Query 005912
Match_columns 670
No_of_seqs 328 out of 2511
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-50 4.8E-55 482.5 51.0 476 2-649 413-916 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2E-49 4.4E-54 474.2 51.8 454 1-658 376-857 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.5E-48 5.5E-53 465.8 45.0 468 1-658 158-667 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.8E-48 6.1E-53 465.4 44.1 525 1-661 57-638 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-47 4.5E-52 448.2 41.7 425 1-647 129-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-44 4.8E-49 422.6 41.4 440 1-657 93-537 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.7 3.4E-13 7.3E-18 160.2 45.9 486 3-640 405-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.7 6.9E-12 1.5E-16 149.1 49.6 308 2-360 336-656 (899)
9 PRK11788 tetratricopeptide rep 99.5 2.3E-11 5E-16 132.7 33.7 288 5-359 45-338 (389)
10 KOG4422 Uncharacterized conser 99.5 5.7E-11 1.2E-15 125.5 33.1 465 5-639 125-622 (625)
11 PRK11788 tetratricopeptide rep 99.5 2.2E-11 4.8E-16 132.8 29.8 283 2-357 76-365 (389)
12 PF13041 PPR_2: PPR repeat fam 99.3 5.8E-12 1.3E-16 96.9 6.5 50 65-119 1-50 (50)
13 KOG4422 Uncharacterized conser 99.3 1.3E-09 2.8E-14 115.4 26.0 317 1-361 213-544 (625)
14 PF13041 PPR_2: PPR repeat fam 99.3 4.7E-12 1E-16 97.4 5.6 50 28-79 1-50 (50)
15 KOG4318 Bicoid mRNA stability 99.1 1.3E-08 2.7E-13 116.0 21.2 276 16-360 11-292 (1088)
16 PRK15174 Vi polysaccharide exp 98.9 2E-06 4.4E-11 101.0 35.3 344 2-398 49-415 (656)
17 PRK15174 Vi polysaccharide exp 98.7 2.3E-05 4.9E-10 92.2 34.6 311 6-361 16-340 (656)
18 PRK11447 cellulose synthase su 98.7 0.00054 1.2E-08 85.8 47.7 319 4-361 37-407 (1157)
19 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 5E-13 70.4 4.5 32 25-56 2-33 (34)
20 PRK11447 cellulose synthase su 98.6 0.00038 8.3E-09 87.2 43.0 156 4-178 278-446 (1157)
21 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.4E-13 69.0 4.3 34 61-97 1-34 (34)
22 TIGR00990 3a0801s09 mitochondr 98.6 5.5E-05 1.2E-09 88.3 32.7 260 8-335 307-572 (615)
23 PRK14574 hmsH outer membrane p 98.6 0.0011 2.4E-08 79.3 42.6 306 4-360 43-388 (822)
24 PRK10049 pgaA outer membrane p 98.5 0.0013 2.9E-08 78.8 41.2 155 3-177 23-177 (765)
25 TIGR00990 3a0801s09 mitochondr 98.5 6.6E-05 1.4E-09 87.7 29.2 231 4-283 340-572 (615)
26 TIGR02521 type_IV_pilW type IV 98.4 0.00013 2.7E-09 72.0 23.7 159 3-179 39-198 (234)
27 TIGR02521 type_IV_pilW type IV 98.3 0.00037 8E-09 68.6 24.8 202 29-281 30-231 (234)
28 PRK10049 pgaA outer membrane p 98.2 0.0084 1.8E-07 72.0 39.4 324 3-361 57-449 (765)
29 PF13429 TPR_15: Tetratricopep 98.2 1.1E-05 2.3E-10 84.6 12.6 256 4-330 17-273 (280)
30 PRK10747 putative protoheme IX 98.2 0.0021 4.6E-08 71.1 31.0 283 8-361 97-383 (398)
31 PRK14574 hmsH outer membrane p 98.2 0.0065 1.4E-07 72.9 36.5 318 2-361 75-438 (822)
32 PF13429 TPR_15: Tetratricopep 98.1 3.6E-05 7.7E-10 80.6 13.5 151 8-177 57-207 (280)
33 PRK10747 putative protoheme IX 98.1 0.0018 4E-08 71.5 26.6 247 6-281 129-389 (398)
34 KOG4626 O-linked N-acetylgluco 98.0 0.0021 4.6E-08 71.9 25.9 324 3-361 124-478 (966)
35 KOG1840 Kinesin light chain [C 98.0 0.00071 1.5E-08 76.3 20.8 248 2-281 206-478 (508)
36 PRK09782 bacteriophage N4 rece 97.9 0.0038 8.3E-08 76.3 28.5 218 8-283 489-707 (987)
37 TIGR00540 hemY_coli hemY prote 97.9 0.0025 5.5E-08 70.7 24.9 254 7-280 96-397 (409)
38 TIGR00756 PPR pentatricopeptid 97.9 1.4E-05 3E-10 55.5 4.0 33 69-106 2-34 (35)
39 KOG4626 O-linked N-acetylgluco 97.9 0.0035 7.6E-08 70.2 24.3 221 30-284 116-351 (966)
40 KOG4318 Bicoid mRNA stability 97.9 0.00016 3.4E-09 83.5 13.9 77 1-91 31-107 (1088)
41 PRK09782 bacteriophage N4 rece 97.9 0.0038 8.3E-08 76.3 26.2 192 5-247 519-710 (987)
42 TIGR00756 PPR pentatricopeptid 97.8 1.4E-05 3E-10 55.5 2.9 35 31-67 1-35 (35)
43 TIGR00540 hemY_coli hemY prote 97.8 0.062 1.3E-06 59.7 32.7 283 34-360 86-391 (409)
44 KOG2047 mRNA splicing factor [ 97.8 0.037 8.1E-07 62.6 29.5 196 70-280 390-613 (835)
45 PF13812 PPR_3: Pentatricopept 97.7 3.3E-05 7.2E-10 53.6 3.1 33 68-105 2-34 (34)
46 PRK12370 invasion protein regu 97.7 0.0091 2E-07 69.0 25.0 214 11-282 277-502 (553)
47 PRK12370 invasion protein regu 97.7 0.0055 1.2E-07 70.8 23.2 152 8-179 317-470 (553)
48 PF13812 PPR_3: Pentatricopept 97.7 5.8E-05 1.2E-09 52.3 4.0 33 31-65 2-34 (34)
49 PF01535 PPR: PPR repeat; Int 97.6 6.3E-05 1.4E-09 50.9 3.5 30 152-181 2-31 (31)
50 KOG1126 DNA-binding cell divis 97.6 0.018 3.8E-07 65.4 24.3 282 10-365 334-617 (638)
51 KOG1840 Kinesin light chain [C 97.6 0.021 4.6E-07 64.6 25.1 258 30-332 199-477 (508)
52 COG2956 Predicted N-acetylgluc 97.5 0.054 1.2E-06 57.0 24.9 158 6-180 46-210 (389)
53 KOG2003 TPR repeat-containing 97.5 0.043 9.2E-07 59.6 24.0 75 219-305 633-707 (840)
54 PF12569 NARP1: NMDA receptor- 97.5 0.12 2.7E-06 58.9 29.5 267 3-281 12-333 (517)
55 COG3071 HemY Uncharacterized e 97.4 0.13 2.8E-06 55.5 27.2 279 34-360 86-382 (400)
56 PF01535 PPR: PPR repeat; Int 97.4 0.00013 2.8E-09 49.4 3.0 27 69-98 2-28 (31)
57 PF08579 RPM2: Mitochondrial r 97.4 0.0014 2.9E-08 58.8 9.9 83 34-120 29-117 (120)
58 PF08579 RPM2: Mitochondrial r 97.4 0.00084 1.8E-08 60.1 8.3 77 2-80 32-117 (120)
59 KOG1070 rRNA processing protei 97.3 0.084 1.8E-06 64.4 26.1 204 29-285 1457-1666(1710)
60 PF10037 MRP-S27: Mitochondria 97.3 0.0011 2.3E-08 73.3 9.9 80 34-120 107-186 (429)
61 cd05804 StaR_like StaR_like; a 97.3 0.31 6.6E-06 52.4 28.6 157 5-179 53-215 (355)
62 PF04733 Coatomer_E: Coatomer 97.2 0.0053 1.2E-07 65.0 14.2 151 5-179 112-265 (290)
63 KOG1915 Cell cycle control pro 97.2 0.55 1.2E-05 51.9 30.2 303 8-363 154-495 (677)
64 KOG1126 DNA-binding cell divis 97.2 0.041 9E-07 62.5 20.6 237 3-306 361-605 (638)
65 PRK11189 lipoprotein NlpI; Pro 97.1 0.44 9.5E-06 50.5 27.1 149 9-178 40-193 (296)
66 COG3071 HemY Uncharacterized e 97.1 0.42 9.2E-06 51.6 26.1 254 8-284 97-392 (400)
67 KOG1129 TPR repeat-containing 97.0 0.033 7.2E-07 58.5 16.9 220 34-282 227-458 (478)
68 TIGR03302 OM_YfiO outer membra 97.0 0.062 1.4E-06 54.3 19.1 162 3-180 41-233 (235)
69 PF12569 NARP1: NMDA receptor- 97.0 0.41 8.8E-06 54.8 27.3 92 250-361 193-284 (517)
70 COG2956 Predicted N-acetylgluc 97.0 0.27 5.9E-06 51.9 23.3 120 43-181 48-172 (389)
71 PF10037 MRP-S27: Mitochondria 96.9 0.0093 2E-07 66.0 12.7 134 17-163 50-186 (429)
72 KOG1155 Anaphase-promoting com 96.9 0.71 1.5E-05 50.9 26.3 113 223-360 409-528 (559)
73 PF06239 ECSIT: Evolutionarily 96.9 0.0044 9.6E-08 61.8 8.9 106 26-135 43-167 (228)
74 PRK11189 lipoprotein NlpI; Pro 96.8 0.18 3.9E-06 53.4 21.5 189 4-241 73-265 (296)
75 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.076 1.6E-06 58.5 17.8 124 34-178 173-296 (395)
76 PF04733 Coatomer_E: Coatomer 96.7 0.089 1.9E-06 55.7 17.3 28 108-135 132-159 (290)
77 PF06239 ECSIT: Evolutionarily 96.6 0.008 1.7E-07 60.0 8.3 88 7-98 64-167 (228)
78 KOG3081 Vesicle coat complex C 96.5 0.072 1.6E-06 54.7 14.7 153 4-179 117-271 (299)
79 KOG2076 RNA polymerase III tra 96.5 2.8 6E-05 49.8 32.8 318 4-361 149-505 (895)
80 KOG1129 TPR repeat-containing 96.5 0.15 3.3E-06 53.7 16.8 163 60-238 216-384 (478)
81 KOG1070 rRNA processing protei 96.4 0.12 2.7E-06 63.0 17.7 151 10-181 1512-1665(1710)
82 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.062 1.3E-06 59.2 14.3 120 1-134 175-295 (395)
83 KOG0495 HAT repeat protein [RN 96.3 3 6.6E-05 48.0 31.3 312 4-356 525-868 (913)
84 COG3063 PilF Tfp pilus assembl 96.3 0.61 1.3E-05 47.2 19.3 159 4-181 44-204 (250)
85 PF05843 Suf: Suppressor of fo 96.2 0.049 1.1E-06 57.3 12.0 136 30-179 1-136 (280)
86 PRK10370 formate-dependent nit 96.0 0.95 2.1E-05 45.1 19.8 148 3-181 24-175 (198)
87 KOG1155 Anaphase-promoting com 96.0 0.94 2E-05 50.0 20.7 155 3-178 338-494 (559)
88 KOG3617 WD40 and TPR repeat-co 96.0 0.58 1.3E-05 54.7 19.7 192 4-239 737-939 (1416)
89 KOG0547 Translocase of outer m 96.0 0.98 2.1E-05 50.2 20.7 228 6-281 337-565 (606)
90 TIGR03302 OM_YfiO outer membra 96.0 1.1 2.4E-05 45.2 20.5 180 29-241 32-232 (235)
91 KOG3785 Uncharacterized conser 96.0 2 4.4E-05 46.0 22.2 169 156-359 291-481 (557)
92 COG4783 Putative Zn-dependent 95.8 1.3 2.7E-05 49.3 20.6 110 8-128 319-429 (484)
93 cd00189 TPR Tetratricopeptide 95.6 0.24 5.1E-06 40.0 11.4 94 33-135 3-96 (100)
94 cd00189 TPR Tetratricopeptide 95.6 0.21 4.6E-06 40.3 11.1 95 69-179 2-97 (100)
95 KOG2002 TPR-containing nuclear 95.6 5 0.00011 48.1 25.5 289 8-362 177-475 (1018)
96 TIGR02795 tol_pal_ybgF tol-pal 95.5 0.35 7.6E-06 42.5 13.1 103 32-137 4-106 (119)
97 PRK15359 type III secretion sy 95.5 1.2 2.7E-05 41.8 17.1 96 69-180 26-122 (144)
98 TIGR02552 LcrH_SycD type III s 95.4 0.27 5.8E-06 44.9 12.2 101 29-138 16-116 (135)
99 KOG3616 Selective LIM binding 95.4 1.3 2.8E-05 51.2 19.1 150 85-279 747-908 (1636)
100 KOG2076 RNA polymerase III tra 95.4 8.5 0.00019 45.9 32.8 314 4-359 182-546 (895)
101 KOG3081 Vesicle coat complex C 95.3 2.9 6.3E-05 43.3 19.8 146 17-188 95-244 (299)
102 TIGR02795 tol_pal_ybgF tol-pal 95.3 0.44 9.6E-06 41.9 12.9 103 69-180 4-106 (119)
103 COG5010 TadD Flp pilus assembl 95.0 3.2 6.9E-05 42.8 19.4 127 36-180 72-198 (257)
104 COG5010 TadD Flp pilus assembl 95.0 1.4 3E-05 45.4 16.7 129 29-176 99-228 (257)
105 KOG2003 TPR repeat-containing 95.0 1 2.2E-05 49.4 16.2 98 66-179 591-689 (840)
106 PRK14720 transcript cleavage f 94.9 4.2 9.1E-05 49.3 23.1 241 1-307 37-305 (906)
107 KOG1128 Uncharacterized conser 94.9 1.2 2.6E-05 51.6 17.6 232 34-351 402-635 (777)
108 KOG3616 Selective LIM binding 94.8 0.56 1.2E-05 54.0 14.4 137 3-176 740-876 (1636)
109 PF12921 ATP13: Mitochondrial 94.8 0.36 7.9E-06 44.6 11.1 90 29-122 1-103 (126)
110 TIGR02552 LcrH_SycD type III s 94.8 0.54 1.2E-05 42.8 12.5 101 3-114 25-125 (135)
111 PRK15359 type III secretion sy 94.8 0.63 1.4E-05 43.7 12.9 108 16-137 14-122 (144)
112 COG3063 PilF Tfp pilus assembl 94.7 5.5 0.00012 40.5 21.1 194 33-279 38-233 (250)
113 KOG2047 mRNA splicing factor [ 94.7 11 0.00024 43.6 27.7 31 152-182 250-280 (835)
114 KOG2002 TPR-containing nuclear 94.6 14 0.0003 44.6 41.3 251 4-282 208-481 (1018)
115 KOG3785 Uncharacterized conser 94.6 1.3 2.8E-05 47.4 15.6 156 8-178 372-533 (557)
116 PRK10370 formate-dependent nit 94.4 1.5 3.2E-05 43.7 15.3 122 8-138 52-175 (198)
117 PF09976 TPR_21: Tetratricopep 94.4 1.4 3.1E-05 41.2 14.5 125 31-175 13-143 (145)
118 COG4783 Putative Zn-dependent 94.4 0.97 2.1E-05 50.2 14.9 118 41-178 317-436 (484)
119 PRK15179 Vi polysaccharide bio 94.4 5.5 0.00012 47.4 22.3 135 26-180 82-218 (694)
120 PRK04841 transcriptional regul 94.3 17 0.00037 44.4 28.7 245 5-282 462-720 (903)
121 KOG1174 Anaphase-promoting com 94.1 8 0.00017 42.5 20.3 160 102-277 227-392 (564)
