BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005912
(670 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +MEAA A FN ++ EVA F ME ++P
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME--TKGIRP 291
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I +Y R D + LL M+E K++ PNV T+ L++ F K + E
Sbjct: 292 NVVTYNSLINCLC---NYGRWSDASRLLSNMLE--KKINPNVVTFNALIDAFFKEGKLVE 346
Query: 126 AIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM-AKDNQPV 183
A + H +Q + +N L + C R+ E + + M +KD P
Sbjct: 347 AEKLHEEMIQRSIDPDTITYN---------LLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397
Query: 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230
+ Y TL++ + + + E G E + R +S+ GL G
Sbjct: 398 I-------QTYNTLINGFCKC--KRVEDGVE---LFREMSQRGLVGN 432
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYM 63
CK GD AL + +MEAA A FN ++ + C V A F+ ME +
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGI 291
Query: 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 123
+P+ TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K
Sbjct: 292 RPNVVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKF 346
Query: 124 TEA 126
EA
Sbjct: 347 VEA 349
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 32/141 (22%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
PD TYN ++ + +DR+ ++ MV K P+V TY L++ F K V
Sbjct: 363 PDIFTYNSLVNGFCM---HDRLDKAKQMFEFMVS--KDCFPDVVTYNTLIKGFCKSKRVE 417
Query: 125 EAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP-----LSLYL 157
+ FR + + Y + L ++G+ G P S+ L
Sbjct: 418 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 477
Query: 158 RALCREGRIIELLEALEAMAK 178
LC G++ + LE + M K
Sbjct: 478 DGLCNNGKLEKALEVFDYMQK 498
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G + +M AG T F +N ++ C G E A FE M++ + PD
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPD 296
Query: 67 TETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
T TYN +I + + D V E+ M E P+V TY L+ CF K+ +
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE------PDVITYNALINCFCKFGKLPI 350
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166
+ +R ++ G + N ++ S + A C+EG +
Sbjct: 351 GLEFYREMK----GNGLKPNVVSY----STLVDAFCKEGMM 383
Score = 39.3 bits (90), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI CK GD A + EM+ G + T +N ++ G + FE M+ +
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK--D 325
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+PD TYN +I + + + ++ E M L+PNV +Y+ LV+ F K
Sbjct: 326 MCCEPDVITYNALINCFCK---FGKLPIGLEFYREM--KGNGLKPNVVSYSTLVDAFCKE 380
Query: 121 CAVTEAIRHF 130
+ +AI+ +
Sbjct: 381 GMMQQAIKFY 390
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
KAG AL + EM G +N LLS G E A M +K D
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM--ASVGIKKD 478
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
TYN ++ Y + YD V+ V M +H + PN+ TY+ L++ ++K EA
Sbjct: 479 VVTYNALLGGYGKQGKYDEVKKV---FTEMKREH--VLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 127 IRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
+ FR ++ G + VL+ S + ALC+ G + + ++ M K+
Sbjct: 534 MEIFREFKS--AGLRADVVLY---------SALIDALCKNGLVGSAVSLIDEMTKE 578
Score = 40.0 bits (92), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 20 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79
EM+ G FN LL+ + G+ E A F+ M ++ D +YN ++ A +
Sbjct: 329 EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT--NRRIEQDVFSYNTLLDAICK 386
Query: 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139
D E+L M KR+ PNV +Y+ +++ F K EA+ F ++ Y G
Sbjct: 387 GGQMDLA---FEILAQM--PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR-YLG- 439
Query: 140 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177
+ + ++ LS+Y + GR E L+ L MA
Sbjct: 440 --IALDRVSYNTLLSIYTKV----GRSEEALDILREMA 471
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 15 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 74
L + ++E G T FN +++ + G + A FE M+ E KP T+N +I
Sbjct: 374 LSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLI 431
Query: 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 134
+ Y + ++++ + LL MM+ D + LQPN +T +LV+ + + EA +Q
Sbjct: 432 KGYGK---IGKLEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487
Query: 135 NY 136
+Y
Sbjct: 488 SY 489
Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 40 QATCG---IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 96
QA C I E ++ YG +KPD T+N + +AY R S +D+ ++ M
Sbjct: 468 QAWCNQRKIEEAWNIVYKMQSYG---VKPDVVTFNTLAKAYARIGSTCTAEDM--IIPRM 522
Query: 97 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 134
+ H +++PNV+T +V + + + EA+R F ++
Sbjct: 523 L--HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK 558
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYM 63
CK GD A + +MEAA A FN ++ + C V A F+ ME +
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGI 216
Query: 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 123
+P+ TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K
Sbjct: 217 RPNVVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKF 271
Query: 124 TEA 126
EA
Sbjct: 272 VEA 274
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 69/235 (29%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--------------------- 44
CK +AL + EME G ++ L+SC + G
Sbjct: 196 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 255
Query: 45 ----------IPEVAFATFENMEYGEDYMK----PDTETYNCVIQAYTRAESYDRVQDVA 90
+ E F E + +D +K PD TYN +I + +DR+
Sbjct: 256 VTFNALIDAFVKEGKFVEAEKLH--DDMIKRSIDPDIFTYNSLINGFCM---HDRLDKAK 310
Query: 91 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---------YEGGTK 141
++ MV K P++ TY L++ F K V + FR + + Y +
Sbjct: 311 QMFEFMVS--KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368
Query: 142 VLHNEGNF-------------GDP-----LSLYLRALCREGRIIELLEALEAMAK 178
L ++G+ G P S+ L LC G++ + LE + M K
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI CKAG + ++ + G +N ++S + + + A+A + M+ E
Sbjct: 436 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--E 493
Query: 61 DYMKPDTETYNCVIQAYTR 79
