccC-CeEEEeCcccCCCchHHHHHH
Q 005908 147 FREI-ETCVECSATTMIQVPDVFYYA 171 (670)
Q Consensus 147 ~~~~-~~~~~~SA~~~~gi~~l~~~i 171 (670)
.+.. .+++.+||++|.|++++++.+
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHH
Confidence 4421 268999999999999888754
No 318
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.58 E-value=2.4e-15 Score=163.14 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=104.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------------------------CCCCCCCeEeCCcccC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYP 56 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~ 56 (670)
.++.++|+++|++|+|||||+++|++. .+... ..++. .......+..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~ 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFET 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEEC
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEec
Confidence 356799999999999999999999864 12110 01100 0001123455
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCC-EEEEEeCCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG 129 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~ 129 (670)
.+..+.||||||+++|...+..+++.+|++|+|+|+++.. +|+ ...+ ++..+... ++| +|+|+||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHHc--CCCeEEEEEEcccccc
Confidence 6788999999999999988899999999999999998763 221 2222 33334444 565 999999999974
Q ss_pred CCCc--cchhhhhhHHHHHhcc---CCeEEEeCcccCCCchHH
Q 005908 130 DHNA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (670)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gi~~l 167 (670)
.... ....+.+..+...++. ..+++++||++|.||.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2111 0122334455555542 147999999999999764
No 319
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=1.6e-15 Score=155.78 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=101.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----C-CC-----------------------ccc-------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-----A-PT-----------------------TGE------------- 458 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----~-~t-----------------------~~~------------- 458 (670)
...++|+|+|.+|||||||+|+|++..+.... . |+ +..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998875221 1 21 100
Q ss_pred ----------ceEEEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhcccccEEE-EEEECCCcccHH
Q 005908 459 ----------QYAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCDVTI-FVYDSSDEYSWK 514 (670)
Q Consensus 459 ----------~~~~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad~vl-lv~D~s~~~s~~ 514 (670)
...+. +..+ ....+.+||++|.. .+..+ ...+++.++.++ +|+|+++..+..
T Consensus 104 ~g~~~gi~~~~~~~~-~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 104 TGTNKGISPVPINLR-VYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANS 179 (299)
T ss_dssp CSSTTCCCSCCEEEE-EEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGC
T ss_pred cccCCCccccceEEE-EeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHH--HHHHHcCCCeEEEEEecCCcchhhh
Confidence 00000 1111 13467789999952 33444 667888888766 799998865544
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHH--hCCCCcEEeecccC-ChHHHHHHHHHHH
Q 005908 515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 515 ~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSA~~g-~v~~l~~~l~~~~ 588 (670)
....+...+... +.|+++|+||+|+.+.... .+..+..... .++.+++++||++| |++++++.+.+..
T Consensus 180 ~~~~~~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 180 DALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHHHCTT------CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHhCCC------CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 433444444321 6899999999999864332 2211110001 12336899999999 9999999998743
No 320
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.58 E-value=1.3e-14 Score=164.28 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCC------------------CCeEeCCcccCCceeEEEEeCCCC
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH------------------APTRLPPDFYPDRVPVTIIDTSSS 69 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~Dt~G~ 69 (670)
...+..+|+|+|+.|+|||||+++|++........+.. ........+...++.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34567899999999999999999998543321111100 000011223345788999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
.++...+..+++.+|++++|+|+++....... .++..+... ++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 99988899999999999999998876554443 366666665 79999999999987
No 321
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=7e-15 Score=147.89 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=85.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhHHHhc------
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------ 81 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 81 (670)
++.++|+++|.+|||||||+|+|++..+ ....+++.... ....+...+..+.+|||||+.++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP-VMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceee-EEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4679999999999999999999999884 33333322111 22234456779999999999877655544443
Q ss_pred ---cCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-C--CCCEEEEEeCCCCCCCCC
Q 005908 82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDHN 132 (670)
Q Consensus 82 ---~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~pvilv~NK~Dl~~~~~ 132 (670)
.+|++++|+|++... +......|++.++... . ..|+++|+||+|+...+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence 789999999987654 4443335777776542 2 249999999999975443
No 322
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.57 E-value=5.5e-16 Score=172.83 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=83.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------------------CCCCCCCeEeCCcccC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP 56 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~ 56 (670)
.++.++|+|+|++|+|||||+++|++.. +... .+++. .......+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiT-id~~~~~~~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVT-MDVASTTFES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCee-EEeeEEEEEe
Confidence 4567899999999999999999996431 1000 01100 0112223444
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hH--HHHHHHHHHHHHhcCCCCC-EEEEEeCCCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGD 130 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~ 130 (670)
.+..+.||||||+.+|...+...++.+|++|+|+|+++.. ++ .......+..+... ++| +|+|+||+|+.+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 5678999999999999888888999999999999998642 11 11011133344444 565 9999999999753
Q ss_pred CCccchhhhhhHHHHH----hcc---CCeEEEeCcccCCCch
Q 005908 131 HNATSLEEVMGPIMQQ----FRE---IETCVECSATTMIQVP 165 (670)
Q Consensus 131 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~SA~~~~gi~ 165 (670)
... ........+... ++. ..+++++||++|.||.
T Consensus 331 ~~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 221 122222333322 231 1269999999999998
No 323
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.9e-16 Score=163.26 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=84.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCC-C-------CCCCCeEeCCccc--CCceeEEEEeCCCC-------ccc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKV-P-------PVHAPTRLPPDFY--PDRVPVTIIDTSSS-------LEN 72 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~-~~~~~-~-------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~-------~~~ 72 (670)
..++|+|+|++|||||||+|+|++.. +.... + ++.........+. .....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999987754 32221 1 1111111111222 22457999999999 555
Q ss_pred hhhhH-------HHhccCCEE-----------EEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCc
Q 005908 73 KGKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (670)
Q Consensus 73 ~~~~~-------~~~~~ad~i-----------i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 133 (670)
..+.. .+++.++++ +++|++++ ..++..+...|++.+ ..++|+|+|+||+|+...+.+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 55554 666554432 35555544 455655554455554 357999999999999765433
Q ss_pred cchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
....+.+..++..++ .+++++||++|.| ++.|..+.+.+..
T Consensus 193 ~~~k~~i~~~~~~~~--i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 193 ERLKKRILDEIEEHN--IKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHTTCC---CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 111123344444444 3789999999998 7878777776643
No 324
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=1.4e-14 Score=156.32 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=103.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------CCCCccc---------------------ceEEEEEEc
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------YAPTTGE---------------------QYAVNVVDQ 467 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------------~~~t~~~---------------------~~~~~~vd~ 467 (670)
+..++|+++|.+|+|||||+++|++...... ..+|++. +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999987542111 1122211 112223333
Q ss_pred CCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCC-cEEEEEeCCCCC
Q 005908 468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-PCLLIASKDDLK 546 (670)
Q Consensus 468 ~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~NK~Dl~ 546 (670)
+ ...+.+||++|++.|... ...++..+|++|+|+|++++.. ....+++..+... +. |+++|+||+|+.
T Consensus 102 ~--~~~~~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~------~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 A--KRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL------GIKHIVVAINKMDLN 170 (434)
T ss_dssp S--SEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred C--CceEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEEcCcCC
Confidence 3 457889999999988776 6778899999999999999865 3344454444433 34 699999999998
Q ss_pred CCcc-----cHHHHHHHHHHhC--C--CCcEEeecccC-ChHHH
Q 005908 547 PYTM-----AVQDSARVTQELG--I--EPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 547 ~~~~-----~~~~~~~~~~~~~--~--~~~~~vSA~~g-~v~~l 580 (670)
+... ..++..++++.++ . .+++++||++| |++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 6321 2345666667777 2 25899999999 99874
No 325
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.56 E-value=1.8e-14 Score=163.76 Aligned_cols=237 Identities=13% Similarity=0.090 Sum_probs=136.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC--C-CC--C---------CCCeE--eCCcccCC-------ceeEE
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK--V-PP--V---------HAPTR--LPPDFYPD-------RVPVT 62 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~--~-~~--~---------~~~~~--~~~~~~~~-------~~~~~ 62 (670)
...+..+|+|+|+.|+|||||+++|+... +... . ++ . .+.+. ....+... .+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997532 1110 0 00 0 00011 01112222 38999
Q ss_pred EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH
Q 005908 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142 (670)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~ 142 (670)
||||||+.+|...+..+++.+|++|+|+|+++........ ++..+... ++|+++|+||+|+...+ ..+..+.
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~ 157 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQ 157 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHH
Confidence 9999999999889999999999999999999876655543 33444444 79999999999987643 3455566
Q ss_pred HHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCCCC-C---CCc-----cccccccHHHHHHH-HHHHHHhCCC----
Q 005908 143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTA-P---LFD-----HDEQTLKPRCVRAL-KRIFIICDHD---- 208 (670)
Q Consensus 143 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~-~---~~~-----~~~~~~~~~~~~~l-~ri~~~~d~~---- 208 (670)
+...++.....+.+....+.++..+++.+......... . .+. ........+.+..| +.+....+..
T Consensus 158 l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~ 237 (704)
T 2rdo_7 158 IKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKY 237 (704)
T ss_pred HHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666532212222222233333233322222211110 0 000 00000011111112 2222211111
Q ss_pred -CCCCCChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908 209 -MDGALNDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (670)
Q Consensus 209 -~~~~l~~~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~~ 252 (670)
.+..++.+++...-+ -+|++++...+++.|++.+.+++|+|.+.
T Consensus 238 l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~ 292 (704)
T 2rdo_7 238 LGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDV 292 (704)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhc
Confidence 133455665554333 25788899999999999999999998764
No 326
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=1.1e-14 Score=159.51 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=98.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------CCCCcccceEEEEEEcCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQPG 469 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------------------------------~~~t~~~~~~~~~vd~~g 469 (670)
+..+||+++|.+|+|||||+|+|++...... ....++.+.....++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 4679999999999999999999986521110 0011112222333444
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHH------HHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVPCLLIASKD 543 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~piilv~NK~ 543 (670)
....+.+||++|++.|... +..++..+|++|+|+|++++.++. ........+... . ..|+|+|+||+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~--~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~----~~~iIvviNK~ 181 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G----IHNLIIAMNKM 181 (483)
T ss_dssp SSCEEEEECCCCCGGGHHH--HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T----CCCEEEEEECG
T ss_pred CCceEEEEECCCcHHHHHH--HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C----CCcEEEEEECc
Confidence 3467889999999988876 788899999999999999975432 222222222222 1 25699999999
Q ss_pred CCCCCcc-c----HHHHHHHHHHhCCC----CcEEeecccC-ChHH
Q 005908 544 DLKPYTM-A----VQDSARVTQELGIE----PPIPVSMKSK-DLNN 579 (670)
Q Consensus 544 Dl~~~~~-~----~~~~~~~~~~~~~~----~~~~vSA~~g-~v~~ 579 (670)
|+.+... . .+++..+.+.+++. +++++||++| |+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 9986321 1 33444555555542 5899999999 9874
No 327
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=1.7e-15 Score=172.19 Aligned_cols=235 Identities=12% Similarity=0.073 Sum_probs=143.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHc--CCCCCC---CC--CCC---------CCeE--eCCcccCCceeEEEEeCCCC
Q 005908 8 SSRTGVRVVVVGDRGTGKSSLIAAAAT--ESVPEK---VP--PVH---------APTR--LPPDFYPDRVPVTIIDTSSS 69 (670)
Q Consensus 8 ~~~~~~kI~ivG~~~vGKSSLi~~l~~--~~~~~~---~~--~~~---------~~~~--~~~~~~~~~~~~~i~Dt~G~ 69 (670)
...+..+|+|+|++|+|||||+|+|+. +.+... .+ .+. +.+. ....+...++.++||||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345678999999999999999999985 222100 00 000 0000 11123345788999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhcc
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (670)
.++...+..+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+...+ ..+.++.+...++.
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQA 157 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCC
Confidence 999888999999999999999999887776654 34455555 89999999999997642 33445555555542
Q ss_pred --CCeEEEeCcccCCCchHHHHHHHHHHcCCC-C--CCCcc-cc-ccc---cHHHHHHH-HHHHHHhCC-----CCCCCC
Q 005908 150 --IETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFDH-DE-QTL---KPRCVRAL-KRIFIICDH-----DMDGAL 213 (670)
Q Consensus 150 --~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~-~--~~~~~-~~-~~~---~~~~~~~l-~ri~~~~d~-----~~~~~l 213 (670)
....+++|+ +.|+..+++.+........ . ..+.. .. ... .+..+..+ +.+....+. ..+..+
T Consensus 158 ~~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~ 235 (693)
T 2xex_A 158 NAAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEI 235 (693)
T ss_dssp CEEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCC
T ss_pred CceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCC
Confidence 123678888 6667766655432221111 0 00000 00 001 11112222 111111000 013346
Q ss_pred ChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHhhhcCCCccc
Q 005908 214 NDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (670)
Q Consensus 214 ~~~el~~~q~----------~~~~~~l~~~~~~~l~~~l~~~~~~~~~~ 252 (670)
+.+++...-+ -+|++++...+++.+++.+.+++|+|.+.
T Consensus 236 ~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~ 284 (693)
T 2xex_A 236 SVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDV 284 (693)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGS
T ss_pred CHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhc
Confidence 6666554332 26888999999999999999999998763
No 328
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.56 E-value=2.2e-14 Score=162.97 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCCCCCCCcceEEEEEcCCCCCHHHHHHHHHcCC--CCC--CC-C--CC---------CCCeE--eCCcccCCceeEE
Q 005908 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPE--KV-P--PV---------HAPTR--LPPDFYPDRVPVT 62 (670)
Q Consensus 1 m~~~~~~~~~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~--~~-~--~~---------~~~~~--~~~~~~~~~~~~~ 62 (670)
|+-.......+..+|+|+|++|+|||||+++|+... +.. .. . .. .+.+. ....+...++.++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 443334445667899999999999999999998421 100 00 0 00 00000 1112334578999
Q ss_pred EEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
||||||+.+|...+..+++.+|++|+|+|+++..+..... .|. .+... ++|+++|+||+|+...
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccC
Confidence 9999999999999999999999999999999988777654 244 45554 8999999999998754
No 329
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=1.7e-14 Score=163.95 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=109.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCCCCCeEe--------CCccc------------------CCc---
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRL--------PPDFY------------------PDR--- 58 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~--~~~~~~~~~~--------~~~~~------------------~~~--- 58 (670)
.+.++|+|+|.+|+|||||+|+|++..+... .|++...+.+ ...+. ..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3578999999999999999999999875432 3433211110 00000 000
Q ss_pred ---------------------------eeEEEEeCCCCccc---hhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHH
Q 005908 59 ---------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108 (670)
Q Consensus 59 ---------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~ 108 (670)
..+.||||||.... ...+..+++.+|++|+|+|++++.+..+.. .|...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 46999999997652 344557889999999999999888877765 36555
Q ss_pred HHhcCCCCCEEEEEeCCCCCCCCCccchhh---------hhhH-H---HHHh-c------cCCeEEEeCcc---------
Q 005908 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEE---------VMGP-I---MQQF-R------EIETCVECSAT--------- 159 (670)
Q Consensus 109 l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~---------~~~~-~---~~~~-~------~~~~~~~~SA~--------- 159 (670)
+... +.|+++|+||+|+...... +.++ .+.. + ...+ + ...++++|||+
T Consensus 226 l~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 6544 7899999999998654311 1100 1111 1 1111 1 11268999999
Q ss_pred -----cCCCchHHHHHHHHHHc
Q 005908 160 -----TMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 160 -----~~~gi~~l~~~i~~~~~ 176 (670)
+|.|++++++.+.+.+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988765
No 330
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.55 E-value=2.9e-14 Score=156.61 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=82.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------CCCC---------CCeE--eCCcccCCceeEEEEeCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVH---------APTR--LPPDFYPDRVPVTIIDTS 67 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~-----------~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~ 67 (670)
.+..+|+|+|++|+|||||+++|+...-.... ..+. +.+. ....+...++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 45689999999999999999999864211000 0000 0000 111234567899999999
Q ss_pred CCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 68 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
|+.+|...+..+++.+|++|+|+|+++....... .+...+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 9999988888999999999999999886543322 244555444 7999999999999754
No 331
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=1.2e-14 Score=149.23 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=93.2
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHh--cCCCCCEEEEEe
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRR--LEIKVPIIVAGC 123 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~--~~~~~pvilv~N 123 (670)
.+++++.+|||+|++.+...+..++++++++|||||++ +..++++... |+..+.. ...++|++|++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence 35678999999999999999999999999999999998 6788888875 5555533 235899999999
Q ss_pred CCCCCCCC---------------CccchhhhhhHHHHHh------c------------------cCCeEEEeCcccCCCc
Q 005908 124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV 164 (670)
Q Consensus 124 K~Dl~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~SA~~~~gi 164 (670)
|+|+...+ .. ..++....+..++ . ....+++|||+++.||
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 99986421 11 2445555555666 0 1135899999999999
Q ss_pred hHHHHHHHHHHcC
Q 005908 165 PDVFYYAQKAVLH 177 (670)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (670)
+.+|+.+.+.++.
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887663
No 332
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=1.4e-14 Score=146.44 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=83.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCCCCCeEeCCcccCCceeEEEEeCCCCccchhhhH-------HH-
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EE- 79 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 79 (670)
.+.++|+++|.+|||||||+|+|++..+.. ..+++.... ....+...+..+.+|||||+.++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceee-EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999999988532 233322111 2233455678999999999976543222 12
Q ss_pred -hccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCC--CCEEEEEeCCCCCCCCC
Q 005908 80 -LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIK--VPIIVAGCKLDLRGDHN 132 (670)
Q Consensus 80 -~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~--~pvilv~NK~Dl~~~~~ 132 (670)
.+.+|++|+|+|++.. ++......|+..+... ..+ +|+++|+||+|+...+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 3479999999998653 3444433577777654 222 69999999999976543
No 333
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.54 E-value=5.6e-15 Score=160.67 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=91.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCC------------------CCCC---------CCCeE--eCCcccCCc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------VPPV---------HAPTR--LPPDFYPDR 58 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~------------------~~~~---------~~~~~--~~~~~~~~~ 58 (670)
++.++|+++|++++|||||+++|+... +... .+.. .+.+. ....+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 567899999999999999999997521 2100 0000 00010 112344567
Q ss_pred eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChh---hHHH---HHHHHHHHHHhcCCCCC-EEEEEeCCCCCCCC
Q 005908 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLSR---LSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (670)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~---~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~ 131 (670)
..+.||||||+++|...+...++.+|++|+|+|+++.. +|+. ..+ .+..+... ++| +|+|+||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence 88999999999999888889999999999999998862 2221 111 22223333 677 99999999996421
Q ss_pred C--c--cchhhhhhHHHHHh-cc----CCeEEEeCcccCCCchHHHH
Q 005908 132 N--A--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 132 ~--~--~~~~~~~~~~~~~~-~~----~~~~~~~SA~~~~gi~~l~~ 169 (670)
. . ....+.+..+...+ +. ..+++++||++|.||.++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 1 0 01122344444444 21 13699999999999988763
No 334
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=2.1e-14 Score=163.30 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCccc--------ceEEEEE--------------------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGE--------QYAVNVV-------------------------- 465 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~--------~~~~~~v-------------------------- 465 (670)
+..++|+|+|.+|+|||||+|+|++..+.++.. |+|.. .......
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 456999999999999999999999988766544 44421 1111111
Q ss_pred -------------------EcCCCc--eEEEEEecCChhhHhh-hhchHhhcccccEEEEEEECCCcccHHHHHHHHHHH
Q 005908 466 -------------------DQPGGN--KKTLILQEIPEEGVKK-ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV 523 (670)
Q Consensus 466 -------------------d~~g~~--~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i 523 (670)
..|... ..+.+|||+|...... ...+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 111000 2477899999755332 112567889999999999999988877665554444
Q ss_pred HHhcCCCCCCCcEEEEEeCCCCCCCccc-H----------HHHHH-HHHHh----C-------CCCcEEeecc-------
Q 005908 524 ARLGEDSGYGVPCLLIASKDDLKPYTMA-V----------QDSAR-VTQEL----G-------IEPPIPVSMK------- 573 (670)
Q Consensus 524 ~~~~~~~~~~~piilv~NK~Dl~~~~~~-~----------~~~~~-~~~~~----~-------~~~~~~vSA~------- 573 (670)
... +.|+++|+||+|+...... . ..+.. +...+ + ..++++|||+
T Consensus 227 ~~~------~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 227 KGR------GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp TTS------CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred Hhh------CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 322 5889999999998753200 0 01111 11111 1 1368999999
Q ss_pred -------cC-ChHHHHHHHHHHHhC
Q 005908 574 -------SK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 574 -------~g-~v~~l~~~l~~~~~~ 590 (670)
+| |++++++.+.+.+..
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHHH
Confidence 99 999999999887753
No 335
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=1.8e-14 Score=149.15 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CCC---CCeEeC------------------------------
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----PVH---APTRLP------------------------------ 51 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~----~~~---~~~~~~------------------------------ 51 (670)
.....+|+|+|++|||||||+|+|++..+..... ... ..++..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456799999999999999999999988632211 000 011100
Q ss_pred --------C---------------cccCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEEEEEECCCh
Q 005908 52 --------P---------------DFYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQ 95 (670)
Q Consensus 52 --------~---------------~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~d~~~~ 95 (670)
. ........+.+|||||... +......+++.+|++++|+|.++.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 0 0112346799999999864 334556789999999999997433
Q ss_pred h-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-CeEEEeCcc---c---CCCchHH
Q 005908 96 S-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECSAT---T---MIQVPDV 167 (670)
Q Consensus 96 ~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~---~---~~gi~~l 167 (670)
. ...... .+...+... ++|+++|+||+|+...... . ...+...+... ..++++|+. + +.|+.++
T Consensus 181 ~~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~---~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l 252 (315)
T 1jwy_B 181 DLANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--A---MEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES 252 (315)
T ss_dssp CSTTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--C---HHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred chhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--H---HHHHhCCCccCCCCeEEEecCChhhhccCCCHHHH
Confidence 2 111111 255555444 7999999999999765431 1 11111211111 245555554 5 7889999
Q ss_pred HHHHHHHHcC
Q 005908 168 FYYAQKAVLH 177 (670)
Q Consensus 168 ~~~i~~~~~~ 177 (670)
++.+.+.+..
T Consensus 253 ~~~~~~~~~~ 262 (315)
T 1jwy_B 253 LKSEILYFKN 262 (315)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9988877654
No 336
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.54 E-value=2.2e-14 Score=159.23 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=103.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------C------CceEEEEEecCChhhH
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------G------GNKKTLILQEIPEEGV 485 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~----------g------~~~~~~i~d~~g~~~~ 485 (670)
..++|+|+|.+|+|||||+++|.+..+.......++.......+... + ....+.+|||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 35799999999999999999999865543222111111111222211 0 1125789999999988
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--------------c
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--------------A 551 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~ 551 (670)
..+ ...+++.+|++|+|+|++++..-+....| ..+... ++|+++|+||+|+..... .
T Consensus 84 ~~~--~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~~------~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTL--RKRGGALADLAILIVDINEGFKPQTQEAL-NILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTS--BCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHHc------CCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 877 66788999999999999995332222222 233332 699999999999964211 0
Q ss_pred -------HHHHHHHH---HHhCC--------------CCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 552 -------VQDSARVT---QELGI--------------EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 552 -------~~~~~~~~---~~~~~--------------~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
.+...++. ...++ .|++++||++| |++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00111111 12222 26999999999 99999999998765
No 337
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.54 E-value=3.1e-14 Score=164.28 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=111.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCC-------CCC--CCC-----CCcccceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERP-------FSE--NYA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~--~~~-----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
.+..++|+++|.+|+|||||+++|++.. +.. ..+ .+.+..+....+.+.+....+.+||++|++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999998741 100 000 11111111111223334567889999999998
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCCccc----HHHHHHHHH
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ 560 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~ 560 (670)
... +..++..+|++|+|+|++++...+ ..+++..+... ++| +|+|+||+|+.+.... .+++.++.+
T Consensus 373 ~~~--mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 373 VKN--MITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHH--HHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 776 778899999999999999975533 44455555443 688 7899999999863221 345667777
Q ss_pred HhCC----CCcEEeecccC-C--------hHHHHHHHHHHHhC
Q 005908 561 ELGI----EPPIPVSMKSK-D--------LNNVFSRIIWAAEH 590 (670)
Q Consensus 561 ~~~~----~~~~~vSA~~g-~--------v~~l~~~l~~~~~~ 590 (670)
.+++ .+++++||++| + +.++++.|.+.+..
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 7775 36999999998 4 78888888876653
No 338
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.54 E-value=2e-14 Score=149.66 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc--CCCCCEEEEEeC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 124 (670)
+++.+.+|||+|++.+...+..++++++++|||||+++ ..++++... |+..+... ..++|+|||+||
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK 269 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNK 269 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEEC
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEEC
Confidence 46789999999999999999999999999999999999 567888775 66666542 358999999999
Q ss_pred CCCCCCC---------------CccchhhhhhHHHH-H---h-----ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 125 LDLRGDH---------------NATSLEEVMGPIMQ-Q---F-----REIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 125 ~Dl~~~~---------------~~~~~~~~~~~~~~-~---~-----~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+|+...+ .+ ..++. ..++. . + .....+++|||++|.||.++|+++.+.+.
