BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005910
(670 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 346 PAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIY 397
PAE E Y LA + F I D NMF HL++ V + G IY
Sbjct: 367 PAEVAEQYSEKLAYMPHTF------FIGDHANMFPHLKKKAVIDFKSNGHIY 412
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 406 EFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD---------- 455
E +L + L LV + D LW + + +PYR P I V E D
Sbjct: 936 ENSLFKSLSRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994
Query: 456 ---NDLPG-LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSP 510
DLP L +LLE L VF R+ ++ D V+ Y+ RL+ N +P
Sbjct: 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAP 1053
Query: 511 LXXXXXIVRIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
I EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>pdb|1CFR|A Chain A, Crystal Structure Of Citrobacter Freundii Restriction
Endonuclease Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 600 QSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQ---QKEIG-LAKASDIIDA 655
Q+ T I ++ A +IG ++GLK + T +I+ V+ Q + + K + ++D
Sbjct: 216 QTRTWTINPTGIRYYAAATSIGNADVIGLKTVATHSITDVKSLPQSAVDEIFKINSVLDV 275
Query: 656 GKILRHVLAS 665
L H+L+S
Sbjct: 276 DSCLSHILSS 285
>pdb|3E1Q|A Chain A, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|B Chain B, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|C Chain C, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|D Chain D, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|E Chain E, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|F Chain F, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|G Chain G, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|H Chain H, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|I Chain I, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|J Chain J, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|K Chain K, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron.
pdb|3E1Q|L Chain L, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
With Iron
Length = 158
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 151 EYNQGLAD-DHADTILTEVPW-DKVPGALLVLQEAGETEVVLRIGE---SLLRERLPKSF 205
EY++ + + HAD + + + + +P LQ+ G+ L IGE +LR L
Sbjct: 44 EYHESIDEMKHADRYIERILFLEGLPN----LQDLGK----LNIGEDVEEMLRSDLALEL 95
Query: 206 KQDVVLAMALAYVD-----ISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQA 260
L A+ Y D +SRD M D G + LE L L+Q+ G + LQA
Sbjct: 96 DGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDFLETELDLIQKMGLQNY---LQA 152
Query: 261 QIDE 264
QI E
Sbjct: 153 QIRE 156
>pdb|1BCF|A Chain A, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|B Chain B, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BFR|A Chain A, Iron Storage And Electron Transport
pdb|1BFR|B Chain B, Iron Storage And Electron Transport
pdb|1BFR|C Chain C, Iron Storage And Electron Transport
pdb|1BFR|D Chain D, Iron Storage And Electron Transport
pdb|1BFR|E Chain E, Iron Storage And Electron Transport
pdb|1BFR|F Chain F, Iron Storage And Electron Transport
pdb|1BFR|G Chain G, Iron Storage And Electron Transport
pdb|1BFR|H Chain H, Iron Storage And Electron Transport
pdb|1BFR|I Chain I, Iron Storage And Electron Transport
pdb|1BFR|J Chain J, Iron Storage And Electron Transport
pdb|1BFR|K Chain K, Iron Storage And Electron Transport
pdb|1BFR|L Chain L, Iron Storage And Electron Transport
pdb|1BFR|M Chain M, Iron Storage And Electron Transport
pdb|1BFR|N Chain N, Iron Storage And Electron Transport
pdb|1BFR|O Chain O, Iron Storage And Electron Transport
pdb|1BFR|P Chain P, Iron Storage And Electron Transport
pdb|1BFR|Q Chain Q, Iron Storage And Electron Transport
pdb|1BFR|R Chain R, Iron Storage And Electron Transport
pdb|1BFR|S Chain S, Iron Storage And Electron Transport
pdb|1BFR|T Chain T, Iron Storage And Electron Transport
pdb|1BFR|U Chain U, Iron Storage And Electron Transport
pdb|1BFR|V Chain V, Iron Storage And Electron Transport
pdb|1BFR|W Chain W, Iron Storage And Electron Transport
pdb|1BFR|X Chain X, Iron Storage And Electron Transport
pdb|2HTN|A Chain A, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|B Chain B, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|C Chain C, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|D Chain D, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|E Chain E, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|F Chain F, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|G Chain G, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|H Chain H, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|1BCF|C Chain C, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|D Chain D, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|E Chain E, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|F Chain F, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|G Chain G, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|H Chain H, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|I Chain I, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|J Chain J, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|K Chain K, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|L Chain L, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|2VXI|A Chain A, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|B Chain B, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|C Chain C, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|D Chain D, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|E Chain E, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|F Chain F, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|G Chain G, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|H Chain H, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|I Chain I, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|J Chain J, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|K Chain K, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|L Chain L, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|3E1J|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1L|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1M|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1N|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1O|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1P|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|2Y3Q|A Chain A, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|B Chain B, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|C Chain C, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|D Chain D, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|E Chain E, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|F Chain F, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|G Chain G, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|H Chain H, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|I Chain I, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|J Chain J, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|K Chain K, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|L Chain L, 1.55a Structure Of Apo Bacterioferritin From E. Coli
Length = 158
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 151 EYNQGLAD-DHADTILTEVPW-DKVPGALLVLQEAGETEVVLRIGE---SLLRERLPKSF 205
EY++ + + HAD + + + + +P LQ+ G+ L IGE +LR L
Sbjct: 44 EYHESIDEMKHADRYIERILFLEGLPN----LQDLGK----LNIGEDVEEMLRSDLALEL 95
Query: 206 KQDVVLAMALAYVD-----ISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQA 260
L A+ Y D +SRD M D G + LE L L+Q+ G L LQA
Sbjct: 96 DGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMG---LQNYLQA 152
Query: 261 QIDE 264
QI E
Sbjct: 153 QIRE 156
>pdb|3GHQ|A Chain A, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|B Chain B, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|C Chain C, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|D Chain D, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|E Chain E, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|F Chain F, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|G Chain G, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|H Chain H, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|I Chain I, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|J Chain J, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|K Chain K, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|L Chain L, Crystal Structure Of E. Coli W35f Bfr Mutant
Length = 158
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 151 EYNQGLAD-DHADTILTEVPW-DKVPGALLVLQEAGETEVVLRIGE---SLLRERLPKSF 205
EY++ + + HAD + + + + +P LQ+ G+ L IGE +LR L
Sbjct: 44 EYHESIDEMKHADRYIERILFLEGLPN----LQDLGK----LNIGEDVEEMLRSDLALEL 95
Query: 206 KQDVVLAMALAYVD-----ISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQA 260
L A+ Y D +SRD M D G + LE L L+Q+ G + LQA
Sbjct: 96 DGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNY---LQA 152
Query: 261 QIDE 264
QI E
Sbjct: 153 QIRE 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,016,371
Number of Sequences: 62578
Number of extensions: 697317
Number of successful extensions: 1584
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 7
length of query: 670
length of database: 14,973,337
effective HSP length: 105
effective length of query: 565
effective length of database: 8,402,647
effective search space: 4747495555
effective search space used: 4747495555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)