D PD+ TYN +I+A+ R
Sbjct: 494 DGPLPDSGTYNTLIRAHLR 512
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 17/161 (10%)
Query: 6 CKAGD-HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 64
CK G H A ++ EM+AAG +N LL P+ A M +
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL--NGFS 346
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
P TYN +I AY R D + EL M E K +P+V TY L+ F + V
Sbjct: 347 PSIVTYNSLISAYARDGMLD---EAMELKNQMAE--KGTKPDVFTYTTLLSGFERAGKVE 401
Query: 125 EAIRHFRALQN---------YEGGTKVLHNEGNFGDPLSLY 156
A+ F ++N + K+ N G F + + ++
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 20 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79
EM+ AG + FN L+S + CG E A + M + + PD TYN V+ A R
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML--DAGVTPDLSTYNTVLAALAR 536
Query: 80 AESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECF 117
+++ + V AE+ ED R +PN TY L+ +
Sbjct: 537 GGMWEQSEKVLAEM-----ED-GRCKPNELTYCSLLHAY 569
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I+ + G A+E+ +M G F + LLS G E A + FE M
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 117
KP+ T+N I+ Y + + + + + + L P++ T+ L+ F
Sbjct: 415 --CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC-----GLSPDIVTWNTLLAVF 464
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 73
A E E+++ G T +N LL G+ A + + ME E+ D+ TYN +
Sbjct: 300 AKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME--ENSCPADSVTYNEL 357
Query: 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 133
+ AY RA V E++ K + PN TY +++ + K EA++ F ++
Sbjct: 358 VAAYVRAGFSKEAAGVIEMM-----TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412
Query: 134 QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187
+ E G + N + LSL L ++ R E+++ L M K N P RA
Sbjct: 413 K--EAG--CVPNTCTYNAVLSL----LGKKSRSNEMIKMLCDM-KSNGCSPNRA 457
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
KAG ++ AL + EME A + +N L++ G + A E M + + P+
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT--KKGVMPN 385
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
TY VI AY +A D + +L M E PN TY ++ K E
Sbjct: 386 AITYTTVIDAYGKAGKED---EALKLFYSMKEAG--CVPNTCTYNAVLSLLGKKSRSNEM 440
Query: 127 IR 128
I+
Sbjct: 441 IK 442
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 37 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 96
C+A G E AF F+ Y KPD +N ++ +TR YD+ + + E +
Sbjct: 607 FKCRALAG-SERAFTLFKKHGY-----KPDMVIFNSMLSIFTRNNMYDQAEGILE---SI 657
Query: 97 VEDHKRLQPNVKTYALLVECFTK 119
ED L P++ TY L++ + +
Sbjct: 658 REDG--LSPDLVTYNSLMDMYVR 678
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+IA + G+ A+ I E+E + +N L++C G + A F+ M+ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ--E 540
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ PD TY+ +++ + + E RV+ L M+ K QPN+ TY +L++C K
Sbjct: 541 KGLNPDVVTYSTLMECFGKTE---RVEMAYSLFEEMLV--KGCQPNIVTYNILLDCLEKN 595
Query: 121 CAVTEAI 127
EA+
Sbjct: 596 GRTAEAV 602
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
M+ C AG A+E+ ++ G + T +N + S FE M+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK--K 470
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
D PD TYN +I ++ R D ++ E L + +P++ +Y L+ C K
Sbjct: 471 DGPSPDIFTYNILIASFGRVGEVDEAINIFEEL-----ERSDCKPDIISYNSLINCLGKN 525
Query: 121 CAVTEAIRHFRALQ 134
V EA F+ +Q
Sbjct: 526 GDVDEAHVRFKEMQ 539
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
++ C G AL I EME G + T +N L+ E F M +
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR--D 407
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+KP TYN ++ AY R R+Q D+ E L +ED L+PNVK+Y L+ + +
Sbjct: 408 KGLKPSAATYNILMDAYAR-----RMQPDIVETLLREMEDLG-LEPNVKSYTCLISAYGR 461
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 21 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80
M+ G ++ + L+ + G E A+A+FE M ++ +KP ETY V+ A+ R+
Sbjct: 476 MKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM--CKEGIKPSVETYTSVLDAFRRS 533
Query: 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
++ ++ +L+ ++++ TY L++ F K EA
Sbjct: 534 GDTGKLMEIWKLML-----REKIKGTRITYNTLLDGFAKQGLYIEA 574
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67
+GD AL + EM + G +N ++SC G+ + AF +M E P
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE--FHPSV 508
Query: 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 115
TYN V+ + +A R++D +L MV + R PN TY +L+E
Sbjct: 509 VTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLIE 551
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 73
AL++ EM + G F +N ++ G+ + AF N+E +PD +YN +
Sbjct: 247 ALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG--CEPDVISYNIL 304
Query: 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 133
++A ++ + +L+ M + + PNV TY++L+ + + EA+ + +
Sbjct: 305 LRALLNQGKWEEGE---KLMTKMFSE--KCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 134 QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
+ K L + DPL + A CREGR+ +E LE M D
Sbjct: 360 KE-----KGLTPDAYSYDPL---IAAFCREGRLDVAIEFLETMISD 397
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68
G+ N + M A G +N L+ A G+ A + +++ ++ + PD
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK--QNGIIPDVV 391
Query: 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 128
+Y C++ +Y R+ + ++V ++ +R +PNV TY L++ + + EA+
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEV-----FLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVE 446
Query: 129 HFRALQ 134
FR ++
Sbjct: 447 IFRQME 452
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I +AG A+ + +M A + +N+L++ + G A + M +
Sbjct: 184 LINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--D 241
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ + PD T+N V+ AY Y + EL+ +++P+ T+ +++ C +K
Sbjct: 242 NGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKL 296
Query: 121 CAVTEAIRHFRALQ 134
++A+ F +++
Sbjct: 297 GQSSQALDLFNSMR 310
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI K G S A+++ EM+ G + +N L+S G+ A + ME E
Sbjct: 485 MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME--E 542