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~-~~~e~-~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSN-TYEEA-AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCS-CHHHH-HHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccccchhhcccccCCCC-CHHHH-HHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9985321 12 23333 33333 1 1 11236899999999999999999988775
No 339
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.2e-14 Score=160.35 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=102.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP 468 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------------------------------~t~~~~~~~~~vd~~ 468 (670)
.+..++|+++|.+|||||||+|+|++........ +.++.+.....+.++
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3557999999999999999999999774433221 111112222334444
Q ss_pred CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cH---HHHHHHHHHHHHhcCCCCCC-CcEEEEEe
Q 005908 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYG-VPCLLIAS 541 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~-~piilv~N 541 (670)
...+.+||++|++.+... +..+++.+|++|+|+|++++. +| ......+..+... + .|+|+|+|
T Consensus 244 --~~~~~iiDTPG~e~f~~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l------gi~~iIVVvN 313 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN 313 (611)
T ss_dssp --SCEEEEEECCSSSCHHHH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT------TCCEEEEEEE
T ss_pred --CceEEEEECCCCcccHHH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc------CCCeEEEEEe
Confidence 457888999999888776 778899999999999998752 11 1122222222222 3 45999999
Q ss_pred CCCCCCCccc-----HHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908 542 KDDLKPYTMA-----VQDSARVTQELGI----EPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 542 K~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l 580 (670)
|+|+.+.... ......+...+++ .+++++||++| |+.++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999863211 3445555666665 36899999999 99876
No 340
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.53 E-value=6.9e-15 Score=158.80 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=102.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-----------------------------CCCcccceEEEEEEcCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPG 469 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~vd~~g 469 (670)
+..++|+++|.+|+|||||+++|++. .+.... ...++.+.....++.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 45689999999999999999999864 221100 0111112222234443
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHH-------HHHHHHhcCCCCCC-CcEEEEEe
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-------LVEVARLGEDSGYG-VPCLLIAS 541 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~-------~~~i~~~~~~~~~~-~piilv~N 541 (670)
...+.+||++|++.|... +..++..+|++|+|+|+++ .+|+....| ...+... + .|+++|+|
T Consensus 83 -~~~~~iiDtpG~~~f~~~--~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivviN 152 (435)
T 1jny_A 83 -KYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM------GLDQLIVAVN 152 (435)
T ss_dssp -SCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT------TCTTCEEEEE
T ss_pred -CeEEEEEECCCcHHHHHH--HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc------CCCeEEEEEE
Confidence 457889999999998876 7788999999999999999 566644332 2222222 3 46999999
Q ss_pred CCCCCCCc-------ccHHHHHHHHHHhCC----CCcEEeecccC-ChHHHHH
Q 005908 542 KDDLKPYT-------MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 542 K~Dl~~~~-------~~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l~~ 582 (670)
|+|+.+.. ...++++++++.+++ .+++++||++| |+.++++
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 99998621 124567777777774 35999999999 9986543
No 341
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=6.2e-16 Score=167.41 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=104.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEE
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~v 501 (670)
..++|+++|.+++|||||+++|.+..+.....++++.......+.+++ ..+.+||++|++.|..+ +...+..+|++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~--~~~~~~~aD~a 78 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSM--RARGAQATDIV 78 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTS--BCSSSBSCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHH--HHHHHhhCCEE
Confidence 457999999999999999999998655433323222222222344443 35678999999988887 67788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc--cHHHH---HHHHHHhC-CCCcEEeecccC
Q 005908 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDS---ARVTQELG-IEPPIPVSMKSK 575 (670)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~---~~~~~~~~-~~~~~~vSA~~g 575 (670)
++|+|++++...+. ...+..+... +.|+++++||+|+..... ..... ..++..++ ..+++++||++|
T Consensus 79 ILVVda~~g~~~qT-~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 79 VLVVAADDGVMPQT-IEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEEETTTBSCTTT-HHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEEeecccCccHHH-HHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 99999998533222 2222333332 699999999999975211 11110 00111222 136999999999
Q ss_pred -ChHHHHHHHHHH
Q 005908 576 -DLNNVFSRIIWA 587 (670)
Q Consensus 576 -~v~~l~~~l~~~ 587 (670)
|++++++.+...
T Consensus 152 ~gI~eLle~I~~~ 164 (501)
T 1zo1_I 152 TGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTHHHHTTTT
T ss_pred cCcchhhhhhhhh
Confidence 999999998764
No 342
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=5.3e-14 Score=136.37 Aligned_cols=160 Identities=12% Similarity=0.051 Sum_probs=97.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChh----------hHhhh-h
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKI-L 489 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~----------~~~~~-~ 489 (670)
....+|+|+|++|||||||+|+|++..+.....++.+.......+...+ ...+||++|.. .+... .
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4568999999999999999999999874333334443333223333332 34568888863 22221 0
Q ss_pred chHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhCC-C
Q 005908 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGI-E 565 (670)
Q Consensus 490 ~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~-~ 565 (670)
........++++++++|++++.++... .....+... +.|+++|+||+|+...... ...+..++...+. .
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 011223578999999999987665321 222222222 6899999999998763222 2344444444442 2
Q ss_pred CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 566 PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 566 ~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+++++||+++ |++++++.|.+.+..
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4789999999 999999999987753
No 343
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.52 E-value=2.3e-14 Score=146.79 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=90.2
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHh--cCCCCCEEEEEeC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRR--LEIKVPIIVAGCK 124 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK 124 (670)
+++++.+|||+|++.+...+..++++++++|+|||++ +..++++... |+..+.. ...++|++|++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence 5678999999999999999999999999999999665 5677777764 5555543 2358999999999
Q ss_pred CCCCCCC----------------CccchhhhhhHHHHHhcc-------CCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 125 ~Dl~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+|+...+ .+ +.++....+...+.. ...+++|||+++.||+++|+.+.+.++..
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9986532 22 334443443333321 12578999999999999999999887643
No 344
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.3e-15 Score=156.04 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=82.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------CCcccceEEEEEEcCCCceEEEEEecCCh-------hh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG 484 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-------~~ 484 (670)
...++|+|+|++|||||||+|+|++........ +|++.......+...|....+.+||++|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346999999999999999999988754332211 22222222222333333457889999998 55
Q ss_pred HhhhhchH-------hhcccc-------------cEEEEEEECCCcccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCC
Q 005908 485 VKKILSNK-------EALASC-------------DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKD 543 (670)
Q Consensus 485 ~~~~~~~~-------~~~~~a-------------d~vllv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~ 543 (670)
+..+ .. .+++.+ |+++++++.+ +.++..+. .+++.+. . ++|+|+|+||+
T Consensus 115 ~~~i--~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~-----~--~~piIlV~NK~ 184 (361)
T 2qag_A 115 FKTI--ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH-----N--KVNIVPVIAKA 184 (361)
T ss_dssp -CCT--HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC-----S---SCEEEEEECC
T ss_pred HHHH--HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc-----c--CCCEEEEEECC
Confidence 5554 22 444443 3455555432 33444444 3443331 1 69999999999
Q ss_pred CCCCCcccH---HHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 544 DLKPYTMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 544 Dl~~~~~~~---~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
|+...+... +.+.++++.++++ ++++||++| | ++.|..+.+.+.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHH
Confidence 998744332 3555566666665 999999999 8 777777777664
No 345
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.51 E-value=2.5e-14 Score=155.12 Aligned_cols=150 Identities=14% Similarity=0.212 Sum_probs=101.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCCC----------------------CC-------CCcccceEEEEEEcCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSEN----------------------YA-------PTTGEQYAVNVVDQPG 469 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~----------------------~~-------~t~~~~~~~~~vd~~g 469 (670)
+..++|+++|.+|+|||||+|+|++. .+... .+ ..++.+.....++.+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~- 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-
Confidence 35689999999999999999999864 11100 00 111111222234443
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASK 542 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~NK 542 (670)
...+.+||++|++.|... ...++..+|++|+|+|++++. +|+ +..+++..+... +.| +|+|+||
T Consensus 84 -~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK 154 (458)
T 1f60_A 84 -KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNK 154 (458)
T ss_dssp -SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEEC
T ss_pred -CceEEEEECCCcHHHHHH--HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEc
Confidence 467889999999988876 778899999999999999863 221 233333333332 565 9999999
Q ss_pred CCCCCC-cc----cHHHHHHHHHHhCC----CCcEEeecccC-ChHHH
Q 005908 543 DDLKPY-TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV 580 (670)
Q Consensus 543 ~Dl~~~-~~----~~~~~~~~~~~~~~----~~~~~vSA~~g-~v~~l 580 (670)
+|+.+. .. ..+++.++++.+++ .+++++||++| |+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999841 11 24456667777775 46999999999 98743
No 346
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.50 E-value=6.6e-14 Score=147.19 Aligned_cols=145 Identities=13% Similarity=0.161 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEE
Q 005908 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (670)
Q Consensus 425 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv 504 (670)
+|+++|.+|+|||||+++|+.. ..|+ +.....+.++ ...+.+||++|++.|... ....++.+|++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi--~~~~~~~~~~--~~~i~iiDtPGh~~f~~~--~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSS--DITMYNNDKE--GRNMVFVDAHSYPKTLKS--LITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEES--SSEEEEECSS--SSEEEEEECTTTTTCHHH--HHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEE--EeeEEEEecC--CeEEEEEECCChHHHHHH--HHHHHHHCCEEEEE
Confidence 8999999999999999999911 1122 2333345554 346888999999887655 56778999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCCCCCcccH---HHHHHHHHHhCC--CCcEE--eeccc-
Q 005908 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS-KDDLKPYTMAV---QDSARVTQELGI--EPPIP--VSMKS- 574 (670)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~N-K~Dl~~~~~~~---~~~~~~~~~~~~--~~~~~--vSA~~- 574 (670)
+| +++ .+.+..+++..+... ++|. ++++| |+|+ +..... ++++++.+..+. .|+++ +||++
T Consensus 91 vd-~~g-~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 91 IP-PQG-LDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK 161 (370)
T ss_dssp EC-TTC-CCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred Ec-CCC-CcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence 99 655 345566666665554 5777 88999 9999 532222 344444444432 36999 99999
Q ss_pred --C-ChHHHHHHHHHHHhC
Q 005908 575 --K-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 575 --g-~v~~l~~~l~~~~~~ 590 (670)
| |++++++.|.+.+..
T Consensus 162 ~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhccc
Confidence 9 999999999988753
No 347
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=3.2e-14 Score=147.28 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=96.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEE------------------------------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVN------------------------------------ 463 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~------------------------------------ 463 (670)
...++|+|+|.+|||||||+|+|++..+..... .++.....+.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456899999999999999999999988732221 1111000000
Q ss_pred ----------------------EEEcCCCceEEEEEecCChhh-------------HhhhhchHhhcccccEEEEEEECC
Q 005908 464 ----------------------VVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEALASCDVTIFVYDSS 508 (670)
Q Consensus 464 ----------------------~vd~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~ad~vllv~D~s 508 (670)
.+..+ ....+.+|||+|... +... ...+++.+|++++|+|++
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEES
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHH--HHHHHcCCCeEEEEEEec
Confidence 01222 234677899999642 3333 677889999999999974
Q ss_pred Ccc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHH--hCCCCcEEeeccc---C-ChHHH
Q 005908 509 DEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKS---K-DLNNV 580 (670)
Q Consensus 509 ~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSA~~---g-~v~~l 580 (670)
+.. .......+...+.. . +.|+++|+||+|+...... .+..+..... .++.++..+||.+ + |+.++
T Consensus 179 ~~~~~~~~~~~i~~~~~~----~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l 252 (315)
T 1jwy_B 179 NTDLANSDALQLAKEVDP----E--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES 252 (315)
T ss_dssp SSCSTTCSHHHHHHHHCS----S--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred CcchhhhHHHHHHHHhCC----C--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHH
Confidence 332 11111223333322 1 6999999999999864431 2222110001 1222345556666 7 89999
Q ss_pred HHHHHHHHhCC
Q 005908 581 FSRIIWAAEHP 591 (670)
Q Consensus 581 ~~~l~~~~~~~ 591 (670)
++.+.+.+...
T Consensus 253 ~~~~~~~~~~~ 263 (315)
T 1jwy_B 253 LKSEILYFKNH 263 (315)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 99999888653
No 348
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=5.4e-14 Score=148.21 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCC----------------CeE-eC----------------------
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA----------------PTR-LP---------------------- 51 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~----------------~~~-~~---------------------- 51 (670)
.-.+|+|+|++|||||||+|+|++..+.+...+... ... ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 344999999999999999999999876433221110 000 00
Q ss_pred ---------------Cc-ccCCceeEEEEeCCCCccc-------------hhhhHHHhccCCEEEEEEECCChhhHHHHH
Q 005908 52 ---------------PD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLS 102 (670)
Q Consensus 52 ---------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~ 102 (670)
.. .......+.+|||||+..+ ......+++++|++|+|+|..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 00 0122456899999998775 4566689999999999998765433321
Q ss_pred HHHHHHHHhcC-CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHH
Q 005908 103 SYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (670)
Q Consensus 103 ~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 170 (670)
.|...++... .+.|+|+|+||+|+...... . .+........++ .+|+++|++++.++++.+..
T Consensus 191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred -HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence 2455555433 27899999999999865443 1 121222222222 36999999999988876544
No 349
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.48 E-value=1.7e-13 Score=155.07 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=89.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc----------------ccceEEEEEEcCCCceEEEEEecCChhh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEG 484 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~----------------~~~~~~~~vd~~g~~~~~~i~d~~g~~~ 484 (670)
....+|+|+|++|+|||||+++|++........++. +..+......+......+.+||++|+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999999544322111111 1112122222222457788999999988
Q ss_pred HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC
Q 005908 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (670)
Q Consensus 485 ~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (670)
+... ...+++.+|++++|+|++++...+ ...++..+... ++|+++|+||+|+. ....+..+++.+.++
T Consensus 87 f~~~--~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~------~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVGE--IRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL------GLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp GHHH--HHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred hHHH--HHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc------cCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 8766 778899999999999999886644 34555555543 69999999999987 333444444544433
No 350
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.47 E-value=5.3e-14 Score=147.74 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=94.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCC----CC----------------------CeEe--------------
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL-------------- 50 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~----~~----------------------~~~~-------------- 50 (670)
...+|+|+|++|||||||+|+|++..+.+...+. .. .+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998874321111 00 0000
Q ss_pred ---C--------Cc-ccCCceeEEEEeCCCCcc-------------chhhhHHHhccCCEEEE-EEECCChhhHHHHHHH
Q 005908 51 ---P--------PD-FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVL-TYACNQQSTLSRLSSY 104 (670)
Q Consensus 51 ---~--------~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~-v~d~~~~~s~~~~~~~ 104 (670)
. .. .......+.||||||... +..+...+++.++.+++ |+|.+....-.... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 0 00 011246799999999642 23455577776665554 55654422211211 1
Q ss_pred HHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhH--HHHHhccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP--IMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 105 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~ 174 (670)
++..+... +.|+++|+||+|+.+.... ..+.++. +....+ ..+++++||++|.|++++++.+.+.
T Consensus 189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~-~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTC-EEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCC-ceEEEeCCcccccccccHHHHHHHH
Confidence 44444433 7899999999999764331 1111110 000011 1257889999999999999998763
No 351
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.47 E-value=1.3e-13 Score=141.27 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=92.2
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 539 (670)
+...+.+||++|++.++++ +..++++++++|+|+|++ +..++.+...|+..+....... +.|++++
T Consensus 165 ~~v~l~iwDtgGQe~~R~~--w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~--~~~iiL~ 240 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRK--WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILF 240 (327)
T ss_dssp TTEEEEEEEECCSHHHHTT--GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT--TCEEEEE
T ss_pred eceeeEEEEcCCchhHHHH--HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC--CceEEEE
Confidence 3477889999999999998 999999999999999665 6677888888888877543323 6999999
Q ss_pred EeCCCCCCCc-----------------ccHHHHHHHHH----------HhCCCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 540 ASKDDLKPYT-----------------MAVQDSARVTQ----------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 540 ~NK~Dl~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
+||+|+..++ ...+++.++.. ..++ .+++|||+++ ||+.+|+.+.+.+.+.
T Consensus 241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9999986533 23555655532 2222 3789999999 9999999999988654
Q ss_pred C
Q 005908 592 H 592 (670)
Q Consensus 592 ~ 592 (670)
.
T Consensus 320 ~ 320 (327)
T 3ohm_A 320 N 320 (327)
T ss_dssp T
T ss_pred h
Confidence 4
No 352
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.47 E-value=2.3e-13 Score=149.56 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=77.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC---------------C-----CCcccc--eEEEEEEcCCCceEEEEEec
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY---------------A-----PTTGEQ--YAVNVVDQPGGNKKTLILQE 479 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~---------------~-----~t~~~~--~~~~~vd~~g~~~~~~i~d~ 479 (670)
...+|+|+|.+|+|||||+++|++....... + .+.+.. .....+.. ....+.+||+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEEC
Confidence 4589999999999999999999964211100 0 000111 11122333 3467889999
Q ss_pred CChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
+|+..+... ...+++.+|++|+|+|++++...+ ...++..+... ++|+++|+||+|+...
T Consensus 90 PG~~df~~~--~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~------~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSED--TYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLR------DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTT------TCCEEEEEECTTSCCS
T ss_pred CCChhHHHH--HHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHc------CCCEEEEEcCcCCccc
Confidence 999887765 677899999999999999875532 23333333222 6999999999999763
No 353
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=5.4e-13 Score=141.54 Aligned_cols=164 Identities=21% Similarity=0.147 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhh----Hhhhh-chHhhcccc
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKIL-SNKEALASC 498 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~~-~~~~~~~~a 498 (670)
-.|+|+|.+|||||||++++.+........+.++.......+..+ ....+.++|++|... ...+. .....+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999875433222322222334455555 345677899998632 11120 022345679
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-Ch
Q 005908 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (670)
Q Consensus 499 d~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v 577 (670)
+.+++|+|++ ...+..+..+.+++..+...- ...|.++|+||+|+... ...+...+..+..+.. ++.+||+++ |+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~g~gi 312 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALTGAGL 312 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTTCTTH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCCccCH
Confidence 9999999998 556777777777766543100 04899999999999874 2233334444444554 999999999 99
Q ss_pred HHHHHHHHHHHhCCC
Q 005908 578 NNVFSRIIWAAEHPH 592 (670)
Q Consensus 578 ~~l~~~l~~~~~~~~ 592 (670)
+++++.|.+.+....
T Consensus 313 ~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 313 PALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999986544
No 354
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.45 E-value=7.5e-14 Score=151.80 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=90.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------CCCC-------CCcccceEEEEEEcCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERP--FS----------------------ENYA-------PTTGEQYAVNVVDQPG 469 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~----------------------~~~~-------~t~~~~~~~~~vd~~g 469 (670)
+..++|+++|.+++|||||+++|+... +. ...+ ..++.+.....+.++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 456999999999999999999997521 11 0000 001111112234444
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASK 542 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~NK 542 (670)
...+.+||++|++.|... ....+..+|++|+|+|++++. +|+ +..+.+..+... ++| +|+|+||
T Consensus 120 -~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp~iivviNK 190 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVINK 190 (467)
T ss_dssp -SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEEC
T ss_pred -CeEEEEEECCCcHHHHHH--HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCCEEEEEEEC
Confidence 367889999999988776 677889999999999999872 222 122222222222 577 9999999
Q ss_pred CCCCCCc-------ccHHHHHHHHHHh-CCC-----CcEEeecccC-ChHHHH
Q 005908 543 DDLKPYT-------MAVQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 543 ~Dl~~~~-------~~~~~~~~~~~~~-~~~-----~~~~vSA~~g-~v~~l~ 581 (670)
+|+.... ....++.++++.+ ++. +++++||++| |+.+++
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9996421 1134566666666 542 5899999999 998765
No 355
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.7e-14 Score=160.92 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP 468 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------------------------~~t~~~~~~~~~vd~~ 468 (670)
.+..++|+|+|.+|+|||||+|+|++....... .+.++.+.....+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456799999999999999999999753211110 1112222222333333
Q ss_pred CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc---cH---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~~p-iilv~N 541 (670)
...+.+||++|++.|... +...+..+|++|+|+|++++. .+ ......+..+... ++| +|+|+|
T Consensus 254 --~~~i~iiDTPGh~~f~~~--~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviN 323 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISG--MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVN 323 (592)
T ss_dssp -------CCEEESSSEEEEE--CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEE
T ss_pred --CeEEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEe
Confidence 356778999999887765 677889999999999998743 11 1122223333332 565 999999
Q ss_pred CCCCCCCc-cc----HHHHHHHH-HHhCCC----CcEEeecccC-ChH--------------HHHHHHHHHH
Q 005908 542 KDDLKPYT-MA----VQDSARVT-QELGIE----PPIPVSMKSK-DLN--------------NVFSRIIWAA 588 (670)
Q Consensus 542 K~Dl~~~~-~~----~~~~~~~~-~~~~~~----~~~~vSA~~g-~v~--------------~l~~~l~~~~ 588 (670)
|+|+.+.. .. ..++..+. +.+++. +++++||++| |+. .|++.|.+.+
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 99997621 11 23333333 444653 5899999999 998 6777776643
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=1.6e-12 Score=130.57 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhc----
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL---- 495 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~---- 495 (670)
...++|+++|.+|||||||+|+|++..+..... ++++.......+... ...+.+|||+|.+.+... ...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~--~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYV--NHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEE--CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccc--hHHHHHHHH
Confidence 357999999999999999999999988644333 222222333344444 357889999998665443 11222
Q ss_pred -----ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 496 -----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 496 -----~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
..+|++++|+|++..........|+..+....... ...|+++|+||+|+..
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence 37899999999976542233356777776554221 0249999999999964
No 357
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.44 E-value=7.4e-13 Score=140.49 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCCCCCeEeCCcccCC-ceeEEEEeCCCCccch----hhh---HHHhccC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKL---NEELKRA 83 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~---~~~~~~a 83 (670)
-.|+|+|++|||||||+++|++.... ..++.+....... .+... ...+.+|||||+.+.. .+. ...+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 45899999999999999999887521 1122211111111 12222 3679999999985321 121 2345679
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccCCeEEEeCccc
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 160 (670)
+.+++|+|++ ...+.++. .|.+.+..+. .+.|.++|+||+|+... . .. +.+.......+ .+++.+||++
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~-~~-~~l~~~l~~~g--~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--E-AV-KALADALAREG--LAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H-HH-HHHHHHHHTTT--SCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--H-HH-HHHHHHHHhcC--CeEEEEECCC
Confidence 9999999998 56666665 3666665543 26899999999998753 1 11 22222223222 2699999999
Q ss_pred CCCchHHHHHHHHHHcCCC
Q 005908 161 MIQVPDVFYYAQKAVLHPT 179 (670)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~ 179 (670)
+.||+++++.+.+.+....
T Consensus 309 g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSC
T ss_pred ccCHHHHHHHHHHHHHhcc
Confidence 9999999999999886544
No 358
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.44 E-value=4.5e-14 Score=144.49 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=84.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCCCCCeEeCC--cccCCceeEEEEeCCCC-------ccc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATE-SVPEKV--------PPVHAPTRLPP--DFYPDRVPVTIIDTSSS-------LEN 72 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~-~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~-------~~~ 72 (670)
-.++|+|+|++|||||||+++|.+. .+.... .++.....+.. ........+.+|||+|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999999876 333221 01111011111 11233567999999998 444
Q ss_pred hhhhH-------HHhccC-------------CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCC
Q 005908 73 KGKLN-------EELKRA-------------DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (670)
Q Consensus 73 ~~~~~-------~~~~~a-------------d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 132 (670)
..... .++++. ++++++.+.+. .+++.... ..++....+.|+++|+||+|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44443 444433 33444444322 23444332 33344344689999999999976433
Q ss_pred ccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
.....+.+..+++..+ .+++++||++| |++++|..+.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~--~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 RERLKKRILDEIEEHN--IKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC--CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2112345566666665 37999999999 9999999999887644
No 359
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.43 E-value=8.5e-13 Score=149.94 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=81.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------------CCCCCcccceEEEEEEcCCCceEEEEEecC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE--------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~--------------------~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~ 480 (670)
.+..+|+|+|.+|+|||||+++|+...... ....|+.. ....+.. ....+.+||++
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~--~~~~~~~--~~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA--AVTTCFW--KDHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C--CEEEEEE--TTEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc--ceEEEEE--CCeEEEEEECc
Confidence 456899999999999999999998421110 00012111 1122333 34678899999
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
|+..+... ...+++.+|++|+|+|++++.+++....|.. +... ++|+++|+||+|+..
T Consensus 86 G~~df~~~--~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~------~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIE--VERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY------KVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT------TCCEEEEEECTTSTT
T ss_pred CccchHHH--HHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc------CCCEEEEEECCCccc
Confidence 99887766 7788999999999999999988776665543 4433 699999999999975
No 360
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.43 E-value=4.7e-13 Score=137.52 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=93.3
Q ss_pred EEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCC
Q 005908 462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSG 531 (670)
Q Consensus 462 ~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~ 531 (670)
...++. +...+.+||++|++.++.+ +..++++++++|+|+|++ +..++.+...|+..+.......
T Consensus 153 ~~~~~~--~~v~l~iwDtaGQe~~R~~--w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~- 227 (340)
T 4fid_A 153 EYDFVV--KDIPFHLIDVGGQRSERKX--WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK- 227 (340)
T ss_dssp EEEEES--SSCEEEEEECCSCHHHHHH--HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT-
T ss_pred EEEEEe--eeeeeccccCCCccccccc--HHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC-
Confidence 334444 3467889999999999998 999999999999999998 6788998889988887654333
Q ss_pred CCCcEEEEEeCCCCCCCcc----------------cHHHHHHH-HHHh-------------------------CCCCcEE
Q 005908 532 YGVPCLLIASKDDLKPYTM----------------AVQDSARV-TQEL-------------------------GIEPPIP 569 (670)
Q Consensus 532 ~~~piilv~NK~Dl~~~~~----------------~~~~~~~~-~~~~-------------------------~~~~~~~ 569 (670)
+.|++|++||+|+..++. ..+++.++ .+++ .-..+++
T Consensus 228 -~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 228 -GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp -TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred -CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 699999999999864221 12333333 3333 1123789
Q ss_pred eecccC-ChHHHHHHHHHHHhC
Q 005908 570 VSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
|||+++ ||..+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 999999 999999999988764
No 361
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.41 E-value=1.4e-12 Score=137.15 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=90.3
Q ss_pred ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC----------cccHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 005908 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540 (670)
Q Consensus 471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 540 (670)
...+.+||++|++.++.+ +..++++++++|+|||+++ ..+|.....|+..+....... +.|++||+
T Consensus 216 ~v~l~iwDtaGQe~~r~~--w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~--~~piiLvg 291 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRK--WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR--TISVILFL 291 (402)
T ss_dssp TEEEEEEEECCSGGGGGG--GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS--SCCEEEEE
T ss_pred Cccceecccchhhhhhhh--hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC--CCeEEEEE
Confidence 367889999999999998 8999999999999999999 889999999999987653322 69999999
Q ss_pred eCCCCCCCcc-------------------------------cHHHHHHHH-----HHh-------CCCCcEEeecccC-C
Q 005908 541 SKDDLKPYTM-------------------------------AVQDSARVT-----QEL-------GIEPPIPVSMKSK-D 576 (670)
Q Consensus 541 NK~Dl~~~~~-------------------------------~~~~~~~~~-----~~~-------~~~~~~~vSA~~g-~ 576 (670)
||+|+...+. ..+++..++ +.. ....+++|||+++ |
T Consensus 292 NK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~n 371 (402)
T 1azs_C 292 NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 371 (402)
T ss_dssp ECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHH
T ss_pred EChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcC
Confidence 9999854221 023444443 221 1113679999999 9
Q ss_pred hHHHHHHHHHHHh
Q 005908 577 LNNVFSRIIWAAE 589 (670)
Q Consensus 577 v~~l~~~l~~~~~ 589 (670)
|.++|..+.+.+.