122 KOG4340 Uncharacterized conser 94.0 3.2 7E-05 43.5 16.7 126 43-179 125-270 (459)
123 PF09976 TPR_21: Tetratricopep 93.9 2.5 5.5E-05 39.5 15.1 116 7-132 23-143 (145)
124 PF14559 TPR_19: Tetratricopep 93.8 0.34 7.3E-06 38.7 7.7 65 6-75 2-66 (68)
125 PF05843 Suf: Suppressor of fo 93.7 0.78 1.7E-05 48.3 12.2 99 67-179 1-99 (280)
126 KOG1914 mRNA cleavage and poly 93.6 1.8 3.8E-05 48.8 14.8 153 11-179 347-501 (656)
127 KOG1173 Anaphase-promoting com 93.1 19 0.00041 41.0 22.0 262 5-300 254-530 (611)
128 KOG3941 Intermediate in Toll s 93.1 0.45 9.8E-06 49.3 8.7 104 29-136 66-188 (406)
129 cd05804 StaR_like StaR_like; a 92.9 15 0.00032 39.2 30.7 195 5-240 16-214 (355)
130 KOG0495 HAT repeat protein [RN 92.8 23 0.0005 41.2 30.4 336 7-416 452-810 (913)
131 PLN03088 SGT1, suppressor of 92.8 1.6 3.5E-05 47.6 13.4 98 5-114 12-110 (356)
132 KOG1173 Anaphase-promoting com 92.5 23 0.00051 40.4 26.9 280 29-352 243-535 (611)
133 KOG1128 Uncharacterized conser 92.5 2.5 5.5E-05 49.1 14.4 152 4-180 407-583 (777)
134 KOG3617 WD40 and TPR repeat-co 92.4 4.4 9.6E-05 47.7 16.2 117 29-175 725-851 (1416)
135 PF04840 Vps16_C: Vps16, C-ter 92.3 3 6.6E-05 44.8 14.4 107 31-172 178-284 (319)
136 PF12921 ATP13: Mitochondrial 92.3 1.5 3.3E-05 40.4 10.6 88 66-163 1-101 (126)
137 PF12895 Apc3: Anaphase-promot 92.1 0.55 1.2E-05 39.5 6.9 80 8-95 2-83 (84)
138 KOG4340 Uncharacterized conser 91.8 19 0.00042 38.0 22.8 165 3-185 18-213 (459)
139 PF12895 Apc3: Anaphase-promot 91.8 0.27 5.8E-06 41.4 4.5 81 43-132 2-83 (84)
140 PRK02603 photosystem I assembl 91.6 6.5 0.00014 37.8 14.6 85 29-122 34-121 (172)
141 PLN03098 LPA1 LOW PSII ACCUMUL 91.3 5.2 0.00011 44.6 14.9 65 65-136 73-141 (453)
142 KOG1914 mRNA cleavage and poly 91.3 16 0.00034 41.5 18.4 119 46-181 347-466 (656)
143 PRK15179 Vi polysaccharide bio 91.2 5.5 0.00012 47.4 16.2 120 4-136 95-217 (694)
144 KOG2376 Signal recognition par 91.2 33 0.00072 39.4 32.1 109 259-369 382-521 (652)
145 PRK02603 photosystem I assembl 90.9 5.4 0.00012 38.4 13.3 74 4-81 44-120 (172)
146 KOG0547 Translocase of outer m 90.7 32 0.00069 38.8 19.9 223 40-333 336-565 (606)
147 PF13170 DUF4003: Protein of u 90.5 6.4 0.00014 41.9 14.4 130 46-187 78-219 (297)
148 COG5107 RNA14 Pre-mRNA 3'-end 90.3 3.4 7.4E-05 45.6 12.0 134 29-179 396-531 (660)
149 KOG3941 Intermediate in Toll s 90.0 1.5 3.2E-05 45.7 8.6 71 9-81 86-172 (406)
150 PRK04841 transcriptional regul 90.0 55 0.0012 40.0 30.8 309 5-360 419-752 (903)
151 CHL00033 ycf3 photosystem I as 89.8 6.3 0.00014 37.7 12.7 95 66-174 34-137 (168)
152 KOG0985 Vesicle coat protein c 89.7 58 0.0013 39.9 32.5 128 38-175 614-749 (1666)
153 smart00299 CLH Clathrin heavy 89.5 8.6 0.00019 35.5 13.0 111 33-175 10-121 (140)
154 CHL00033 ycf3 photosystem I as 89.4 10 0.00023 36.1 13.9 114 11-133 15-139 (168)
155 PLN03088 SGT1, suppressor of 89.4 3.9 8.5E-05 44.6 12.1 90 38-137 10-100 (356)
156 PF14559 TPR_19: Tetratricopep 89.4 1 2.2E-05 35.8 5.8 63 41-114 2-65 (68)
157 PF03704 BTAD: Bacterial trans 89.3 0.74 1.6E-05 43.0 5.6 75 31-111 63-140 (146)
158 KOG1915 Cell cycle control pro 89.2 12 0.00027 41.7 15.3 82 43-135 154-235 (677)
159 PF12688 TPR_5: Tetratrico pep 89.1 11 0.00025 34.4 13.0 103 4-119 10-118 (120)
160 PF03704 BTAD: Bacterial trans 89.1 3.1 6.7E-05 38.7 9.7 90 549-651 45-139 (146)
161 PRK14720 transcript cleavage f 89.0 42 0.00092 41.0 21.1 222 25-303 25-268 (906)
162 PF07035 Mic1: Colon cancer-as 88.9 24 0.00051 34.3 15.8 23 153-175 92-114 (167)
163 PF07035 Mic1: Colon cancer-as 88.4 9.9 0.00022 36.9 12.7 139 14-181 13-151 (167)
164 PF14938 SNAP: Soluble NSF att 88.2 36 0.00079 35.6 20.0 62 113-181 120-186 (282)
165 smart00299 CLH Clathrin heavy 87.5 12 0.00026 34.5 12.6 108 1-132 13-121 (140)
166 KOG1156 N-terminal acetyltrans 87.4 64 0.0014 37.6 22.4 98 152-285 373-471 (700)
167 KOG2053 Mitochondrial inherita 87.3 76 0.0017 38.3 26.1 55 264-335 201-256 (932)
168 PF14938 SNAP: Soluble NSF att 86.6 45 0.00097 34.9 18.5 84 220-304 163-247 (282)
169 PRK10866 outer membrane biogen 86.2 44 0.00095 34.4 17.1 163 5-177 42-239 (243)
170 PF13170 DUF4003: Protein of u 86.1 20 0.00043 38.2 14.6 128 11-143 78-218 (297)
171 PF13432 TPR_16: Tetratricopep 85.9 3.2 7E-05 32.7 6.7 58 114-180 4-61 (65)
172 PF07079 DUF1347: Protein of u 85.7 51 0.0011 36.9 17.4 166 42-217 18-197 (549)
173 PRK10803 tol-pal system protei 85.4 12 0.00026 39.1 12.4 101 67-180 143-247 (263)
174 PRK10803 tol-pal system protei 85.3 12 0.00027 39.0 12.5 101 30-137 143-247 (263)
175 KOG2053 Mitochondrial inherita 85.2 72 0.0016 38.5 19.4 75 5-84 53-127 (932)
176 PF13432 TPR_16: Tetratricopep 85.1 4 8.7E-05 32.1 6.9 18 40-57 7-24 (65)
177 PF13424 TPR_12: Tetratricopep 84.8 3.6 7.8E-05 33.7 6.7 66 108-177 6-73 (78)
178 PRK10153 DNA-binding transcrip 84.7 63 0.0014 37.2 18.9 142 24-180 331-483 (517)
179 KOG0985 Vesicle coat protein c 83.7 1.2E+02 0.0026 37.4 25.0 131 6-173 1059-1189(1666)
180 PLN02789 farnesyltranstransfer 83.4 70 0.0015 34.4 24.7 159 4-180 46-213 (320)
181 PF04053 Coatomer_WDAD: Coatom 82.8 28 0.00061 39.2 14.7 151 6-204 272-424 (443)
182 PF13762 MNE1: Mitochondrial s 82.3 13 0.00027 35.3 9.8 95 21-120 28-128 (145)
183 PF13414 TPR_11: TPR repeat; P 81.3 7.5 0.00016 30.8 7.2 64 106-178 2-66 (69)
184 PF12688 TPR_5: Tetratrico pep 80.6 46 0.00099 30.4 12.8 89 38-135 9-103 (120)
185 PRK10866 outer membrane biogen 80.5 73 0.0016 32.7 21.0 176 73-280 38-239 (243)
186 PF13414 TPR_11: TPR repeat; P 80.1 10 0.00022 30.1 7.5 63 66-135 2-66 (69)
187 KOG0624 dsRNA-activated protei 79.9 95 0.0021 33.7 22.1 200 36-283 44-253 (504)
188 PF04053 Coatomer_WDAD: Coatom 79.6 25 0.00055 39.6 12.9 125 4-176 304-428 (443)
189 PRK10153 DNA-binding transcrip 77.8 72 0.0016 36.8 16.2 118 11-138 358-484 (517)
190 PF13371 TPR_9: Tetratricopept 77.1 10 0.00023 30.3 6.8 56 2-58 2-57 (73)
191 KOG2140 Uncharacterized conser 77.1 94 0.002 35.4 15.8 23 579-601 487-509 (739)
192 COG5107 RNA14 Pre-mRNA 3'-end 76.9 23 0.00049 39.5 10.9 122 2-135 404-530 (660)
193 KOG1174 Anaphase-promoting com 76.6 1.3E+02 0.0028 33.4 25.3 152 4-175 205-393 (564)
194 PF13424 TPR_12: Tetratricopep 76.3 11 0.00023 30.8 6.8 65 68-135 6-74 (78)
195 PF13525 YfiO: Outer membrane 74.7 90 0.0019 30.9 14.2 146 4-180 14-171 (203)
196 COG5108 RPO41 Mitochondrial DN 74.0 21 0.00045 41.5 10.0 100 34-135 32-131 (1117)
197 PF04097 Nic96: Nup93/Nic96; 73.5 7.2 0.00016 45.8 6.8 137 511-660 3-157 (613)
198 KOG0943 Predicted ubiquitin-pr 73.4 1.4 3.1E-05 53.2 0.9 10 397-406 1704-1714(3015)
199 PF13371 TPR_9: Tetratricopept 73.3 17 0.00037 29.0 7.2 55 38-98 3-57 (73)
200 KOG4570 Uncharacterized conser 72.8 22 0.00048 37.9 9.2 106 24-136 58-164 (418)
201 PRK15363 pathogenicity island 72.6 59 0.0013 31.3 11.5 91 34-135 39-131 (157)
202 PF11848 DUF3368: Domain of un 71.8 6.3 0.00014 29.9 3.8 32 624-655 13-44 (48)
203 COG3629 DnrI DNA-binding trans 70.2 22 0.00047 37.5 8.7 86 30-122 153-242 (280)
204 PF04840 Vps16_C: Vps16, C-ter 70.2 95 0.0021 33.4 13.9 104 2-132 184-287 (319)
205 PLN03098 LPA1 LOW PSII ACCUMUL 69.3 50 0.0011 37.0 11.6 63 29-98 74-140 (453)
206 KOG1125 TPR repeat-containing 68.7 60 0.0013 37.3 12.1 148 10-170 409-562 (579)
207 KOG1156 N-terminal acetyltrans 68.4 2.4E+02 0.0053 33.0 27.9 316 7-360 121-460 (700)
208 PF14812 PBP1_TM: Transmembran 66.7 2 4.3E-05 36.3 0.2 7 506-512 66-72 (81)
209 KOG2376 Signal recognition par 66.7 2.5E+02 0.0055 32.6 21.6 218 37-285 19-256 (652)
210 KOG2280 Vacuolar assembly/sort 66.5 37 0.0008 40.1 10.1 126 14-173 667-793 (829)
211 KOG1125 TPR repeat-containing 65.8 2.6E+02 0.0056 32.3 17.6 218 40-279 295-524 (579)
212 KOG1538 Uncharacterized conser 65.7 1.4E+02 0.003 35.0 14.1 254 27-336 553-848 (1081)
213 COG3629 DnrI DNA-binding trans 64.6 51 0.0011 34.7 10.1 63 67-135 153-215 (280)
214 PF10300 DUF3808: Protein of u 64.2 2.6E+02 0.0056 31.8 18.2 141 34-189 192-341 (468)
215 KOG4162 Predicted calmodulin-b 63.8 3.2E+02 0.0069 32.7 20.0 73 19-97 312-384 (799)
216 PRK15363 pathogenicity island 63.7 1E+02 0.0022 29.7 11.1 92 72-179 40-132 (157)
217 PF11848 DUF3368: Domain of un 63.2 14 0.0003 28.0 4.2 46 577-623 2-47 (48)
218 PF00637 Clathrin: Region in C 63.1 3.6 7.7E-05 38.1 1.2 84 1-96 13-96 (143)
219 KOG2796 Uncharacterized conser 62.2 2.1E+02 0.0046 30.1 14.9 131 34-180 181-316 (366)
220 KOG3060 Uncharacterized conser 61.9 1.9E+02 0.0041 30.2 13.1 118 7-135 64-182 (289)
221 PF07079 DUF1347: Protein of u 61.6 1.4E+02 0.0029 33.7 12.8 144 6-163 17-180 (549)
222 PF13428 TPR_14: Tetratricopep 61.1 15 0.00034 26.7 4.1 30 151-180 2-31 (44)
223 PF10602 RPN7: 26S proteasome 59.9 65 0.0014 31.4 9.4 102 30-135 36-141 (177)
224 KOG1824 TATA-binding protein-i 59.4 11 0.00025 45.2 4.6 77 340-419 231-318 (1233)
225 KOG0553 TPR repeat-containing 59.1 1.3E+02 0.0029 31.8 11.9 101 77-201 91-192 (304)
226 PF13525 YfiO: Outer membrane 57.9 2E+02 0.0043 28.4 17.1 168 77-272 15-197 (203)
227 PF08631 SPO22: Meiosis protei 57.5 2.4E+02 0.0053 29.3 23.9 162 6-181 4-188 (278)
228 KOG0548 Molecular co-chaperone 56.6 1.6E+02 0.0034 33.7 12.6 141 4-180 307-456 (539)
229 COG4235 Cytochrome c biogenesi 56.4 1.9E+02 0.0042 30.6 12.6 100 66-180 155-257 (287)
230 KOG1538 Uncharacterized conser 56.0 1.3E+02 0.0027 35.4 11.7 27 103-129 552-578 (1081)
231 COG2178 Predicted RNA-binding 55.9 81 0.0018 31.4 9.1 111 12-135 20-149 (204)
232 PF13762 MNE1: Mitochondrial s 55.8 90 0.002 29.6 9.1 93 101-202 31-126 (145)
233 KOG0553 TPR repeat-containing 54.8 1.6E+02 0.0036 31.2 11.7 98 5-115 91-190 (304)
234 KOG1999 RNA polymerase II tran 54.6 10 0.00022 45.5 3.2 28 548-575 163-194 (1024)
235 smart00843 Ftsk_gamma This dom 54.5 19 0.00042 29.0 3.8 21 629-649 33-53 (63)
236 PF13512 TPR_18: Tetratricopep 53.9 1.3E+02 0.0029 28.4 9.9 74 5-81 20-96 (142)
237 PF10366 Vps39_1: Vacuolar sor 53.3 37 0.00079 30.4 5.9 27 152-178 41-67 (108)
238 PF09397 Ftsk_gamma: Ftsk gamm 53.2 17 0.00036 29.6 3.3 22 629-650 34-55 (65)
239 PF04931 DNA_pol_phi: DNA poly 52.2 7.4 0.00016 47.1 1.7 7 514-520 743-749 (784)
240 KOG4648 Uncharacterized conser 51.5 45 0.00096 36.0 6.9 80 76-178 106-186 (536)
241 COG2178 Predicted RNA-binding 51.3 1.4E+02 0.003 29.8 9.8 128 86-240 19-149 (204)
242 KOG2796 Uncharacterized conser 51.0 1.7E+02 0.0037 30.8 10.8 125 8-140 190-319 (366)
243 PF13929 mRNA_stabil: mRNA sta 50.7 3.3E+02 0.0072 28.9 15.3 153 23-185 105-278 (292)
244 PF13176 TPR_7: Tetratricopept 50.3 27 0.00059 24.2 3.7 23 33-55 2-24 (36)
245 PF10300 DUF3808: Protein of u 50.1 4.3E+02 0.0093 30.0 18.9 200 71-331 162-373 (468)
246 KOG4570 Uncharacterized conser 49.9 1.1E+02 0.0025 32.7 9.5 84 8-98 77-163 (418)
247 COG1729 Uncharacterized protei 49.9 2.2E+02 0.0047 29.8 11.6 100 69-180 144-245 (262)