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ + D ++N ++ + R R ++ E + H ++P+ TY L+ CF
Sbjct: 543 NGCRADINSHNIILNGFARTGVPRRAIEMFETI-----KHSGIKPDGVTYNTLLGCFAHA 597
Query: 121 CAVTEAIRHFRALQN 135
EA R R +++
Sbjct: 598 GMFEEAARMMREMKD 612
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 16/182 (8%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G AL++ EM+ AG T + + L+ G + A+ +++M D + PD
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML--RDGLTPD 337
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTE 125
N ++ + + + +V +GM R P V +Y +++ F V+E
Sbjct: 338 VVFLNNLMNILGKVGRVEELTNVFSEMGMW-----RCTPTVVSYNTVIKALFESKAHVSE 392
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 185
F ++ V +E + S+ + C+ R+ + L LE M + P P
Sbjct: 393 VSSWFDKMK----ADSVSPSEFTY----SILIDGYCKTNRVEKALLLLEEMDEKGFPPCP 444
Query: 186 RA 187
A
Sbjct: 445 AA 446
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G + A+E+ +ME ++ ++ G + AF F ME K
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG--FKA 296
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D TYN +I + A +D D A+LL M++ +++ PNV T+++L++ F K + E
Sbjct: 297 DIITYNTLIGGFCNAGRWD---DGAKLLRDMIK--RKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 126 AIRHFR-ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176
A + + +Q + +N + C+E R+ E ++ ++ M
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNS---------LIDGFCKENRLEEAIQMVDLM 394
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 19/176 (10%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYGEDYMKP 65
K + L + +ME+ G + + + +++C C AF+T + M+ G + P
Sbjct: 100 KTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYE---P 156
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVT 124
DT +N ++ RV + EL+ MVE HK P + T LV V+
Sbjct: 157 DTVIFNTLLNGLCLEC---RVSEALELVDRMVEMGHK---PTLITLNTLVNGLCLNGKVS 210
Query: 125 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
+A+ L + T NE +G P+ L +C+ G+ +E L M + N
Sbjct: 211 DAV----VLIDRMVETGFQPNEVTYG-PV---LNVMCKSGQTALAMELLRKMEERN 258
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I+ C+ +A+ + +++ G +N L+ E + +ME +
Sbjct: 517 LISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME--K 574
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ KPD+ TYN +I + + + ++ V+ + E M ED L P V TY +++ +
Sbjct: 575 EGKKPDSITYNTLISFFGKHKDFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSV 629
Query: 121 CAVTEAIRHFR--ALQNYEGGTKVLHN--------EGNFGDPLSL 155
+ EA++ F+ L + V++N GNFG LSL
Sbjct: 630 GELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL 674
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAA----GRM--ATTFHFNHLLSCQATCGIPEVAFATFE 54
+I CK+ ALE+ +M G + A + HFN L+ G + A
Sbjct: 335 LINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 55 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114
M+ E+ P+ TYNC+I Y RA +++ E++ M ED ++PNV T +V
Sbjct: 395 RMKL-EERCAPNAVTYNCLIDGYCRA---GKLETAKEVVSRMKEDE--IKPNVVTVNTIV 448
Query: 115 ECFTKYCAVTEAIRHF 130
++ + A+ F
Sbjct: 449 GGMCRHHGLNMAVVFF 464
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 41 ATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98
A C + E+ A F++M + P+T YN +I A+++ ++ + + E + M
Sbjct: 625 AYCSVGELDEALKLFKDMGL-HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM--- 680
Query: 99 DHKRLQPNVKTYALLVECFT 118
K ++PNV+TY L +C
Sbjct: 681 --KMVRPNVETYNALFKCLN 698
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I+ C+ +A+ + +++ G +N L+ E + +ME +
Sbjct: 517 LISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--K 574
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ KPD+ TYN +I + + + ++ V+ + E M ED L P V TY +++ +
Sbjct: 575 EGKKPDSITYNTLISFFGKHKDFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSV 629
Query: 121 CAVTEAIRHFR--ALQNYEGGTKVLHN--------EGNFGDPLSL 155
+ EA++ F+ L + V++N GNFG LSL
Sbjct: 630 GELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL 674
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAA----GRM--ATTFHFNHLLSCQATCGIPEVAFATFE 54
+I CK+ ALE+ +M G + A + HFN L+ G + A
Sbjct: 335 LINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 55 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114
M+ E+ P+ TYNC+I Y RA +++ E++ M ED ++PNV T +V
Sbjct: 395 RMKL-EERCVPNAVTYNCLIDGYCRA---GKLETAKEVVSRMKEDE--IKPNVVTVNTIV 448
Query: 115 ECFTKYCAVTEAIRHF 130
++ + A+ F
Sbjct: 449 GGMCRHHGLNMAVVFF 464
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 41 ATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98
A C + E+ A F++M + P+T YN +I A+++ ++ + + E + M
Sbjct: 625 AYCSVGELDEALKLFKDMGL-HSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM--- 680
Query: 99 DHKRLQPNVKTYALLVECFT 118
K ++PNV+TY L +C
Sbjct: 681 --KMVRPNVETYNALFKCLN 698
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK G A+++ +ME AG FN ++ CG + AF E M E M+P
Sbjct: 284 CKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV--ERGMEP 341
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
TY+ +++ TRA+ R+ D +L M + K PNV Y L++ F + ++ +
Sbjct: 342 TLITYSILVKGLTRAK---RIGDAYFVLKEMTK--KGFPPNVIVYNNLIDSFIEAGSLNK 396
Query: 126 AI 127
AI
Sbjct: 397 AI 398
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYM 63
C+AG A I E+ G + +N L+S CG ++ AF + M + +
Sbjct: 529 CEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMV--KRGL 584
Query: 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYC 121
KPD TY+ +I + ++V++ + +D KR + P+V TY+++++ K
Sbjct: 585 KPDNYTYSILICGLF---NMNKVEEAIQFW----DDCKRNGMLPDVYTYSVMIDGCCKAE 637
Query: 122 AVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
E F + +N + T V++N +RA CR GR+ LE E M
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNT-VVYNH---------LIRAYCRSGRLSMALELREDM--K 685
Query: 180 NQPVPPRAMILSRKYRTLVSSW-IEPLQEEAELGYE 214
++ + P S Y +L+ I EEA+L +E
Sbjct: 686 HKGISPN----SATYTSLIKGMSIISRVEEAKLLFE 717
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C++G S ALE+ +M+ G + + L+ + E A FE M
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM-- 721
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-KRLQPNVKTYALLVECFTK 119
+ ++P+ Y +I Y + +V+ ++ E H K + PN TY +++ + +