T Consensus 372 V~~vF~~v~~~I~ 384 (402)
T 1azs_C 372 IRRVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 362
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.40 E-value=1.9e-13 Score=144.08 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=97.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCc-ccceEEEE------------------------------------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-GEQYAVNV------------------------------------ 464 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~-~~~~~~~~------------------------------------ 464 (670)
..++|+|+|++|||||||+|+|++..+.....++. +....+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34699999999999999999999988754433221 11111111
Q ss_pred -----------------EEcCCCceEEEEEecCChhhH-------------hhhhchHhhcccccEEEEEEECCCcccHH
Q 005908 465 -----------------VDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCDVTIFVYDSSDEYSWK 514 (670)
Q Consensus 465 -----------------vd~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad~vllv~D~s~~~s~~ 514 (670)
+..+ ....+.+||++|...+ ..+ ...+++++|++|+|+|.++.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~--~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM--VRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH--HHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHH--HHHHhhcCCeEEEEeecccCCcCC
Confidence 1111 2335678999996554 334 678899999999999976543221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHH
Q 005908 515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR 583 (670)
Q Consensus 515 ~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~ 583 (670)
..|+..+..... . +.|+++|+||+|+.+.... ....+.+...++. +|+++|++++ ++++.+..
T Consensus 190 --~~~~~l~~~~~~-~--~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 --SDAIKISREVDP-S--GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp --CHHHHHHHHSCT-T--CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred --HHHHHHHHHhcc-c--CCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 233333333322 2 6899999999999864433 2223333333444 5999999999 88876544
No 363
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=8.5e-14 Score=147.51 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCC----------------------cccC-CceeEEEEeCCC
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPP----------------------DFYP-DRVPVTIIDTSS 68 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~i~Dt~G 68 (670)
+||+|+|.||||||||+|+|++... ..++|.+........ .+.. ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998872 223332211111000 0111 146899999999
Q ss_pred Cccc----hhhhH---HHhccCCEEEEEEECCCh
Q 005908 69 SLEN----KGKLN---EELKRADAVVLTYACNQQ 95 (670)
Q Consensus 69 ~~~~----~~~~~---~~~~~ad~ii~v~d~~~~ 95 (670)
+... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22223 357899999999999875
No 364
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.40 E-value=2e-12 Score=142.61 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=83.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCCCCCCCCe--E---eCCcccCCceeEEEEeCCCC
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESV-----------------PEKVPPVHAPT--R---LPPDFYPDRVPVTIIDTSSS 69 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-----------------~~~~~~~~~~~--~---~~~~~~~~~~~~~i~Dt~G~ 69 (670)
.=+|+|+|+.++|||||..+|+...- ..+........ + ....+.++++.++|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45799999999999999999962210 01111100000 0 12234577899999999999
Q ss_pred ccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 70 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
.+|.......++-+|++|+|+|+...-..+... .++...+. ++|+++++||+|....
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence 999999999999999999999998875555543 45666666 8999999999998654
No 365
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=3.3e-12 Score=128.95 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhc-----hHh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKE 493 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~-----~~~ 493 (670)
...++|+++|.+|||||||+|+|++..+..+.. +++.. .....++. ....+.+|||+|...+..+.. ...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEee--CCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence 457999999999999999999999988754433 23322 22222332 456788999999755432200 111
Q ss_pred --hcccccEEEEEEECCCcccHH-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc
Q 005908 494 --ALASCDVTIFVYDSSDEYSWK-RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 494 --~~~~ad~vllv~D~s~~~s~~-~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~ 549 (670)
..+.+|++++|+|++.. ++. ....|+..+....... ...|+++|+||+|+....
T Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCcC
Confidence 23579999999998753 333 3346777776543210 026999999999997643
No 366
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.39 E-value=1.4e-13 Score=140.97 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=106.7
Q ss_pred HHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcc-cHHH
Q 005908 438 ALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKR 515 (670)
Q Consensus 438 SLin~l~~~~~~-~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~-s~~~ 515 (670)
+|+++++.+.|. ..+.||+++.+... +..+ + ...+||+ ++++..+ +..+++++|++|+|||++++. ++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~-~--~~~iwD~--qer~~~l--~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDET-G--SGVIENV--LHRKNLL--TKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCS-S--SEEEEEE--CCCSCEE--TTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEE-EcCC-C--eEEEEEE--cccccee--eccccccCCEEEEEEeCCCCCCCHHH
Confidence 689999999988 77789999665533 2222 2 6778999 7788888 788999999999999999987 7888
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhC--CCCcEEeecccC-ChHHHHHHHHH
Q 005908 516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIW 586 (670)
Q Consensus 516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSA~~g-~v~~l~~~l~~ 586 (670)
+..|+..+... ++|+++|+||+|+.+... .++.+++++.++ .. ++++||++| |++++|+.+..
T Consensus 104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 104 IDKFLVLAEKN------ELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHT------TCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHC------CCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence 99999877653 699999999999986432 244667777776 54 999999999 99999987754
No 367
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.39 E-value=1.7e-12 Score=131.14 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=63.1
Q ss_pred EEeCCCCc-cchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhh
Q 005908 63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141 (670)
Q Consensus 63 i~Dt~G~~-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~ 141 (670)
|-..||+. .....+...+..+|+++.|+|+.++.+..+.. +.+.+ .++|+++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~--l~~~l----~~kp~ilVlNK~DL~~~~----~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADAA----VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCHH----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH--HHHHH----CCCCEEEEEECcccCCHH----HHHHHH
Confidence 44578865 34455668899999999999999987765310 11222 489999999999997521 111112
Q ss_pred HHHHHhccCCeEEEeCcccCCCchHHHHHHHH
Q 005908 142 PIMQQFREIETCVECSATTMIQVPDVFYYAQK 173 (670)
Q Consensus 142 ~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 173 (670)
.+....+ .+++.+||+++.|++++++.+.+
T Consensus 73 ~~~~~~g--~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 73 EHFENQG--IRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp HHHHTTT--CCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHhcC--CcEEEEECCCcccHHHHHHHHHH
Confidence 2222222 26899999999999998886544
No 368
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.39 E-value=1.7e-13 Score=143.82 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=93.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CC-----------------------ccc--------------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PT-----------------------TGE-------------- 458 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------~t-----------------------~~~-------------- 458 (670)
..++|+|+|.+|||||||+|+|++..+.+... |+ +..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999988753221 21 000
Q ss_pred ---------ceEEEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhccccc-EEEEEEECCCcccHHH
Q 005908 459 ---------QYAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCD-VTIFVYDSSDEYSWKR 515 (670)
Q Consensus 459 ---------~~~~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad-~vllv~D~s~~~s~~~ 515 (670)
...+. +..+ ....+.+||++|.. .+..+ ...++..++ ++++|.|++....-..
T Consensus 110 g~~~gi~~~~~~~~-i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiL~v~~a~~~~~~~~ 185 (353)
T 2x2e_A 110 GTNKGISPVPINLR-VYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSD 185 (353)
T ss_dssp TTTTCCCCCCEEEE-EEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHH--HHHHHTSTTEEEEEEEETTSCGGGCH
T ss_pred ccCCCcccCceEEE-EecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHH--HHHHHcCCCeEEEEEecCCCccchhH
Confidence 00011 1112 13457789999942 33444 455665554 5566667765422222
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc-HHHHHH--HHHHhCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSAR--VTQELGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
...++..+.. . +.|+++|+||+|+.+.... ....+. +...+++.+++++||++| |++++++.+.+.
T Consensus 186 ~~~i~~~~~~----~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 186 ALKVAKEVDP----Q--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHHHCT----T--CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCc----C--CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 2223333322 2 6899999999999864331 111110 000123335789999999 999999999773
No 369
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=144.28 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=80.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CC-------CCCCCeEeCCccc--CCceeEEEEeCCCCccch-------
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VP-------PVHAPTRLPPDFY--PDRVPVTIIDTSSSLENK------- 73 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~-------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~------- 73 (670)
-.++|+|+|++|||||||+|+|++..+... .. ++.....+...+. .....+.+|||+|+....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 457899999999999999999998876321 11 1111111222222 223478999999986531
Q ss_pred hhh------------------HHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCcc
Q 005908 74 GKL------------------NEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (670)
Q Consensus 74 ~~~------------------~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 134 (670)
... ..++.++++.+++|+.... .++......|+..+. .++|+|+|+||+|+...+.+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 110 1223455554444444332 344444434777664 378999999999997654431
Q ss_pred chhhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
...+.+...+...+ .+++++||+++.+++++|..+...++
T Consensus 187 ~~k~~i~~~~~~~~--i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 QFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHT--CCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHcC--CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 22244455555554 36899999999999998877766543
No 370
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=3.8e-13 Score=142.55 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-Ccc-cceEEEEE--Ec-----------------CCC-ceEEEEEecCC
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTG-EQYAVNVV--DQ-----------------PGG-NKKTLILQEIP 481 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-t~~-~~~~~~~v--d~-----------------~g~-~~~~~i~d~~g 481 (670)
++|+|+|.||||||||+|+|++........| ||. .......+ +. .+. ...+.+||++|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999999873222222 332 22222111 11 111 24678899999
Q ss_pred hhh----Hhhh-hchHhhcccccEEEEEEECCCc
Q 005908 482 EEG----VKKI-LSNKEALASCDVTIFVYDSSDE 510 (670)
Q Consensus 482 ~~~----~~~~-~~~~~~~~~ad~vllv~D~s~~ 510 (670)
... .+.+ .+...+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 2222 1123567999999999999875
No 371
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.39 E-value=2.8e-12 Score=145.77 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=81.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCC---CCCC-------------CcccceEEEEEEcCCCceEEEEEecCCh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSE---NYAP-------------TTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~---~~~~-------------t~~~~~~~~~vd~~g~~~~~~i~d~~g~ 482 (670)
.+..+|+|+|.+|+|||||+|+|++. .+.. +... .++.......+... ...+.+|||+|+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 45689999999999999999999952 2210 0000 00111111223333 467889999999
Q ss_pred hhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
..+... ...+++.+|++|+|+|++++.+.+....|. .+... +.|+++|+||+|+...
T Consensus 86 ~df~~~--~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVE--VERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHH--HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTTC
T ss_pred cchHHH--HHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc------CCCEEEEEECCCcccc
Confidence 877665 678889999999999999988877665553 34443 6999999999999763
No 372
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=5.2e-13 Score=136.58 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=84.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC--------CCCcccceEEEEEEcCCCceEEEEEecCCh-------hhH
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EGV 485 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~-~~~~~~--------~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~-------~~~ 485 (670)
-.++|+|+|++|||||||+|+|++. .+.... .++.........+..++....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999876 333221 112221111223333445567889999997 333
Q ss_pred hhhhc-----hHhhccc-------------ccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 486 KKILS-----NKEALAS-------------CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 486 ~~~~~-----~~~~~~~-------------ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
..+.. ...+++. +++++++.+.+.. +++.... ..+..... +.|+++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~~----~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIHN----KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHTT----TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHHh----cCCEEEEEEeCCCCC
Confidence 33310 0023322 3445555554331 2333321 22222221 579999999999986
Q ss_pred Cccc---HHHHHHHHHHhCCCCcEEeecccCChHHHHHHHHHHHhC
Q 005908 548 YTMA---VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEH 590 (670)
Q Consensus 548 ~~~~---~~~~~~~~~~~~~~~~~~vSA~~g~v~~l~~~l~~~~~~ 590 (670)
.+.. .+++.++++.+++. ++++||++||++++|+.+.+.+..
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIK-IYHLPDAESDEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCCCC---------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCe-EEecCCccccccHHHHHHHHHhhc
Confidence 4332 45777888888875 999999999999999999988754
No 373
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=1.5e-12 Score=133.34 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=78.6
Q ss_pred CCceeEEEEe-CCC-----CccchhhhHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 56 PDRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 56 ~~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
++.+.+.++| +.| ++++..+.+.+++++|++++|+|++++. ++..+. .|+..+... ++|+++|+||+|+.
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLL 123 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGC
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCC
Confidence 3445566665 323 5667777778999999999999999886 888766 588877764 89999999999997
Q ss_pred CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHHHH
Q 005908 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
+...+ ...+....+....+ .+++++||++|.|++++++
T Consensus 124 ~~~~v-~~~~~~~~~~~~~g--~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 124 NEEEK-KELERWISIYRDAG--YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp CHHHH-HHHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred Ccccc-HHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence 54321 11122334444444 3799999999999998776
No 374
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=8.8e-13 Score=140.00 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=80.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--------CCcccceEEEEEEcCCCceEEEEEecCChhhHh-------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------- 486 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~--------~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~------- 486 (670)
-.++|+|+|++|||||||+|+|++..+..... +|++.......+..++....+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 34899999999999999999999987642211 122211111122333344567889999864421
Q ss_pred hhh----------------chHhhcccccEEEEEEECCCc-ccHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCC
Q 005908 487 KIL----------------SNKEALASCDVTIFVYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (670)
Q Consensus 487 ~~~----------------~~~~~~~~ad~vllv~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~ 548 (670)
.+. -....+.++++.+++|+.... .++.... .|+..+.. +.|+|+|+||+|+...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-------TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-------cCcEEEEEEcccCccH
Confidence 110 012344555544444443322 2343333 56665531 5899999999999874
Q ss_pred ccc---HHHHHHHHHHhCCCCcEEeecccC-ChHHHHHHHHHHH
Q 005908 549 TMA---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (670)
Q Consensus 549 ~~~---~~~~~~~~~~~~~~~~~~vSA~~g-~v~~l~~~l~~~~ 588 (670)
+.. ...+.+.+...++. ++++||+++ +++++|..+...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-CCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhhC
Confidence 433 25667777788876 899999999 9999988887764
No 375
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.36 E-value=6.3e-12 Score=142.98 Aligned_cols=118 Identities=11% Similarity=-0.015 Sum_probs=81.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCC--CCC---CCCC-------------CcccceEEEEEEcC-----CCceEEEEE
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE---NYAP-------------TTGEQYAVNVVDQP-----GGNKKTLIL 477 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~---~~~~-------------t~~~~~~~~~vd~~-----g~~~~~~i~ 477 (670)
.+..+|+|+|..|+|||||+++|+... +.. +... .++.......+.+. +....+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997532 111 0000 00011111122222 234788899
Q ss_pred ecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 478 d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
||+|+..|... ...+++.+|++|+|+|++++.+.+....| ..+... ++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~--~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~------~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIE--VERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY------KVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHH--HHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc------CCCEEEEEeCCCccc
Confidence 99999887766 67888999999999999998775554444 333332 699999999999875
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.35 E-value=4.4e-13 Score=131.02 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=93.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC-------CCCCCC---------CCeEeCCc------c----------cCCc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-------KVPPVH---------APTRLPPD------F----------YPDR 58 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~-------~~~~~~---------~~~~~~~~------~----------~~~~ 58 (670)
+..+|+|+|.+|||||||+++|++..... ..++.. +....... . ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998652111 011100 00000000 0 2245
Q ss_pred eeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhh
Q 005908 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE 138 (670)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~ 138 (670)
..+.+|||+|+..... .+...++.+++|+|+++.... . | ...... +.|+++|+||+|+...... ...+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~---~-~~~~~~--~~~~iiv~NK~Dl~~~~~~-~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--V---E-KHPEIF--RVADLIVINKVALAEAVGA-DVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--H---H-HCHHHH--HTCSEEEEECGGGHHHHTC-CHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--h---h-hhhhhh--hcCCEEEEecccCCcchhh-HHHH
Confidence 6799999999521111 111357899999998775421 1 1 111222 5789999999998643211 1222
Q ss_pred hhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 139 VMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
+......++...+++++||++|.|++++++.+.+.+..
T Consensus 177 -~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 177 -MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp -HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred -HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 23333444333479999999999999999999987754
No 377
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=1.5e-12 Score=143.80 Aligned_cols=119 Identities=24% Similarity=0.235 Sum_probs=83.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCC----CCCCCCCCCeEe-CCcc--------------------c--C----C
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP----EKVPPVHAPTRL-PPDF--------------------Y--P----D 57 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~----~~~~~~~~~~~~-~~~~--------------------~--~----~ 57 (670)
.....+|+|+|.+|||||||+|+|++..+. ...+++.....+ .... . + .
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 446789999999999999999999998863 223333111111 1000 0 0 0
Q ss_pred c-----------eeEEEEeCCCCcc-----------chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 005908 58 R-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK 115 (670)
Q Consensus 58 ~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~ 115 (670)
+ ..+.||||||+.. +......+++.+|++|+|+|+++........ .|+..++.. +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence 0 3689999999875 4455667889999999999998754444443 377766654 6
Q ss_pred CCEEEEEeCCCCCCC
Q 005908 116 VPIIVAGCKLDLRGD 130 (670)
Q Consensus 116 ~pvilv~NK~Dl~~~ 130 (670)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999998753
No 378
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.35 E-value=6.8e-13 Score=137.99 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=87.9
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc--CCCCCEEEEEeC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 124 (670)
..+++.+|||+|++.+...+..++++++++|+|||++ +..++++... |+..+... .++.|+|||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 7889998885 66666542 358999999999
Q ss_pred CCCCCCCCc-cc------------------hhhhhhHH-HHHh-------------ccCCeEEEeCcccCCCchHHHHHH
Q 005908 125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA 171 (670)
Q Consensus 125 ~Dl~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~SA~~~~gi~~l~~~i 171 (670)
+|+..++.. .. ..+....+ .+++ +....+++|||+++.||+++|+.+
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 998543210 01 01222333 3322 112246899999999999999999
Q ss_pred HHHHc
Q 005908 172 QKAVL 176 (670)
Q Consensus 172 ~~~~~ 176 (670)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=5.2e-13 Score=140.17 Aligned_cols=106 Identities=13% Similarity=0.046 Sum_probs=71.8
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 136 (670)
.++.+.||||||... .....+..+|++|+|+|....+....+. ....++|+++|+||+|+......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~--- 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA--- 235 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH---
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH---
Confidence 568899999999643 2335568999999999987655443221 11124699999999998643211
Q ss_pred hhhhhHHHHH---hc-----cCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 137 EEVMGPIMQQ---FR-----EIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 137 ~~~~~~~~~~---~~-----~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
......+... ++ ...+++++||++|.||+++++.+.+.+.
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1122233222 21 1137999999999999999999988764
No 380
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.2e-11 Score=128.35 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCc---------------eEEEEEecCChhhHh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGVK 486 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g~~---------------~~~~i~d~~g~~~~~ 486 (670)
++|+|+|.||||||||+|+|++........| |..... ..+.+++.. ..+.+||++|.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999999774332222 222222 234555321 467889999975542
Q ss_pred ----hhh-chHhhcccccEEEEEEECCCc----------ccHHHHHHHHHHHH---------------------------
Q 005908 487 ----KIL-SNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVEVA--------------------------- 524 (670)
Q Consensus 487 ----~~~-~~~~~~~~ad~vllv~D~s~~----------~s~~~~~~~~~~i~--------------------------- 524 (670)
.+. ....+++.+|++++|+|+++. +.+.++..+..++.
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 221 134568999999999999862 23333332222210
Q ss_pred ---------HhcC---------------------CCCCCCcEEEEEeCCCCCC-CcccHHHHHHHHHHhCCCCcEEeecc
Q 005908 525 ---------RLGE---------------------DSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMK 573 (670)
Q Consensus 525 ---------~~~~---------------------~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSA~ 573 (670)
.... .....+|+++++||.|..- .+.....+.+++...+.. ++++||+
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~-~i~~sA~ 239 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV-VVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE-EEEECHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC-EEEechH
Confidence 0000 0011599999999999653 223366677788777765 9999987
Q ss_pred c
Q 005908 574 S 574 (670)
Q Consensus 574 ~ 574 (670)
.
T Consensus 240 ~ 240 (363)
T 1jal_A 240 I 240 (363)
T ss_dssp H
T ss_pred H
Confidence 5
No 381
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=2.7e-11 Score=125.53 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEe-CCcccCC---------------ceeEEEEeCCCCccchh
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRL-PPDFYPD---------------RVPVTIIDTSSSLENKG 74 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 74 (670)
.++|+|+|.||||||||+|+|++..+ ..++|.+...... ...+... ...+.+|||||+.++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 37999999999999999999998773 2223321111110 0111110 25799999999986532
Q ss_pred -------hhHHHhccCCEEEEEEECCC
Q 005908 75 -------KLNEELKRADAVVLTYACNQ 94 (670)
Q Consensus 75 -------~~~~~~~~ad~ii~v~d~~~ 94 (670)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22356899999999999986
No 382
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.31 E-value=4.9e-12 Score=142.45 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=100.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC--eEe-------------------------------------
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRL------------------------------------- 50 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~--~~~------------------------------------- 50 (670)
..-.+|+|+|.+++|||||+|+|++..+.+...+..+. ..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35579999999999999999999998763221111000 000
Q ss_pred ------------CCc-ccCCceeEEEEeCCCCccc-------------hhhhHHHh-ccCCEEEEEEECCChhhHHHHHH
Q 005908 51 ------------PPD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEEL-KRADAVVLTYACNQQSTLSRLSS 103 (670)
Q Consensus 51 ------------~~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~-~~ad~ii~v~d~~~~~s~~~~~~ 103 (670)
... .......+.|+||||.... ......++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 000 0012335889999997641 12233444 5789999999998754333322
Q ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHH-Hh----ccCCeEEEeCcccCCCchHHHHHHHHH
Q 005908 104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF----REIETCVECSATTMIQVPDVFYYAQKA 174 (670)
Q Consensus 104 ~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~SA~~~~gi~~l~~~i~~~ 174 (670)
.++..+... +.|+|+|+||+|+.+.... .. .+.. .. ....+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~~--~~----~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--AR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTT--CSSEEEEEECTTSSCTTCC--SH----HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEeCcccCCcchh--hH----HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 256666554 7999999999999865432 11 1111 11 012257889999999999999998874
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.6e-12 Score=126.99 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=96.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC------CCCCcc--------cceEEEEEEcCC----------------Cc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN------YAPTTG--------EQYAVNVVDQPG----------------GN 471 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------~~~t~~--------~~~~~~~vd~~g----------------~~ 471 (670)
...+|+|+|.+|||||||+++|++...... .++.++ .......++.+| ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999987522110 111110 012233344432 12
Q ss_pred eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-c
Q 005908 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-M 550 (670)
Q Consensus 472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-~ 550 (670)
..+.+||++|...... .+...++.+++|+|+++.... ...+.. .. +.|+++|+||+|+.+.. .
T Consensus 109 ~d~iiidt~G~~~~~~-----~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~------~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV-----DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF------RVADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSGGG-----GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH------HTCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCCCc-----hhccccCcEEEEEeCCCcchh--hhhhhh---hh------hcCCEEEEecccCCcchhh
Confidence 3567888888411000 111357889999999876431 111111 11 48899999999986532 2
Q ss_pred cHHHHHHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhCC
Q 005908 551 AVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (670)
Q Consensus 551 ~~~~~~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~~ 591 (670)
..+...+..+.++ ..+++++||++| |++++++.+.+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 3455555555554 236899999999 9999999999987653
No 384
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=136.57 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=88.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC------C--CCCCCCCCC-------------------C---------------Ce
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATE------S--VPEKVPPVH-------------------A---------------PT 48 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~------~--~~~~~~~~~-------------------~---------------~~ 48 (670)
....|+|+|.||||||||+|+|++. + +....|+.. . .+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999852 1 000001000 0 00
Q ss_pred E--eC--CcccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeC
Q 005908 49 R--LP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (670)
Q Consensus 49 ~--~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 124 (670)
+ .. ..+...++.+.++||+|.... .......+|++++|+|++.......+. ..+ ...|.++|+||
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK 221 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTK 221 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEee
Confidence 0 00 001235678999999996432 234568999999999987654322221 111 15688999999
Q ss_pred CCCCCCCCccchhhhhhHHHHHhc--------cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 125 LDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
+|+.+... .......+...+. ...+++.+||++|.|++++++.|.+.+
T Consensus 222 ~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 222 SDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 99853211 0111222222111 013689999999999999999998865
No 385
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=7.4e-12 Score=125.71 Aligned_cols=167 Identities=19% Similarity=0.118 Sum_probs=97.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHH-----cCCC--CCCCCCCCC-------------CeE--eCCcc----------
Q 005908 7 SSSRTGVRVVVVGDRGTGKSSLIAAAA-----TESV--PEKVPPVHA-------------PTR--LPPDF---------- 54 (670)
Q Consensus 7 ~~~~~~~kI~ivG~~~vGKSSLi~~l~-----~~~~--~~~~~~~~~-------------~~~--~~~~~---------- 54 (670)
...++...++++|.+|||||||++.|. +.+. ....+.... ... .....
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY 88 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecH
Confidence 345667889999999999999999998 4441 111111000 000 00000
Q ss_pred ----------------cCCceeEEEEeCCCCccchhhhH------HHhccCCEEEEEEECCChhhHHHHHHHH---HHHH
Q 005908 55 ----------------YPDRVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYW---LPEL 109 (670)
Q Consensus 55 ----------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~~~~---~~~l 109 (670)
....+.+.||||||+.+...... ..+.. +++++++|.....+.......+ ....
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 01235899999999875433221 24556 8999999876543333322111 1112
Q ss_pred HhcCCCCCEEEEEeCCCCCCCCCccchhhh---hh----H-----------------HHHHhccCCeEEEeCcccCCCch
Q 005908 110 RRLEIKVPIIVAGCKLDLRGDHNATSLEEV---MG----P-----------------IMQQFREIETCVECSATTMIQVP 165 (670)
Q Consensus 110 ~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~---~~----~-----------------~~~~~~~~~~~~~~SA~~~~gi~ 165 (670)
... ++|+++|+||+|+..........+. .. . +...++...+++++||++|.|++
T Consensus 168 ~~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LRL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred ccc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 222 7899999999998753211000110 01 1 12333332368999999999999
Q ss_pred HHHHHHHHHHc
Q 005908 166 DVFYYAQKAVL 176 (670)
Q Consensus 166 ~l~~~i~~~~~ 176 (670)
++++++.+.+.