248 PF13281 DUF4071: Domain of un 49.8 3.9E+02 0.0085 29.4 15.5 165 3-180 149-335 (374)
249 KOG1832 HIV-1 Vpr-binding prot 49.4 6.8 0.00015 46.6 0.7 13 320-332 1255-1267(1516)
250 PF13176 TPR_7: Tetratricopept 49.3 29 0.00064 24.1 3.7 25 152-176 1-25 (36)
251 COG4700 Uncharacterized protei 49.0 2.9E+02 0.0063 27.7 14.0 106 63-180 85-190 (251)
252 PF13512 TPR_18: Tetratricopep 48.9 2.4E+02 0.0052 26.7 12.1 91 65-167 9-99 (142)
253 PF10446 DUF2457: Protein of u 47.6 5.1 0.00011 44.1 -0.6 15 627-641 383-397 (458)
254 COG4235 Cytochrome c biogenesi 47.6 3.7E+02 0.008 28.5 13.6 104 28-138 154-258 (287)
255 PLN02789 farnesyltranstransfer 47.5 3.9E+02 0.0084 28.7 23.5 132 32-181 39-173 (320)
256 PF00637 Clathrin: Region in C 47.5 4.2 9.1E-05 37.6 -1.2 89 35-137 12-100 (143)
257 PF13374 TPR_10: Tetratricopep 47.3 35 0.00077 23.6 4.0 27 31-57 3-29 (42)
258 cd01041 Rubrerythrin Rubreryth 47.1 35 0.00075 31.5 5.0 67 558-635 46-112 (134)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 46.8 81 0.0018 27.9 6.7 44 14-57 26-69 (103)
260 KOG1127 TPR repeat-containing 46.8 2E+02 0.0044 35.4 12.0 56 31-92 493-548 (1238)
261 PF02284 COX5A: Cytochrome c o 46.5 80 0.0017 28.2 6.7 40 18-57 33-72 (108)
262 PF13374 TPR_10: Tetratricopep 46.4 39 0.00084 23.4 4.1 27 152-178 4-30 (42)
263 PRK10635 bacterioferritin; Pro 46.0 21 0.00046 34.2 3.4 65 558-630 51-115 (158)
264 PF03066 Nucleoplasmin: Nucleo 46.0 4.8 0.0001 38.3 -1.0 8 402-409 95-102 (149)
265 KOG0548 Molecular co-chaperone 43.4 1.4E+02 0.003 34.1 9.6 103 39-160 11-114 (539)
266 PF02284 COX5A: Cytochrome c o 43.1 2.5E+02 0.0054 25.2 10.2 64 70-136 11-74 (108)
267 PRK10564 maltose regulon perip 42.2 31 0.00067 36.6 4.2 44 615-658 259-302 (303)
268 PF08631 SPO22: Meiosis protei 41.8 4.2E+02 0.0092 27.5 22.5 129 41-180 4-151 (278)
269 PF11207 DUF2989: Protein of u 41.3 2.1E+02 0.0046 28.7 9.6 75 47-127 123-198 (203)
270 KOG3060 Uncharacterized conser 40.7 4.5E+02 0.0098 27.5 15.9 151 7-176 24-180 (289)
271 COG3118 Thioredoxin domain-con 40.1 4.9E+02 0.011 27.8 16.2 145 116-307 143-287 (304)
272 PF13428 TPR_14: Tetratricopep 38.7 68 0.0015 23.2 4.5 29 109-137 3-31 (44)
273 PF11663 Toxin_YhaV: Toxin wit 38.1 24 0.00052 33.0 2.3 32 317-349 107-138 (140)
274 PF11207 DUF2989: Protein of u 37.2 2.3E+02 0.0049 28.5 9.1 74 12-89 123-197 (203)
275 COG4455 ImpE Protein of avirul 36.7 1.4E+02 0.0031 30.5 7.5 51 3-54 9-59 (273)
276 KOG0276 Vesicle coat complex C 36.0 2.8E+02 0.006 32.5 10.5 83 66-176 665-747 (794)
277 PF04097 Nic96: Nup93/Nic96; 35.2 4.5E+02 0.0098 31.0 12.8 88 4-98 267-355 (613)
278 cd01056 Euk_Ferritin eukaryoti 35.2 38 0.00083 32.3 3.3 68 558-631 50-117 (161)
279 cd00923 Cyt_c_Oxidase_Va Cytoc 35.1 2.2E+02 0.0048 25.2 7.5 48 86-135 23-70 (103)
280 PF09613 HrpB1_HrpK: Bacterial 34.8 3.8E+02 0.0082 25.9 9.9 51 42-98 22-72 (160)
281 COG4700 Uncharacterized protei 34.7 4.9E+02 0.011 26.1 16.4 138 24-178 83-225 (251)
282 PF10602 RPN7: 26S proteasome 34.6 4.4E+02 0.0095 25.6 11.8 63 108-176 37-99 (177)
283 PRK09249 coproporphyrinogen II 34.5 86 0.0019 35.4 6.6 85 573-657 110-223 (453)
284 KOG3871 Cell adhesion complex 34.5 24 0.00051 38.0 1.9 21 540-560 214-234 (449)
285 COG1729 Uncharacterized protei 32.8 6E+02 0.013 26.6 12.6 99 32-137 144-245 (262)
286 PF09205 DUF1955: Domain of un 32.6 4.4E+02 0.0095 25.0 12.5 64 109-181 88-151 (161)
287 KOG4555 TPR repeat-containing 32.4 4.4E+02 0.0095 24.9 9.6 94 39-139 52-147 (175)
288 KOG4162 Predicted calmodulin-b 32.1 9.8E+02 0.021 28.9 25.4 99 545-644 445-545 (799)
289 PF14669 Asp_Glu_race_2: Putat 32.0 5.4E+02 0.012 25.9 13.4 63 111-175 136-206 (233)
290 PF14689 SPOB_a: Sensor_kinase 31.9 54 0.0012 26.2 3.1 24 618-641 28-51 (62)
291 PF08311 Mad3_BUB1_I: Mad3/BUB 31.7 2.5E+02 0.0054 25.7 8.0 61 106-175 64-124 (126)
292 COG3947 Response regulator con 31.7 6.7E+02 0.015 26.9 14.1 151 11-177 149-340 (361)
293 KOG0624 dsRNA-activated protei 31.1 7.4E+02 0.016 27.2 24.3 207 40-281 116-335 (504)
294 TIGR01558 sm_term_P27 phage te 30.7 46 0.001 30.0 2.9 23 515-537 17-39 (116)
295 KOG1127 TPR repeat-containing 30.0 1E+03 0.022 29.9 14.1 123 46-179 474-625 (1238)
296 PRK05660 HemN family oxidoredu 29.9 1.1E+02 0.0025 33.5 6.4 85 573-657 66-179 (378)
297 PF04147 Nop14: Nop14-like fam 29.7 1.7E+02 0.0038 35.8 8.4 28 591-623 486-513 (840)
298 KOG1832 HIV-1 Vpr-binding prot 29.6 15 0.00033 43.8 -0.5 10 152-161 1014-1023(1516)
299 PF04184 ST7: ST7 protein; In 29.4 3E+02 0.0064 31.5 9.3 61 112-179 264-324 (539)
300 KOG3241 Uncharacterized conser 29.0 24 0.00052 34.2 0.7 12 263-274 72-83 (227)
301 PF11846 DUF3366: Domain of un 28.8 2.2E+02 0.0048 27.8 7.7 54 79-136 120-173 (193)
302 KOG2153 Protein involved in th 27.9 57 0.0012 37.9 3.5 108 460-589 184-310 (704)
303 KOG1189 Global transcriptional 27.5 29 0.00064 40.8 1.2 6 400-405 870-875 (960)
304 TIGR02508 type_III_yscG type I 27.4 4.6E+02 0.0099 23.6 8.5 88 10-112 20-107 (115)
305 PF10443 RNA12: RNA12 protein; 27.3 1.6E+02 0.0035 32.9 6.9 106 509-631 285-400 (431)
306 PF05944 Phage_term_smal: Phag 27.2 1.3E+02 0.0029 28.0 5.3 53 597-649 32-84 (132)
307 KOG0543 FKBP-type peptidyl-pro 26.7 7.5E+02 0.016 27.5 11.6 123 3-135 216-354 (397)
308 PF10366 Vps39_1: Vacuolar sor 26.4 1.5E+02 0.0033 26.5 5.4 25 33-57 42-66 (108)
309 PRK14956 DNA polymerase III su 26.3 3.9E+02 0.0084 30.6 9.8 86 522-647 196-282 (484)
310 PF11663 Toxin_YhaV: Toxin wit 26.3 64 0.0014 30.2 3.0 34 160-201 105-138 (140)
311 PF00356 LacI: Bacterial regul 26.1 49 0.0011 24.8 1.8 20 593-612 27-46 (46)
312 PF07721 TPR_4: Tetratricopept 25.9 1E+02 0.0022 19.7 3.1 23 152-174 3-25 (26)
313 PRK15331 chaperone protein Sic 25.7 4.6E+02 0.0099 25.5 8.8 87 40-136 47-134 (165)
314 KOG3130 Uncharacterized conser 25.6 32 0.0007 37.5 1.1 11 576-586 468-478 (514)
315 COG4003 Uncharacterized protei 25.6 92 0.002 26.5 3.5 31 607-643 31-61 (98)
316 KOG0543 FKBP-type peptidyl-pro 25.5 9.6E+02 0.021 26.7 13.2 127 38-179 216-355 (397)
317 PF04184 ST7: ST7 protein; In 25.4 7.3E+02 0.016 28.5 11.4 60 72-135 264-323 (539)
318 PRK08691 DNA polymerase III su 24.9 1.1E+03 0.024 28.4 13.4 92 86-181 180-276 (709)
319 PF09205 DUF1955: Domain of un 24.8 6E+02 0.013 24.1 14.3 124 6-139 13-152 (161)
320 smart00346 HTH_ICLR helix_turn 24.8 4E+02 0.0088 22.0 8.1 77 559-640 4-90 (91)
321 COG5108 RPO41 Mitochondrial DN 24.4 3.2E+02 0.007 32.3 8.5 50 112-167 33-82 (1117)
322 cd01671 CARD Caspase activatio 24.3 2.8E+02 0.006 22.6 6.4 45 510-573 13-57 (80)
323 PRK10304 ferritin; Provisional 24.3 78 0.0017 30.6 3.4 66 558-630 50-115 (165)
324 KOG4077 Cytochrome c oxidase, 24.0 1.3E+02 0.0028 28.0 4.4 47 556-605 65-111 (149)
325 PF13929 mRNA_stabil: mRNA sta 23.9 6.4E+02 0.014 26.8 10.2 119 8-131 141-262 (292)
326 KOG2114 Vacuolar assembly/sort 23.7 1.4E+03 0.031 28.0 14.9 54 114-176 404-457 (933)
327 PF12796 Ank_2: Ankyrin repeat 23.6 2.1E+02 0.0045 23.5 5.6 75 563-647 10-86 (89)
328 PF00515 TPR_1: Tetratricopept 23.4 2.1E+02 0.0045 18.9 4.6 29 108-136 2-30 (34)
329 TIGR02561 HrpB1_HrpK type III 23.2 5.4E+02 0.012 24.6 8.6 47 7-57 22-71 (153)
330 COG4105 ComL DNA uptake lipopr 23.0 8.7E+02 0.019 25.3 18.9 187 65-280 33-231 (254)
331 KOG0276 Vesicle coat complex C 22.9 1.1E+03 0.024 27.9 12.2 102 6-135 648-749 (794)
332 PF07163 Pex26: Pex26 protein; 22.6 8.3E+02 0.018 26.0 10.5 90 71-173 87-181 (309)
333 smart00572 DZF domain in DSRM 22.3 44 0.00096 34.5 1.3 74 590-668 169-242 (246)
334 KOG4521 Nuclear pore complex, 22.3 1.7E+03 0.037 28.4 20.6 88 534-642 1294-1399(1480)
335 PF09613 HrpB1_HrpK: Bacterial 22.3 7.2E+02 0.016 24.0 9.9 53 4-58 19-72 (160)
336 PF04889 Cwf_Cwc_15: Cwf15/Cwc 22.0 52 0.0011 34.0 1.7 6 310-315 37-42 (244)
337 KOG2041 WD40 repeat protein [G 21.8 1.4E+03 0.031 27.4 18.1 274 1-334 663-952 (1189)
338 KOG2610 Uncharacterized conser 21.1 1.1E+03 0.024 25.8 11.8 156 8-179 116-277 (491)
339 COG0457 NrfG FOG: TPR repeat [ 20.6 6.3E+02 0.014 22.7 19.1 159 4-180 68-232 (291)
340 TIGR03504 FimV_Cterm FimV C-te 20.4 1.6E+02 0.0034 21.9 3.6 25 156-180 5-29 (44)
341 KOG1920 IkappaB kinase complex 20.2 1.9E+03 0.04 28.1 18.8 69 159-234 860-930 (1265)
342 cd08819 CARD_MDA5_2 Caspase ac 20.1 5.8E+02 0.013 22.1 7.5 67 89-171 21-87 (88)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-50 Score=482.53 Aligned_cols=476 Identities=15% Similarity=0.163 Sum_probs=275.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+.+|++.|.++.|+.+|+.|.. ||..|||+||.+|++.|+++.|.++|++|. ..|+.||.++||+||.+|++.|
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~--~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ--EAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCc
Confidence 3445555555555555555542 555555555555555555555555555555 4555555555555555555555
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
++++|+++|++|.+ .|+.||.+||++||.+|++.|++++|.++|+.|.+.++.|+.. +||+||.+|+
T Consensus 487 ---~vd~A~~vf~eM~~--~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v--------TYnsLI~a~~ 553 (1060)
T PLN03218 487 ---KVDAMFEVFHEMVN--AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV--------VFNALISACG 553 (1060)
T ss_pred ---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHH
Confidence 45555555555555 4555555555555555555555555555555555555555544 5555555555
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH---------HHHHHHHHcCCCHHH-----HHHHHHcCCc
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI---------EPLQEEAELGYEIDY-----IARYISEGGL 227 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~---------~ll~~m~~~G~~pd~-----i~~~~~~~g~ 227 (670)
+.|++++|.++|++|...+..+.|+.+ +|+.++..|+ ++++.|.+.|+.|+. +...|++.|.
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~v----TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHI----TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 555555555555555442222244443 2444444333 244444444444332 2234455666
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccC
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIK 307 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~ 307 (670)
.++|..+|+.|...|+.||. ++|++|| ++|++.|++++|.++|++|...|+. |+..+|+.++..|.+
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~--~TynsLI----~a~~k~G~~eeA~~l~~eM~k~G~~----pd~~tynsLI~ay~k--- 696 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDE--VFFSALV----DVAGHAGDLDKAFEILQDARKQGIK----LGTVSYSSLMGACSN--- 696 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHh---
Confidence 66666666666666666665 6666555 5666666666666666666666666 566666666666654
Q ss_pred CCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhc
Q 005912 308 GPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRI 386 (670)