Sbjct: 722 EGLEPNVFHYTALIDGYGKLGQMVKVE------CLLREMHSKNVHPNKITYTVMIGGYAR 775
Query: 120 YCAVTEAIR 128
VTEA R
Sbjct: 776 DGNVTEASR 784
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYG 59
I CK G S+A + +ME G + +N L+ GI F M E
Sbjct: 565 FIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMK 621
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
E + P+ TYN IQ E +V+D LL M++ K + PNV ++ L+E F K
Sbjct: 622 EKGISPNICTYNTAIQYLCEGE---KVEDATNLLDEMMQ--KNIAPNVFSFKYLIEAFCK 676
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176
A F + G + L+ SL L G++++ E LEA+
Sbjct: 677 VPDFDMAQEVFETAVSICGQKEGLY---------SLMFNELLAAGQLLKATELLEAV 724
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CKAG LE+ ME+ G + +N ++S G + + E M E+ + P
Sbjct: 193 CKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR--EEGLVP 250
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLG-MMVEDHKRL-QPNVKTYALLVECFTKYCAV 123
D T+N I A + +V D + + M ++++ L +PN TY L+++ F K +
Sbjct: 251 DIVTFNSRISALCKE---GKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLL 307
Query: 124 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176
+A F +++ + + +++L+ L R G+ IE L+ M
Sbjct: 308 EDAKTLFESIRENDDLASL--------QSYNIWLQGLVRHGKFIEAETVLKQM 352
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 59
++ CK GD + A + EM+ +G + ++ L+ C + A FE+M
Sbjct: 202 LVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDM-IS 260
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
++ + PD T+N +I + RA +R + + + + PNV Y+ L+ F K
Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFM-----KKNGCNPNVYNYSALMNGFCK 315
Query: 120 YCAVTEAIRHF 130
+ EA + F
Sbjct: 316 VGKIQEAKQTF 326
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD +A E+ +EM G F +N +++ G E A E +
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG--LNA 524
Query: 66 DTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECFT 118
DT TY ++ AY ++ D+ Q++ E+LG K LQP + T+ +L+ F
Sbjct: 525 DTVTYTTLMDAYCKSGEMDKAQEILKEMLG------KGLQPTIVTFNVLMNGFC 572
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G+ A+++ E EAAG A T + L+ G + A + M G+ ++P
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM-LGKG-LQP 559
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 121
T+N ++ + + ++D +LL M+ K + PN T+ LV+ +YC
Sbjct: 560 TIVTFNVLMNGFCL---HGMLEDGEKLLNWMLA--KGIAPNATTFNSLVK---QYC 607
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I+ C+ GD A ++ +EM G + F L++ G + AF +M +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI--Q 449
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
P+ TY +I + D ELL M + LQPN+ TY +V K
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSAN---ELLHEMWKIG--LQPNIFTYNSIVNGLCKS 504
Query: 121 CAVTEAIR 128
+ EA++
Sbjct: 505 GNIEEAVK 512
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
PD +Y+ V+ Y R D+V + E++ K L+PN Y ++ + C +
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVM-----KRKGLKPNSYIYGSIIGLLCRICKLA 333
Query: 125 EA 126
EA
Sbjct: 334 EA 335
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C++GD S AL++ +ME A F ++ ++ G + A + F+ ME +K
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME--TKGIKS 261
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
TYN +++ +A ++ D A LL MV + + PNV T+ +L++ F K
Sbjct: 262 SVVTYNSLVRGLCKAGKWN---DGALLLKDMVS--REIVPNVITFNVLLDVFVK 310
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 35/254 (13%)
Query: 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 71
S+A E+ +M G FN L++ G E A E M E + PD TYN
Sbjct: 186 SSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERM-VSEFKVNPDNVTYN 244
Query: 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 131
+++A ++ R+ D+ ELL M ++ L PN TY LV + K ++ EA +
Sbjct: 245 TILKAMSKK---GRLSDLKELLLDMKKN--GLVPNRVTYNNLVYGYCKLGSLKEAFQIVE 299
Query: 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS 191
++ T VL + + ++ + LC G + E LE ++AM + + P +
Sbjct: 300 LMKQ----TNVLPDLCTY----NILINGLCNAGSMREGLELMDAM--KSLKLQPDVVT-- 347
Query: 192 RKYRTLVSSWIE--------PLQEEAEL-GYEIDYIARYISEGGLTGERKR-WVPRRGKT 241
Y TL+ E L E+ E G + + + IS L E KR V R+ K
Sbjct: 348 --YNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKE 405
Query: 242 PLD-----PDAVGF 250
+D PD V +
Sbjct: 406 LVDMHGFSPDIVTY 419
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 29/220 (13%)
Query: 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 73
ALE+ EM+ T FN L+ G E+A F+ E E + PD T+N +
Sbjct: 505 ALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFD--ELAESGLLPDDSTFNSI 562
Query: 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 133
I Y + RV+ E ++ +P+ T +L+ K +A+ F L
Sbjct: 563 ILGYCKE---GRVEKAFEFYNESIKH--SFKPDNYTCNILLNGLCKEGMTEKALNFFNTL 617
Query: 134 QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 193
V +N + A C++ ++ E + L M + + + P
Sbjct: 618 IEEREVDTVTYNT---------MISAFCKDKKLKEAYDLLSEM--EEKGLEPD------- 659
Query: 194 YRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233
R +S+I L E+ +L E D + + S G G KR
Sbjct: 660 -RFTYNSFISLLMEDGKLS-ETDELLKKFS--GKFGSMKR 695
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 73
A E+ EM G + + L+S + G + AF E M+ + +PD TY+ +
Sbjct: 169 AHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHN-CQPDVHTYSIL 227
Query: 74 IQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTK 119
I+++ + ++D+VQD ++ D +R ++PN TY L++ + K
Sbjct: 228 IKSFLQVFAFDKVQD-------LLSDMRRQGIRPNTITYNTLIDAYGK 268
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95
L+ C PE A F+ M + + E Y ++ AY+R+ +D LL
Sbjct: 156 LIVMLGKCKQPEKAHELFQEMI--NEGCVVNHEVYTALVSAYSRSGRFD---AAFTLLER 210
Query: 96 MVEDHKRLQPNVKTYALLVECFTKYCA 122
M H QP+V TY++L++ F + A
Sbjct: 211 MKSSHN-CQPDVHTYSILIKSFLQVFA 236
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C++G +E+ +ME G AT +N L++ G+ A +NM G+ ++P
Sbjct: 249 CRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALK-LKNM-MGKSGLQP 306
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+ T+N +I + RA ++Q+ +++ G M + + PN TY L+ +++
Sbjct: 307 NVVTFNTLIHGFCRAM---KLQEASKVFGEMKAVN--VAPNTVTYNTLINGYSQ 355