T Consensus 246 ~l~~~i~~~~~ 256 (262)
T 1yrb_A 246 DLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 386
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.29 E-value=2.8e-12 Score=133.87 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=84.1
Q ss_pred cCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHh--cCCCCCEEEEE
Q 005908 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRR--LEIKVPIIVAG 122 (670)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~--~~~~~pvilv~ 122 (670)
..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++++... |+..+.. ...++|+|||+
T Consensus 197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEE
Confidence 3457899999999999999999999999999999999999 788998875 6666543 23589999999
Q ss_pred eCCCCCCCC---------------C-ccchhhhhhHHHHHh--------ccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 123 CKLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 123 NK~Dl~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
||+|+..++ . + +.++....+...| .....+++|||+++.||+++|+.+.+.+.
T Consensus 276 NK~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 276 NKTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp ECHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999986321 1 2 3333332222221 11236899999999999999999988764
No 387
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=2.5e-11 Score=136.67 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=99.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CCcccceE--------------------------------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYA-------------------------------------- 461 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~t~~~~~~-------------------------------------- 461 (670)
...++|+|+|.+|+|||||+|+|++..+.+... ++|+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345899999999999999999999988743332 22221111
Q ss_pred ------------EEEEEcCCCceEEEEEecCChh-------------hHhhhhchHhhc-ccccEEEEEEECCCcccHHH
Q 005908 462 ------------VNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEAL-ASCDVTIFVYDSSDEYSWKR 515 (670)
Q Consensus 462 ------------~~~vd~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~-~~ad~vllv~D~s~~~s~~~ 515 (670)
...+..| ....+.++|++|-. ....+ ...++ ..+|++++|+|+++...-.+
T Consensus 129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~l--v~~yi~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHH--HHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHH--HHHHHhcCCcEEEEEEcCCCCcchhH
Confidence 1112223 22345678888832 22222 23333 67999999999987644333
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHH----hCCCCcEEeecccC-ChHHHHHHHHHH
Q 005908 516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (670)
Q Consensus 516 ~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g-~v~~l~~~l~~~ 587 (670)
...++..+... +.|+++|+||+|+.+.......... .+. +++.+++.+||++| |+++|++.+.+.
T Consensus 206 ~l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 206 ALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33444444332 6999999999999875433222111 011 23346889999999 999999999873
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.28 E-value=7.5e-12 Score=130.71 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=87.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC------CCC-CCCCCCcc-------------------cceEEEEEE--------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTG-------------------EQYAVNVVD-------- 466 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~------~~~-~~~~~t~~-------------------~~~~~~~vd-------- 466 (670)
.....|+|+|.||||||||+|+|++. ... ...++++. ....+....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999962 111 11111111 001110000
Q ss_pred c----------CCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE
Q 005908 467 Q----------PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (670)
Q Consensus 467 ~----------~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi 536 (670)
+ ......+.++||+|.... .......+|++++|+|++++...+.+.. .+ . ..|.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~-----~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l-----~~~~ 215 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS-----EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I-----EMAD 215 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C-----HHHHHTTCSEEEEEECCC------------------C-----CSCS
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh-----hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H-----hcCC
Confidence 0 002235677999985211 1234578999999999987643221111 11 1 4688
Q ss_pred EEEEeCCCCCCCcccHHHHHHHHHHhC---------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 537 LLIASKDDLKPYTMAVQDSARVTQELG---------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 537 ilv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
++|+||+|+.+..........+...+. .++++.+||++| |++++++.|.+.+.
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999998752211122333333221 245899999999 99999999998764
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.28 E-value=6.8e-12 Score=131.64 Aligned_cols=155 Identities=11% Similarity=0.130 Sum_probs=95.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCC------CCC-CCCCCccc-----------------ceEEEEEEcCC------
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERP------FSE-NYAPTTGE-----------------QYAVNVVDQPG------ 469 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~------~~~-~~~~t~~~-----------------~~~~~~vd~~g------ 469 (670)
....++|+|+|.+|||||||+++|...- ... ..++.... ...+.....++
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3456899999999999999999996321 100 00110000 00011111111
Q ss_pred --------------CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc
Q 005908 470 --------------GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535 (670)
Q Consensus 470 --------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p 535 (670)
....+.++||+|.... ....+..+|++++|+|.+..+.++.+.. .+ .+.|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~--------~~~p 219 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS-----EVAVANMVDTFVLLTLARTGDQLQGIKK---GV--------LELA 219 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH-----HHHHHTTCSEEEEEEESSTTCTTTTCCT---TS--------GGGC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-----HHHHHHhCCEEEEEECCCCCccHHHHHH---hH--------hhcC
Confidence 2356778999984321 2234588999999999887654322221 01 0479
Q ss_pred EEEEEeCCCCCCCcccHHHHHHHHHH---h-----C-CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 536 CLLIASKDDLKPYTMAVQDSARVTQE---L-----G-IEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 536 iilv~NK~Dl~~~~~~~~~~~~~~~~---~-----~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+++|+||+|+.+.........++... . + ..|++++||++| |++++++.|.+.+..
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999997533322333333333 2 2 246999999999 999999999988753
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.28 E-value=8.6e-14 Score=136.62 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCCCCCCc-ccHHHHHHHHHHhC-CCCcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 533 GVPCLLIASKDDLKPYT-MAVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 533 ~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+.|.++|+||+|+.+.. ...+...++++.++ ..+++++||++| |++++|+.+.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 47889999999987532 23555666666654 236999999999 999999999887753
No 391
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.28 E-value=6.4e-12 Score=130.74 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=96.5
Q ss_pred EEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC----------cccHHHHHHHHHHHHHhcCCCC
Q 005908 462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG 531 (670)
Q Consensus 462 ~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~ 531 (670)
...+... ...+.+||++|++.++.+ +..++++++++|+|+|+++ ..++.+...|+..+.......
T Consensus 185 ~~~~~~~--~~~l~iwDt~GQe~~r~~--w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~- 259 (353)
T 1cip_A 185 ETHFTFK--DLHFKMFDVGGQRSERKK--WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT- 259 (353)
T ss_dssp EEEEEET--TEEEEEEEECCSGGGGGG--GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred EEEEeeC--CeeEEEEeCCCchhhhHH--HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc-
Confidence 3444443 577889999999999998 8999999999999999999 567888888988887643222
Q ss_pred CCCcEEEEEeCCCCCCCc----------------ccHHHHHHHHHH-----------hCCCCcEEeecccC-ChHHHHHH
Q 005908 532 YGVPCLLIASKDDLKPYT----------------MAVQDSARVTQE-----------LGIEPPIPVSMKSK-DLNNVFSR 583 (670)
Q Consensus 532 ~~~piilv~NK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSA~~g-~v~~l~~~ 583 (670)
+.|+||++||+|+...+ ...+++.+++.. .++ .+++|||++| ||.++|++
T Consensus 260 -~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 260 -DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp -TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHH
T ss_pred -CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHH
Confidence 69999999999985322 335667777663 223 4899999999 99999999
Q ss_pred HHHHHhC
Q 005908 584 IIWAAEH 590 (670)
Q Consensus 584 l~~~~~~ 590 (670)
+.+.+..
T Consensus 338 v~~~i~~ 344 (353)
T 1cip_A 338 VTDVIIK 344 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 392
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.27 E-value=3.7e-12 Score=133.91 Aligned_cols=120 Identities=12% Similarity=0.089 Sum_probs=90.4
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc--CCCCCEEEEEe
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~N 123 (670)
.+++.+.+|||+|++.+...+..++++++++|||||+++ ..++++... |+..+... .+++|+|||+|
T Consensus 214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEE
T ss_pred cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 356899999999999999999999999999999999999 899999885 77777553 46899999999
Q ss_pred CCCCCCCCC---ccc-------------------------hhhhhhHH-----HHHh-----c-cCCeEEEeCcccCCCc
Q 005908 124 KLDLRGDHN---ATS-------------------------LEEVMGPI-----MQQF-----R-EIETCVECSATTMIQV 164 (670)
Q Consensus 124 K~Dl~~~~~---~~~-------------------------~~~~~~~~-----~~~~-----~-~~~~~~~~SA~~~~gi 164 (670)
|+|+...+. +.. ..+....+ +... + ....+++|||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999854321 100 01122222 1111 0 1124789999999999
Q ss_pred hHHHHHHHHHHc
Q 005908 165 PDVFYYAQKAVL 176 (670)
Q Consensus 165 ~~l~~~i~~~~~ 176 (670)
+++|+.+.+.+.
T Consensus 373 ~~vF~~v~~~I~ 384 (402)
T 1azs_C 373 RRVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 393
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.27 E-value=4.8e-12 Score=146.75 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=83.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--CCCCC---------------CC-CCCCeEeCCc--------------ccCC
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV---------------PP-VHAPTRLPPD--------------FYPD 57 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--~~~~~---------------~~-~~~~~~~~~~--------------~~~~ 57 (670)
.+..+|+|+|++|+|||||+++|+... +.... .+ +......... .+..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345799999999999999999998642 11000 00 0000001111 1234
Q ss_pred ceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
++.++||||||+.+|...+..+++.+|++|+|+|+++..+++... .|... ... ++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~-~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQA-LGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHH-HHT--TCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-HHc--CCCeEEEEECCCcc
Confidence 788999999999999999999999999999999999988887764 35433 333 78999999999986
No 394
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.27 E-value=4.3e-12 Score=142.99 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=83.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCC-----CCCCCCC-----------CeEeCCcccCCceeEEEEeCCCCccchhh
Q 005908 14 RVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPVHA-----------PTRLPPDFYPDRVPVTIIDTSSSLENKGK 75 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~--~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (670)
+|+|+|+.++|||||..+|+... +.. ...++.+ .......+.++++.++|+||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997322 111 0011110 01123445678899999999999999999
Q ss_pred hHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 76 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
....++-+|++|+|+|+...-..+.. ..++...+. ++|.|+++||+|....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence 99999999999999999876444433 355566666 7999999999998654
No 395
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=2.7e-12 Score=133.80 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccc
Q 005908 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 135 (670)
..++.+.||||||...... ...+.+|++++|+|.+.......+. .. .. ++|+++|+||+|+.....
T Consensus 146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~--~~--~~p~ivv~NK~Dl~~~~~--- 211 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KG--LM--EVADLIVINKDDGDNHTN--- 211 (341)
T ss_dssp HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HH--HH--HHCSEEEECCCCTTCHHH---
T ss_pred ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hh--hh--cccCEEEEECCCCCChHH---
Confidence 3467899999999765432 3568999999999987553322111 01 11 468899999999864311
Q ss_pred hhhhhhHHHH---Hhcc-----CCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 136 ~~~~~~~~~~---~~~~-----~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
.......+.. .++. ..+++++||++|.|++++++.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111122222 2221 236899999999999999999988654
No 396
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.25 E-value=7.8e-11 Score=122.85 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=75.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH----hh-hhchHhhcc
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK-ILSNKEALA 496 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~----~~-~~~~~~~~~ 496 (670)
...+|+|||.||||||||+|+|++........|.++.+.....+.++| ..+.++|++|-..- .. ..+....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 457999999999999999999999775544445444334445566663 45677888884211 11 122456779
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 005908 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545 (670)
Q Consensus 497 ~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl 545 (670)
.||++++|+|++++. ........++......- ..+|.+++.||+|.
T Consensus 149 ~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 149 TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRL-NKTPPDILIKKKEK 194 (376)
T ss_dssp HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred hcCccccccccCccH--HHHHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence 999999999999873 33333334443321100 13566667777775
No 397
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.23 E-value=1.4e-11 Score=136.21 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=82.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCC--CCC-CCCcccceEEEE---------------------------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENY-APTTGEQYAVNV--------------------------------- 464 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~-~~t~~~~~~~~~--------------------------------- 464 (670)
...++|+|+|.+|||||||+|+|++..+. .+. .+++.....+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998875 222 243321111000
Q ss_pred ---EEcCCC-ceEEEEEecCChhh-----------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCC
Q 005908 465 ---VDQPGG-NKKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED 529 (670)
Q Consensus 465 ---vd~~g~-~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~ 529 (670)
+.+++. ...+.+|||+|... +..+ ...++..+|++|+|+|+++.........++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~--~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAV--LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHH--HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHH--HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 000000 02467899999753 3344 566789999999999998864556666666665432
Q ss_pred CCCCCcEEEEEeCCCCCCCc
Q 005908 530 SGYGVPCLLIASKDDLKPYT 549 (670)
Q Consensus 530 ~~~~~piilv~NK~Dl~~~~ 549 (670)
+.|+++|+||+|+....
T Consensus 218 ---~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ---GGGEEEEEECGGGSCHH
T ss_pred ---CCCEEEEEECCCccCHH
Confidence 58999999999998743
No 398
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.22 E-value=1.4e-11 Score=128.08 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=89.5
Q ss_pred CceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECC----------CcccHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 005908 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539 (670)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 539 (670)
+...+.+||++|++.++.+ +..++++++++|+|||++ +..+|++...|+..+....... +.|++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~~piiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--KTSFMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--SCEEEEE
T ss_pred cceeeEEEECCCchhhhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--CCeEEEE
Confidence 4678889999999999998 899999999999999998 7789999999998887643222 6999999
Q ss_pred EeCCCCCCCcc----------------------cHHHHHHHHHH-h-------------CCC-CcEEeecccC-ChHHHH
Q 005908 540 ASKDDLKPYTM----------------------AVQDSARVTQE-L-------------GIE-PPIPVSMKSK-DLNNVF 581 (670)
Q Consensus 540 ~NK~Dl~~~~~----------------------~~~~~~~~~~~-~-------------~~~-~~~~vSA~~g-~v~~l~ 581 (670)
+||+|+..++. ..+++.+++.. + +.. .+++|||+++ ||.++|
T Consensus 257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 99999854221 13455555432 1 111 3589999999 999999
Q ss_pred HHHHHHHh
Q 005908 582 SRIIWAAE 589 (670)
Q Consensus 582 ~~l~~~~~ 589 (670)
+++.+.+.
T Consensus 337 ~~v~~~I~ 344 (354)
T 2xtz_A 337 KLVDETLR 344 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988775
No 399
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.21 E-value=6.4e-11 Score=123.68 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCC-------------------CceEEEEEecCCh
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPG-------------------GNKKTLILQEIPE 482 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~--t~~~~~~~~~vd~~g-------------------~~~~~~i~d~~g~ 482 (670)
++|+|+|.||||||||+|+|++........+ |...... .+..++ ....+.+||++|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998753222222 2222222 233332 1236778999997
Q ss_pred hhHh----hh-hchHhhcccccEEEEEEECCCc----------ccHHHHHHHHHHH------------------------
Q 005908 483 EGVK----KI-LSNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVEV------------------------ 523 (670)
Q Consensus 483 ~~~~----~~-~~~~~~~~~ad~vllv~D~s~~----------~s~~~~~~~~~~i------------------------ 523 (670)
.... .+ .+....++.+|++++|+|+++. +.+.++..+..++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 5432 12 1134568999999999999852 1222221111111
Q ss_pred -----------HHhc-CC--------------------CCCCCcEEEEEeCCCC--CCC--cccHHHHHHHHHHhCCCCc
Q 005908 524 -----------ARLG-ED--------------------SGYGVPCLLIASKDDL--KPY--TMAVQDSARVTQELGIEPP 567 (670)
Q Consensus 524 -----------~~~~-~~--------------------~~~~~piilv~NK~Dl--~~~--~~~~~~~~~~~~~~~~~~~ 567 (670)
.... .. ....+|+++++||.|. .+. +.....++++++..+.+ +
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~-v 238 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-V 238 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE-E
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe-E
Confidence 0000 00 0114899999999973 332 33467778888888865 9
Q ss_pred EEeecccC-ChHHHHHH
Q 005908 568 IPVSMKSK-DLNNVFSR 583 (670)
Q Consensus 568 ~~vSA~~g-~v~~l~~~ 583 (670)
+++||+++ ++.++.+.
T Consensus 239 v~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 239 VVVSARLEAELAELSGE 255 (368)
T ss_dssp EEECHHHHHHHHTSCHH
T ss_pred EEeechhHHHHHHhchH
Confidence 99999986 66665544
No 400
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.21 E-value=2.4e-11 Score=126.79 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=96.4
Q ss_pred HHHHhcCCCCCC-------CCCCcccceEEEEEEcCCCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCC---
Q 005908 440 LNSFLERPFSEN-------YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD--- 509 (670)
Q Consensus 440 in~l~~~~~~~~-------~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~--- 509 (670)
+.++....+.++ ..+|++. ....+... ...+.+||++|++.++.. +..++++++++|+|+|+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi--~~~~~~~~--~~~l~i~Dt~Gq~~~r~~--w~~~f~~~~~iIfv~dls~~dq 239 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGI--HEYDFEIK--NVPFKMVDVGGQRSERKR--WFECFDSVTSILFLVSSSEFDQ 239 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSE--EEEEEEET--TEEEEEEEECC---------CTTSCTTCCEEEEEEETTCTTC
T ss_pred HHHHhcCCCCCChhhhhhccCCccce--EEEEeeeC--CeEEEEEeccchhhhhhh--HHHHhCCCCEEEEEEECccccc
Confidence 555655544432 1234443 33444444 478889999999999888 8999999999999999999
Q ss_pred -------cccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCc-----------------ccHHHHHHHHH-----
Q 005908 510 -------EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------------MAVQDSARVTQ----- 560 (670)
Q Consensus 510 -------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~-----------------~~~~~~~~~~~----- 560 (670)
..++.+...|+..+....... +.|+|+++||+|+..++ ...+++..++.
T Consensus 240 ~l~ed~~~n~~~es~~~~~~i~~~~~~~--~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~ 317 (362)
T 1zcb_A 240 VLMEDRQTNRLTESLNIFETIVNNRVFS--NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG 317 (362)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHTCGGGT--TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHHHHHHhcchhhC--CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH
Confidence 778999999998887653222 69999999999986322 33455555542
Q ss_pred ------HhCCCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 561 ------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 561 ------~~~~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
..++ .+++|||++| ||.++|+++.+.+.
T Consensus 318 l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 318 KRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp TCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHH
Confidence 1223 3789999999 99999999998775
No 401
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.19 E-value=4.1e-11 Score=125.09 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCC--CCCeEeCCccc-------------------CCceeEEEEeCCCCc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPV--HAPTRLPPDFY-------------------PDRVPVTIIDTSSSL 70 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~--~~~~~~~~~~~-------------------~~~~~~~i~Dt~G~~ 70 (670)
++|+|+|.||||||||+|+|++... ..++|.+ ..+... ..+. .....+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV-VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE-EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee-EecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 6899999999999999999998652 2223321 111111 0111 123579999999987
Q ss_pred cch----hh---hHHHhccCCEEEEEEECCC
Q 005908 71 ENK----GK---LNEELKRADAVVLTYACNQ 94 (670)
Q Consensus 71 ~~~----~~---~~~~~~~ad~ii~v~d~~~ 94 (670)
.+. .+ ...+++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 642 12 3356899999999999975
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.18 E-value=1.7e-11 Score=120.16 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=86.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC----------------eE--e--CCcc--------------cC
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP----------------TR--L--PPDF--------------YP 56 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~----------------~~--~--~~~~--------------~~ 56 (670)
+.++|+|+|++|||||||+++|+...+.....++... .. + ...+ ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976543321111000 00 0 0000 00
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccch
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 136 (670)
.+..+.++|++|.-... ..+-...+.++.++|......... ..... . +.|.++|+||+|+.+.... ..
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~-~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVGA-DI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHTC-CH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhHH-HH
Confidence 12256666776632110 011123455667777533211110 01111 2 5788999999998653222 12
Q ss_pred hhhhhHHHHHhccCCeEEEeCcccCCCchHHHHHHHHHHc
Q 005908 137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 176 (670)
+........++...+++++||++|.|++++|+.+.+.+.
T Consensus 185 -~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 185 -KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp -HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 233444444433347999999999999999999987653
No 403
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.18 E-value=2.8e-11 Score=126.09 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=64.3
Q ss_pred eEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc
Q 005908 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 551 (670)
Q Consensus 472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~ 551 (670)
..+.++||+|...... .....+|++++|+|++.+..++.+.. .. . +.|.++|+||+|+......
T Consensus 149 ~~i~liDTpG~~~~~~-----~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 149 YDVVIVETVGVGQSET-----EVARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVADLIVINKDDGDNHTNV 212 (341)
T ss_dssp CSEEEEEEECCTTHHH-----HHHTTCSEEEEEECC------CCCCH---HH--H------HHCSEEEECCCCTTCHHHH
T ss_pred CCEEEEeCCCccchHH-----HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccCEEEEECCCCCChHHH
Confidence 4677899999644332 24589999999999986543221111 11 1 3688999999999763222
Q ss_pred HHHHHHHH---HHhC------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 552 VQDSARVT---QELG------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 552 ~~~~~~~~---~~~~------~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
....+++. ..++ .++++++||++| |++++++.|.+.+.
T Consensus 213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22222222 2223 346899999999 99999999998764
No 404
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.17 E-value=3.6e-10 Score=129.09 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=80.8
Q ss_pred cce-EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCCCC-------------CeEeCCcc-----cCCceeEEEE
Q 005908 11 TGV-RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPVHA-------------PTRLPPDF-----YPDRVPVTII 64 (670)
Q Consensus 11 ~~~-kI~ivG~~~vGKSSLi~~l~~~~-------~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~i~ 64 (670)
.++ +|+|+|+.++|||||..+|+... -+.....+.+ ...+...+ ..+++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 344 69999999999999999997321 0000000000 00011111 1246899999
Q ss_pred eCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 65 DTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 65 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
||||+.+|.......++-+|++|+|+|+...-..+... .++...+. ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc
Confidence 99999999999999999999999999988775555443 45555555 7999999999998643
No 405
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.17 E-value=4.4e-11 Score=138.66 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=84.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------------C--CCcccceEEEEEE------------cCCC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG 470 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~----------------~--~t~~~~~~~~~vd------------~~g~ 470 (670)
....+|+|+|.+|+|||||+++|++....... . .|+........+. ..+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45689999999999999999999875221111 0 1222221112222 2334
Q ss_pred ceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 005908 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (670)
Q Consensus 471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~ 546 (670)
...+.+|||+|+..|... ...+++.+|++|+|+|++++.+++....|.... .. ++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~------~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE------RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT------TCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc------CCCeEEEEECCCcc
Confidence 678889999999888776 788899999999999999998888766554433 32 69999999999986
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=1.5e-10 Score=116.15 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=69.2
Q ss_pred eEEEEEecCChhhHhhhhc----hHhhcccccEEEEEEECCCcccHHHHHHHH----HHHHHhcCCCCCCCcEEEEEeCC
Q 005908 472 KKTLILQEIPEEGVKKILS----NKEALASCDVTIFVYDSSDEYSWKRTKELL----VEVARLGEDSGYGVPCLLIASKD 543 (670)
Q Consensus 472 ~~~~i~d~~g~~~~~~~~~----~~~~~~~ad~vllv~D~s~~~s~~~~~~~~----~~i~~~~~~~~~~~piilv~NK~ 543 (670)
..+.++|++|......... ....+.. +++++++|++...+........ ...... +.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 3678899999866543210 1134566 8999999987544433322211 111111 58999999999
Q ss_pred CCCCCccc---HH---HHHH---------------------HHHHhCCC-CcEEeecccC-ChHHHHHHHHHHHh
Q 005908 544 DLKPYTMA---VQ---DSAR---------------------VTQELGIE-PPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 544 Dl~~~~~~---~~---~~~~---------------------~~~~~~~~-~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
|+...... .+ .... +++.++.. +++++||++| |+++++++|.+.+.
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 98764311 01 1111 12344432 6999999999 99999999988764
No 407
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.7e-11 Score=124.49 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCCCCCeEeCCcccCCceeEEEEeCCCCccchh-------hhHHHhccC
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRA 83 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 83 (670)
..+|+|||.||||||||+|+|++.+. +.++|.++... ....+...+.++.++||||...... ..-..++.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~-~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVT-VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCE-EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeee-eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 46899999999999999999998763 33355433222 3344556778999999999754321 123567899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCC
Q 005908 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRG 129 (670)
Q Consensus 84 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~ 129 (670)
|++++|+|++++..... .+..++.... ..+|.+++.||+|...
T Consensus 151 d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 99999999988743332 2344454432 3678899999999753
No 408
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.14 E-value=5.3e-10 Score=123.29 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC---------------CCCC--C-----CcccceEEEEEEcCCCceEEEEEecCC
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFS---------------ENYA--P-----TTGEQYAVNVVDQPGGNKKTLILQEIP 481 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~---------------~~~~--~-----t~~~~~~~~~vd~~g~~~~~~i~d~~g 481 (670)
-+|+|+|..++|||||..+|+...-. ...+ + .++..-....+.+. ...+.++||+|
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPG 109 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDTPG 109 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECCCC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeCCC
Confidence 57999999999999999999722111 0000 0 01111112334443 47788999999
Q ss_pred hhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
+..|..- ..+.++-+|++|+|+|+.++..-+....| +...++ ++|+++++||+|...