Q Consensus 308 ~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~ 386 (670)
.|.+++|.++|++|...|+ |+..|||+||.+|++.|++++|..+ ..-+...
T Consensus 697 ----------~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel------------------f~eM~~~ 748 (1060)
T PLN03218 697 ----------AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV------------------LSEMKRL 748 (1060)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH------------------HHHHHHc
Confidence 3336666666666666666 4446666666666666666666532 1112222
Q ss_pred ccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhh
Q 005912 387 KLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEA 466 (670)
Q Consensus 387 ~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (670)
... ++...|.. ++.+|...+.
T Consensus 749 Gi~-Pd~~Ty~s-LL~a~~k~G~--------------------------------------------------------- 769 (1060)
T PLN03218 749 GLC-PNTITYSI-LLVASERKDD--------------------------------------------------------- 769 (1060)
T ss_pred CCC-CCHHHHHH-HHHHHHHCCC---------------------------------------------------------
Confidence 222 24444442 3322211111
Q ss_pred cCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhh-
Q 005912 467 KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWERE- 544 (670)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 544 (670)
.....++|.+|.+.|+ +|+..+..+.+.|.-.+++-
T Consensus 770 ------------------------------------------le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 770 ------------------------------------------ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred ------------------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555666665 55555555444432111110
Q ss_pred -----------hccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCc
Q 005912 545 -----------ITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGS 613 (670)
Q Consensus 545 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (670)
...+.-..|. +.|+.++++|++.|..|+..+|+.+|.+.++....+-|.+++..+...|-.|..
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~-----~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWT-----SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred hhhhhhhhhhccccccccchH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 0011112333 349999999999999999999999997666877788888999999889999999
Q ss_pred ccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCch
Q 005912 614 PLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (670)
.+|..+|++|.+. ..+|..++..|...||.|.-+
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998443 258999999999999999876
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-49 Score=474.22 Aligned_cols=454 Identities=15% Similarity=0.204 Sum_probs=389.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
+++.|++.|++++|+++|++|...|+ .|+..+++.++.+|++.|.++.|..+|+.|. .||..|||+||++|++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHh
Confidence 36788999999999999999999996 5788999999999999999999999999999 5999999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
.| +.+.|+++|.+|.+ .|+.||..||++||.+|++.|+++.|.++|++|.+.|+.|++. |||+||++
T Consensus 450 ~g---~~e~A~~lf~~M~~--~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv--------TynaLI~g 516 (1060)
T PLN03218 450 SQ---DIDGALRVLRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH--------TFGALIDG 516 (1060)
T ss_pred Cc---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHH
Confidence 99 89999999999999 9999999999999999999999999999999999988888877 99999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
|++.|++++|.++|++|.+.|+ .|+.. +|+.++.++ ++.|.+++|..+|+.|.
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv--~PD~v----TYnsLI~a~---------------------~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNV--KPDRV----VFNALISAC---------------------GQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCC--CCCHH----HHHHHHHHH---------------------HHCCCHHHHHHHHHHHH
Confidence 9999999999999999999997 68876 499999888 77788999999999986
Q ss_pred c--CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccc
Q 005912 240 K--TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPK 317 (670)
Q Consensus 240 ~--~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~ 317 (670)
. .|+.||. ++|++|| .+|++.|++++|.++|+.|...|+. |+..+|+.++..|.+
T Consensus 570 ~~~~gi~PD~--vTynaLI----~ay~k~G~ldeA~elf~~M~e~gi~----p~~~tynsLI~ay~k------------- 626 (1060)
T PLN03218 570 AETHPIDPDH--ITVGALM----KACANAGQVDRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQ------------- 626 (1060)
T ss_pred HhcCCCCCcH--HHHHHHH----HHHHHCCCHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHh-------------
Confidence 5 6788887 8888887 8889999999999999999999888 788889998888875
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHH
Q 005912 318 AASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFW 396 (670)
Q Consensus 318 ~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w 396 (670)
.|.+++|.++|++|...|+ |+..||++|+.+|++.|++++|..+ ...+...... ++...|
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l------------------~~eM~k~G~~-pd~~ty 687 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI------------------LQDARKQGIK-LGTVSY 687 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH------------------HHHHHHcCCC-CCHHHH
Confidence 4558899999999999998 6668999999999999998888643 1112222222 244444
Q ss_pred HHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhh
Q 005912 397 KRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQ 476 (670)
Q Consensus 397 ~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (670)
.. ++.++...+
T Consensus 688 ns-LI~ay~k~G-------------------------------------------------------------------- 698 (1060)
T PLN03218 688 SS-LMGACSNAK-------------------------------------------------------------------- 698 (1060)
T ss_pred HH-HHHHHHhCC--------------------------------------------------------------------
Confidence 43 332221110
Q ss_pred hcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchh
Q 005912 477 LLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQ 555 (670)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (670)
+ .+...+.|++|++.|+ +|+..+..+.+.+. +
T Consensus 699 -----------------------------~--~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~----------------k 731 (1060)
T PLN03218 699 -----------------------------N--WKKALELYEDIKSIKLRPTVSTMNALITALC----------------E 731 (1060)
T ss_pred -----------------------------C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------H
Confidence 1 3456678889999888 88888888888883 3
Q ss_pred HHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhh---------
Q 005912 556 EWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDL--------- 626 (670)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 626 (670)
..+++.|++++++|.+.|..|+..+|++||.++++.+..+.+..++..+.+.|..|+..+|+.+|.+|.+.
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45666799999999999999999999999999999999999999999999999999999999999988641
Q ss_pred --------------chhHHHHHHHHHHHHhCCCCCchhHHHHhhhh
Q 005912 627 --------------GELDAAVAIVADMETTGIAVPDQTLDRVITSR 658 (670)
Q Consensus 627 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (670)
+-.+.|+.++..|.+.|+.|+..||..||...
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 12367999999999999999999999999553
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-48 Score=465.81 Aligned_cols=468 Identities=13% Similarity=0.094 Sum_probs=388.0
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------------------HHHHHHHHHcCC
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF-----------------------------------NHLLSCQATCGI 45 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-----------------------------------n~LI~~yak~G~ 45 (670)
||.+|++.|++++|+++|++|...|+.||.+|| |+||++|+++|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 589999999999999999999999998887776 677888999999
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~ 125 (670)
++.|..+|++|+ .||++|||+||.+|+++| +.++|+++|.+|.+ .|+.||.+||+++|.+|++.|+++.
T Consensus 238 ~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g---~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 238 VVSARLVFDRMP------RRDCISWNAMISGYFENG---ECLEGLELFFTMRE--LSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHHHhcCC------CCCcchhHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCChHH
Confidence 999999999999 799999999999999999 89999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHH
Q 005912 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 205 (670)
Q Consensus 126 A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll 205 (670)
|.++|..|.+.|+.+++. +||+||++|+++|++++|.++|++|...++ ++|++++.+|.-++..+.+.+++
T Consensus 307 a~~l~~~~~~~g~~~d~~--------~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~-~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVS--------VCNSLIQMYLSLGSWGEAEKVFSRMETKDA-VSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHHHHHHHHHhCCccchH--------HHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-eeHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988888777 999999999999999999999999988775 47888887777777788888899
Q ss_pred HHHHHcCCCHHH-----HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 206 QEEAELGYEIDY-----IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 206 ~~m~~~G~~pd~-----i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
.+|.+.|+.||. +...|++.|..+.+..++..|.+.|+.|+. ++||+|| ++|++.|++++|.++|++|.
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~--~~~n~Li----~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV--VVANALI----EMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch--HHHHHHH----HHHHHcCCHHHHHHHHHhCC
Confidence 999999999885 346788889999999999999999999988 8898888 89999999999999999986
Q ss_pred HCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhh
Q 005912 281 NEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 281 ~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
.. +..+|+.++..+.+ .|..++|..+|++|.. ++ |+..||+++|.+|++.|.++.+.
T Consensus 452 ~~--------d~vs~~~mi~~~~~-------------~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 452 EK--------DVISWTSIIAGLRL-------------NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred CC--------CeeeHHHHHHHHHH-------------CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 53 44567788877764 5568999999999986 57 66699999999999999998876
Q ss_pred cCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchh
Q 005912 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEE 439 (670)
Q Consensus 360 ~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (670)
.+ ...+.+..+.. +.....