Score = 36.2 bits (82), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+A A ++ EM+A T +N L++ + G E+AF +E+M
Sbjct: 314 LIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVC-- 371
Query: 61 DYMKPDTETYNCVIQAYTR-AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV--ECF 117
+ ++ D TYN +I + A++ Q V EL D + L PN T++ L+ +C
Sbjct: 372 NGIQRDILTYNALIFGLCKQAKTRKAAQFVKEL------DKENLVPNSSTFSALIMGQCV 425
Query: 118 TK 119
K
Sbjct: 426 RK 427
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 119/313 (38%), Gaps = 56/313 (17%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM-K 64
CK G A +I + M G +N L+ G A E++ ++ K
Sbjct: 67 CKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICK 126
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
PD ++N + +++ + D +V +G+M+ K PNV TY+ ++ F K +
Sbjct: 127 PDIVSFNSLFNGFSKMKMLD---EVFVYMGVML---KCCSPNVVTYSTWIDTFCKSGELQ 180
Query: 125 EAIRHFRALQ------NYEGGTKVLHNEGNFGD---PLSLY------------------L 157
A++ F +++ N T ++ GD +SLY +
Sbjct: 181 LALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240
Query: 158 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP---------LQEE 208
C++G + E M +D V P +++ Y T++ + + L +
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVEDR--VEPNSLV----YTTIIDGFFQRGDSDNAMKFLAKM 294
Query: 209 AELGYEIDYIARYISEGGLTGERK-----RWVPRRGKTPLDPDAVGFIYSNPMETSFKQR 263
G +D A + GL G K V K+ L PD V I++ M FK
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV--IFTTMMNAYFKSG 352
Query: 264 CLEDGKKYHRKLL 276
++ + KL+
Sbjct: 353 RMKAAVNMYHKLI 365
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYG 59
+I CKAG A+ EM+ G A + L+ CG + A F E +E G
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+ P TYN +I+ + + ++++ +E+ M+E + ++PNV TY L++
Sbjct: 278 D---SPCAITYNTLIRGFCK---LGQLKEASEIFEFMIE--RGVRPNVYTYTGLIDGLCG 329
Query: 120 YCAVTEAIRHFR-ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178
EA++ ++ E V +N + + LC++G + + +E +E M K
Sbjct: 330 VGKTKEALQLLNLMIEKDEEPNAVTYN---------IIINKLCKDGLVADAVEIVELMKK 380
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI CK G + A + +M + + F +N LLS G + A+ FE M+
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
++ PD ++N +I +A + + L+GM L P++ TY+ L+ F K
Sbjct: 560 NF--PDVVSFNIMIDGSLKAGDIKSAESL--LVGM---SRAGLSPDLFTYSKLINRFLKL 612
Query: 121 CAVTEAIRHF 130
+ EAI F
Sbjct: 613 GYLDEAISFF 622
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI C+ GD A ME G +N L+ + C + E+ A E +
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLI--RRFCELGEMENAEKEVNKMKL 452
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ P ETYN +I Y R +D+ D+ + + ED+ + PNV +Y L+ C K
Sbjct: 453 KGVSPSVETYNILIGGYGRKYEFDKCFDILKEM----EDNGTM-PNVVSYGTLINCLCKG 507
Query: 121 CAVTEA 126
+ EA
Sbjct: 508 SKLLEA 513
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C G +A + EM G +N L+ + G +++ A +E +KP
Sbjct: 540 CSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTG--KLSEAEDLLLEISRKGLKP 597
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTK 119
D TYN +I Y A + R +A + E+ KR ++P +KTY LL+ TK
Sbjct: 598 DVFTYNSLISGYGFAGNVQRC--IA-----LYEEMKRSGIKPTLKTYHLLISLCTK 646
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK ++A ++ EM A + + +N L+ G PE +F E M+ D+++P
Sbjct: 225 CKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMK--ADHIEP 282
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
T+N +++ +A V+D +L M + P+ T+++L F Y + +
Sbjct: 283 SLITFNTLLKGLFKA---GMVEDAENVLKEMKD--LGFVPDAFTFSIL---FDGYSSNEK 334
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166
A AL YE T V S+ L ALC+EG+I
Sbjct: 335 AEA---ALGVYE--TAVDSGVKMNAYTCSILLNALCKEGKI 370
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 17 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 76
I E+E +G + FN +++ + G E A M+ E + P T TYN +I+
Sbjct: 102 IVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMK--ELGLNPTTSTYNTLIKG 159
Query: 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
Y A +R ++ +L M+ E + + PN++T+ +LV+ + K V EA
Sbjct: 160 YGIAGKPERSSELLDL--MLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEA 207
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPD 66
+G+ +A++ +M+ G TT +N L+ G PE + + M E G + P+
Sbjct: 128 SGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPN 187
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
T+N ++QA+ + + +V++ E++ M E R P+ TY + C+ + E
Sbjct: 188 IRTFNVLVQAWCKKK---KVEEAWEVVKKMEECGVR--PDTVTYNTIATCYVQK---GET 239
Query: 127 IR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166
+R ++ K N G + + CREGR+
Sbjct: 240 VRAESEVVEKMVMKEKAKPN----GRTCGIVVGGYCREGRV 276
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 16 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 75
E+ M+ A ++ +++ ++ G E A F+ M + +KPD Y+ + +
Sbjct: 316 EVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMV--KAGVKPDAHAYSILAK 373
Query: 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135
Y RA+ + +++ E L +VE +PNV + ++ + ++ +A+R F +
Sbjct: 374 GYVRAKEPKKAEELLETL--IVES----RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCK 427
Query: 136 Y 136
+
Sbjct: 428 F 428
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 42/233 (18%)
Query: 7 KAGDHSNALEIAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
K+G ++ A++ EME + G T N L+ E A F + D +KP
Sbjct: 215 KSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLF---DTIKP 271
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---YCA 122
D T+N +I + +A +D + + +L+ + P+V TY VE + K +
Sbjct: 272 DARTFNILIHGFCKARKFDDARAMMDLMKV-----TEFTPDVVTYTSFVEAYCKEGDFRR 326
Query: 123 VTEAIRHFR---ALQNYEGGTKVLHNEG---NFGDPLSLY------------------LR 158
V E + R N T V+H+ G + L +Y +
Sbjct: 327 VNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIH 386
Query: 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 211
L + GR + E E M NQ V ++ Y T++S+ + ++E L
Sbjct: 387 ILSKTGRFKDAAEIFEDMT--NQGVRRDVLV----YNTMISAALHHSRDEMAL 433
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 22 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81
E + TT L+ C G + A ATF M+ E + KPD YN +I A R