T Consensus 110 HvDF~~E--v~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~------~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSED--TYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR------ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHH--HHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCCEEEEEECTTSCC
T ss_pred cHHHHHH--HHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh------CCceEEEEecccchh
Confidence 9887765 67888999999999999999775544444 555554 799999999999865
No 409
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.05 E-value=7.9e-11 Score=117.61 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=55.5
Q ss_pred CCCCcc-chhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHH
Q 005908 66 TSSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144 (670)
Q Consensus 66 t~G~~~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~ 144 (670)
.||+.. ....+...+..+|+++.|+|+.++.+..+.. +. .. ++|.++|+||+|+.+... . +....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-----ll-~k~~iivlNK~DL~~~~~---~-~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-----FS-RKETIILLNKVDIADEKT---T-KKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-----CT-TSEEEEEEECGGGSCHHH---H-HHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-----hc-CCCcEEEEECccCCCHHH---H-HHHHHHH
Confidence 355542 2345668899999999999999887654321 11 12 789999999999975311 1 1112222
Q ss_pred HHhccCCeEEEeCcccCCCchHHHH
Q 005908 145 QQFREIETCVECSATTMIQVPDVFY 169 (670)
Q Consensus 145 ~~~~~~~~~~~~SA~~~~gi~~l~~ 169 (670)
.+.+ .++ .+||+++.|++++++
T Consensus 72 ~~~g--~~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 72 KKQG--KRV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp HHTT--CCE-EECCTTSCHHHHHHH
T ss_pred HHcC--CeE-EEECCCCcCHHHHHH
Confidence 2333 256 999999999876654
No 410
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=7.9e-10 Score=114.68 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=89.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHc------CCC--CCCCCCCCC-------C-eEeCC---------------------
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHA-------P-TRLPP--------------------- 52 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~------~~~--~~~~~~~~~-------~-~~~~~--------------------- 52 (670)
.+...|+|+|++|+|||||++.+.+ ++. ....+.... . .++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 331 111110000 0 00000
Q ss_pred ---------cccCCceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEe
Q 005908 53 ---------DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123 (670)
Q Consensus 53 ---------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N 123 (670)
.+...++.+.|+||+|..... ......+|++++|+|....+..+.+. ..+. ..|.+++.|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEE
Confidence 012257789999999976432 23457899999999976443221111 1111 235677889
Q ss_pred CCCCCCCCCccchhhhhhHHHHHh---c-----cCCeEEEeCcccCCCchHHHHHHHHHH
Q 005908 124 KLDLRGDHNATSLEEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV 175 (670)
Q Consensus 124 K~Dl~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~SA~~~~gi~~l~~~i~~~~ 175 (670)
|+|+...... .....+.+.... . ...+++.+||+++.|++++++.+.+..
T Consensus 202 K~Dl~~~~~~--s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 202 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred chhccCchhH--HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9997542211 111122222211 1 013689999999999999999988764
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=1e-09 Score=113.79 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=88.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCC-CCc-c----------------cceEEEEEEcC--------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA-PTT-G----------------EQYAVNVVDQP-------- 468 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~-~t~-~----------------~~~~~~~vd~~-------- 468 (670)
.....++|+|++|||||||+|.+.+ +....... ++. . .........++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999983 33221110 100 0 00001111111
Q ss_pred ------------CCceEEEEEecCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE
Q 005908 469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (670)
Q Consensus 469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi 536 (670)
.....+.++||+|...-. ......+|++++|+|++.++..+.+.. .+. ..|.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~--------~~~~ 196 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKK---GIF--------ELAD 196 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCT---THH--------HHCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHHhhCCEEEEEEcCCCcccHHHHHH---HHh--------cccc
Confidence 023456778999863211 123478999999999875432211111 111 2466
Q ss_pred EEEEeCCCCCCCc-ccHHHHHHHHHHh---C------CCCcEEeecccC-ChHHHHHHHHHHHh
Q 005908 537 LLIASKDDLKPYT-MAVQDSARVTQEL---G------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 537 ilv~NK~Dl~~~~-~~~~~~~~~~~~~---~------~~~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
++|+||+|+.... ......+++.... . .++++.+||++| |++++++.|.+...
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7788999976422 1222333443322 2 356899999999 99999999988765
No 412
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.96 E-value=3.4e-10 Score=127.46 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCCc-c------------cceEEEEEEcCCCceEEEEEecCChhhH
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERPFS-----ENYAPTT-G------------EQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t~-~------------~~~~~~~vd~~g~~~~~~i~d~~g~~~~ 485 (670)
-+|+|+|..++|||||..+|+...-. .+...++ . .......+.+. .+.+.++||+|+..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--NTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--SCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--CEEEEEEECCCcHHH
Confidence 36999999999999999999732111 1111111 1 01111223333 356778999999887
Q ss_pred hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc--HHHH--------
Q 005908 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDS-------- 555 (670)
Q Consensus 486 ~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~-------- 555 (670)
..- ..+.++-+|++|+|+|+..+..-+. ...++...++ ++|.++++||+|....+.. .+++
T Consensus 81 ~~E--v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~------~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 81 LAE--VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM------GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp HHH--HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH------TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred HHH--HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc------CCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 765 6788899999999999999865444 3444455555 7999999999998652211 0000
Q ss_pred -----------------------HHH-----------------------------HHHhCCCCcEEeecccC-ChHHHHH
Q 005908 556 -----------------------ARV-----------------------------TQELGIEPPIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 556 -----------------------~~~-----------------------------~~~~~~~~~~~vSA~~g-~v~~l~~ 582 (670)
+.+ .....+.|++..||++| |++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 000 11223457999999999 9999999
Q ss_pred HHHHHHhCCCCC
Q 005908 583 RIIWAAEHPHLN 594 (670)
Q Consensus 583 ~l~~~~~~~~~~ 594 (670)
.+.+.++.|...
T Consensus 232 ~i~~~~p~p~~~ 243 (638)
T 3j25_A 232 VITNKFYSSTHR 243 (638)
T ss_dssp HHHHSCCCSGGG
T ss_pred hhhccccCcccc
Confidence 999987665543
No 413
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.92 E-value=5.5e-10 Score=116.85 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=52.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC---------------ceEEEEEecCChhhH
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV 485 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~---------------~~~~~i~d~~g~~~~ 485 (670)
...++|+|+|.||||||||+|+|++..+.....|+++.......+.+++. ...+.+||++|....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999998764333344443333445555532 124778999997654
Q ss_pred hh----h-hchHhhcccccEEEEEEECCCcccH
Q 005908 486 KK----I-LSNKEALASCDVTIFVYDSSDEYSW 513 (670)
Q Consensus 486 ~~----~-~~~~~~~~~ad~vllv~D~s~~~s~ 513 (670)
.+ + .....+++.+|++++|+|+++..++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 33 1 1256788999999999999875443
No 414
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.86 E-value=3.3e-09 Score=108.37 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=75.4
Q ss_pred hhhHhhhhchHhhcccccEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc-c-HHHHHHH
Q 005908 482 EEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-A-VQDSARV 558 (670)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~-~-~~~~~~~ 558 (670)
++++..+ ...++.++|++++|+|++++. ++..+.+|+..+... ++|+++|+||+|+.+... . .++..++
T Consensus 66 ~er~~~l--~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLL--IRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp CCCSCEE--ETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CChHHHH--hHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 4455666 567899999999999999985 888888998877653 799999999999987432 1 3445556
Q ss_pred HHHhCCCCcEEeecccC-ChHHHHHHHH
Q 005908 559 TQELGIEPPIPVSMKSK-DLNNVFSRII 585 (670)
Q Consensus 559 ~~~~~~~~~~~vSA~~g-~v~~l~~~l~ 585 (670)
.+..+++ ++++||++| |++++++.+.
T Consensus 138 ~~~~g~~-~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 138 YRDAGYD-VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred HHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence 6667775 999999999 9999998654
No 415
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.83 E-value=5e-08 Score=111.42 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=78.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCCC-cc------------cceEEEEEEcCC-----CceEEEEEe
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFS-----ENYAPT-TG------------EQYAVNVVDQPG-----GNKKTLILQ 478 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~-----~~~~~t-~~------------~~~~~~~vd~~g-----~~~~~~i~d 478 (670)
+.-+|+|+|...+|||||..+|+...-. .+...+ .. ..-....+.+.+ +.+.+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3458999999999999999999732100 011111 00 001112222322 246788999
Q ss_pred cCChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 005908 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (670)
Q Consensus 479 ~~g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~ 547 (670)
|+|+..|..- ....++-+|++|+|+|+..+..-+...-| +...+. ++|.++++||+|...
T Consensus 92 TPGHvDF~~E--v~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~------~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIE--VERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY------GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH------TCCEEEEEECSSSTT
T ss_pred CCCCcccHHH--HHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc------CCCeEEEEccccccC
Confidence 9999877664 67788999999999999998775544444 444444 799999999999864
No 416
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=3.1e-08 Score=103.95 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=58.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCCcccceEEEEEEcCCC---------------ceEEEEEecCChhh
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEG 484 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~t~~~~~~~~~vd~~g~---------------~~~~~i~d~~g~~~ 484 (670)
....+|+|+|++|||||||+|+|++.....+ ..|.++.....-.+.++|. ...+.++|++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4568999999999999999999999876333 2343333333334445531 13466789988422
Q ss_pred H----hhh-hchHhhcccccEEEEEEECCC
Q 005908 485 V----KKI-LSNKEALASCDVTIFVYDSSD 509 (670)
Q Consensus 485 ~----~~~-~~~~~~~~~ad~vllv~D~s~ 509 (670)
. +.+ ......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 111 014566789999999999874
No 417
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.77 E-value=6.1e-09 Score=108.96 Aligned_cols=91 Identities=11% Similarity=0.187 Sum_probs=49.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCCCC-CeEeCCcccC---------------CceeEEEEeCCCCccc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHA-PTRLPPDFYP---------------DRVPVTIIDTSSSLEN 72 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~~~~-~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~ 72 (670)
...++|+|+|.||||||||+|+|++..+... +|.++. ...-.+.+.. ....+.+|||||+..+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999998865222 332111 1110011111 0235999999998764
Q ss_pred hh-------hhHHHhccCCEEEEEEECCChhhHHH
Q 005908 73 KG-------KLNEELKRADAVVLTYACNQQSTLSR 100 (670)
Q Consensus 73 ~~-------~~~~~~~~ad~ii~v~d~~~~~s~~~ 100 (670)
.. .+..+++++|++++|+|+++..++.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 43 34578899999999999987665544
No 418
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=1.1e-08 Score=103.79 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred hhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHH---hccCC
Q 005908 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ---FREIE 151 (670)
Q Consensus 75 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 151 (670)
+....+.++|.+++|+|+.++..-.+..++++...... ++|.+||.||+|+.+... ..+..+.+.+. .+ .
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g--~ 151 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIG--Y 151 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHT--C
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCC--C
Confidence 34457889999999999987654444333455444444 899999999999976421 00112333333 33 3
Q ss_pred eEEEeCcccCCCchHH
Q 005908 152 TCVECSATTMIQVPDV 167 (670)
Q Consensus 152 ~~~~~SA~~~~gi~~l 167 (670)
+++.+||+++.|++++
T Consensus 152 ~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADI 167 (307)
T ss_dssp CEEECCHHHHTTCTTT
T ss_pred eEEEEecCCCCCHHHH
Confidence 6899999988887643
No 419
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.67 E-value=1.3e-07 Score=99.14 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=56.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCCCC-CeEeCCcccC------------C---ceeEEEEeCCCCcc
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHA-PTRLPPDFYP------------D---RVPVTIIDTSSSLE 71 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~--~~~~~~~~~-~~~~~~~~~~------------~---~~~~~i~Dt~G~~~ 71 (670)
.+..+|+|+|++|||||||+|+|++... ..++|.+.. ...-.+.+.+ . ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4468999999999999999999999764 222443211 1110111111 1 13589999999643
Q ss_pred -------chhhhHHHhccCCEEEEEEECCC
Q 005908 72 -------NKGKLNEELKRADAVVLTYACNQ 94 (670)
Q Consensus 72 -------~~~~~~~~~~~ad~ii~v~d~~~ 94 (670)
........++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22244567889999999999864
No 420
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=95.07 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=68.0
Q ss_pred CCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHH---HHHHHhc--CCCCCEEEEEeCC-CCCCCCCccchhhh
Q 005908 66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEV 139 (670)
Q Consensus 66 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~pvilv~NK~-Dl~~~~~~~~~~~~ 139 (670)
.+|+...+.+|..|+.++|++|||+|.+|.+.++ ..+.+ ...+... ..+.|++|++||. |+...-. ..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams---~~EI 184 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYL 184 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC---HHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC---HHHH
Confidence 3478888999999999999999999999885444 33233 3333332 2478999999995 6754322 2222
Q ss_pred hhHHHH-HhccCCeEEEeCcccCCCchHHHHHHHHHHcC
Q 005908 140 MGPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (670)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 177 (670)
.+.+.. .......+..|||++|+|+.+-++|+.+.+..
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 222211 11222368999999999999999999876643
No 421
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.62 E-value=4.1e-08 Score=91.93 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=67.2
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCC-CCCCCcccHHHHHH
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKD-DLKPYTMAVQDSAR 557 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~piilv~NK~-Dl~~~~~~~~~~~~ 557 (670)
|++.++.+ |..|+.++|++|||+|++|.+.++ .+..+.++....... ..+.|++|.+||. |+.. ... ..+
T Consensus 111 GQ~klRpl--Wr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams---~~E 183 (227)
T 3l82_B 111 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMP---CFY 183 (227)
T ss_dssp ------CC--HHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCC---HHH
T ss_pred cHHHHHHH--HHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCC---HHH
Confidence 67788888 999999999999999999985543 333333333322211 1278999999996 6754 222 233
Q ss_pred HHHHhCCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 558 VTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 558 ~~~~~~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
+++.+++. .+..|||++| |+.+-+++|.+.+..
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 44444331 3789999999 999999999887654
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.49 E-value=2.5e-07 Score=100.17 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=87.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH------cCCC--CCC---CCCC------------CCCeEeCC-------------c
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAA------TESV--PEK---VPPV------------HAPTRLPP-------------D 53 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~------~~~~--~~~---~~~~------------~~~~~~~~-------------~ 53 (670)
.+...|+|+|.+||||||++++|. +.+. +.. .+.. ........ .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 4431 110 0100 00000000 0
Q ss_pred ccCCceeEEEEeCCCCccch-hhhH---HH--hccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEeCCC
Q 005908 54 FYPDRVPVTIIDTSSSLENK-GKLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLD 126 (670)
Q Consensus 54 ~~~~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~D 126 (670)
+...++.+.|+||||..... .... .. +..+|.+++|+|++....... ....+.. .+|+ ++|.||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence 11156789999999976422 1111 11 237899999999887543221 2333333 2575 89999999
Q ss_pred CCCCCCccchhhhhhHHHHHhcc----------------CCeEEEeCcccCCC-chHHHHHHHHH
Q 005908 127 LRGDHNATSLEEVMGPIMQQFRE----------------IETCVECSATTMIQ-VPDVFYYAQKA 174 (670)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~~~g-i~~l~~~i~~~ 174 (670)
....... ...+...++. +.+.+.+|+..|.| +.++++.+.+.
T Consensus 252 ~~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8643221 1112222221 11334579999999 99999888664
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.48 E-value=3.5e-07 Score=94.59 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCccchhhhhhHHHHHhccC-CeEEEeC
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS 157 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S 157 (670)
.+.++|.+++|... ++..-....++++...... ++|.+||.||+|+.+... .+..+.+...|... .+++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEEe
Confidence 36789999988765 4543333333455444444 788999999999975321 11123333333211 3689999
Q ss_pred cccCCCchHHH
Q 005908 158 ATTMIQVPDVF 168 (670)
Q Consensus 158 A~~~~gi~~l~ 168 (670)
|+++.|++++.
T Consensus 200 a~~~~gl~~L~ 210 (358)
T 2rcn_A 200 SHTQDGLKPLE 210 (358)
T ss_dssp TTTTBTHHHHH
T ss_pred cCCCcCHHHHH
Confidence 99999886544
No 424
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.45 E-value=2.9e-07 Score=99.73 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=87.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEEcC-------------
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVDQP------------- 468 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~------~~~~~~~~~~t~~-------------~~~~~~~vd~~------------- 468 (670)
..+..|+|+|.+||||||++++|. +.....+...+.+ ..+.+....+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999 5443322111100 01111111000
Q ss_pred --CCceEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcE-EEEE
Q 005908 469 --GGNKKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIA 540 (670)
Q Consensus 469 --g~~~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~ 540 (670)
.....+.++||+|... ...+..... ...+|.+++|+|++.+.. .......+.. ..|+ ++|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~---~~~~a~~~~~-------~~~i~gvVl 247 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQA---CEAQAKAFKD-------KVDVASVIV 247 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTT---HHHHHHHHHH-------HHCCCCEEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEecccccc---HHHHHHHHHh-------hcCceEEEE
Confidence 0234677899988532 111211111 237899999999988643 2222333332 2564 8899
Q ss_pred eCCCCCCCcccHHHHHHHHHHhCCC-----------------CcEEeecccC-C-hHHHHHHHHHH
Q 005908 541 SKDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA 587 (670)
Q Consensus 541 NK~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSA~~g-~-v~~l~~~l~~~ 587 (670)
||+|....... ...+....+.+ |.+.+||.+| | +.+|++.+.+.
T Consensus 248 NK~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99998753221 22233344332 3456899999 8 99999999876
No 425
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.45 E-value=2.6e-07 Score=96.80 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=73.5
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHH----H
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS----A 556 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~----~ 556 (670)
..+.|.++ ...+++.+|++++|+|++++. ..|...+.++.. ++|+++|+||+|+.+.....+.. .
T Consensus 55 ~~e~f~~~--l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~----~~p~ilV~NK~DL~~~~~~~~~~~~~l~ 123 (368)
T 3h2y_A 55 TDDDFLRI--LNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWMR 123 (368)
T ss_dssp -CHHHHHH--HHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS----SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred CHHHHHHH--HHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC----CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence 44677777 667788899999999999852 456666666543 68999999999998754433333 3
Q ss_pred HHHHHhCCC--CcEEeecccC-ChHHHHHHHHHHHh
Q 005908 557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 557 ~~~~~~~~~--~~~~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
.+++..++. +++++||++| |++++++.+.+...
T Consensus 124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 446667773 5899999999 99999999987653
No 426
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.42 E-value=1.7e-07 Score=92.29 Aligned_cols=110 Identities=7% Similarity=-0.015 Sum_probs=73.0
Q ss_pred CCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHH--HHHHHHHhc--CCCCCEEEEEeC-CCCCCCCCccchhhhh
Q 005908 66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS--YWLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEVM 140 (670)
Q Consensus 66 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~--~~~~~l~~~--~~~~pvilv~NK-~Dl~~~~~~~~~~~~~ 140 (670)
.+|+...+.+|..|+.++|++|||+|.+|++.++...+ .+...+... ..+.|++|.+|| .|+...-. ..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHH
Confidence 46888899999999999999999999999865442211 123444321 248999999997 58864322 22222
Q ss_pred hHHHH-HhccCCeEEEeCcccCCCchHHHHHHHHHHcCC
Q 005908 141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (670)
Q Consensus 141 ~~~~~-~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 178 (670)
+.+.. .......+..|||.+|+|+.+-++++.+.+...
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 22211 112223689999999999999999999887543
No 427
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.40 E-value=2.4e-06 Score=90.26 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCCCCCeEeCCcccCCc-eeEEEEeCCCCccchhhhHH-----Hhcc
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLENKGKLNE-----ELKR 82 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~-----~~~~ 82 (670)
...|+|+|++|+|||||+|.|.+-..... .......++....+.... -.+.++|++|.......... .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 34899999999999999999998432111 011000111011111111 25899999996432222222 2344
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC-------CCCc--cchhhhhhHHHH----Hhc-
Q 005908 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR- 148 (670)
Q Consensus 83 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-------~~~~--~~~~~~~~~~~~----~~~- 148 (670)
.+.+++ ++..... -..+ .+...+... ++|+++|.||.|+.- -+.. ....+.+..+.. +.+
T Consensus 149 ~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566665 7754211 2222 256666655 789999999999641 1111 011222233321 111
Q ss_pred cCCeEEEeCc--ccCCCchHHHHHHHHHHc
Q 005908 149 EIETCVECSA--TTMIQVPDVFYYAQKAVL 176 (670)
Q Consensus 149 ~~~~~~~~SA--~~~~gi~~l~~~i~~~~~ 176 (670)
....++.+|+ ..+.|++++.+.+.+.+.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1235799999 667789999999987763
No 428
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.37 E-value=1.1e-06 Score=92.87 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=87.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCC--CcccceEEEEEEcCCCceEEEEEecCChhh----Hhhhhch
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN----YAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILSN 491 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~----~~~--t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~----~~~~~~~ 491 (670)
....++|+|++|||||||+|.+.|-..... ... ++... .....+ ....+.++|.+|-.. ..... .
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~---~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L-~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL-E 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHH-H
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE---Eecccc-ccCCeeehHhhcccchHHHHHHHH-H
Confidence 446899999999999999999998432211 111 11111 122222 222455688877421 11110 1
Q ss_pred HhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC------------CCcccHHHHHHHH
Q 005908 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK------------PYTMAVQDSARVT 559 (670)
Q Consensus 492 ~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~------------~~~~~~~~~~~~~ 559 (670)
...+...+.+++ ++...+ . .....+...+... ++|+++|.||.|+. ......+.+.++.
T Consensus 143 ~~~L~~~~~~~~-lS~G~~-~-kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 143 KMKFYEYDFFII-ISATRF-K-KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HTTGGGCSEEEE-EESSCC-C-HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HcCCCccCCeEE-eCCCCc-c-HHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 122344566655 777532 1 2222334444443 68999999999874 1111133344443
Q ss_pred H----HhC--CCCcEEeec--ccC-ChHHHHHHHHHHHhC
Q 005908 560 Q----ELG--IEPPIPVSM--KSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 560 ~----~~~--~~~~~~vSA--~~g-~v~~l~~~l~~~~~~ 590 (670)
. +.+ ...++.+|+ ..+ |++++.+.+.+.+..
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 222 345799999 667 899999999988754
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=3.6e-07 Score=96.46 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCC-CCCCeE--eCCcccCCc--eeEEEEeCCCCccch-------------
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTR--LPPDFYPDR--VPVTIIDTSSSLENK------------- 73 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~-~~~-~~~~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~------------- 73 (670)
++++|+|++|+|||||+|.|++..+... ... ...... +...+.... ..+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 4699999999999999999998764322 110 111111 222222222 368999999875321
Q ss_pred -hhhHHHh-------------ccC--C-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCC
Q 005908 74 -GKLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (670)
Q Consensus 74 -~~~~~~~-------------~~a--d-~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 130 (670)
..+..++ .++ | +++|+.|....-+..++ .+++.+. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 1111111 112 3 35566675544433332 2555554 47999999999998754
No 430
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.32 E-value=5.7e-07 Score=94.33 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=71.9
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHH----
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA---- 556 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~---- 556 (670)
.++.|.++ ...+++.++++++|+|++++.+ .|...+.++.. ++|+++|+||+|+.+.....+...
T Consensus 57 ~~e~f~~~--L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 57 DDDDFLSM--LHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp --CHHHHH--HHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CHHHHHHH--HHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 46678876 5667789999999999999753 34444444433 589999999999987543333333
Q ss_pred HHHHHhCCC--CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 557 ~~~~~~~~~--~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
++++..+.. +++.+||++| |++++++.+.+....
T Consensus 126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 335566763 5899999999 999999999887643
No 431
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.32 E-value=2e-07 Score=91.67 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=69.3
Q ss_pred ChhhHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHH---HHH-HhcCCCCCCCcEEEEEeC-CCCCCCcccHHHH
Q 005908 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV---EVA-RLGEDSGYGVPCLLIASK-DDLKPYTMAVQDS 555 (670)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~---~i~-~~~~~~~~~~piilv~NK-~Dl~~~~~~~~~~ 555 (670)
|++.++.+ +..|+.++|++|+|+|++|++.++ ....+. .+. ...... +.|++|.+|| -|+... .. .
T Consensus 196 GQ~~lRpl--Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~--~apLLVfANKkQDlp~A-ms---~ 266 (312)
T 3l2o_B 196 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS--GRPLLVLSCISQGDVKR-MP---C 266 (312)
T ss_dssp -CCCCCHH--HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCT--TCCEEEEEEESSTTSCB-CC---H
T ss_pred CHHHHHHH--HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcC--CCeEEEEeCCcccccCC-CC---H
Confidence 56677777 899999999999999999986544 222222 221 111011 7999999997 587542 22 2
Q ss_pred HHHHHHhCCC------CcEEeecccC-ChHHHHHHHHHHHhC
Q 005908 556 ARVTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (670)
Q Consensus 556 ~~~~~~~~~~------~~~~vSA~~g-~v~~l~~~l~~~~~~ 590 (670)
.++++.+++. .+..+||++| |+.+-+++|.+.+..
T Consensus 267 ~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 267 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 3344444331 3789999999 999999999998754
No 432
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=1.7e-06 Score=91.34 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----CCcccceEEEEEEcCCCceEEEEEecCChhh--------------
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------------- 484 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~----~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~-------------- 484 (670)
.++++|+|++|+|||||+|.|+|..+..... +.............++-...+.++|++|-..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999999875432111 1111111111222232223556677665211
Q ss_pred ----HhhhhchH-------hhccccc---EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcc
Q 005908 485 ----VKKILSNK-------EALASCD---VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (670)
Q Consensus 485 ----~~~~~~~~-------~~~~~ad---~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~ 550 (670)
+....... ....+++ +++++.|+..+.+-.+ ..+++.+. . +.|+|+|.||+|......
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~-----~--~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD-----S--KVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC-----S--CSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh-----h--CCCEEEEEcchhccchHH
Confidence 11100000 0112333 4667778766544332 22333332 1 699999999999887443
Q ss_pred cHHHHHHHHH---HhCCCCcEEeecc
Q 005908 551 AVQDSARVTQ---ELGIEPPIPVSMK 573 (670)
Q Consensus 551 ~~~~~~~~~~---~~~~~~~~~vSA~ 573 (670)
.......+.+ ..++. ++.+|.-
T Consensus 194 ~~~l~~~I~~~L~~~gi~-I~~is~~ 218 (427)
T 2qag_B 194 LTKFKIKITSELVSNGVQ-IYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHBTTBCC-CCCCC--
T ss_pred HHHHHHHHHHHHHHcCCc-EEecCCC
Confidence 3332233333 23443 7777753
No 433
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.24 E-value=1.4e-06 Score=87.04 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC---------CCCCCCCeEeCCcccCC--ceeEEEEeCCCCccchh------
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---------VPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLENKG------ 74 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~------ 74 (670)
.++++|+|++|+|||||+|.|++...... .+.......+...+... ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987542211 11111111111111112 23689999998642110
Q ss_pred hhH--------H--------------HhccCCEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC
Q 005908 75 KLN--------E--------------ELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (670)
Q Consensus 75 ~~~--------~--------------~~~~ad~ii~v~d~~-~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 129 (670)
... . .+..+++.++++|.. .+-+-.+. .++..+... .++|+|.||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~~---~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSKV---VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHTT---SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHhc---CcEEEEEeccccCC
Confidence 011 0 122368889999854 33332232 356666543 89999999999764
No 434
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.19 E-value=3.2e-06 Score=84.51 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=62.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------CCcccceEEEE-EEcCCCceEEEEEecCChh---------
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA---------PTTGEQYAVNV-VDQPGGNKKTLILQEIPEE--------- 483 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~---------~t~~~~~~~~~-vd~~g~~~~~~i~d~~g~~--------- 483 (670)
.++++|+|++|+|||||+|.|+|........ .+... ..+.. ..-++-...+.++|++|-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~-~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI-KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC-CEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee-eeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4789999999999999999999754332110 11111 11111 1111112244556665510
Q ss_pred -hHhhhh--c--------------hHhhcccccEEEEEEECC-CcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 005908 484 -GVKKIL--S--------------NKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545 (670)
Q Consensus 484 -~~~~~~--~--------------~~~~~~~ad~vllv~D~s-~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl 545 (670)
...... . .+-.+..+++.++++|.. .+.+-. ....++.+.. ..++|+|.||+|.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~-------~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSK-------VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHT-------TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHh-------cCcEEEEEecccc
Confidence 011100 0 011233468899999965 443322 2344444433 3799999999998
Q ss_pred CCCcc
Q 005908 546 KPYTM 550 (670)
Q Consensus 546 ~~~~~ 550 (670)
.....