T Consensus 510 ~i------------------~~~~~~~g~~~-~~~~~n------------------------------------------ 528 (857)
T PLN03077 510 EI------------------HAHVLRTGIGF-DGFLPN------------------------------------------ 528 (857)
T ss_pred HH------------------HHHHHHhCCCc-cceech------------------------------------------
Confidence 43 22222222221 111000
Q ss_pred hhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHh
Q 005912 440 ADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEM 519 (670)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (670)
+ .+.+.-|. . + .+...+.|++|
T Consensus 529 -------------------------------------a------Li~~y~k~----G---------~--~~~A~~~f~~~ 550 (857)
T PLN03077 529 -------------------------------------A------LLDLYVRC----G---------R--MNYAWNQFNSH 550 (857)
T ss_pred -------------------------------------H------HHHHHHHc----C---------C--HHHHHHHHHhc
Confidence 0 01111111 0 0 12334455555
Q ss_pred hhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHH
Q 005912 520 RKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLK 599 (670)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (670)
..|+..+.++..+++ +..+.+.|++++++|++.|..|+..+|+++|.|+.+.++++.+.+
T Consensus 551 ----~~d~~s~n~lI~~~~----------------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 551 ----EKDVVSWNILLTGYV----------------AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred ----CCChhhHHHHHHHHH----------------HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 357777777777763 445566699999999999999999999999999999999999999
Q ss_pred HHHHhh-hcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCchhHHHHhhhh
Q 005912 600 ILQKTH-SLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSR 658 (670)
Q Consensus 600 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (670)
+++.|. ..|..|+..+|..+|+++++.|.+++|..++..| ++.|+..++..+|++-
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 999998 7899999999999999999999999999998877 5889999999888873
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-48 Score=465.40 Aligned_cols=525 Identities=13% Similarity=0.096 Sum_probs=351.6
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------------------HHHHHHHHHcCC
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF-----------------------------------NHLLSCQATCGI 45 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-----------------------------------n~LI~~yak~G~ 45 (670)
+|.+|++.|++++|+.+|+.|.+.|+.|+..+| |+||++|+++|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 477889999999999999999888877776665 888889999999
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~ 125 (670)
++.|+.+|++|+ .||+++||+||.+|++.| +.++|+++|.+|.. .|+.||.+||+++|.+|++.+++..
T Consensus 137 ~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g---~~~~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 137 LVHAWYVFGKMP------ERDLFSWNVLVGGYAKAG---YFDEALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred hHHHHHHHhcCC------CCCeeEHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhh
Confidence 999999999999 799999999999999999 89999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHH
Q 005912 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 205 (670)
Q Consensus 126 A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll 205 (670)
+.++|..|.+.|+.+++. +||+||++|+++|++++|..+|++|...++ ++|++++.+|.-++....+.+++
T Consensus 206 ~~~~~~~~~~~g~~~~~~--------~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 206 GREVHAHVVRFGFELDVD--------VVNALITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHHHHHcCCCcccc--------hHhHHHHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988877665 566666666666666666666666655543 34555554444444445555556
Q ss_pred HHHHHcCCCHHHHH-----HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 206 QEEAELGYEIDYIA-----RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 206 ~~m~~~G~~pd~i~-----~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
.+|.+.|+.||.++ ..|+..|..+.+..++..|.+.|+.||. ++||+|| .+|++.|++++|.++|++|.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~--~~~n~Li----~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV--SVCNSLI----QMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch--HHHHHHH----HHHHhcCCHHHHHHHHhhCC
Confidence 66666666655432 3455555556666666666555555555 5555555 55555555555555555554
Q ss_pred HCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhh
Q 005912 281 NEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 281 ~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
. ++..+|+.++..+.+ .|..++|.++|++|.+.|+ |+..||++++.+|++.|++++|.
T Consensus 351 ~--------~d~~s~n~li~~~~~-------------~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 351 T--------KDAVSWTAMISGYEK-------------NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred C--------CCeeeHHHHHHHHHh-------------CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 2 233344444444432 2234444444444444444 33344444444444444444444
Q ss_pred cCCCCC------CCcchhhhhhh--------HHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccC
Q 005912 360 GRPLWV------PPVEEEEEEVD--------EEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLD 425 (670)
Q Consensus 360 ~~~~~~------p~~e~~~~~vd--------eE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~ 425 (670)
.++..+ |....+...++ +++.++..+|+. ++...|...+.+-+.++...++.
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~------------ 475 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEAL------------ 475 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHH------------
Confidence 332111 11111111111 334444455542 25556765333444333221000
Q ss_pred cCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCC
Q 005912 426 DDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDE 505 (670)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (670)
+.-+.+. +.-+|....-..+| .++-+. +
T Consensus 476 -------------------------------~lf~~m~-~~~~pd~~t~~~lL-------~a~~~~-------------g 503 (857)
T PLN03077 476 -------------------------------IFFRQML-LTLKPNSVTLIAAL-------SACARI-------------G 503 (857)
T ss_pred -------------------------------HHHHHHH-hCCCCCHhHHHHHH-------HHHhhh-------------c
Confidence 0000000 01222222222221 122211 0
Q ss_pred CCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHH
Q 005912 506 DWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVI 584 (670)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (670)
+ .....+.+..|.+.|+ +|+.....+-|.+. ..+ .++.|.+++..+ .|++.+|++|
T Consensus 504 ~--l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~--------------k~G--~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 504 A--LMCGKEIHAHVLRTGIGFDGFLPNALLDLYV--------------RCG--RMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred h--HHHhHHHHHHHHHhCCCccceechHHHHHHH--------------HcC--CHHHHHHHHHhc-----CCChhhHHHH
Confidence 1 2445678888899998 88888888888872 233 455599999886 8999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHH-HhCCCCCchhHHHHhhhhccC
Q 005912 585 IRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADME-TTGIAVPDQTLDRVITSRQTG 661 (670)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 661 (670)
|.++++.+.++.++.+++.|...|..|+..+|..+|.+|+..|.+++|..++..|. ..||.|.-+||.-+|..--+.
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999 789999999999988874443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=448.20 Aligned_cols=425 Identities=13% Similarity=0.120 Sum_probs=355.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.+|++.++++.|..++..|...|+.||..+||+||++|+++|+++.|.++|++|+ .||.+|||+||.+|++.
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP------ERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC------CCCeeeHHHHHHHHHHC
Confidence 467888888888899999999989999999999999999999999999999999998 68999999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+++|.+|.+ .|+.||..||+++|.+|++.|.+..+.++|..+.+.|+.+++. +||+||++|
T Consensus 203 g---~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--------~~n~Li~~y 269 (697)
T PLN03081 203 G---NYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--------VSCALIDMY 269 (697)
T ss_pred c---CHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce--------eHHHHHHHH
Confidence 9 78899999999998 8999999999999999999999999999999999988777766 899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHcCCcHHHHHHHH
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA-----RYISEGGLTGERKRWV 235 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~-----~~~~~~g~~~~a~~lf 235 (670)
+++|++++|.++|++|..+++ +.|++++.+|..++..+.+.+++.+|.+.|+.||..+ ..|++.|.++.|..++
T Consensus 270 ~k~g~~~~A~~vf~~m~~~~~-vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPEKTT-VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999999987765 4677777666666667777778888888888887544 5677888888888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLK 315 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~ 315 (670)
..|.+.|+.|+. ++||+|| ++|++.|++++|.++|++|.. ++..+|+.++..|.+
T Consensus 349 ~~m~~~g~~~d~--~~~~~Li----~~y~k~G~~~~A~~vf~~m~~--------~d~~t~n~lI~~y~~----------- 403 (697)
T PLN03081 349 AGLIRTGFPLDI--VANTALV----DLYSKWGRMEDARNVFDRMPR--------KNLISWNALIAGYGN----------- 403 (697)
T ss_pred HHHHHhCCCCCe--eehHHHH----HHHHHCCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHH-----------
Confidence 888888888887 8888777 888888888888888888853 355577777777764
Q ss_pred cccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHh
Q 005912 316 PKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 394 (670)
Q Consensus 316 ~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~ 394 (670)
+|..++|.++|++|...|+ |+..||++||++|++.|++++|..
T Consensus 404 --~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~---------------------------------- 447 (697)
T PLN03081 404 --HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE---------------------------------- 447 (697)
T ss_pred --cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH----------------------------------
Confidence 5668888888888888888 666888888888888888876642
Q ss_pred HHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHH
Q 005912 395 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIG 474 (670)
Q Consensus 395 ~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (670)
T Consensus 448 -------------------------------------------------------------------------------- 447 (697)
T PLN03081 448 -------------------------------------------------------------------------------- 447 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhh-ccC-CcchhhHHHHHHhcchhhhhhccCCCCC
Q 005912 475 VQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRK-RKV-FDVSDMYTIADAWGWTWEREITNRPPQK 552 (670)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (670)
.|+.|.+ .|+ +|+.-+..+.|+.|
T Consensus 448 ----------------------------------------~f~~m~~~~g~~p~~~~y~~li~~l~-------------- 473 (697)
T PLN03081 448 ----------------------------------------IFQSMSENHRIKPRAMHYACMIELLG-------------- 473 (697)
T ss_pred ----------------------------------------HHHHHHHhcCCCCCccchHhHHHHHH--------------
Confidence 2333332 244 56666777777775
Q ss_pred chhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccC-cccHHHHHHHHhhhchhHH
Q 005912 553 WSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFG-SPLYDEIISLCLDLGELDA 631 (670)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 631 (670)
+...++.|.+++++| +..|+..+|++||.|+.+....+.+..+++++. +..|. ...|..++..|++.|+|++
T Consensus 474 --r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 474 --REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred --hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHH
Confidence 233466699998875 899999999999999999999999999998885 55675 5699999999999999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 005912 632 AVAIVADMETTGIAVP 647 (670)
Q Consensus 632 ~~~~~~~~~~~~~~~~ 647 (670)
|..++..|++.|+..+
T Consensus 547 A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 547 AAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHcCCccC
Confidence 9999999999999754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=422.60 Aligned_cols=440 Identities=14% Similarity=0.136 Sum_probs=380.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
+|.+|++.|++++|+++|+.|...+ +.||..||++|+.+|++.++++.|..++..|. ..|+.||..+||+||.+|++
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~--~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE--SSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCcchHHHHHHHHHHhc
Confidence 4788999999999999999998764 78999999999999999999999999999999 78999999999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
.| ++++|.++|++|.+ ||.+||+++|.+|++.|++++|.++|++|.+.|+.|+.. ||+++|.+
T Consensus 171 ~g---~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~--------t~~~ll~a 233 (697)
T PLN03081 171 CG---MLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR--------TFVVMLRA 233 (697)
T ss_pred CC---CHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh--------hHHHHHHH
Confidence 99 89999999999964 899999999999999999999999999999988777666 99999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
|++.|..+.+.+++..|.+.|+ .++.. +|+.+++.+ ++.|.+++|..+|+.|.
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~--~~d~~----~~n~Li~~y---------------------~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGV--VGDTF----VSCALIDMY---------------------SKCGDIEDARCVFDGMP 286 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCC--Cccce----eHHHHHHHH---------------------HHCCCHHHHHHHHHhCC
Confidence 9999999999999999999997 56665 388888777 88899999999999996
Q ss_pred cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccC
Q 005912 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA 319 (670)
Q Consensus 240 ~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g 319 (670)
. +|. ++||+|| .+|+++|+.++|+++|++|...|+. |+..+|+.++.+|.+.+
T Consensus 287 ~----~~~--vt~n~li----~~y~~~g~~~eA~~lf~~M~~~g~~----pd~~t~~~ll~a~~~~g------------- 339 (697)
T PLN03081 287 E----KTT--VAWNSML----AGYALHGYSEEALCLYYEMRDSGVS----IDQFTFSIMIRIFSRLA------------- 339 (697)
T ss_pred C----CCh--hHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcc-------------
Confidence 4 344 9999988 8999999999999999999999999 89999999999998654
Q ss_pred CHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHH
Q 005912 320 SKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKR 398 (670)
Q Consensus 320 ~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~ 398 (670)
.+++|.+++..|.+.|++++ .+||+|+.+|++.|++++|..++.. |. .++...|-.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~---------------------m~--~~d~~t~n~ 396 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR---------------------MP--RKNLISWNA 396 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh---------------------CC--CCCeeeHHH
Confidence 48999999999999999555 8999999999999999998765433 22 135566775
Q ss_pred hhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhc
Q 005912 399 RFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLL 478 (670)
Q Consensus 399 ~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (670)
++.++..++.
T Consensus 397 -lI~~y~~~G~--------------------------------------------------------------------- 406 (697)
T PLN03081 397 -LIAGYGNHGR--------------------------------------------------------------------- 406 (697)
T ss_pred -HHHHHHHcCC---------------------------------------------------------------------
Confidence 3333322211
Q ss_pred ccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchhHH
Q 005912 479 KDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQEW 557 (670)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (670)
+....++|++|.+.|+ +|..-+..+..+|. . ..
T Consensus 407 ------------------------------~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~--------------~--~g 440 (697)
T PLN03081 407 ------------------------------GTKAVEMFERMIAEGVAPNHVTFLAVLSACR--------------Y--SG 440 (697)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh--------------c--CC
Confidence 3557789999999999 99999999999993 3 34
Q ss_pred HHHHHHHHHHHHHH-cCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHH
Q 005912 558 EVELAIQIMLKVIE-LGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIV 636 (670)
Q Consensus 558 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (670)
.++.|.++++.|.+ .|..|++.+|+.||.+++|++..+.+..+++. .+..|+..+|..+|.+|...|+++.|..+.
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 56669999999985 79999999999999999999999999999875 489999999999999999999999999999
Q ss_pred HHHHHhCCCCCc-hhHHHHhhh
Q 005912 637 ADMETTGIAVPD-QTLDRVITS 657 (670)
Q Consensus 637 ~~~~~~~~~~~~-~~~~~~~~~ 657 (670)
..|. ++.|.+ .+|.-++..