Sbjct: 157 ENGKNVVTTASITCLMKCLGEEGFVKEALATFYRMK--EYHCKPDVYAYNTIINALCRVG 214
Query: 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
++ + + LL M R P+ TY +L+ + +Y
Sbjct: 215 NFKKARF---LLDQMQLPGFRYPPDTYTYTILISSYCRY 250
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G +AL + EM A +F +N L+ A G A + M+ ++ +KP
Sbjct: 705 CKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKP 762
Query: 66 DTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
D TY I A ++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 763 DIHTYTSFISACSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 811
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G S ALE++ M+ G ++ +++ AFA FE+M ++ MKPD
Sbjct: 496 KVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV--KEGMKPD 553
Query: 67 TETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
YN +I A+ + DR +Q V E+ + R +P +T+ ++ + K
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKL------RHRPTTRTFMPIIHGYAK 601
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
I+ KAGD + A + EMEA G + L+ A +PE A + +E M+
Sbjct: 770 FISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMK--A 827
Query: 61 DYMKPDTETYNCVIQA 76
+KPD Y+C++ +
Sbjct: 828 MGIKPDKAVYHCLLTS 843
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+ + A + EME G A ++ ++ + F+ ++ E
Sbjct: 420 IIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLK--E 477
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
P TY C+I YT+ + +V+ ++ + ++ N+KTY++++ F K
Sbjct: 478 CGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNLKTYSMMINGFVK 531
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 7 KAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMK 64
KAG+ +AL++ Y++ + + T + L+ + G A FE M +YG +
Sbjct: 867 KAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYG---CR 923
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
P+ YN +I + +A D L MV++ R P++KTY++LV+C V
Sbjct: 924 PNCAIYNILINGFGKAGEADAA---CALFKRMVKEGVR--PDLKTYSVLVDCLCMVGRVD 978
Query: 125 EAIRHFRALQ 134
E + +F+ L+
Sbjct: 979 EGLHYFKELK 988
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKP 65
KAG A +I Y ++ G + + +N ++ C + G I E E ME G +P
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG---CEP 536
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D N +I +A DRV + ++ M E +L+P V TY L+ K + E
Sbjct: 537 DVIVVNSLINTLYKA---DRVDEAWKMFMRMKE--MKLKPTVVTYNTLLAGLGKNGKIQE 591
Query: 126 AIRHFRAL 133
AI F +
Sbjct: 592 AIELFEGM 599
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G+ A+++ EM G N L++ + A+ F M+ E +KP
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK--EMKLKPT 572
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
TYN ++ + ++Q+ EL MV+ K PN T+ L +C K VT A
Sbjct: 573 VVTYNTLLAGLGKN---GKIQEAIELFEGMVQ--KGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 127 IRHFRALQNYEGGTKVL-HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP--- 182
++ + + V +N FG L + G++ E + M K P
Sbjct: 628 LKMLFKMMDMGCVPDVFTYNTIIFG---------LVKNGQVKEAMCFFHQMKKLVYPDFV 678
Query: 183 -----VPP--RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 227
+P +A ++ Y+ + + + A L +E D I ++E G+
Sbjct: 679 TLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWE-DLIGSILAEAGI 729
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G + A+E+ +ME ++ ++ G + AF F ME +
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG--ITT 296
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I + A +D D A+LL M++ +++ PNV T+++L++ F K + E
Sbjct: 297 NIITYNILIGGFCNAGRWD---DGAKLLRDMIK--RKINPNVVTFSVLIDSFVKEGKLRE 351
Query: 126 A 126
A
Sbjct: 352 A 352
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 38/162 (23%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQA---------------------- 41
CK G NA + EME G +N L+ C A
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333
Query: 42 -TCGIPEVAFATFENMEYGEDYMK--------PDTETYNCVIQAYTRAESYDRVQDVAEL 92
T + +F + E+ K PDT TY +I + + D+ + +L
Sbjct: 334 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDL 393
Query: 93 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 134
MV K PN++T+ +L+ + K + + + FR +
Sbjct: 394 ---MVS--KGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+ G + A E+ EM + + LL G E A FE +E +
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE--K 501
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
M+ D YN +I A D D+ L + K ++P VKTY +++ K
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPGVKTYNIMIGGLCKK 556
Query: 121 CAVTEAIRHFRALQ 134
++EA FR ++
Sbjct: 557 GPLSEAELLFRKME 570
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD A + +MEAA A ++ ++ + A F ME ++P
Sbjct: 236 CKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME--NKGVRP 293
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TY+ +I +Y+R D + LL M+E +++ PNV T+ L++ F K + E
Sbjct: 294 NVITYSSLISCLC---NYERWSDASRLLSDMIE--RKINPNVVTFNALIDAFVKEGKLVE 348
Query: 126 A 126
A
Sbjct: 349 A 349
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
PD TY+ +I + +DR+ + + +M+ K PNV TY L+ F K +
Sbjct: 363 PDIFTYSSLINGFCM---HDRLDEAKHMFELMIS--KDCFPNVVTYNTLINGFCKAKRID 417
Query: 125 EAIRHFRALQ 134
E + FR +
Sbjct: 418 EGVELFREMS 427
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+ G+ A ++ YEM G ++ L+ G+ A ME E
Sbjct: 429 VITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESE 488
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 115
+ KP + +N +I + D +V E MMVE K+ PN TYA+LVE
Sbjct: 489 N-CKPTVDNFNAMILGLCKIRRTDLAMEVFE---MMVE--KKRMPNETTYAILVE 537
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
++ + CK G+ A+++ +ME G + T +N L+ + C + + +++++ E
Sbjct: 147 LVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALV--RGLCMLGSLN----QSLQFVE 200
Query: 61 DYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 116
M+ P+ TY+ +++A + D + +LL ++ K +PN+ +Y +L+
Sbjct: 201 RLMQKGLAPNAFTYSFLLEAAYKERGTD---EAVKLLDEIIV--KGGEPNLVSYNVLLTG 255
Query: 117 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165
F K +A+ FR L V+ ++ LR LC +GR
Sbjct: 256 FCKEGRTDDAMALFRELPAKGFKANVV--------SYNILLRCLCCDGR 296