T Consensus 153 lt~~e 157 (270)
T 3sop_A 153 MTLEE 157 (270)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 87443
No 435
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.03 E-value=5.7e-06 Score=83.25 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=62.1
Q ss_pred hHhhcccccEEEEEEECCCcccHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcE
Q 005908 491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPI 568 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 568 (670)
....+..+|+|+.|+|+.++.+.. .+.+++ . ++|+++|+||+|+.+... .+...++.+..+. +++
T Consensus 17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~----~kp~ilVlNK~DL~~~~~-~~~~~~~~~~~g~-~~i 83 (282)
T 1puj_A 17 VTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K----NKPRIMLLNKADKADAAV-TQQWKEHFENQGI-RSL 83 (282)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S----SSCEEEEEECGGGSCHHH-HHHHHHHHHTTTC-CEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C----CCCEEEEEECcccCCHHH-HHHHHHHHHhcCC-cEE
Confidence 677899999999999999986653 233322 1 699999999999987321 1122222333455 489
Q ss_pred EeecccC-ChHHHHHHHHHHHh
Q 005908 569 PVSMKSK-DLNNVFSRIIWAAE 589 (670)
Q Consensus 569 ~vSA~~g-~v~~l~~~l~~~~~ 589 (670)
++||++| |++++++.+.+.+.
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999 99999988877653
No 436
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.97 E-value=6.2e-06 Score=87.91 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC------C--CCC-C--CCCC------------------CCCeEeCCcc------cC
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAATE------S--VPE-K--VPPV------------------HAPTRLPPDF------YP 56 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~~~------~--~~~-~--~~~~------------------~~~~~~~~~~------~~ 56 (670)
...|+|+|.+||||||+++.|... + +.. + .+.. ...+.-+..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999752 2 100 0 0000 0000000000 12
Q ss_pred CceeEEEEeCCCCccchhh-hH---H--HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-C-EEEEEeCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGK-LN---E--ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR 128 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~-~~---~--~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-vilv~NK~Dl~ 128 (670)
.++.+.|+||||....... .. . .+..+|.+++|+|.+.... ... ....++ ... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCCCCc
Confidence 5678999999997643221 11 1 1236899999999865542 111 222222 245 5 88999999975
Q ss_pred C
Q 005908 129 G 129 (670)
Q Consensus 129 ~ 129 (670)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 437
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.96 E-value=0.0001 Score=78.03 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=80.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHc------CCC---CCC--CCC----------CCCCeEeCCc---------------c
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAAT------ESV---PEK--VPP----------VHAPTRLPPD---------------F 54 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~------~~~---~~~--~~~----------~~~~~~~~~~---------------~ 54 (670)
+...|+++|.+||||||++..|.. .+. ..+ .++ ..+....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999872 221 100 010 0000011000 0
Q ss_pred cCCceeEEEEeCCCCccchh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Q 005908 55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (670)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 128 (670)
...++.+.|+||+|...... ... .....+|.+++|+|++....... ....+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence 01357899999999654222 111 22346899999999876543322 23334433 34567999999986
Q ss_pred CCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
... .....+....+ .|+..++. |++++++
T Consensus 253 ~~g------G~~ls~~~~~g--~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AKG------GGALSAVAATG--APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSH------HHHHHHHHTTC--CCEEEEEC--SSSTTCE
T ss_pred ccc------cHHHHHHHHHC--CCEEEEEc--CCChHHh
Confidence 421 22233344444 25666664 8888654
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.87 E-value=6.8e-06 Score=87.62 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=83.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC------CCCCCCC-------------------------C-Ccccc--eEEEEEEcC
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-------------------------P-TTGEQ--YAVNVVDQP 468 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~~------~~~~~~~-------------------------~-t~~~~--~~~~~vd~~ 468 (670)
+..|+|+|.+||||||+++.|... ....... + ++.+. .....+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999862 1110000 0 11110 000001111
Q ss_pred CCceEEEEEecCChhh-----HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCC-c-EEEEEe
Q 005908 469 GGNKKTLILQEIPEEG-----VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-P-CLLIAS 541 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~-----~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-p-iilv~N 541 (670)
....+.++||+|... +..+. ....+..+|.+++|+|++.+.. .......+.. .. | ..+|.|
T Consensus 179 -~~~D~vIIDT~G~~~~~~~l~~~l~-~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~~i~gvVln 246 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKEEKGLLEEMK-QIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-------AVGEIGSIIVT 246 (432)
T ss_dssp -SSCSEEEEECCCSCSSHHHHHHHHH-HTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-------TSCSCEEEEEE
T ss_pred -hCCCEEEEcCCCCccccHHHHHHHH-HHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-------cccCCeEEEEe
Confidence 234567788888532 11111 1223347899999999987632 2222222221 35 5 789999
Q ss_pred CCCCCCCcccHHHHHHHHHHhCCC-----------------CcEEeecccC-C-hHHHHHHHHHHH
Q 005908 542 KDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWAA 588 (670)
Q Consensus 542 K~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSA~~g-~-v~~l~~~l~~~~ 588 (670)
|+|..... ..+..+....+.+ |...+|+..| | +..+++.+.+.+
T Consensus 247 K~D~~~~~---g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 247 KLDGSAKG---GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp CSSSCSTT---HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred CCCCccch---HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 99986422 2233355555443 2345677788 7 777777665543
No 439
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.82 E-value=9.8e-06 Score=80.56 Aligned_cols=57 Identities=28% Similarity=0.234 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcccCCceeEEEEeCCCCcc
Q 005908 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 13 ~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 71 (670)
++|+++|.+|||||||+|+|.+....... .+.+.++....+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 69999999999999999999987753321 1112222111111 134689999999764
No 440
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.81 E-value=8.9e-05 Score=78.56 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCCCCcc-------------cceEEEEEEcCC-------------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-------------EQYAVNVVDQPG------------- 469 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~~t~~-------------~~~~~~~vd~~g------------- 469 (670)
.+..|+++|.+||||||++..|.. .........+.+ ....+.......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999873 222111100100 011111110000
Q ss_pred --CceEEEEEecCChh-----hHhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 005908 470 --GNKKTLILQEIPEE-----GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542 (670)
Q Consensus 470 --~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK 542 (670)
....+.++||+|.. ....+. .......+|.+++|+|++.+.. .......+... -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~-~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~------~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMK-QISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA------TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS------CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHH-HHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh------CCCeEEEEEC
Confidence 12456778888831 222221 2233446899999999987633 23333333332 2455689999
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
+|...+. ..+..+....+.+ +.+++.
T Consensus 249 lD~~~~g---G~~ls~~~~~g~P-I~fig~ 274 (443)
T 3dm5_A 249 LDGSAKG---GGALSAVAATGAP-IKFIGT 274 (443)
T ss_dssp CSSCSSH---HHHHHHHHTTCCC-EEEEEC
T ss_pred CCCcccc---cHHHHHHHHHCCC-EEEEEc
Confidence 9987632 2344455556655 776765
No 441
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.79 E-value=2.2e-05 Score=86.35 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=42.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCCeEeCCcc------cCCceeEEEEeCCCCcc
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPDRVPVTIIDTSSSLE 71 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~Dt~G~~~ 71 (670)
..+..+|+|+|.||||||||+|+|++.......+++....+..... ...+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3466889999999999999999999987432333322121111110 23467899999999764
No 442
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.57 E-value=0.00041 Score=73.47 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=78.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHH------cCCC--CC-C--CCC----------CCCCeEeCC---------------cc
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PE-K--VPP----------VHAPTRLPP---------------DF 54 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~------~~~~--~~-~--~~~----------~~~~~~~~~---------------~~ 54 (670)
+...|+++|.+||||||++..|. +.+. .. + .++ ..+...... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999986 2221 00 0 000 000000000 01
Q ss_pred cCCceeEEEEeCCCCcc--ch-hhhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Q 005908 55 YPDRVPVTIIDTSSSLE--NK-GKLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126 (670)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~--~~-~~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D 126 (670)
...++.+.|+||||... .. .... ...-.+|.+++|+|........+ ....+.+. -.+..+|.||.|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEeccc
Confidence 12467899999999643 11 1111 11235699999999876543222 33344433 356789999999
Q ss_pred CCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchH
Q 005908 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (670)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 166 (670)
.... . .....+....+ .|+..++. |+++++
T Consensus 250 ~~a~-----~-G~als~~~~~g--~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 250 GTAK-----G-GGALSAVVATG--ATIKFIGT--GEKIDE 279 (433)
T ss_dssp GCSC-----H-HHHHHHHHHHT--CEEEEEEC--CSSSSC
T ss_pred cccc-----c-hHHHHHHHHHC--CCEEEEEC--CCChHh
Confidence 7632 1 12233334444 36766665 777753
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.45 E-value=0.0019 Score=65.16 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc------CCCCCCCCCCcc-----------cceEEEEEEcC-----------------
Q 005908 423 VFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-----------EQYAVNVVDQP----------------- 468 (670)
Q Consensus 423 ~~kI~ivG~~~vGKSSLin~l~~------~~~~~~~~~t~~-----------~~~~~~~vd~~----------------- 468 (670)
.-.|+++|++|+||||++..+.+ .........+.+ ....+.++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999873 222111101000 00001111100
Q ss_pred CCceEEEEEecCChhh--Hh-hhhc---hHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 005908 469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (670)
Q Consensus 469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~N 541 (670)
.....+.++|++|... .. .+.. .......+|.+++|+|++.+. +.....+.+.. ..| ..+|.|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------~~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-------ASKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-------TCTTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-------hCCCCEEEEe
Confidence 0234577889888644 21 1100 112345789999999987542 22223333332 245 678899
Q ss_pred CCCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 542 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
|+|.... ...+..+....+.+ +.+++ +| ++++
T Consensus 248 k~D~~~~---~g~~~~~~~~~~~p-i~~i~--~Ge~v~d 280 (297)
T 1j8m_F 248 KMDGTAK---GGGALSAVAATGAT-IKFIG--TGEKIDE 280 (297)
T ss_dssp CGGGCTT---HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred CCCCCcc---hHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence 9997642 33445566667765 77776 45 5543
No 444
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=9.6e-05 Score=74.78 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=57.6
Q ss_pred hHhhcccccEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCccc---HHHHHHHHHHhCCCC
Q 005908 491 NKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGIEP 566 (670)
Q Consensus 491 ~~~~~~~ad~vllv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 566 (670)
.+..+.++|.+++|+|+.++. +...+.+++...... ++|.++|+||+||.+.... .+...+..+..+.+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~- 152 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD- 152 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-
Confidence 345789999999999999764 333334444333322 6899999999999875321 22233333445764
Q ss_pred cEEeecccC-ChHHHHH
Q 005908 567 PIPVSMKSK-DLNNVFS 582 (670)
Q Consensus 567 ~~~vSA~~g-~v~~l~~ 582 (670)
++.+||++| |+++|++
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 999999998 8877665
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.44 E-value=0.00012 Score=73.95 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH------cCCC---CCC--CCCCC----------CCeEeCC---------------ccc
Q 005908 12 GVRVVVVGDRGTGKSSLIAAAA------TESV---PEK--VPPVH----------APTRLPP---------------DFY 55 (670)
Q Consensus 12 ~~kI~ivG~~~vGKSSLi~~l~------~~~~---~~~--~~~~~----------~~~~~~~---------------~~~ 55 (670)
.-.|+++|.+|+||||++..|. +.+. ..+ .+... +...+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5578899999999999999986 2221 000 01000 0000000 001
Q ss_pred CCceeEEEEeCCCCcc--chh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCC
Q 005908 56 PDRVPVTIIDTSSSLE--NKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLD 126 (670)
Q Consensus 56 ~~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D 126 (670)
..++.+.|+||||... ... .+. ..+..+|.+++|+|...... ..+ ..+.+.. ..| ..+|.||.|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~~---~~~i~gvVlnk~D 250 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFNQ---ASKIGTIIITKMD 250 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHHH---TCTTEEEEEECGG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHHh---hCCCCEEEEeCCC
Confidence 1567899999999766 321 221 23457899999999764322 111 2233332 355 678999999
Q ss_pred CCCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
.... ......+....+ .|+..++ .|++++++
T Consensus 251 ~~~~------~g~~~~~~~~~~--~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK------GGGALSAVAATG--ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT------HHHHHHHHHTTT--CCEEEEE--CSSSTTCE
T ss_pred CCcc------hHHHHHHHHHHC--cCEEEEe--CCCChhhc
Confidence 7532 122334455554 2565555 67777643
No 446
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.44 E-value=0.00017 Score=79.44 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=40.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcc---cceEEEEEEcC-CCceEEEEEecCCh
Q 005908 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG---EQYAVNVVDQP-GGNKKTLILQEIPE 482 (670)
Q Consensus 420 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~---~~~~~~~vd~~-g~~~~~~i~d~~g~ 482 (670)
....++|+|+|.||||||||+|+|+|........+|+. .......+..+ +....+.++||+|-
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 45678999999999999999999999875432222221 11211111121 23456778899885
No 447
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.39 E-value=0.00049 Score=72.87 Aligned_cols=137 Identities=15% Similarity=0.044 Sum_probs=74.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEE---------------c
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVD---------------Q 467 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~------~~~~~~~~~~t~~-------------~~~~~~~vd---------------~ 467 (670)
.+..|+++|++||||||++..|. +.........+.+ ....+.... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678999999999999999987 2222111000000 001110000 0
Q ss_pred CCCceEEEEEecCChhh-------HhhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 005908 468 PGGNKKTLILQEIPEEG-------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540 (670)
Q Consensus 468 ~g~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 540 (670)
......+.++||+|... ...+.... .....|.+++|+|++.+.. .......+... -.+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~-~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~------~~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY-DVLKPDDVILVIDASIGQK---AYDLASRFHQA------SPIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH-HHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH------CSSEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHH-HhhCCcceEEEEeCccchH---HHHHHHHHhcc------cCCcEEEE
Confidence 00134566788888422 11121111 2235689999999987633 23333444333 25678899
Q ss_pred eCCCCCCCcccHHHHHHHHHHhCCCCcEEeec
Q 005908 541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (670)
Q Consensus 541 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA 572 (670)
||+|.... ...+..+....+.| +.+++.
T Consensus 246 TKlD~~a~---~G~als~~~~~g~P-i~fig~ 273 (433)
T 3kl4_A 246 TKMDGTAK---GGGALSAVVATGAT-IKFIGT 273 (433)
T ss_dssp ECGGGCSC---HHHHHHHHHHHTCE-EEEEEC
T ss_pred eccccccc---chHHHHHHHHHCCC-EEEEEC
Confidence 99997752 33445555666765 777775
No 448
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.35 E-value=0.00053 Score=76.59 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 005908 424 FRCLLFGPQNAGKSALLNSFLERP 447 (670)
Q Consensus 424 ~kI~ivG~~~vGKSSLin~l~~~~ 447 (670)
..|+|+|++|+|||||++.+.|-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999874
No 449
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=97.20 E-value=0.0014 Score=59.69 Aligned_cols=137 Identities=17% Similarity=0.292 Sum_probs=94.5
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCC-CCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (670)
Q Consensus 189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~-~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~ 267 (670)
.+.+.....++++|...|.+++|.++..++...-.. ++. .+...++..+.... +..++++.|+.++...
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~~---------dg~i~~~eF~~~~~~~ 87 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAA-MGRLNVKNEELDAMIKEA---------SGPINFTVFLTMFGEK 87 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHC---------CCCcCHHHHHHHHHHH
Confidence 345666778999999999999999999999876554 355 66776666665431 5669999999886533
Q ss_pred HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (670)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 347 (670)
.... ...+.++..|+.||.|++|.|+..|+..++... +
T Consensus 88 ~~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g 125 (166)
T 2mys_B 88 LKGA-----------------------------------------DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-G 125 (166)
T ss_pred hccC-----------------------------------------CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHc-C
Confidence 2100 113567889999999999999999999998764 2
Q ss_pred CCCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908 348 SPWDE---APYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 348 ~p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
.+... .........+..|.|++..|+..+.
T Consensus 126 ~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~ 158 (166)
T 2mys_B 126 GRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158 (166)
T ss_pred CCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence 22211 1111223446677888877776654
No 450
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.15 E-value=0.0005 Score=76.81 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 005908 14 RVVVVGDRGTGKSSLIAAAATES 36 (670)
Q Consensus 14 kI~ivG~~~vGKSSLi~~l~~~~ 36 (670)
.|+|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 451
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=97.13 E-value=0.0011 Score=59.68 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=98.7
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (670)
Q Consensus 188 ~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~ 267 (670)
....+.....+.++|...|.+++|.++.+++...-.. .+..+...++..+...+... .+..++.+.|+.+....
T Consensus 15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~ 88 (161)
T 3fwb_A 15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDSE-----GRHLMKYDDFYIVMGEK 88 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSCEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcC-----CCCeEeHHHHHHHHHHH
Confidence 3466778889999999999999999999998876554 56778888877777665322 24459999998886643
Q ss_pred HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (670)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 347 (670)
.... ...+.++..|+.+|.|++|.++.+|+..++.....
T Consensus 89 ~~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~ 127 (161)
T 3fwb_A 89 ILKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGE 127 (161)
T ss_dssp HHTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred HhcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCC
Confidence 3211 12456788999999999999999999998875421
Q ss_pred -CC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908 348 -SP-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 348 -~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
.+ ............+..|.|++..|+..+
T Consensus 128 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 158 (161)
T 3fwb_A 128 TLTDEELRAMIEEFDLDGDGEINENEFIAIC 158 (161)
T ss_dssp CCCHHHHHHHHHTTCSSSSSSEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 11 001111122334566778887776654
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.05 E-value=0.0015 Score=67.45 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=54.7
Q ss_pred hcccccEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHH---HhCCCCcEE
Q 005908 494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ---ELGIEPPIP 569 (670)
Q Consensus 494 ~~~~ad~vllv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~ 569 (670)
...++|.+++|... ++ .+...+.+++...... ++|.++|+||+||.+... .+..+++.. ..+++ ++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EEE
Confidence 46899999988554 45 3444445554444333 688899999999987432 112333333 45665 899
Q ss_pred eecccC-ChHHHHHHH
Q 005908 570 VSMKSK-DLNNVFSRI 584 (670)
Q Consensus 570 vSA~~g-~v~~l~~~l 584 (670)
+||++| |++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 999999 999887643
No 453
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=97.05 E-value=0.0012 Score=58.70 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.++....+.++|...|.+++|.++.+++...-.. .+..+...++..+...+... .+..++.+.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 78 (153)
T 3ox6_A 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL 78 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence 45667788999999999999999999998876543 46678888888877766533 2445999999988654331
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.... .....+.++.+|+.+|.|++|.++.+|+..++...-+.+
T Consensus 79 ~~~~-------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 121 (153)
T 3ox6_A 79 AETA-------------------------------------DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ 121 (153)
T ss_dssp TCCH-------------------------------------HHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred cccc-------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 1110 112245688899999999999999999998887522222
Q ss_pred CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908 350 WDEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
.... ........+..|.|++..|+..+
T Consensus 122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp CCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 2111 11112334567778777776543
No 454
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=97.04 E-value=0.0016 Score=58.76 Aligned_cols=147 Identities=17% Similarity=0.246 Sum_probs=98.9
Q ss_pred cccccccHHHHHHHHHHHHHhCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908 185 HDEQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (670)
Q Consensus 185 ~~~~~~~~~~~~~l~ri~~~~d~~~-~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~ 263 (670)
.....+.+.....++++|...|.++ +|.++.+++...-.. .+..+...++..+.+.+... .+..++.+.|+.+
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~~-----~~g~i~~~eF~~~ 80 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVM 80 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHH
Confidence 3344566777888999999999999 999999998876554 46677777777776655322 2455999999988
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (670)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~ 343 (670)
......... .....+.++.+|+.+|.|++|.|+.+|+..++.
T Consensus 81 ~~~~~~~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~ 122 (161)
T 1dtl_A 81 MVRSMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ 122 (161)
T ss_dssp HHHHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGT
T ss_pred HHHHhcccc--------------------------------------cchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 765541000 112345688999999999999999999999887
Q ss_pred cCCCCCCCCC---CCCCCccccCCCccchhhhHhhh
Q 005908 344 TAPESPWDEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 344 ~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
... .+.... ........+..|.|++..|+..+
T Consensus 123 ~~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 157 (161)
T 1dtl_A 123 ATG-ETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157 (161)
T ss_dssp TC---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred HhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 642 111111 11112233566777777776654
No 455
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=96.99 E-value=0.00073 Score=59.69 Aligned_cols=134 Identities=15% Similarity=0.282 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (670)
Q Consensus 192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (670)
++....++++|...|.+++|.++..++...-.. ++..+...++..+... .+..++.+.|+.++......
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~- 71 (143)
T 3j04_B 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS-MGKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG- 71 (143)
T ss_dssp HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH-TSCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence 455678899999999999999999998876544 4556666665554432 45679999999885522100
Q ss_pred CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (670)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~ 351 (670)
....+.++..|+.||.|++|.++.+|+..++.... .+..
T Consensus 72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-~~~~ 110 (143)
T 3j04_B 72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG-DRFT 110 (143)
T ss_dssp ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSS-SCCC
T ss_pred ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC-CCCC
Confidence 01124678899999999999999999988887542 1111
Q ss_pred C---CCCCCCccccCCCccchhhhHhhhh
Q 005908 352 E---APYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 352 ~---~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
. .........+..|.|++..|+....
T Consensus 111 ~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 111 DEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp HHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 1 1111122345667777777766543
No 456
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=96.97 E-value=0.0039 Score=55.13 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (670)
Q Consensus 191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 270 (670)
.+.....++++|...|.+++|.++..++...-.. .+..+...++..+.+.+...- .+...++.+.|+.++......
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~~~d---~~~g~i~~~eF~~~~~~~~~~ 78 (149)
T 2mys_C 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPSKEE---MNAAAITFEEFLPMLQAAANN 78 (149)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhhhcc---ccCCcCcHHHHHHHHHHHhcc
Confidence 3556677899999999999999999998765433 466777777777776651111 222559999998886543200
Q ss_pred CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCC
Q 005908 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW 350 (670)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~ 350 (670)
. .......++..|+.+|.|++|.++.+|+..++..... +.
T Consensus 79 ~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~ 118 (149)
T 2mys_C 79 K---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-KM 118 (149)
T ss_pred C---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCC-CC
Confidence 0 1122456888999999999999999999999876421 21
Q ss_pred CCC---CCCCCccccCCCccchhhhHhhh
Q 005908 351 DEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 351 ~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
... ..... ..+..|.+++..|+..+
T Consensus 119 ~~~~~~~~~~~-d~~~dg~i~~~eF~~~~ 146 (149)
T 2mys_C 119 TEEEVEELMKG-QEDSNGCINYEAFVKHI 146 (149)
T ss_pred CHHHHHHHHhh-CCCCCCcEeHHHHHHHH
Confidence 111 11122 44566777777776654
No 457
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0039 Score=56.47 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
..++....++++|...|.+++|.++..|+...-.. .+..+...++..+.+.+... .+..++.+.|+.+.....
T Consensus 21 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~- 93 (166)
T 2aao_A 21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADVD-----NSGTIDYKEFIAATLHLN- 93 (166)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCTT-----CCSSBCHHHHHHHHTTCH-
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHh-
Confidence 34556677899999999999999999999776555 46777777777666655322 244588899887742110
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.....+.++.+|+.+|.|++|.++.+|+..++......+
T Consensus 94 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~ 132 (166)
T 2aao_A 94 -----------------------------------------KIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVED 132 (166)
T ss_dssp -----------------------------------------HHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-----
T ss_pred -----------------------------------------hcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 001123578899999999999999999999988653212
Q ss_pred CCCCCCCCCccccCCCccchhhhHhhhh
Q 005908 350 WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
............+..|.|++..|+....
T Consensus 133 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 133 VRIEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp ---CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 2111122233446677888887777654
No 458
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=96.86 E-value=0.0016 Score=59.32 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=96.8
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (670)
Q Consensus 189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (670)
.+.++....++++|...|.+++|.++..|+...-. .++..+...++..+...+... .+..++.+.|+.+.....
T Consensus 21 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~ 94 (169)
T 3qrx_A 21 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR-ALGFEPKKEEIKKMISEIDKD-----GSGTIDFEEFLTMMTAKM 94 (169)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHH-HTSCCCCHHHHHHHHHHHCSS-----SSSSEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCC-----CCCcCCHHHHHHHHHHHh
Confidence 45667788899999999999999999999976653 456777887777776665322 244599999998866433
Q ss_pred HcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCC
Q 005908 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (670)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 348 (670)
. .....+.++.+|+.+|.|++|.++.+|+..++.... .
T Consensus 95 ~-----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~ 132 (169)
T 3qrx_A 95 G-----------------------------------------ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG-E 132 (169)
T ss_dssp H-----------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTT-C
T ss_pred c-----------------------------------------ccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC-C
Confidence 1 112345677889999999999999999988887542 1
Q ss_pred CCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908 349 PWDE---APYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 349 p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
+... .........+..|.|++..|+..+.