T Consensus 518 ~~l~--~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 518 EKLY--GMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHh--CCCCCCCcchHHHHHH
Confidence 8885 566653 466655543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.70 E-value=3.4e-13 Score=160.24 Aligned_cols=486 Identities=11% Similarity=0.021 Sum_probs=303.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|..+....-. +......++..|.+.|++++|..+++.+. ....++..+|+.+...|.+.|
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~- 479 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLE---KKQPDNASLHNLLGAIYLGKG- 479 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHhCC-
Confidence 4567888999999999888765322 33455667888889999999999999887 233457788899999999998
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.++.. .. ..+...+..+...+...|++++|.++|..+...... +.. +++.+...|.+
T Consensus 480 --~~~~A~~~~~~a~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--------~~~~l~~~~~~ 545 (899)
T TIGR02917 480 --DLAKAREAFEKALS--IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLR--------AILALAGLYLR 545 (899)
T ss_pred --CHHHHHHHHHHHHh--hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHH--------HHHHHHHHHHH
Confidence 78889999988876 21 234566777888888999999999999988775422 122 78888888889
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHH---HHhHHHHHHHHHHHHHHHHHHcCC-CHHH---HHHHHHcCCcHHHHHHHH
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMI---LSRKYRTLVSSWIEPLQEEAELGY-EIDY---IARYISEGGLTGERKRWV 235 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i---~~~ty~~ll~a~~~ll~~m~~~G~-~pd~---i~~~~~~~g~~~~a~~lf 235 (670)
.|+.++|..+|+.+.+.+.. ...... ..+...+-...+...+..+..... .+.. +...+...|..++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888766521 111100 001111112333344555544322 2222 234566777888888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLK 315 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~ 315 (670)
+.+.... |+. ...+.. +...|.+.|+.++|..+|+.+....-. +...+..+...+.
T Consensus 625 ~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~------------ 680 (899)
T TIGR02917 625 KKLLALQ--PDS-ALALLL----LADAYAVMKNYAKAITSLKRALELKPD-----NTEAQIGLAQLLL------------ 680 (899)
T ss_pred HHHHHhC--CCC-hHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHH------------
Confidence 8876532 321 133333 347778888888888888887754322 3344444444443
Q ss_pred cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhH
Q 005912 316 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEF 395 (670)
Q Consensus 316 ~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~ 395 (670)
..|++++|..+++.+...+......+..+...+...|++++|...+ ...+.. .+.+ ..
T Consensus 681 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~-----------------~~~~~~---~~~~-~~ 738 (899)
T TIGR02917 681 -AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY-----------------RKALKR---APSS-QN 738 (899)
T ss_pred -HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH-----------------HHHHhh---CCCc-hH
Confidence 4566888889999888877544467777888888888888886542 222221 1111 22
Q ss_pred HHHhhhcc-CcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHH
Q 005912 396 WKRRFLGE-GLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIG 474 (670)
Q Consensus 396 w~~~llg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (670)
+.. +... ...+... +..+.. ....+ ..|....+
T Consensus 739 ~~~-l~~~~~~~g~~~----------------------------~A~~~~-~~~l~----------------~~~~~~~~ 772 (899)
T TIGR02917 739 AIK-LHRALLASGNTA----------------------------EAVKTL-EAWLK----------------THPNDAVL 772 (899)
T ss_pred HHH-HHHHHHHCCCHH----------------------------HHHHHH-HHHHH----------------hCCCCHHH
Confidence 211 0000 0000000 000000 00000 00000000
Q ss_pred hhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCch
Q 005912 475 VQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWS 554 (670)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (670)
...+ .....+. ++ +....+.|+.+.+..+.+...++.++.++. -.
T Consensus 773 ~~~l------a~~~~~~-------------g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--------------~~ 817 (899)
T TIGR02917 773 RTAL------AELYLAQ-------------KD--YDKAIKHYRTVVKKAPDNAVVLNNLAWLYL--------------EL 817 (899)
T ss_pred HHHH------HHHHHHC-------------cC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------hc
Confidence 0000 0000000 01 355777888888888777777888877762 12
Q ss_pred hHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHH
Q 005912 555 QEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVA 634 (670)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (670)
.. ..|+.++.+.+++... +...+..+-....+...++.++++++++.+++-. ...+|..+..++.+.|++++|+.
T Consensus 818 ~~---~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD---PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc---HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 22 2399999999876422 1223344555566889999999999999999865 78899999999999999999999
Q ss_pred HHHHHH
Q 005912 635 IVADME 640 (670)
Q Consensus 635 ~~~~~~ 640 (670)
++.+|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.66 E-value=6.9e-12 Score=149.08 Aligned_cols=308 Identities=10% Similarity=-0.008 Sum_probs=207.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...+.+.|++++|+.++..+.... ..+...++.+...|.+.|++++|..+|+++.. .. ..+...|..+...+...|
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATE--LD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHhCC
Confidence 356788999999999999998653 44678899999999999999999999999872 21 336778888889999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|++.|..+.. ... .+......++..|.+.|++++|..++..+...... + +.+|+.+...|.
T Consensus 412 ---~~~~A~~~~~~a~~--~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------~~~~~~l~~~~~ 476 (899)
T TIGR02917 412 ---DPSEAIADLETAAQ--LDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-N--------ASLHNLLGAIYL 476 (899)
T ss_pred ---ChHHHHHHHHHHHh--hCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C--------cHHHHHHHHHHH
Confidence 78899999999876 322 12345667888999999999999999999875322 2 227999999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH---------HHHHHHHHHHHHHcCCC-HH---HHHHHHHcCCcH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL---------VSSWIEPLQEEAELGYE-ID---YIARYISEGGLT 228 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l---------l~a~~~ll~~m~~~G~~-pd---~i~~~~~~~g~~ 228 (670)
+.|++++|...|+++.+.+. +... .+..+ ...+...+..+....-. +. .+...+...|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~----~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP----DFFP---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC----CcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999877542 2111 12222 23333445544443221 11 122345556677
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
+++..+|..+.... |+. ...+.. +...|.+.|+.++|..+++.+..... .+...+..+...+.
T Consensus 550 ~~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~----- 612 (899)
T TIGR02917 550 EEAVAWLEKAAELN--PQE-IEPALA----LAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWLMLGRAQL----- 612 (899)
T ss_pred HHHHHHHHHHHHhC--ccc-hhHHHH----HHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHH-----
Confidence 77777777765432 221 122222 33667777777777777777765432 13333444333333
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|.+++|...|+.+....-.+...+..+...+...|++++|..
T Consensus 613 --------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 613 --------AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred --------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34557777777777766543233566677777777777777653
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=2.3e-11 Score=132.69 Aligned_cols=288 Identities=13% Similarity=0.031 Sum_probs=204.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC---HHHHHHHHHHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD---TETYNCVIQAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd---~~tyn~LI~ay~k~g 81 (670)
+...|++++|+..|.++.+.+ ..+..++..+...|.+.|++++|..+|+.+. ..+..++ ..+|+.+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 457799999999999999863 2356689999999999999999999999998 4332221 367899999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+.+|.++.+ . -.++..++..+...|.+.|++++|.+++..+.+.+..+... .....|..+...|.
T Consensus 122 ---~~~~A~~~~~~~l~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~ 191 (389)
T PRK11788 122 ---LLDRAEELFLQLVD--E-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQAL 191 (389)
T ss_pred ---CHHHHHHHHHHHHc--C-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHH
Confidence 78899999999986 3 23567899999999999999999999999998754322110 00014667888899
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|..+|+++.+.. |+... .+..+.. .+...|..++|..+|+.+...
T Consensus 192 ~~~~~~~A~~~~~~al~~~----p~~~~---~~~~la~---------------------~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD----PQCVR---ASILLGD---------------------LALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC----cCCHH---HHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999997754 22211 1222222 235667888888888887653
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCH
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASK 321 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~ 321 (670)
. |+....+++.+ ...|++.|+.++|..+|+.+.... |+...+..+...+. +.|..
T Consensus 244 ~--p~~~~~~~~~l----~~~~~~~g~~~~A~~~l~~~~~~~------p~~~~~~~la~~~~-------------~~g~~ 298 (389)
T PRK11788 244 D--PEYLSEVLPKL----MECYQALGDEAEGLEFLRRALEEY------PGADLLLALAQLLE-------------EQEGP 298 (389)
T ss_pred C--hhhHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHH-------------HhCCH
Confidence 2 33211334433 377888888888888888887653 33333333333333 45568
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---hCChhhhh
Q 005912 322 MVVSELKEELDAQGLPTDGTRNVLYQRVQK---ARRINRSR 359 (670)
Q Consensus 322 ~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~---aG~~~eA~ 359 (670)
++|..+++++.+. .|+..+++.++..++. .|+..++.
T Consensus 299 ~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 299 EAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 8888888887765 4777788877777665 33555554
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=5.7e-11 Score=125.48 Aligned_cols=465 Identities=14% Similarity=0.118 Sum_probs=282.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChH-HHHHHHHHchh-C----------------CCCCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA--TCGIPE-VAFATFENMEY-G----------------EDYMK 64 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya--k~G~~e-~A~~lf~~M~~-~----------------~~gi~ 64 (670)
+...|.+.++.-+++.|+..|+..+...--.|+..-+ ...++- .-++-|-.|.. | ..-..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4557888999999999999998887776666655432 111111 11122222221 0 00013
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
....||.+||.|+|+-. ..+.|.++|.+-.+ ...+.+..+||.+|.+-+- -.+..+..+|......|++.
T Consensus 205 KT~et~s~mI~Gl~K~~---~~ERA~~L~kE~~~--~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~- 274 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFS---SLERARELYKEHRA--AKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLF- 274 (625)
T ss_pred CCchhHHHHHHHHHHHH---hHHHHHHHHHHHHH--hhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchH-
Confidence 56789999999999998 89999999999998 8889999999999987653 33488999999988888877
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHH----HHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIE----LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~ee----A~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
|+|+++++.++.|+++. |++++.+|++-|+ .|..- +|+-++...
T Consensus 275 -------TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV--ePsLs----Syh~iik~f------------------- 322 (625)
T KOG4422|consen 275 -------TFNALLSCAAKFGKFEDARKAALQILGEMKEIGV--EPSLS----SYHLIIKNF------------------- 322 (625)
T ss_pred -------hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--Ccchh----hHHHHHHHh-------------------
Confidence 99999999999998875 5678889999998 56543 366655532
Q ss_pred HHHcCCcHHHHHHHHHHhc----cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccCC-CCHHH
Q 005912 221 YISEGGLTGERKRWVPRRG----KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE-GPAVLGD-VSESD 294 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~----~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~-gv~~~g~-~~~~~ 294 (670)
|..++..+-+..|...+. -+.++|-. -+.|-....-+.-+.+..+.+.|.++-.-+... +....|. -....
T Consensus 323 -~re~dp~k~as~~i~dI~N~ltGK~fkp~~--p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 323 -KRESDPQKVASSWINDIQNSLTGKTFKPIT--PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred -cccCCchhhhHHHHHHHHHhhccCcccCCC--CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 344555555555554442 22233322 223322222335556777888888886665432 2221111 11122
Q ss_pred HHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchh-h
Q 005912 295 YVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-E 372 (670)
Q Consensus 295 ~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~-~ 372 (670)
|.+ .|-.++|+..+.+....+|+.|.-.-+ |+..+...++++...+|+++--..+...+-.-.|. .
T Consensus 400 Yyr------------~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 400 YYR------------KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 222 223344677778899999999998877 88899999999999999876433221111111111 2
Q ss_pred hhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCC
Q 005912 373 EEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPE 452 (670)
Q Consensus 373 ~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (670)
..+.+|+..++.+.+.++-..+ .+.-
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~---------------------------------------------------r~Ql--- 493 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPE---------------------------------------------------REQL--- 493 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChH---------------------------------------------------HHHH---
Confidence 2333455555544444431110 0000
Q ss_pred cchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHH
Q 005912 453 SQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYT 532 (670)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (670)
+++..-|.+ |.. +-..+..+.||.+. |..+....
T Consensus 494 ----------------~~~~ak~aa--d~~---------------------------e~~e~~~~R~r~~~-~~~t~l~~ 527 (625)
T KOG4422|consen 494 ----------------QVAFAKCAA--DIK---------------------------EAYESQPIRQRAQD-WPATSLNC 527 (625)
T ss_pred ----------------HHHHHHHHH--HHH---------------------------HHHHhhHHHHHhcc-CChhHHHH
Confidence 000000000 000 00111223344333 45555555
Q ss_pred HHHHhcchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCcc
Q 005912 533 IADAWGWTWEREITNRPPQKWSQEWEVELAIQIM-LKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVF 611 (670)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (670)
||--.- + --....-||+ +.|+ .+=-+.-++|...-.+-++.+|-+..-|+++...||.+-.-....
T Consensus 528 ia~Ll~-------R---~G~~qkA~e~---l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 528 IAILLL-------R---AGRTQKAWEM---LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHH-------H---cchHHHHHHH---HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 554330 0 0022223554 4444 333477789999999999999999999999999999996655555
Q ss_pred CcccHHHHHHHHhhhchhHHHHHHHHHH
Q 005912 612 GSPLYDEIISLCLDLGELDAAVAIVADM 639 (670)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (670)
-.+|-..+..-|.=..+-.+|+.=+..|
T Consensus 595 ~E~La~RI~e~f~iNqeq~~~ls~l~~L 622 (625)
T KOG4422|consen 595 CEGLAQRIMEDFAINQEQKEALSNLTAL 622 (625)
T ss_pred hhHHHHHHHHhcCcCHHHHHHHhhhhhh
Confidence 5566677777777766666666554443
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.49 E-value=2.2e-11 Score=132.83 Aligned_cols=283 Identities=13% Similarity=0.074 Sum_probs=211.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMAT---TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 78 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd---~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~ 78 (670)
...|.+.|++++|..+++.+...+..++ ...++.|...|.+.|+++.|..+|+++. .. -.++..+|+.++..|.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l--~~-~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV--DE-GDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--cC-CcchHHHHHHHHHHHH
Confidence 3567899999999999999987643332 3568899999999999999999999998 32 2457889999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.| +.++|+++|..+.. .+..++ ...|..+...+.+.|++++|..+|.++.+.... ... ++.