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 85/250 (34%), Gaps = 69/250 (27%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK G +A+ + E+ A G A +N LL C G E A + M+ G+ P
Sbjct: 257 CKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDR--AP 314
Query: 66 DTETYNCVI------------------------QAYTRAESYD----------RVQDVAE 91
TYN +I Q A SY+ +V V +
Sbjct: 315 SVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKVDLVVK 374
Query: 92 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---------YEGGTKV 142
L M+ ++R +PN TY + V EA ++L N Y+
Sbjct: 375 CLDEMI--YRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITS 432
Query: 143 LHNEGN-FG-------------DP----LSLYLRALCREGRIIELLEALEAMAKDNQPVP 184
L +GN F DP S +R LC EG +E L M + P
Sbjct: 433 LCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESENCKP 492
Query: 185 P----RAMIL 190
AMIL
Sbjct: 493 TVDNFNAMIL 502
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI+ CKAG+ +NAL + M + + T +N +L G + A + M +
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVVT---YNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
Y PD TY +I+A R V +LL M + + P+V TY +LV K
Sbjct: 235 CY--PDVITYTILIEATCRDSG---VGHAMKLLDEMRD--RGCTPDVVTYNVLVNGICKE 287
Query: 121 CAVTEAIRHFRALQNYEGGTKVL-HNEGNFGDPLSLYLRALCREGR 165
+ EAI+ + + V+ HN + LR++C GR
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHN---------IILRSMCSTGR 324
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK G S+A + M + G F FN L+ +T E A + M ++ + P
Sbjct: 437 CKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML--DNGVDP 494
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D TYN ++ + + +DV E MVE K PN+ T+ +L+E +Y + E
Sbjct: 495 DVYTYNSLLNGLCKTSKF---EDVMETYKTMVE--KGCAPNLFTFNILLESLCRYRKLDE 549
Query: 126 AIRHFRALQN 135
A+ ++N
Sbjct: 550 ALGLLEEMKN 559
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600
OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 29 TTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87
TT FN ++ C A G+ + A F+ ME GE K D T+ ++ A + A +
Sbjct: 353 TTVTFNSMIFCYANHGLADKAVELFDQMEATGE---KLDHLTFTAILTACSHAG----LT 405
Query: 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 134
D+ + L +++++ R+ P ++ YA +V+ + + EA +A++
Sbjct: 406 DLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMR 452
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +MEAA A ++ ++ + A F ME ++P
Sbjct: 229 CKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME--NKGVRP 286
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+ TY+ +I +Y R D + LL M+E +++ PN+ T++ L++ F K
Sbjct: 287 NVITYSSLISCLC---NYGRWSDASRLLSDMIE--RKINPNLVTFSALIDAFVK 335
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK +A ++ +ME G F +N L+SC G A +M E + P
Sbjct: 261 CKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML--EKNINP 318
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D +N +I A+ + ++ + +L MV+ K P+V Y L++ F KY V E
Sbjct: 319 DLVFFNALIDAFVKE---GKLVEAEKLYDEMVKS-KHCFPDVVAYNTLIKGFCKYKRVEE 374
Query: 126 AIRHFRALQ 134
+ FR +
Sbjct: 375 GMEVFREMS 383
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+ +A+++ +ME G +N ++ G+ A F+ ME
Sbjct: 145 LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME--R 202
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
D ++ D TYN ++ + R D A L+ MV + + PNV T+ +++ F K
Sbjct: 203 DGVRADAVTYNSLVAGLCCS---GRWSDAARLMRDMV--MRDIVPNVITFTAVIDVFVKE 257
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177
+EA++ YE T+ + F + + LC GR+ E + L+ M
Sbjct: 258 GKFSEAMKL------YEEMTRRCVDPDVF--TYNSLINGLCMHGRVDEAKQMLDLMV 306
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C G A ++ M G + +N L++ C V T E +
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLIN--GFCKSKRVDEGTKLFREMAQ 342
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ DT TYN +IQ Y +A D Q++ + +PN++TY++L+
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS--------RPNIRTYSILLYGLCMN 394
Query: 121 CAVTEAIRHFRALQNYE 137
V +A+ F +Q E
Sbjct: 395 WRVEKALVLFENMQKSE 411
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I K+GD S AL++ +A G A T ++S A G A A FE E +
Sbjct: 275 IIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFE--ELRQ 332
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+KP T YN +++ Y + ++D ++ M + + + P+ TY+LL++ +
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGP---LKDAESMVSEM--EKRGVSPDEHTYSLLIDAYVN 386
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K+G ++A+E EM++ G ++ +N L++ A G+ E A F M D +KP
Sbjct: 561 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT--SDGLKPS 618
Query: 67 TETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
N +I A+ AE++ +Q + E ++P+V TY L++ +
Sbjct: 619 LLALNSLINAFGEDRRDAEAFAVLQYMKE---------NGVKPDVVTYTTLMKALIR 666
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I AG +A + EMEA +F F+ LL+ G + F + M+
Sbjct: 380 LIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK--S 437
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+KPD + YN VI + + D + M+ E ++P+ T+ L++C K+
Sbjct: 438 IGVKPDRQFYNVVIDTFGKFNCLDHAMTTFD--RMLSEG---IEPDRVTWNTLIDCHCKH 492
Query: 121 CAVTEAIRHFRALQ 134
A F A++
Sbjct: 493 GRHIVAEEMFEAME 506
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K+GD A ++ EME G F +N L+S + A + + ME + P+
Sbjct: 215 KSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPN 272
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
TYN I ++R R+++ L + +D + N TY L++ + + + EA
Sbjct: 273 IVTYNSFIHGFSRE---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCRMNDIDEA 326
Query: 127 IRHFRALQNYEGGTK--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177
+R R + G + V +N LR LC +GRI E L M+
Sbjct: 327 LR-LREVMESRGFSPGVVTYNS---------ILRKLCEDGRIREANRLLTEMS 369
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G + A+E+ +ME ++ ++ G + AF F ME K
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI--KGFKA 280
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D Y +I+ + A +D D A+LL M++ +++ P+V ++ L++CF K + E
Sbjct: 281 DIIIYTTLIRGFCYAGRWD---DGAKLLRDMIK--RKITPDVVAFSALIDCFVKEGKLRE 335
Query: 126 A 126
A
Sbjct: 336 A 336