T Consensus 133 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 133 NLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp CCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 1111 1111123346677777777776654
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.85 E-value=0.0048 Score=71.00 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATE 35 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~ 35 (670)
..-.|+++|+||||||++++.+...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999988654
No 460
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=96.85 E-value=0.0019 Score=59.03 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhc---CCCCCHHH-HHHHH-----HHHhhhcCCCcccCCcChhhHHH
Q 005908 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK-----RVVQEKQHDGVNDLGLTLSGFLF 262 (670)
Q Consensus 192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~---~~~l~~~~-~~~l~-----~~l~~~~~~~~~~~~~~~~~f~~ 262 (670)
++..+.++++|...|.+++|.++.+|+...-.... +..+...+ +..+. .++... . .+..++.+.|+.
T Consensus 2 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-D---~~g~i~~~EF~~ 77 (174)
T 1q80_A 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV-A---GGKGIDETTFIN 77 (174)
T ss_dssp HHHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGT-T---TTSCEEHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhc-C---CCCeEcHHHHHH
Confidence 34567789999999999999999999887655433 35666655 54432 222222 1 455699999998
Q ss_pred HHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhh
Q 005908 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF 342 (670)
Q Consensus 263 ~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f 342 (670)
++....... .......+.++.+|+.+|.|++|.|+.+|+..++
T Consensus 78 ~~~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l 120 (174)
T 1q80_A 78 SMKEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120 (174)
T ss_dssp HHHHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 766443200 0112234678899999999999999999998888
Q ss_pred ccCCCCCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908 343 LTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
......+............+..|.|++..|+..+.
T Consensus 121 ~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 155 (174)
T 1q80_A 121 GMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155 (174)
T ss_dssp HHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence 76521111111111223346677787777766553
No 461
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.82 E-value=0.0002 Score=77.66 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=65.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCCCCC-eEeCCcccCCceeEEEEeCCCCcc--chhhh--------HH
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLE--NKGKL--------NE 78 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~--------~~ 78 (670)
...++|+++|.+|+||||+.++|...-.....++..-. ..+............+||..|.+. ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999754321111110000 001111112223456789888632 22222 45
Q ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Q 005908 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126 (670)
Q Consensus 79 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D 126 (670)
++..+++.++|+|.++. +.+... .|...+++. ..+++++-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEECC
Confidence 66668899999999887 344443 477777766 455555544443
No 462
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=96.77 E-value=0.0023 Score=56.67 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCC
Q 005908 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (670)
Q Consensus 193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 272 (670)
+....++++|...|.+++|.++..|+...-.. .+..+...++..+...+... .+..++++.|+.++.....
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~~--- 73 (143)
T 2obh_A 3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEIDKE-----GTGKMNFGDFLTVMTQKMS--- 73 (143)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHTTT-----CCSEEEHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCeeeHHHHHHHHHHHhc---
Confidence 44667899999999999999999998766543 46677777777766544322 2445999999988543221
Q ss_pred ccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC-C
Q 005908 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-W 350 (670)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p-~ 350 (670)
.....+-++..|+.||.|++|.++..|+..++...- ..+ .
T Consensus 74 --------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ 115 (143)
T 2obh_A 74 --------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE 115 (143)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHH
T ss_pred --------------------------------------cccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence 011234578899999999999999999998886531 111 0
Q ss_pred CCCCCCCCccccCCCccchhhhHhh
Q 005908 351 DEAPYKDAAETTALGNLTLKGFVSK 375 (670)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (670)
...........+..|.|++..|+..
T Consensus 116 ~~~~~~~~~D~d~dG~I~~~eF~~~ 140 (143)
T 2obh_A 116 ELQEMIDEADRDGDGEVSEQEFLRI 140 (143)
T ss_dssp HHHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 0000111223456677777776654
No 463
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.77 E-value=0.0015 Score=57.50 Aligned_cols=135 Identities=18% Similarity=0.310 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCC
Q 005908 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 272 (670)
Q Consensus 193 ~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 272 (670)
+....++++|...|.+++|.++.+++...-.. ++..+...++..+.+.+... .+..++.+.|+.+........
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~~~- 75 (142)
T 2bl0_C 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADAT-----GNGKIQFPEFLSMMGRRMKQT- 75 (142)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCcC-----CCCeeeHHHHHHHHHHHhcCC-
Confidence 44667899999999999999999998876544 46777877777766655322 234599999998866432100
Q ss_pred ccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC
Q 005908 273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352 (670)
Q Consensus 273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~ 352 (670)
...+.++.+|+.+|.|++|.++.+|+..++.... .+...
T Consensus 76 ----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~ 114 (142)
T 2bl0_C 76 ----------------------------------------TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLG-DRLKP 114 (142)
T ss_dssp ----------------------------------------CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSS-SCCCH
T ss_pred ----------------------------------------ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC-CCCCH
Confidence 1134688899999999999999999998887541 11111
Q ss_pred C---CCCCCccccCCCccchhhhHhhh
Q 005908 353 A---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 353 ~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
. ....... +..|.+++..|+..+
T Consensus 115 ~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 115 HEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 1 1111223 566777777766543
No 464
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=96.68 E-value=0.0053 Score=57.10 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHHHhhhc-----CCCc-ccCCcChhhH
Q 005908 191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ-----HDGV-NDLGLTLSGF 260 (670)
Q Consensus 191 ~~~~~~~l~ri~~~~-d~~~~~~l~~~el~~~q~~~~---~~~l~~~~~~~l~~~l~~~~-----~~~~-~~~~~~~~~f 260 (670)
.+...+.++++|... |.+++|.++.+|+...-.... +.......+..+...+.... .... .+..++.+.|
T Consensus 7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 86 (191)
T 2ccm_A 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86 (191)
T ss_dssp CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence 456677889999999 999999999999987766553 66677777777663222210 0111 2445999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhh
Q 005908 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (670)
Q Consensus 261 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~ 340 (670)
+.++........ + | ..+.......++.+|+.+|.|++|.++.+|+..
T Consensus 87 ~~~~~~~~~~~~-----------~------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~ 133 (191)
T 2ccm_A 87 LKMWAECVKSVE-----------K------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133 (191)
T ss_dssp HHHHHHHHHHHH-----------T------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred HHHHHHHhcccc-----------c------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 887654321000 0 0 001223456788999999999999999999988
Q ss_pred hhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908 341 LFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 341 ~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
++.... .+ -...........+..|.|++..|+...
T Consensus 134 ~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 169 (191)
T 2ccm_A 134 VYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLW 169 (191)
T ss_dssp HHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHH
T ss_pred HHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 886532 11 000001112233556677776665544
No 465
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=96.68 E-value=0.001 Score=62.65 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=92.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.+.....+.++|...|.+++|.++..++...-.. ++..+...++..+...+ +..++++.|+.++.....
T Consensus 51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~~ 120 (196)
T 3dtp_E 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDS-LGRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRIA 120 (196)
T ss_dssp SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHT-TSCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHhc
Confidence 44556678999999999999999999998776543 46677777766665543 556999999988542110
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.......++..|+.||.|++|.|+..|+..++ .. +.+
T Consensus 121 -----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~-g~~ 157 (196)
T 3dtp_E 121 -----------------------------------------GTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW-GEK 157 (196)
T ss_dssp -----------------------------------------SSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS-SSC
T ss_pred -----------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc-CCC
Confidence 00113467889999999999999999999999 43 222
Q ss_pred CCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908 350 WDE---APYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
... ..+......+..|.|++..|+....
T Consensus 158 ~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 158 FSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp CCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred CCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 221 1111233446677787777766544
No 466
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.67 E-value=0.0027 Score=64.86 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=76.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHcCC--------CCCCCCCC-------------CCCeEeCCccc-------------
Q 005908 10 RTGVRVVVVGDRGTGKSSLIAAAATES--------VPEKVPPV-------------HAPTRLPPDFY------------- 55 (670)
Q Consensus 10 ~~~~kI~ivG~~~vGKSSLi~~l~~~~--------~~~~~~~~-------------~~~~~~~~~~~------------- 55 (670)
.+.--|+|+|++||||||+++.|.+.. +....... .+...+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456789999999999999999987421 00000000 00000000000
Q ss_pred --CCceeEEEEeCCCCccchhh-hH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Q 005908 56 --PDRVPVTIIDTSSSLENKGK-LN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL 127 (670)
Q Consensus 56 --~~~~~~~i~Dt~G~~~~~~~-~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl 127 (670)
..+..+.++||+|....... .. ...-..|-.+++.|..... ++.+ ....+.+. -...+++.||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence 12356778999997543221 11 1122478999999976553 2221 33333322 2234788999996
Q ss_pred CCCCCccchhhhhhHHHHHhccCCeEEEeCcccCCCchHH
Q 005908 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (670)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 167 (670)
.... -.+..+....+ .|+..++ +|++++++
T Consensus 281 ~a~~------G~~l~~~~~~~--~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DARG------GAALSISYVID--APILFVG--VGQGYDDL 310 (328)
T ss_dssp CSCC------HHHHHHHHHHT--CCEEEEE--CSSSTTCE
T ss_pred ccch------hHHHHHHHHHC--CCEEEEe--CCCCcccc
Confidence 4321 22334455555 2566666 77777553
No 467
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=96.66 E-value=0.003 Score=60.93 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=93.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcC---CCcc-cCCcChhhHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH---DGVN-DLGLTLSGFLFLHA 265 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~---~~~~-~~~~~~~~f~~~~~ 265 (670)
..++....++++|...|.+++|.++.+|+...-...++......++..+...+-..+. ...+ +..++++.|+.+..
T Consensus 45 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~ 124 (226)
T 2lvv_A 45 KDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRL 124 (226)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHH
Confidence 3456677889999999999999999999988555556666666666666555411110 0011 33488899988522
Q ss_pred HHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908 266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (670)
Q Consensus 266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 345 (670)
.... ......++.+|+.||.|++|.|+.+|+..++...
T Consensus 125 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 162 (226)
T 2lvv_A 125 MLCY------------------------------------------IYDIFELTVMFDTMDKDGSLLLELQEFKEALPKL 162 (226)
T ss_dssp HHHH------------------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHH
T ss_pred HHHh------------------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHH
Confidence 1110 0112467889999999999999999999988643
Q ss_pred --CCCCCC-CCCCCCCccccCCCccchhhhHhhhh
Q 005908 346 --PESPWD-EAPYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 346 --~~~p~~-~~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
.+.+-. ..........+..|.|++..|+....
T Consensus 163 ~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~ 197 (226)
T 2lvv_A 163 KEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAV 197 (226)
T ss_dssp HHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 122211 11112223446677788777666543
No 468
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=96.65 E-value=0.0027 Score=58.12 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHH---hhhhcCCCCCHHHHHHHH--------HHHhhhcCCCcccCCcChhhH
Q 005908 192 PRCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGF 260 (670)
Q Consensus 192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~---q~~~~~~~l~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~f 260 (670)
++..+.++++|...|.+++|.++.+|+... -...++..+...++..+. .++...-.+ .+..++.+.|
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d--~dg~i~~~Ef 80 (176)
T 1nya_A 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVG--SDGSLTEEQF 80 (176)
T ss_dssp SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSC--TTCCBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEcHHHH
Confidence 355678899999999999999999999875 234577888888888665 333333222 2445999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhh
Q 005908 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (670)
Q Consensus 261 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~ 340 (670)
+.+..........+ .+.......++.+|+.+|.|++|.++.+|+..
T Consensus 81 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~ 126 (176)
T 1nya_A 81 IRVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAA 126 (176)
T ss_dssp HHHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred HHHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 98866543211100 01111245677888888888888888888877
Q ss_pred hhccC
Q 005908 341 LFLTA 345 (670)
Q Consensus 341 ~f~~~ 345 (670)
++...
T Consensus 127 ~l~~~ 131 (176)
T 1nya_A 127 WLTAL 131 (176)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77653
No 469
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=96.65 E-value=0.0037 Score=55.15 Aligned_cols=137 Identities=20% Similarity=0.345 Sum_probs=95.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.+.....++++|...|.+++|.++.+++...-.. .+..+...++..+...+... .+..++.+.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 78 (147)
T 4ds7_A 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDVD-----GNHAIEFSEFLALMSRQLK 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSEEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhccC-----CCCcCcHHHHHHHHHHhcc
Confidence 45677788999999999999999999998876554 56677888877777665322 2445999999988653321
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.....+.++..|+.+|.|++|.++.+|+..++..... +
T Consensus 79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~-~ 116 (147)
T 4ds7_A 79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-K 116 (147)
T ss_dssp -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-C
T ss_pred -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCC-C
Confidence 1123456788999999999999999999999885421 1
Q ss_pred CCCC---CCCCCccccCCCccchhhhHhh
Q 005908 350 WDEA---PYKDAAETTALGNLTLKGFVSK 375 (670)
Q Consensus 350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~ 375 (670)
.... ....... +..|.+++..|+..
T Consensus 117 ~~~~~~~~~~~~~d-~~dg~i~~~eF~~~ 144 (147)
T 4ds7_A 117 LTDAEVDEMLREVS-DGSGEINIKQFAAL 144 (147)
T ss_dssp CCHHHHHHHHHHHS-SSCSSEEHHHHHHH
T ss_pred CCHHHHHHHHHHhc-CCCCcCcHHHHHHH
Confidence 1111 1111223 56677777766654
No 470
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=96.62 E-value=0.003 Score=56.64 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=90.7
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHH
Q 005908 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (670)
Q Consensus 189 ~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (670)
.+.++....++++|...|.+++|.++.+++...-... +..+...++..+.. . .+..++++.|+.++....
T Consensus 11 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~ 80 (156)
T 1wdc_B 11 KLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKL 80 (156)
T ss_dssp -CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHh
Confidence 3456677889999999999999999999998766543 66677766666553 1 255699999998865332
Q ss_pred HcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCC
Q 005908 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (670)
Q Consensus 269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 348 (670)
... ...+.++..|+.||.|++|.++.+|+..++... +.
T Consensus 81 ~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~ 118 (156)
T 1wdc_B 81 SGT-----------------------------------------DSEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GD 118 (156)
T ss_dssp CSC-----------------------------------------CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SS
T ss_pred cCC-----------------------------------------ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CC
Confidence 100 012457889999999999999999999888764 21
Q ss_pred CCCCC---CCCCCccccCCCccchhhhHhhh
Q 005908 349 PWDEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 349 p~~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
+.... ........+ .|.|++..|+...
T Consensus 119 ~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~ 148 (156)
T 1wdc_B 119 NFNKDEMRMTFKEAPVE-GGKFDYVKFTAMI 148 (156)
T ss_dssp CCCHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCC-CCEEeHHHHHHHH
Confidence 21111 011112334 6677776666554
No 471
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=96.60 E-value=0.012 Score=54.00 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHH--------HhhhcCCCcccCCcChhh
Q 005908 192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG 259 (670)
Q Consensus 192 ~~~~~~l~ri~~~~-d~~~~~~l~~~el~~~q~~~~---~~~l~~~~~~~l~~~--------l~~~~~~~~~~~~~~~~~ 259 (670)
+...+.++++|... |.+++|.++.+|+...-.... +..+...+++.+... +...-.+ .+..++.+.
T Consensus 4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~dG~I~~~E 81 (185)
T 2sas_A 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADIN--KDDVVSWEE 81 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTT--CSSCEEHHH
T ss_pred HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeEcHHH
Confidence 45677889999999 999999999999876655432 246677777766433 3332221 244599999
Q ss_pred HHHHHHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHh
Q 005908 260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE 339 (670)
Q Consensus 260 f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~ 339 (670)
|+.++......... + ........+.++.+|+.+|.|++|.|+.+|+.
T Consensus 82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~ 128 (185)
T 2sas_A 82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ 128 (185)
T ss_dssp HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence 99887655432100 0 00012234678999999999999999999999
Q ss_pred hhhccCCCCC-CCCCCCCCCccccCCCccchhhhHhhhh
Q 005908 340 DLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 340 ~~f~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
.++.... .| ............+..|.|++..|+....
T Consensus 129 ~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~ 166 (185)
T 2sas_A 129 NYCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY 166 (185)
T ss_dssp HHTTSSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 9987542 22 1111111223446677777776665543
No 472
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=96.59 E-value=0.0028 Score=57.25 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHhh---hhcCCCCCHHHHHHHH--------HHHhhhcCCCcccCCcChhhHHHH
Q 005908 195 VRALKRIFIICDHDMDGALNDAELNEFQV---KCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFL 263 (670)
Q Consensus 195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~---~~~~~~l~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~f~~~ 263 (670)
.+.++++|...|.+++|.++.+|+...-. ...+..++..++..+. ..+...-.+ .+..++.+.|+.+
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~~g~i~~~ef~~~ 80 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD--GDQRITREEFVTG 80 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SSSCEEHHHHHHT
T ss_pred HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCcHHHHHHH
Confidence 35678999999999999999999987643 3457788888887775 333333222 2345999999887
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (670)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~ 343 (670)
.......... .+.....+.++.+|+.+|.|++|.++.+|+..++.
T Consensus 81 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~ 125 (166)
T 3akb_A 81 AVKRLRDKPD-----------------------------------RFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125 (166)
T ss_dssp HHHHHHHSHH-----------------------------------HHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHH
T ss_pred HHHHhccCcc-----------------------------------chHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 6544321100 01112244578899999999999999999888876
Q ss_pred cCCCCC-CCCCCCCCCccccCCCccchhhhHhhh
Q 005908 344 TAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 344 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
... .+ ............+..|.|++..|+...
T Consensus 126 ~~~-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 158 (166)
T 3akb_A 126 AFG-VPEDLARQAAAALDTDGDGKVGETEIVPAF 158 (166)
T ss_dssp HTT-CCHHHHHHHHHHHCTTCSSBCCHHHHHHHH
T ss_pred HhC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 542 11 000011112233566677776666544
No 473
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=96.58 E-value=0.0039 Score=55.37 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=90.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.++....++++|...|.+++|.++..|+...-.. .+..+...++..+...+... .+..++++.|+.++.....
T Consensus 4 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 77 (148)
T 1exr_A 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLSLMARKMK 77 (148)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT-----CSSSEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHHCCC-----CCCcCcHHHHHHHHHhccc
Confidence 34556677899999999999999999998776544 45666777766665544221 2345899999887643221
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.....+-++..|+.||.|++|.++..|+..++...- .+
T Consensus 78 -----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~ 115 (148)
T 1exr_A 78 -----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLG-EK 115 (148)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTT-CC
T ss_pred -----------------------------------------CCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC-CC
Confidence 012234577899999999999999999988887542 11
Q ss_pred CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908 350 WDEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
.... ..-.....+..|.|++..|+...
T Consensus 116 ~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1exr_A 116 LTDDEVDEMIREADIDGDGHINYEEFVRMM 145 (148)
T ss_dssp CCHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 1110 01111233566777777666543
No 474
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.57 E-value=0.0042 Score=63.46 Aligned_cols=142 Identities=11% Similarity=0.139 Sum_probs=75.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------CCCcc-----------cceEEEEEEcC-C--------------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY------APTTG-----------EQYAVNVVDQP-G-------------- 469 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------~~t~~-----------~~~~~~~vd~~-g-------------- 469 (670)
.+-.++++|++||||||+++.+.+....... ..+.+ ....+..+.-. +
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4568999999999999999998853211100 01100 00000011000 0
Q ss_pred --CceEEEEEecCChhhH-----hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 005908 470 --GNKKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542 (670)
Q Consensus 470 --~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK 542 (670)
......++|++|.... ..+. .....-..|-.+++.|++.+ +++......+.+.. ...++++||
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~-~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~------~it~iilTK 277 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMK-KIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV------KIDGIILTK 277 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHH-HHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS------CCCEEEEEC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHH-HHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc------CCCEEEEeC
Confidence 0123445788874221 1111 11112347889999998765 33444445544331 234677899
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCcEEeecccC-ChHH
Q 005908 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (670)
Q Consensus 543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-~v~~ 579 (670)
.|-... .-.+..+....+.+ +.+++ +| ++++
T Consensus 278 lD~~a~---~G~~l~~~~~~~~p-i~~i~--~Ge~v~d 309 (328)
T 3e70_C 278 LDADAR---GGAALSISYVIDAP-ILFVG--VGQGYDD 309 (328)
T ss_dssp GGGCSC---CHHHHHHHHHHTCC-EEEEE--CSSSTTC
T ss_pred cCCccc---hhHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence 996432 23345666777866 88877 55 5543
No 475
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.50 E-value=0.0098 Score=63.19 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=63.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHH-------cCCC---CCC--CCCCC----------CCeEeCC---------------c
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAA-------TESV---PEK--VPPVH----------APTRLPP---------------D 53 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~-------~~~~---~~~--~~~~~----------~~~~~~~---------------~ 53 (670)
+...|+++|.+||||||++..|. +.+. ..+ .+... +...+.. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999987 3331 111 11000 0000000 0
Q ss_pred ccCCceeEEEEeCCCCccchh-hhH-----HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEeCCC
Q 005908 54 FYPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLD 126 (670)
Q Consensus 54 ~~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D 126 (670)
....++.+.|+||||...... ... ..+..++.+++|+|......... ....+.. ..+ .-+|.||.|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D 251 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVD 251 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCC
Confidence 112467899999999654322 221 22457899999999875533221 2222322 244 347999999
Q ss_pred CCC
Q 005908 127 LRG 129 (670)
Q Consensus 127 l~~ 129 (670)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 476
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=96.49 E-value=0.0061 Score=63.40 Aligned_cols=114 Identities=22% Similarity=0.355 Sum_probs=84.3
Q ss_pred ccccccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908 184 DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (670)
Q Consensus 184 ~~~~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~ 263 (670)
.+....+.++....++++|...|.++++.++.+|+...-+ .++..++..+++.+.+.+... .+..++++.|+.+
T Consensus 290 ePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLr-sLG~~~TeeEI~~Lf~~~D~D-----gDG~IdFeEFl~l 363 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAELQDMINEVDAD-----GDGTIDFPEFLIM 363 (440)
T ss_dssp CCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHCSS-----CSSSEEHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHH
Confidence 3445567788999999999999999999999999987654 357788888888877665432 2445899999877
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (670)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~ 343 (670)
+..... . ....+-++..|+.||.|++|.|+.+|+..++.
T Consensus 364 ms~~lk---~--------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~ 402 (440)
T 3u0k_A 364 MARKMK---D--------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMT 402 (440)
T ss_dssp HHTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHhc---C--------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHHH
Confidence 431110 0 00123578899999999999999999988876
Q ss_pred c
Q 005908 344 T 344 (670)
Q Consensus 344 ~ 344 (670)
.
T Consensus 403 ~ 403 (440)
T 3u0k_A 403 N 403 (440)
T ss_dssp H
T ss_pred H
Confidence 4
No 477
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=96.45 E-value=0.0085 Score=53.38 Aligned_cols=107 Identities=22% Similarity=0.358 Sum_probs=79.8
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (670)
Q Consensus 188 ~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~ 267 (670)
..+.+.....++++|...|.+++|.++..++...-.. ++..+...++..+...+ +..++++.|+.++...
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~---------~g~i~~~eF~~~~~~~ 77 (153)
T 2ovk_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLKEC---------PGQLNFTAFLTLFGEK 77 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTT-TTSCCCHHHHHHHHHHS---------SSCCCSHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------CCCCCHHHHHHHHHHH
Confidence 3456777888999999999999999999998876443 45677777777776654 5568888988763210
Q ss_pred HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (670)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 345 (670)
. + .....+.++..|+.||.|++|.++..|+..++...
T Consensus 78 ~----------------------------~-------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 114 (153)
T 2ovk_B 78 V----------------------------S-------------GTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM 114 (153)
T ss_dssp T----------------------------T-------------TCCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHS
T ss_pred h----------------------------c-------------cCChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc
Confidence 0 0 00012357889999999999999999999988764
No 478
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=96.42 E-value=0.015 Score=52.23 Aligned_cols=108 Identities=23% Similarity=0.364 Sum_probs=78.3
Q ss_pred cccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHH
Q 005908 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 266 (670)
Q Consensus 187 ~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~ 266 (670)
...++++....++.+|...|.+++|.++..|+...-+ .++..+...++..+.. .. +..++++.|+.++..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~---~~------~~~i~f~ef~~~~~~ 76 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFS-SLGRVPPDDELNAMLK---EC------PGQLNFTAFLTLFGE 76 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHH-HTTSCCCHHHHHHHHH---TS------SSCCCSHHHHHTTTT
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHH-HcCCCccHHHHHHHHH---hc------cCCccHHHHHHHHHh
Confidence 3457788888999999999999999999999876654 4566777766665543 11 334777777766321
Q ss_pred HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (670)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 345 (670)
.. . . ....+-|+..|+.||.|++|.++..|+..++...
T Consensus 77 ~~----------------------------~-----~--------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~ 114 (153)
T 3i5g_B 77 KV----------------------------S-----G--------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM 114 (153)
T ss_dssp TT----------------------------T-----T--------CCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSS
T ss_pred hh----------------------------c-----c--------cccHHHHHHHHhccccCCCCeEeHHHHHHHHHHc
Confidence 00 0 0 0013468999999999999999999999998763
No 479
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=96.41 E-value=0.0013 Score=59.36 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHHHHHhC--CCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICD--HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d--~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~ 267 (670)
+.++....++++|...| .+++|.++..++...-.. ++..+...++..+...+. . .+..++++.|+.++...
T Consensus 3 ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~d----~--~~g~i~~~eF~~~~~~~ 75 (159)
T 2ovk_C 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRC-LGMNPTEAQVHQHGGTKK----M--GEKAYKLEEILPIYEEM 75 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHH-TTCCCCHHHHHHTTCCSS----T--TSCEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhc----C--CCCeEcHHHHHHHHHHH
Confidence 34566788999999999 999999999998776543 456667666655444331 1 24569999998875321
Q ss_pred HHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCC
Q 005908 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (670)
Q Consensus 268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 347 (670)
.... .....+-++..|+.||.|++|.++..|+..++...-
T Consensus 76 ~~~~---------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g- 115 (159)
T 2ovk_C 76 SSKD---------------------------------------TGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG- 115 (159)
T ss_dssp TTCS---------------------------------------TTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSS-
T ss_pred hhcc---------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC-
Confidence 1000 001234678899999999999999999998887542
Q ss_pred CCCCC---CCCCC--CccccCCCccchhhhHhhhhhhhc
Q 005908 348 SPWDE---APYKD--AAETTALGNLTLKGFVSKWALMTL 381 (670)
Q Consensus 348 ~p~~~---~~~~~--~~~~~~~~~~~~~~~l~~w~~~~~ 381 (670)
.+... ..... ....+..|.|++..|+........