T Consensus 153 ~~g---~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~--------~~~ 218 (389)
T PRK11788 153 QEK---DWQKAIDVAERLEK--LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVR--------ASI 218 (389)
T ss_pred Hhc---hHHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHH--------HHH
Confidence 999 88899999999987 433332 224566777889999999999999999874321 111 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 155 LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 155 ~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
.+...|.+.|++++|..+|+++.+.+ |+... ..+..+.. .+...|..++|..+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~--~~~~~l~~---------------------~~~~~g~~~~A~~~ 271 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQD----PEYLS--EVLPKLME---------------------CYQALGDEAEGLEF 271 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC----hhhHH--HHHHHHHH---------------------HHHHcCCHHHHHHH
Confidence 89999999999999999999998754 22110 11333333 23677899999999
Q ss_pred HHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccc
Q 005912 235 VPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVL 314 (670)
Q Consensus 235 f~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L 314 (670)
++.+... .|+. ..+.. +...+.+.|+.++|..+|..+... . |+...+..++..+....
T Consensus 272 l~~~~~~--~p~~--~~~~~----la~~~~~~g~~~~A~~~l~~~l~~--~----P~~~~~~~l~~~~~~~~-------- 329 (389)
T PRK11788 272 LRRALEE--YPGA--DLLLA----LAQLLEEQEGPEAAQALLREQLRR--H----PSLRGFHRLLDYHLAEA-------- 329 (389)
T ss_pred HHHHHHh--CCCc--hHHHH----HHHHHHHhCCHHHHHHHHHHHHHh--C----cCHHHHHHHHHHhhhcc--------
Confidence 9998764 3655 44433 448899999999999999998765 3 66777777665554321
Q ss_pred ccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhh
Q 005912 315 KPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINR 357 (670)
Q Consensus 315 ~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~e 357 (670)
.+|...++..+++.|.+.++.++.-| .|.++|.+.+
T Consensus 330 --~~g~~~~a~~~~~~~~~~~~~~~p~~-----~c~~cg~~~~ 365 (389)
T PRK11788 330 --EEGRAKESLLLLRDLVGEQLKRKPRY-----RCRNCGFTAR 365 (389)
T ss_pred --CCccchhHHHHHHHHHHHHHhCCCCE-----ECCCCCCCCc
Confidence 24578889999999999998333223 3667776644
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.8e-12 Score=96.85 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak 119 (670)
||++|||+||++|++.| +.++|+++|++|.+ .|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~---~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAG---KFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCc---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666 56666666666666 6666666666666666653
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.3e-09 Score=115.35 Aligned_cols=317 Identities=15% Similarity=0.141 Sum_probs=209.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.|+|+-...++|.+++++-.+...+.+..+||.||.+-.-.- -.++..+|. +..+.||..|+|+++++.++.
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi--sqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMI--SQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHH--HhhcCCchHhHHHHHHHHHHh
Confidence 68999999999999999999999888999999999997644222 277889999 788999999999999999999
Q ss_pred CCccc-HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHccCCCcccccCCCCch---HHHH
Q 005912 81 ESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE-AIRHFRALQNYEGGTKVLHNEGNFGD---PLSL 155 (670)
Q Consensus 81 g~~~~-~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~-A~~lf~~M~~~g~~~~v~~~~g~~pd---tyn~ 155 (670)
|+++. ...|++++.+|++ -|+.|...+|..+|.-+++-++..+ +..+...+...-.+-.. .-+.|+ -|-+
T Consensus 287 g~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f---kp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF---KPITPTDNKFFQS 361 (625)
T ss_pred cchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc---cCCCCchhHHHHH
Confidence 97754 4457899999999 9999999999999999999888754 44455555432111100 011122 5667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCC--CCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQ--PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi--~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
-++.|.+..+.+-|.+|-.-+....- .+.|+ .-.++-|..+.... +.....+.-..
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~-~~~~fYyr~~~~li---------------------cq~es~~~~~~ 419 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD-QHRNFYYRKFFDLI---------------------CQMESIDVTLK 419 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH-HHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 77888888999999988776654321 12222 11111222222222 33345666777
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCC---c
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGP---E 310 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p---~ 310 (670)
|+..|.-.-+-|+. ++- ..++.+..-+|+++.--+++..|...|.. -+......++..+++....| .
T Consensus 420 ~Y~~lVP~~y~p~~--~~m----~~~lrA~~v~~~~e~ipRiw~D~~~~ght----~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHS--QTM----IHLLRALDVANRLEVIPRIWKDSKEYGHT----FRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHhccceecCCc--hhH----HHHHHHHhhcCcchhHHHHHHHHHHhhhh----hhHHHHHHHHHHHhcCCCCCCChH
Confidence 88888765555665 433 23557888899999999999999888865 34444445555555443222 1
Q ss_pred ccccc-----cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 311 QHVLK-----PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 311 ~~~L~-----~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
...+. |.+..++....--.+|.++.+|+ ...+.+.-.+.++|+.++|...
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~-t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWPA-TSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh-hHHHHHHHHHHHcchHHHHHHH
Confidence 11111 11112222222334566555543 3455566667899999988743
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=4.7e-12 Score=97.36 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
||+++||+||++|++.|++++|.++|++|. +.|+.||..|||+||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 89999999999999999985
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=1.3e-08 Score=115.96 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=163.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 16 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 16 ~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
.++..|...|+.||.+||.+||.-||..|+++.|- +|..|+ -....-+...|+.++.+..++|+ .+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~--~ksLpv~e~vf~~lv~sh~~And---~Enp------ 78 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME--IKSLPVREGVFRGLVASHKEAND---AENP------ 78 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh--cccccccchhHHHHHhccccccc---ccCC------
Confidence 56778999999999999999999999999999999 999999 67777788999999999999994 3332
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 96 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 96 M~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
-.|-..||+.|+.+|...|++.. |+...+ -.-.++..+...|.......++..
T Consensus 79 -------kep~aDtyt~Ll~ayr~hGDli~----fe~veq----------------dLe~i~~sfs~~Gvgs~e~~fl~k 131 (1088)
T KOG4318|consen 79 -------KEPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------------DLESINQSFSDHGVGSPERWFLMK 131 (1088)
T ss_pred -------CCCchhHHHHHHHHHHhccchHH----HHHHHH----------------HHHHHHhhhhhhccCcHHHHHHhh
Confidence 15888899999999999999876 333332 011233333344443333333333
Q ss_pred HhhCCCCCCCchHH--HHhHHHHHHHHHHHHHHHHHHcC-CCHHHH-HHH-HHcCCcHHHHHHHHHHhccCCCCCCcccc
Q 005912 176 MAKDNQPVPPRAMI--LSRKYRTLVSSWIEPLQEEAELG-YEIDYI-ARY-ISEGGLTGERKRWVPRRGKTPLDPDAVGF 250 (670)
Q Consensus 176 M~~~gi~i~p~~~i--~~~ty~~ll~a~~~ll~~m~~~G-~~pd~i-~~~-~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ 250 (670)
+...+- .-|+.+. ......++-..+.+++..+.... ..|-.+ ..- ..-...+++.....+... + .|++ .
T Consensus 132 ~~c~p~-~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~--e-~~~s--~ 205 (1088)
T KOG4318|consen 132 IHCCPH-SLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLV--E-APTS--E 205 (1088)
T ss_pred cccCcc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhh--c-CCCh--H
Confidence 222211 1222211 00001111111111111110000 001111 100 111112222221111111 1 4666 6
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHH
Q 005912 251 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEE 330 (670)
Q Consensus 251 ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~ 330 (670)
+|...+ +.-.-+|+++.|..++.+|.++|+++ ..-.|.-++ +..+...-+..+.+-
T Consensus 206 ~l~a~l----~~alaag~~d~Ak~ll~emke~gfpi----r~HyFwpLl----------------~g~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 206 TLHAVL----KRALAAGDVDGAKNLLYEMKEKGFPI----RAHYFWPLL----------------LGINAAQVFEFVLRG 261 (1088)
T ss_pred HHHHHH----HHHHhcCchhhHHHHHHHHHHcCCCc----ccccchhhh----------------hcCccchHHHHHHHH
Confidence 666665 66678899999999999999999883 333333332 234445556778888
Q ss_pred HHhCCC-CCHHHHHHHHHHHHHhCChhhhhc
Q 005912 331 LDAQGL-PTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 331 M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|.+.|+ |+..|+...+..+...|.+..+..
T Consensus 262 mqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 262 MQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 889999 666888888887887777655543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.95 E-value=2e-06 Score=100.96 Aligned_cols=344 Identities=10% Similarity=-0.000 Sum_probs=211.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
|..+.+.|++.+|+.+++......-.+.... ..|...+...|+++.|...|+++.. +.| +...|..+-..+.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHc
Confidence 4566788999999999888876543333333 4444555668999999999998873 233 356677778888888
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| +.++|+..|.+... +.|+ ...+..+..++...|++++|...+..+......+.. .+..+ ..
T Consensus 124 g---~~~~Ai~~l~~Al~----l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~---------a~~~~-~~ 186 (656)
T PRK15174 124 K---QYATVADLAEQAWL----AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD---------MIATC-LS 186 (656)
T ss_pred C---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH---------HHHHH-HH
Confidence 8 78888888988876 4454 566777888888999999999988877654332211 33333 34
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHH---HhHH--HHHHHHHHHHHHHHHHcCCC-HHH---HHHHHHcCCcHHH
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMIL---SRKY--RTLVSSWIEPLQEEAELGYE-IDY---IARYISEGGLTGE 230 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~---~~ty--~~ll~a~~~ll~~m~~~G~~-pd~---i~~~~~~~g~~~~ 230 (670)
+.+.|++++|..+++.+.+... .++.... +..+ .+-...+...+.......-. +.. +...+...|..++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh
Confidence 7788999999998888766542 1111110 0000 01122333444444433221 222 2234555666664
Q ss_pred ----HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHH-HHHHHHHHc
Q 005912 231 ----RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYV-RVEERLKKL 305 (670)
Q Consensus 231 ----a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~-~~l~~l~k~ 305 (670)
|...|+..... .|+. ...+.. +...+.+.|+.++|+..++...... |+..... .+-..+.
T Consensus 265 A~~~A~~~~~~Al~l--~P~~-~~a~~~----lg~~l~~~g~~~eA~~~l~~al~l~------P~~~~a~~~La~~l~-- 329 (656)
T PRK15174 265 AKLQAAEHWRHALQF--NSDN-VRIVTL----YADALIRTGQNEKAIPLLQQSLATH------PDLPYVRAMYARALR-- 329 (656)
T ss_pred hHHHHHHHHHHHHhh--CCCC-HHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH--
Confidence 78888887653 4653 233433 3478899999999999999988653 3322222 2222222
Q ss_pred cCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCC----CCCc--chhhhhhhHH
Q 005912 306 IKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLW----VPPV--EEEEEEVDEE 378 (670)
Q Consensus 306 ~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~----~p~~--e~~~~~vdeE 378 (670)
..|++++|...++.+.... |.. ..+..+..++...|+.++|...+.. .|.. +++. +.-..
T Consensus 330 -----------~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~-ea~~~ 396 (656)
T PRK15174 330 -----------QVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE-EGLLA 396 (656)
T ss_pred -----------HCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH-HHHHH
Confidence 4677999999999988754 333 3344456678899999999876432 1221 1111 22244
Q ss_pred HHHHHHhcccCCCcHhHHHH
Q 005912 379 VDELISRIKLEEGNTEFWKR 398 (670)
Q Consensus 379 ~~~li~~~~~~~~~~~~w~~ 398 (670)
+.+.+..++.. .....|..
T Consensus 397 ~~~~~~~~~~~-~~~~~W~~ 415 (656)
T PRK15174 397 LDGQISAVNLP-PERLDWAW 415 (656)
T ss_pred HHHHHHhcCCc-cchhhHHH
Confidence 56666666533 23336776
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.74 E-value=2.3e-05 Score=92.18 Aligned_cols=311 Identities=7% Similarity=-0.053 Sum_probs=191.3
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAG--RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~G--v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+..+++...-.|..-.++- -.-+..-...++..+.+.|++..|..+++... .....+ ...+..+..++...|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l--~~~p~~-~~~l~~l~~~~l~~g-- 90 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV--LTAKNG-RDLLRRWVISPLASS-- 90 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH--HhCCCc-hhHHHHHhhhHhhcC--
Confidence 34445554444444333220 11122233556778889999999999999987 333333 334444556666788
Q ss_pred ccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..|+++.. +.|+ ...+..+-..+...|+++.|...+......... ... .+..+...|..
T Consensus 91 -~~~~A~~~l~~~l~----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~--------a~~~la~~l~~ 156 (656)
T PRK15174 91 -QPDAVLQVVNKLLA----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQ--------IFALHLRTLVL 156 (656)
T ss_pred -CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHH--------HHHHHHHHHHH
Confidence 78999999999987 4564 466788888999999999999999999875322 111 78889999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHH--hHHHHHHHHHHHHHHHHHHcCC-CHH----HHHHHHHcCCcHHHHHHHH
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILS--RKYRTLVSSWIEPLQEEAELGY-EID----YIARYISEGGLTGERKRWV 235 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~--~ty~~ll~a~~~ll~~m~~~G~-~pd----~i~~~~~~~g~~~~a~~lf 235 (670)
.|++++|...++.+...... ++...... +...+-...+...+..+....- ... .....+...|..++|...|
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988765421 22211000 0000111223334444333221 111 1123455667777888877
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKY----HRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQ 311 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~----A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~ 311 (670)
+..... .|+. ...+. .+...|.+.|+.++ |+..|+......-. +...+..+-..+.
T Consensus 236 ~~al~~--~p~~-~~~~~----~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~-------- 295 (656)
T PRK15174 236 ESALAR--GLDG-AALRR----SLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-----NVRIVTLYADALI-------- 295 (656)
T ss_pred HHHHhc--CCCC-HHHHH----HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH--------
Confidence 777653 2433 12222 23466777787775 67777776653211 2222222222222
Q ss_pred cccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 312 HVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 312 ~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|...+++.....-.+...+..+-..+...|++++|...