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I C+ G A E+ EM + + LL G PE A FE +E +
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE--K 485
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
M+ D YN +I A D D+ L + K ++P+VKTY +++ K
Sbjct: 486 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPDVKTYNIMIGGLCKK 540
Query: 121 CAVTEAIRHFRALQ 134
+++EA FR ++
Sbjct: 541 GSLSEADLLFRKME 554
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 63 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 122
+ PDT TY +I + + D+ +L +MV K PN++T+ +L+ + K
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNILINGYCKANL 402
Query: 123 VTEAIRHFRALQ 134
+ + + FR +
Sbjct: 403 IDDGLELFRKMS 414
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68
G A + EM G ++ ++SC + G F+ M+ ++ ++PD +
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMK--KECIEPDRK 338
Query: 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 128
YN V+ A +A V + L+ M E+ K ++PNV TY L++ K EA +
Sbjct: 339 VYNAVVHALAKASF---VSEARNLMKTM-EEEKGIEPNVVTYNSLIKPLCKARKTEEAKQ 394
Query: 129 HF 130
F
Sbjct: 395 VF 396
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C+ G S A ++ +M +G FN+L+ G E + M+ + +P
Sbjct: 301 CRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMK--KLGCEP 358
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110
DT TYN +I+A+ R E+ +++ ++L M++ K+ + N T+
Sbjct: 359 DTITYNFLIEAHCRDEN---LENAVKVLNTMIK--KKCEVNASTF 398
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 117
P+T TYN +++ + ++S D V + + + D K ++PNV TY LLV F
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEM-----DDKEVEPNVNTYRLLVTMF 475
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C+AG+ S A ++ EM+ AG + ++ ++ CG A F +M + P
Sbjct: 266 CRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADML--DSGCAP 323
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL--QPNVKTYALLVE 115
+ T+N +++ + +A R + V ++ M K+L +P+ TY L+E
Sbjct: 324 NAITFNNLMRVHVKA---GRTEKVLQVYNQM----KKLGCEPDTITYNFLIE 368
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 44 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103
G ++A + + ME G+ ++P YN +I A +Y V D L M D+K +
Sbjct: 235 GDIDLALSLLKKMEQGK--IEPGVVIYNTIIDALC---NYKNVNDALNLFTEM--DNKGI 287
Query: 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163
+PNV TY L+ C Y ++A R + + V+ S + A +E
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV--------TFSALIDAFVKE 339
Query: 164 GRIIELLEALEAMAK 178
G+++E + + M K
Sbjct: 340 GKLVEAEKLYDEMIK 354
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 13 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 72
NA + +M + G + ++ LL G E A FE ++ + M+PD TYN
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK--MEPDIYTYNI 506
Query: 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132
+I+ +A +V+D +L + K ++PNV TY ++ F + EA FR
Sbjct: 507 MIEGMCKA---GKVEDGWDLFCSL--SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561
Query: 133 LQ 134
++
Sbjct: 562 MK 563
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
PD TY+ +I + +DR+ + + +M+ K PNV TY L++ F K V
Sbjct: 359 PDIFTYSSLINGFCM---HDRLDEAKHMFELMIS--KDCFPNVVTYNTLIKGFCKAKRVD 413
Query: 125 EAIRHFRALQ 134
E + FR +
Sbjct: 414 EGMELFREMS 423
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 52/226 (23%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK +AL + EME G ++ L+SC G A +M E + P
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI--ERKINP 324
Query: 66 DTETYNCVIQAYTR------AES--------------------------YDRVQDVAELL 93
D T++ +I A+ + AE +DR+ + ++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 94 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGNFGDP 152
MV H P+V TY L++ F KY V E + FR + Q G V +N
Sbjct: 385 EFMVSKH--CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN------- 435
Query: 153 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 198
+ ++ L + G E + M D VPP M Y TL+
Sbjct: 436 --ILIQGLFQAGDCDMAQEIFKEMVSDG--VPPNIM----TYNTLL 473
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 44 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103
G ++AF ME G+ ++P YN +I + Y + D L M + K +
Sbjct: 235 GDTDLAFNLLNKMEQGK--LEPGVLIYNTIIDGLCK---YKHMDDALNLFKEM--ETKGI 287
Query: 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163
+PNV TY+ L+ C Y ++A R + + V S + A +E
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF--------TFSALIDAFVKE 339
Query: 164 GRIIELLEALEAMAK 178
G+++E + + M K
Sbjct: 340 GKLVEAEKLYDEMVK 354
>sp|Q84J46|PP262_ARATH Pentatricopeptide repeat-containing protein At3g29290
OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1
Length = 540
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G A+++ YEME +G +T +N ++S +VA +E+M + KP+
Sbjct: 402 KLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHM--AQRDCKPN 459
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110
T TY ++++ +D V+D+ K+++P+V Y
Sbjct: 460 TFTYLSLVRSCIWGSLWDEVEDIL----------KKVEPDVSLY 493
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
C G + AL + +EM G + + F LLS G+ A F M E +KP
Sbjct: 483 CSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM--AEWNVKP 540
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I+ Y E D + E L M E K + P+ +Y L+ +E
Sbjct: 541 NRVTYNVMIEGY--CEEGD-MSKAFEFLKEMTE--KGIVPDTYSYRPLIHGLCLTGQASE 595
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178
A L ++G ++ NE + + L CREG++ E L + M +
Sbjct: 596 AKVFVDGL--HKGNCEL--NEICY----TGLLHGFCREGKLEEALSVCQEMVQ 640
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,125,506
Number of Sequences: 539616
Number of extensions: 11630841
Number of successful extensions: 68322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 1092
Number of HSP's that attempted gapping in prelim test: 59202
Number of HSP's gapped (non-prelim): 5839
length of query: 670
length of database: 191,569,459
effective HSP length: 124
effective length of query: 546
effective length of database: 124,657,075
effective search space: 68062762950
effective search space used: 68062762950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)