T Consensus 116 ~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~ 154 (159)
T 2ovk_C 116 ERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp SCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhcCCC
Confidence 11111 11112 233466778888777766554433
No 480
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.39 E-value=0.02 Score=65.84 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC
Q 005908 11 TGVRVVVVGDRGTGKSSLIAAAATE 35 (670)
Q Consensus 11 ~~~kI~ivG~~~vGKSSLi~~l~~~ 35 (670)
..-.++|+|+||||||++++.+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998753
No 481
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=96.38 E-value=0.0067 Score=54.47 Aligned_cols=142 Identities=17% Similarity=0.267 Sum_probs=95.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.++....++++|...|.+++|.++..++...-.. .+..+...++..+.+.+... .+..++.+.|+.+......
T Consensus 14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 87 (162)
T 1top_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMVRQMK 87 (162)
T ss_dssp SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SCCEEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHcCC-----CCCcEeHHHHHHHHHHHhc
Confidence 55677788999999999999999999998776543 46677777777766655322 2445999999988664431
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
... .......++.+|+.+|.|++|.++.+|+..++.... .+
T Consensus 88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~ 128 (162)
T 1top_A 88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-EH 128 (162)
T ss_dssp HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTT-CC
T ss_pred ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CC
Confidence 100 011345688999999999999999999999887642 11
Q ss_pred CCCC---CCCCCccccCCCccchhhhHhhh
Q 005908 350 WDEA---PYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 350 ~~~~---~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
.... ........+..|.+++..|+...
T Consensus 129 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 158 (162)
T 1top_A 129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158 (162)
T ss_dssp CCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 1110 11112233556677777666543
No 482
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=96.38 E-value=0.0062 Score=56.90 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 274 (670)
Q Consensus 195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 274 (670)
.+.++++|...|.+++|.++.+|+...- ...+..+...++..+.+.+... .+..++.+.|+.++..
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~d-----~dG~I~~~EF~~~~~~-------- 91 (191)
T 1y1x_A 26 NQELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDKN-----HSGEITFDEFKDLHHF-------- 91 (191)
T ss_dssp TSCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHH--------
Confidence 3467889999999999999999988776 3455667777777776655322 2445999999887542
Q ss_pred chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC--
Q 005908 275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-- 352 (670)
Q Consensus 275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~-- 352 (670)
.+.++..|+.+|.|++|.++.+|+..++...-. +...
T Consensus 92 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~-~~~~~~ 130 (191)
T 1y1x_A 92 ----------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGY-QVSEQT 130 (191)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSC-CCCHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCC-CCCHHH
Confidence 134678999999999999999999998876421 1111
Q ss_pred -CCCCCCccccCCCccchhhhHhhhhh
Q 005908 353 -APYKDAAETTALGNLTLKGFVSKWAL 378 (670)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~~~l~~w~~ 378 (670)
.........+..|.+++..|+..+..
T Consensus 131 ~~~~~~~~D~d~dg~i~~~eF~~~~~~ 157 (191)
T 1y1x_A 131 FQALMRKFDRQRRGSLGFDDYVELSIF 157 (191)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 11112233466778888888777653
No 483
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=96.34 E-value=0.0022 Score=57.30 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
++++....++.+|...|.+++|.++..|+...-. ..+..+...++..+...+... .+..++...|+........
T Consensus 4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 77 (148)
T 2lmt_A 4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMR-TLGQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR 77 (148)
T ss_dssp CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHH-HHTCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHH-hcCCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc
Confidence 4456677899999999999999999999876544 345667777777666554433 2334677777665432110
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC-CCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PES 348 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~-~~~ 348 (670)
. ....+-++..|+.||.|++|.++.+|+..++... ...
T Consensus 78 ~-----------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~ 116 (148)
T 2lmt_A 78 E-----------------------------------------TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKV 116 (148)
T ss_dssp T-----------------------------------------TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCC
T ss_pred c-----------------------------------------cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccc
Confidence 0 0112347889999999999999999998887643 111
Q ss_pred C-CCCCCCCCCccccCCCccchhhhHh
Q 005908 349 P-WDEAPYKDAAETTALGNLTLKGFVS 374 (670)
Q Consensus 349 p-~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (670)
+ ......-.....+..|.|++..|+.
T Consensus 117 ~~~e~~~l~~~~D~d~dG~I~~~EF~~ 143 (148)
T 2lmt_A 117 TDEEIDEMIREADFDGDGMINYEEFVW 143 (148)
T ss_dssp CHHHHHHHHHHHCCSCCSSEEHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 1 0001111123346667777776664
No 484
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=96.31 E-value=0.007 Score=57.26 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=91.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCC--CCCHHHHHHHHHHHhhhc--CCCc-ccCCcChhhHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA--PLQPAEIVGVKRVVQEKQ--HDGV-NDLGLTLSGFLFLH 264 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~--~l~~~~~~~l~~~l~~~~--~~~~-~~~~~~~~~f~~~~ 264 (670)
+.++....++++|...|.+++|.++.+|+...-... +. .+...++..+...+ +.+ .-.. .+..++++.|+.++
T Consensus 30 l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~-~~~~~~~~~~~~~l~~~~-~~lf~~~D~d~dg~i~~~EF~~~~ 107 (208)
T 2hpk_A 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRM-RQLVNATDEQVEKMRDAV-RVFFLHKGVEPVNGLLREDWVEAN 107 (208)
T ss_dssp ------CHHHHHHHHHCTTCSSEECHHHHTHHHHHH-HHHSCCCHHHHHHHHHHH-HHHHHHTTCBTTTBEEGGGHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-HhhcCCCHHHHHHHHHHH-HHHHHHhCCCCCCeEcHHHHHHHH
Confidence 334455678899999999999999999987765543 22 56777777776333 111 0112 24459999999886
Q ss_pred HHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhcc
Q 005908 265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 344 (670)
Q Consensus 265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~ 344 (670)
...-.. .-.+..... | ..-.+.++.+|+.+|.|++|.++.+|+..++..
T Consensus 108 ~~~~~~-------~~~~~~~~~----------~--------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 156 (208)
T 2hpk_A 108 RVFAEA-------ERERERRGE----------P--------------SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKA 156 (208)
T ss_dssp HHHHHH-------HHHHHHTTC----------C--------------CHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHhhh-------hhhhhccCC----------h--------------HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 520000 000000000 0 112344788999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCccccCCCccchhhhHhhhhh
Q 005908 345 APESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (670)
Q Consensus 345 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~~ 378 (670)
....+............+..|.|++..|+..+.-
T Consensus 157 ~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 190 (208)
T 2hpk_A 157 FDVPQEAAYTFFEKADTDKSGKLERTELVHLFRK 190 (208)
T ss_dssp TTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4311111111112233467788888887776653
No 485
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.23 E-value=0.00081 Score=72.81 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=57.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCceEEEEEecCChhhH--hhh------hchH
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--KKI------LSNK 492 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~t~~~~~~~~~vd~~g~~~~~~i~d~~g~~~~--~~~------~~~~ 492 (670)
..+.+|+++|.+|+||||+.++|...-.... .++.............|......+||..|.+.+ ... ....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999986422111 011110000000001111112234777776322 221 1114
Q ss_pred hhcccccEEEEEEECCCcccHHHHHHHHHHHHHh
Q 005908 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARL 526 (670)
Q Consensus 493 ~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~ 526 (670)
.++..+++.++|+|+++. ++.....|...+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 556667888999999997 566667776666654
No 486
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=96.23 E-value=0.0068 Score=58.07 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhc----CCCcccCCcChhhHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ----HDGVNDLGLTLSGFLFLHA 265 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~f~~~~~ 265 (670)
+.++....++++|...|.+++|.++..|+...-...++......++..+...+-... ...-.+..++++.|+.+..
T Consensus 42 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~ 121 (219)
T 3cs1_A 42 KTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRL 121 (219)
T ss_dssp SSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHH
Confidence 345567788999999999999999999998765554555555555555443221100 0001134588888887743
Q ss_pred HHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccC
Q 005908 266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (670)
Q Consensus 266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 345 (670)
.... ....+-++..|+.||.|++|.|+..|+..++...
T Consensus 122 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 159 (219)
T 3cs1_A 122 MLCY------------------------------------------IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKL 159 (219)
T ss_dssp HHHH------------------------------------------HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHH
T ss_pred HHhc------------------------------------------cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence 2210 0113457889999999999999999999888643
Q ss_pred ---CCCCCCCCCCCCCccccCCCccchhhhHhhhh
Q 005908 346 ---PESPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 346 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
+..+............+..|.|++..|+....
T Consensus 160 g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 194 (219)
T 3cs1_A 160 EAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194 (219)
T ss_dssp HHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 11111111122223446777888887776544
No 487
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.22 E-value=0.023 Score=60.22 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATE 35 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~ 35 (670)
..+-.-|+|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 445667999999999999999999863
No 488
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=96.16 E-value=0.0082 Score=55.07 Aligned_cols=139 Identities=20% Similarity=0.314 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (670)
Q Consensus 192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (670)
++....++++|...|.+++|.++..|+...-.. .+..+...++..+.+.+... .+..++.+.|+.++......
T Consensus 7 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~EF~~~~~~~~~~- 79 (179)
T 2f2o_A 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTMMARKMKD- 79 (179)
T ss_dssp CSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhccC-----CCCCCcHHHHHHHHHHHccC-
Confidence 344567889999999999999999998876543 56667777777666554322 24459999998886543210
Q ss_pred CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (670)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~ 351 (670)
......++.+|+.+|.|++|.++.+|+..++..... +..
T Consensus 80 ----------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~-~~~ 118 (179)
T 2f2o_A 80 ----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-KLT 118 (179)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC---CCC
T ss_pred ----------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCC
Confidence 122345778899999999999999999888775421 111
Q ss_pred CC---CCCCCccccCCCccchhhhHhhhhh
Q 005908 352 EA---PYKDAAETTALGNLTLKGFVSKWAL 378 (670)
Q Consensus 352 ~~---~~~~~~~~~~~~~~~~~~~l~~w~~ 378 (670)
.. ........+..|.|++..|+..+.-
T Consensus 119 ~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 148 (179)
T 2f2o_A 119 DEEVDEMIREADIDGDGQVNYEEFVQMMTA 148 (179)
T ss_dssp HHHHHHHHHHHCTTCSSSEEHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 11 0111223456677777777666543
No 489
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.14 E-value=0.017 Score=54.38 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=49.1
Q ss_pred CceeEEEEeCCCCccchhhhHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEeCCCCC
Q 005908 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLR 128 (670)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~ 128 (670)
..+.+.|+|||+.. .......+..+|.+|+++..+... ..+. .+.+.++.. .++.++.+|.|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 45789999999865 445567788899999999875544 4554 366666554 3467889999999954
No 490
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.09 E-value=0.006 Score=64.76 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC
Q 005908 421 RNVFRCLLFGPQNAGKSALLNSFLER 446 (670)
Q Consensus 421 ~~~~kI~ivG~~~vGKSSLin~l~~~ 446 (670)
.+.--|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45678999999999999999999864
No 491
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=96.09 E-value=0.0012 Score=62.28 Aligned_cols=138 Identities=21% Similarity=0.247 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHc
Q 005908 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (670)
Q Consensus 191 ~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 270 (670)
.++....+.++|...|.+++|.++.+|+...-... +..+...++..+.+.+... .+..++.+.|+.+.....
T Consensus 52 ~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d-----~~g~I~~~EF~~~~~~~~-- 123 (197)
T 3pm8_A 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQVLRDIDSN-----ASGQIHYTDFLAATIDKQ-- 123 (197)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-C----CHHHHHHHHC------------CEEHHHHHHTTCCHH--
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHH--
Confidence 45567788999999999999999999988766544 5566666766666554322 234588888877632111
Q ss_pred CCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC-CCC
Q 005908 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP 349 (670)
Q Consensus 271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p 349 (670)
.....+.++.+|+.||.|++|.++.+|+..++.... +.+
T Consensus 124 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~ 163 (197)
T 3pm8_A 124 ----------------------------------------TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENP 163 (197)
T ss_dssp ----------------------------------------HHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCH
T ss_pred ----------------------------------------hhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCC
Confidence 011134688899999999999999999999988751 111
Q ss_pred CCC---CCCCCCccccCCCccchhhhHhhh
Q 005908 350 WDE---APYKDAAETTALGNLTLKGFVSKW 376 (670)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~~~~~~l~~w 376 (670)
... .........+..|.|++..|+..+
T Consensus 164 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l 193 (197)
T 3pm8_A 164 LIDKAIDSLLQEVDLNGDGEIDFHEFMLMM 193 (197)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence 100 001112233566777777776554
No 492
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0046 Score=57.13 Aligned_cols=137 Identities=20% Similarity=0.339 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcC
Q 005908 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (670)
Q Consensus 192 ~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (670)
++....++.+|...|.+++|.++..|+...-. .++..++..++..+...+. ++ .+..+.++.|+.+....
T Consensus 7 ~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~~~d---~d--~~~~i~~~ef~~~~~~~---- 76 (176)
T 2lhi_A 7 EEQIAEFKEAFALFDKDNNGSISSSELATVMR-SLGLSPSEAEVNDLMNEID---VD--GNHQIEFSEFLALMSRQ---- 76 (176)
T ss_dssp TTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHH-HHTCCCCHHHHHHHHTTTC---SS--CSSSBCTTHHHHHHTSS----
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HcCCChhHHHHHHHHHHhC---cC--CCccchHHHHHHHHHHh----
Confidence 34455688999999999999999999876543 4566777777666544322 11 24447777877653200
Q ss_pred CccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCC
Q 005908 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (670)
Q Consensus 272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~ 351 (670)
.. .....+-++..|+.||.|++|.++.+|+..++..... +..
T Consensus 77 ------------------------~~-------------~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~-~~~ 118 (176)
T 2lhi_A 77 ------------------------LK-------------SNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-KLT 118 (176)
T ss_dssp ------------------------CC-------------SSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTC-CCC
T ss_pred ------------------------cc-------------cCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCc-ccc
Confidence 00 1123456889999999999999999999999876421 211
Q ss_pred CC---CCCCCccccCCCccchhhhHhhhh
Q 005908 352 EA---PYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 352 ~~---~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
.. ..-.... +..|.|++..|+..-.
T Consensus 119 ~~ei~~l~~~~d-d~dG~I~~~EF~~~m~ 146 (176)
T 2lhi_A 119 DAEVDDMLREVS-DGSGEINIQQFAALLS 146 (176)
T ss_dssp HHHHHHHHHHHH-TTSSCBCTTHHHHHHT
T ss_pred hHHHHHHHHhhc-CCCCeEeHHHHHHHHH
Confidence 11 0111122 6677788877776543
No 493
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.04 E-value=0.069 Score=56.62 Aligned_cols=151 Identities=16% Similarity=0.059 Sum_probs=80.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHh-------cCCCCCCCCCCcc-----------cceEEEEEEc----------------
Q 005908 422 NVFRCLLFGPQNAGKSALLNSFL-------ERPFSENYAPTTG-----------EQYAVNVVDQ---------------- 467 (670)
Q Consensus 422 ~~~kI~ivG~~~vGKSSLin~l~-------~~~~~~~~~~t~~-----------~~~~~~~vd~---------------- 467 (670)
.+..|+++|.+||||||++..|. |.......-.+.+ ....+.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35678899999999999999987 3322211100100 0000111110
Q ss_pred -CCCceEEEEEecCChhhH-----hhhhchHhhcccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCc-EEEEE
Q 005908 468 -PGGNKKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIA 540 (670)
Q Consensus 468 -~g~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~ 540 (670)
......+.++|++|.... ..+. ....+..++.+++|+|+..+.. .......+.. ..+ .-+|.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~-~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-------~l~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIK-QVHASINPVETLFVVDAMTGQD---AANTAKAFNE-------ALPLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHH-HHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-------HSCCCCEEE
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHH-HHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-------cCCCeEEEE
Confidence 002345778899885222 1111 1223457899999999986533 2222333322 234 34688
Q ss_pred eCCCCCCCcccHHHHHHHHHHhCCCCcEE------------------eecccC-C-hHHHHHHHHHH
Q 005908 541 SKDDLKPYTMAVQDSARVTQELGIEPPIP------------------VSMKSK-D-LNNVFSRIIWA 587 (670)
Q Consensus 541 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------------------vSA~~g-~-v~~l~~~l~~~ 587 (670)
||+|...+. ..+..+....+.+ +.+ +|+..| + +..+++.+.+.
T Consensus 248 nK~D~~~~~---g~~l~i~~~~~~P-i~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~ 310 (433)
T 2xxa_A 248 TKVDGDARG---GAALSIRHITGKP-IKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESK 310 (433)
T ss_dssp ECTTSSSCC---THHHHHHHHHCCC-EEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred ecCCCCccH---HHHHHHHHHHCCC-eEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHh
Confidence 999976432 2334555666654 222 345556 4 77777776554
No 494
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.98 E-value=0.039 Score=55.61 Aligned_cols=63 Identities=14% Similarity=-0.009 Sum_probs=36.8
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCcccHHHHHHHHHHhCCCCcEEee
Q 005908 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (670)
Q Consensus 496 ~~ad~vllv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (670)
...+.++++.|++.+.. +...+..+.+.. +. .++++||.|.... -..+..+...++.+ +.+++
T Consensus 219 ~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-----~~-t~iivTh~d~~a~---gg~~l~i~~~~~~p-i~~ig 281 (304)
T 1rj9_A 219 EEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-----GL-TGVIVTKLDGTAK---GGVLIPIVRTLKVP-IKFVG 281 (304)
T ss_dssp TCCSEEEEEEETTBCTH---HHHHHHHHHHHH-----CC-SEEEEECTTSSCC---CTTHHHHHHHHCCC-EEEEE
T ss_pred CCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-----CC-cEEEEECCccccc---ccHHHHHHHHHCCC-eEEEe
Confidence 45777888999876532 333344443321 23 4667899986542 22344566667765 66665
No 495
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=95.91 E-value=0.0072 Score=55.20 Aligned_cols=130 Identities=18% Similarity=0.306 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCcc
Q 005908 195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 274 (670)
Q Consensus 195 ~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 274 (670)
...++++|...|.+++|.++.+|+...-......++...++..+.+.+... .+..++.+.|+.++..
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~ef~~~~~~-------- 72 (172)
T 2znd_A 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKY-------- 72 (172)
T ss_dssp CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSS-----SSSEECHHHHHHHHHH--------
T ss_pred hhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH--------
Confidence 346788999999999999999999877665433667777777776655321 2345899999887441
Q ss_pred chhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCCC-
Q 005908 275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA- 353 (670)
Q Consensus 275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~- 353 (670)
.+-++.+|+.+|.|++|.++.+|+..++..... +....
T Consensus 73 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~~~~ 111 (172)
T 2znd_A 73 ----------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY-RLSDQF 111 (172)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-CCCHHH
T ss_pred ----------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCC-CCCHHH
Confidence 134778999999999999999999888876421 11110
Q ss_pred --CCCCCccccCCCccchhhhHhhhhh
Q 005908 354 --PYKDAAETTALGNLTLKGFVSKWAL 378 (670)
Q Consensus 354 --~~~~~~~~~~~~~~~~~~~l~~w~~ 378 (670)
........+..|.+++..|+..+..
T Consensus 112 ~~~~~~~~d~~~dg~i~~~eF~~~~~~ 138 (172)
T 2znd_A 112 HDILIRKFDRQGRGQIAFDDFIQGCIV 138 (172)
T ss_dssp HHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 1111233456778888888877654
No 496
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=95.91 E-value=0.038 Score=52.88 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHH
Q 005908 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 266 (670)
Q Consensus 187 ~~~~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~ 266 (670)
...+.++....++++|...|.+++|.++.+|+...-.. .+..+...+++.+.+.+... .+..++.+.|+.+...
T Consensus 42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~~~~~~~~~l~~~~D~d-----~dg~I~~~EF~~~~~~ 115 (220)
T 3sjs_A 42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFP-GGIRLSPQTALRMMRIFDTD-----FNGHISFYEFMAMYKF 115 (220)
T ss_dssp GGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBG-GGBCCCHHHHHHHHHHHCTT-----CSSCBCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH
Confidence 34566778888999999999999999999998776544 36677787777777766322 2455999999888553
Q ss_pred HHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCC
Q 005908 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP 346 (670)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~ 346 (670)
. +-++..|+.+|.|++|.++.+|+..++...-
T Consensus 116 ~------------------------------------------------~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 147 (220)
T 3sjs_A 116 M------------------------------------------------ELAYNLFVMNARARSGTLEPHEILPALQQLG 147 (220)
T ss_dssp H------------------------------------------------HHHHHHHHHHCCSSTTEECHHHHHHHHHHHT
T ss_pred H------------------------------------------------HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhC
Confidence 1 2377899999999999999999998887531
Q ss_pred -CCC-CCCCCCCCCccccCCCccchhhhHhhhhh
Q 005908 347 -ESP-WDEAPYKDAAETTALGNLTLKGFVSKWAL 378 (670)
Q Consensus 347 -~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~ 378 (670)
..+ ........... +..|.|++..|+.....
T Consensus 148 ~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~ 180 (220)
T 3sjs_A 148 FYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAF 180 (220)
T ss_dssp CCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence 111 11111112233 56678888888876654
No 497
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=95.90 E-value=0.0062 Score=57.33 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (670)
+.++....+.++|...|.+++|.++..|+... . .++.... +..++...-.+ .+..++++.|+.+......
T Consensus 23 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~-~lg~~~~------~~~l~~~~D~d--~dg~i~~~EF~~~~~~~~~ 92 (202)
T 2bec_A 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-G-ALAVNPL------GDRIIESFFPD--GSQRVDFPGFVRVLAHFRP 92 (202)
T ss_dssp CCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-H-HHHHSTT------HHHHHHTTSCS--SCCCCCHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-H-hcCCCcc------HHHHHHHhCCC--CCCcCcHHHHHHHHHHhcc
Confidence 45667778999999999999999999999877 2 2222222 33344333222 2445999999887542210
Q ss_pred cCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCC
Q 005908 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (670)
Q Consensus 270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 349 (670)
.. . ...| ... ...........+.++.+|+.||.|++|.|+.+|+..++....+.+
T Consensus 93 ~~-~--------------------~~~~-~~~---~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ 147 (202)
T 2bec_A 93 VE-D--------------------EDTE-TQD---PKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ 147 (202)
T ss_dssp CC-H--------------------HHHC---------CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSC
T ss_pred cc-h--------------------hccc-ccc---cccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCC
Confidence 00 0 0001 000 000112344567799999999999999999999999987653333
Q ss_pred CCCCC---CCCC----ccccCCCccchhhhHhhhh
Q 005908 350 WDEAP---YKDA----AETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 350 ~~~~~---~~~~----~~~~~~~~~~~~~~l~~w~ 377 (670)
..... .... ...+..|.|++..|+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 182 (202)
T 2bec_A 148 VTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182 (202)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 22111 1111 3345677788777776554
No 498
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.88 E-value=0.004 Score=58.48 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHcC
Q 005908 9 SRTGVRVVVVGDRGTGKSSLIAAAATE 35 (670)
Q Consensus 9 ~~~~~kI~ivG~~~vGKSSLi~~l~~~ 35 (670)
..+.--|+|+|++|||||||++.|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344557999999999999999999864
No 499
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=95.88 E-value=0.009 Score=55.62 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=86.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCChHHHHHH----hhhhcCCCCCHHHHH--HHHHHHhhhcCCCcccCCcChhhHHHH
Q 005908 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEF----QVKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL 263 (670)
Q Consensus 190 ~~~~~~~~l~ri~~~~d~~~~~~l~~~el~~~----q~~~~~~~l~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~f~~~ 263 (670)
..++....++++|...|.+++|.++.+|+... -...++......++. .+..++...-.+ .+..++.+.|+.+
T Consensus 14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d--~~g~i~~~EF~~~ 91 (195)
T 1qv0_A 14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME--YGKEIAFPQFLDG 91 (195)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCC--TTCCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCC--CCceEcHHHHHHH
Confidence 35677788999999999999999999999732 123345444443211 233344333221 2445999999998
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhc
Q 005908 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (670)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~ 343 (670)
+......... .|. -. . ...-..++...|+.||.|++|.|+.+|+..++.
T Consensus 92 ~~~~~~~~~~--~~~------~~-----~------------------~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~ 140 (195)
T 1qv0_A 92 WKQLATSELK--KWA------RN-----E------------------PTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK 140 (195)
T ss_dssp HHHHHHHHHH--HHH------TT-----C------------------CCHHHHHHHHHHHHTC----CEECHHHHHHHHH
T ss_pred HHHHHhhhhh--ccc------cc-----H------------------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 7654432100 000 00 0 001123455899999999999999999988886
Q ss_pred cCCCCCCCC---CCCCCCccccCCCccchhhhHhhhh
Q 005908 344 TAPESPWDE---APYKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 344 ~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
..- .+... .........+..|.|++..|+..+.
T Consensus 141 ~~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 176 (195)
T 1qv0_A 141 ISG-ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL 176 (195)
T ss_dssp HHS-SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred HhC-CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 531 11111 0111122345677788777766554
No 500
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=95.86 E-value=0.0077 Score=52.91 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHhhhcCCCcccCCcChhhHHHHHHHHHHcCCccchh
Q 005908 198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW 277 (670)
Q Consensus 198 l~ri~~~~d~~~~~~l~~~el~~~q~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w 277 (670)
++++|...|.+++|.++.+|+...-.. .+..+...++..+.+. -.+..++.+.|+.+......
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~-------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRS-LGKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK-------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHH-TTCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHH-hCCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence 889999999999999999998876554 3667777777766654 12445899998887431100
Q ss_pred HHHhhccCCCCcccCCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCCHhhHhhhhccCCCCCCCC---CC
Q 005908 278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE---AP 354 (670)
Q Consensus 278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~---~~ 354 (670)
-.......++.+|+.+|.|++|.++.+|+..++.... .+... ..
T Consensus 70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g-~~~~~~~~~~ 116 (145)
T 2bl0_B 70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLG-DALTSSEVEE 116 (145)
T ss_dssp --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSS-SCCCHHHHHH
T ss_pred --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcC-CCCCHHHHHH
Confidence 0122345688999999999999999999998887642 12111 11
Q ss_pred CCCCccccCCCccchhhhHhhhh
Q 005908 355 YKDAAETTALGNLTLKGFVSKWA 377 (670)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~w~ 377 (670)
.......+..|.+++..|+..+.
T Consensus 117 ~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 117 LMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHcCCCCCCcEeHHHHHHHHH
Confidence 11223446677788877776654
Done!