T Consensus 296 -----~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 296 -----RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred -----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567799999999998875532335677788889999999998753
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=0.00054 Score=85.83 Aligned_cols=319 Identities=12% Similarity=0.038 Sum_probs=199.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHH------------
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY------------ 70 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ty------------ 70 (670)
..-..++.+.|.+.+.++... .| |...+..++..+.+.|+.++|...+++..+ +.|+...+
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~----~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ----LAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHhcCC
Confidence 445678999999999988753 44 677888899999999999999999999984 23443332
Q ss_pred -----HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 71 -----NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 71 -----n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
-.+...+.+.| +.++|+..|..... . -.|+.. ............|+.++|.+.++.+.+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g---~~~eA~~~~~~~l~--~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~---- 180 (1157)
T PRK11447 111 EGRQALQQARLLATTG---RTEEALASYDKLFN--G-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN---- 180 (1157)
T ss_pred chhhHHHHHHHHHhCC---CHHHHHHHHHHHcc--C-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC----
Confidence 22233577888 78999999999976 2 233321 11111222234699999999999998864221
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHH--------------hHHHHHH---------HHH
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS--------------RKYRTLV---------SSW 201 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~--------------~ty~~ll---------~a~ 201 (670)
+..+..+-..|.+.|+.++|...|+++...... ........ -.+...+ ..+
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 126788999999999999999999998654310 00000000 0000000 111
Q ss_pred HHHHHHHHHcCCCHHHH----HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 202 IEPLQEEAELGYEIDYI----ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 202 ~~ll~~m~~~G~~pd~i----~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...+.........|... -..+...|..++|...|+..... .|+. ...+. .+...|.+.|+.++|+..|+
T Consensus 255 ~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~-~~a~~----~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKD-SEALG----ALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC-HHHHH----HHHHHHHHcCCHHHHHHHHH
Confidence 11222222222233332 13355678899999999887653 3532 13333 34478899999999999999
Q ss_pred HHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccc-----cccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHH
Q 005912 278 TLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHV-----LKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQK 351 (670)
Q Consensus 278 ~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~-----L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~ 351 (670)
+.....-.. +....+..++.... .|.. .....|+.++|...|++..... |.+ ..+..|-..+..
T Consensus 328 ~Al~~~p~~---~~~~~~~~ll~~~~------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 328 KALALDPHS---SNRDKWESLLKVNR------YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHhCCCc---cchhHHHHHHHhhh------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 987654320 11122222211000 0000 0126788999999999998864 443 567778888999
Q ss_pred hCChhhhhcC
Q 005912 352 ARRINRSRGR 361 (670)
Q Consensus 352 aG~~~eA~~~ 361 (670)
.|+.++|...
T Consensus 398 ~g~~~eA~~~ 407 (1157)
T PRK11447 398 RKDYAAAERY 407 (1157)
T ss_pred CCCHHHHHHH
Confidence 9999998743
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.3e-08 Score=70.42 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHc
Q 005912 25 GRMATTFHFNHLLSCQATCGIPEVAFATFENM 56 (670)
Q Consensus 25 Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M 56 (670)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55555555555555555555555555555555
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.64 E-value=0.00038 Score=87.16 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=114.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHH---------
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI--------- 74 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI--------- 74 (670)
.+...|++++|+..|++..+.. .-+...+..|-..|.+.|++++|...|++... ...-.++...|..++
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHHHHHhhhHHHHH
Confidence 4567899999999999988742 23678889999999999999999999999773 111122223343333
Q ss_pred ---HHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 ---QAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ---~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..+.+.| +.++|...|.+... +.| +...+..+-..+...|++++|++.|+...+..... +
T Consensus 356 ~~g~~~~~~g---~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~---------~ 419 (1157)
T PRK11447 356 QQGDAALKAN---NLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN---------T 419 (1157)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------H
Confidence 2456778 78999999999987 234 45677788899999999999999999998753221 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+..+...|. .++.++|..+++.+..
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 15566666664 4577888888876543
No 21
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=4.4e-08 Score=69.01 Aligned_cols=34 Identities=38% Similarity=0.575 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 61 ~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
.|+.||.+|||+||++||++| ++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G---~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAG---RVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCC---CHHHHHHHHHhCc
Confidence 366777777777777777777 6777777777773
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.62 E-value=5.5e-05 Score=88.32 Aligned_cols=260 Identities=10% Similarity=0.005 Sum_probs=182.7
Q ss_pred cCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEAAG-RMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~G-v~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~ 84 (670)
.+++++|+..|+.....+ ..| +...|+.+-..|...|++++|...|++... +.|+ ..+|..+-..|...|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~~~~~~~la~~~~~~g--- 379 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRVTQSYIKRASMNLELG--- 379 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHCC---
Confidence 367899999999988765 334 456788888889999999999999999773 2455 568888889999999
Q ss_pred cHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 85 RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.++|+..|.+..+ . .| +..+|..+-..|...|++++|...|......... ... .|..+-..|.+.
T Consensus 380 ~~~eA~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~--------~~~~la~~~~~~ 446 (615)
T TIGR00990 380 DPDKAEEDFDKALK--L--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF--------SHIQLGVTQYKE 446 (615)
T ss_pred CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH--------HHHHHHHHHHHC
Confidence 78899999999876 2 34 4678888999999999999999999998875322 111 677788889999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
|++++|...|+...+.. |+... .++.+... +...|..++|...|+.....
T Consensus 447 g~~~eA~~~~~~al~~~----P~~~~---~~~~lg~~---------------------~~~~g~~~~A~~~~~~Al~l-- 496 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF----PEAPD---VYNYYGEL---------------------LLDQNKFDEAIEKFDTAIEL-- 496 (615)
T ss_pred CCHHHHHHHHHHHHHhC----CCChH---HHHHHHHH---------------------HHHccCHHHHHHHHHHHHhc--
Confidence 99999999999987653 22211 13333222 35567889999999886543
Q ss_pred CCCcccchhh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCH
Q 005912 244 DPDAVGFIYS--NPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASK 321 (670)
Q Consensus 244 ~Pd~d~~ty~--~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~ 321 (670)
.|+......+ .++......|...|++++|..++.+....... +...+..+-..+. +.|+.
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-----~~~a~~~la~~~~-------------~~g~~ 558 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-----CDIAVATMAQLLL-------------QQGDV 558 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHH-------------HccCH
Confidence 2322111111 12221223344469999999999987665322 2223333333333 45679
Q ss_pred HHHHHHHHHHHhCC
Q 005912 322 MVVSELKEELDAQG 335 (670)
Q Consensus 322 ~~A~~l~~~M~~~G 335 (670)
++|..+|++..+..
T Consensus 559 ~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 559 DEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=0.0011 Score=79.35 Aligned_cols=306 Identities=11% Similarity=0.032 Sum_probs=182.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHH---HHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV---IQAYT 78 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~L---I~ay~ 78 (670)
...+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|..++++.. .|+...|..+ ...|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~------~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ------SSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc------cCCCCCHHHHHHHHHHHH
Confidence 357899999999999998864 4553 234 89999999999999999999987 5544444333 44677
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
..| +.++|+++|+++.+ ..|+ ...+..++..|...++.++|++.+..+...... .. .|-.++
T Consensus 114 ~~g---dyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~--------~~l~la 176 (822)
T PRK14574 114 NEK---RWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQ--------NYMTLS 176 (822)
T ss_pred HcC---CHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hH--------HHHHHH
Confidence 778 78899999999987 3443 566678889999999999999999998775322 11 443444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHH------HHHHHHHcC--CCH--------HHHHHH
Q 005912 158 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE------PLQEEAELG--YEI--------DYIARY 221 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~------ll~~m~~~G--~~p--------d~i~~~ 221 (670)
..+...++..+|+..++++.+.+- -.++. +..++..+.. .++.+.+.. +.+ +.+...
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P-~n~e~------~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAP-TSEEV------LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCC-CCHHH------HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 444445666669999999998862 12222 2233322221 111121111 111 111111
Q ss_pred HH--------cCCc---HHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCC
Q 005912 222 IS--------EGGL---TGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD 289 (670)
Q Consensus 222 ~~--------~~g~---~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~ 289 (670)
.. .... .+.+..-++.+.. .+-.|.....--.+.++ .+-++...|+..++++.|+.|...+.++
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D-rl~aL~~r~r~~~vi~~y~~l~~~~~~~--- 325 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID-RLGALLVRHQTADLIKEYEAMEAEGYKM--- 325 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH-HHHHHHHhhhHHHHHHHHHHhhhcCCCC---
Confidence 11 1111 2222222333322 22223321111223333 3356677788888888888888877652
Q ss_pred CCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC-----CCCH-HHHHHHHHHHHHhCChhhhhc
Q 005912 290 VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG-----LPTD-GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 290 ~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G-----ip~d-~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|.. ....+-+.+... +.-++|..+++.....- .|.+ .....|..++.-.+++++|..
T Consensus 326 P~y-~~~a~adayl~~-------------~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 326 PDY-ARRWAASAYIDR-------------RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred CHH-HHHHHHHHHHhc-------------CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 332 333333444332 33567777888774432 1223 335678888888888877764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.51 E-value=0.0013 Score=78.77 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=116.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
......|+.++|++++...... -..+...+..+-..|.+.|++++|..+|++... . -..+...+..+...+...|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~-~P~~~~a~~~la~~l~~~g- 97 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS--L-EPQNDDYQRGLILTLADAG- 97 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCC-
Confidence 4556789999999999988762 234566789999999999999999999999652 1 1334667788888999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..+.+... . .|+...+..+-.++...|+.++|...++.+.+..+... ..+..+...+.+
T Consensus 98 --~~~eA~~~l~~~l~--~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---------~~~~~la~~l~~ 162 (765)
T PRK10049 98 --QYDEALVKAKQLVS--G--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQ---------QYPTEYVQALRN 162 (765)
T ss_pred --CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHH
Confidence 78899999999876 2 45433377888888999999999999999887543221 145566777777
Q ss_pred cCCHHHHHHHHHHHh
Q 005912 163 EGRIIELLEALEAMA 177 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~ 177 (670)
.|..++|+..++...
T Consensus 163 ~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 163 NRLSAPALGAIDDAN 177 (765)
T ss_pred CCChHHHHHHHHhCC
Confidence 788777777776443
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.50 E-value=6.6e-05 Score=87.67 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=169.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|...|++++|+..|++..+. .|+ ..+|..+-..|...|++++|...|++... .. ..+...|..+-..|...|
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g- 413 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK--LN-SEDPDIYYHRAQLHFIKG- 413 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcC-
Confidence 456789999999999998764 454 56888888899999999999999999873 21 335788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+... +.| +...|..+-.++.+.|++++|...|+...+... ..|+.|+.+-..|.
T Consensus 414 --~~~~A~~~~~kal~----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---------~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 414 --EFAQAGKDYQKSID----LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---------EAPDVYNYYGELLL 478 (615)
T ss_pred --CHHHHHHHHHHHHH----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHH
Confidence 78899999999876 345 467777888899999999999999999876421 12338899999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
..|++++|...|+...+..-...+... ....++..+ ..++...|..++|..+++.....
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~----~~~~l~~~a-----------------~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYM----NVLPLINKA-----------------LALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccc----cHHHHHHHH-----------------HHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999987765421111110 011111111 01123346788888888876543
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.|+. ...+.. +...+.+.|++++|+.+|+......
T Consensus 538 --~p~~-~~a~~~----la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 538 --DPEC-DIAVAT----MAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred --CCCc-HHHHHH----HHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3543 123433 4588899999999999999886653
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.38 E-value=0.00013 Score=72.00 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=121.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|...|++..... ..+...+..+...|...|++++|...|++.. ... ..+...|+.+...|...|
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~-~~~~~~~~~~~~~~~~~g- 113 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLN-PNNGDVLNNYGTFLCQQG- 113 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhC-CCCHHHHHHHHHHHHHcc-
Confidence 45778899999999998887642 3346777888888999999999999998876 222 345667888888888888
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|...|.+... ....| ....+..+-.++...|++++|.+.|....+.... .+..+..+...|.
T Consensus 114 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~ 180 (234)
T TIGR02521 114 --KYEQAMQQFEQAIE--DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---------RPESLLELAELYY 180 (234)
T ss_pred --cHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------ChHHHHHHHHHHH
Confidence 78889999988876 32222 3456667778888999999999999888764321 1226778888899
Q ss_pred HcCCHHHHHHHHHHHhhC
Q 005912 162 REGRIIELLEALEAMAKD 179 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~ 179 (670)
+.|++++|...|++....
T Consensus 181 ~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT 198 (234)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988765
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.30 E-value=0.00037 Score=68.63 Aligned_cols=202 Identities=10% Similarity=-0.020 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
....+..+...|...|++++|...|++... .. ..+...|..+...|...| +.++|.+.|.+... .. ..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~--~~-~~~~~ 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE--HD-PDDYLAYLALALYYQQLG---ELEKAEDSFRRALT--LN-PNNGD 100 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--hC-CCCHH
Confidence 456778888999999999999999999872 21 334678888999999999 78899999998876 22 23556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 188 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~ 188 (670)
.+..+...+...|++++|.+.|.........+ ..+..+..+-..|.+.|++++|...|....+.. |+..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 169 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------QPARSLENAGLCALKAGDFDKAEKYLTRALQID----PQRP 169 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCCh
Confidence 78888889999999999999999988642111 112267778888999999999999999987754 2211
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCC
Q 005912 189 ILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG 268 (670)
Q Consensus 189 i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~ 268 (670)
. .+..+. ..+...|..++|..+++..... .|+. ...+.. ....+...|+
T Consensus 170 ~---~~~~la---------------------~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~----~~~~~~~~~~ 218 (234)
T TIGR02521 170 E---SLLELA---------------------ELYYLRGQYKDARAYLERYQQT--YNQT-AESLWL----GIRIARALGD 218 (234)
T ss_pred H---HHHHHH---------------------HHHHHcCCHHHHHHHHHHHHHh--CCCC-HHHHHH----HHHHHHHHhh
Confidence 0 122222 2235667889999999887664 2322 133322 3367788999
Q ss_pred HHHHHHHHHHHHH
Q 005912 269 KKYHRKLLRTLQN 281 (670)
Q Consensus 269 ~e~A~~Lf~~M~~ 281 (670)
.+.|..+++.+..
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887754
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.25 E-value=0.0084 Score=72.03 Aligned_cols=324 Identities=9% Similarity=-0.056 Sum_probs=201.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|..+|++..+. -..+...+..+...+...|++++|...+++... . ...+.. |..+-..+...|
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~-~P~~~~-~~~la~~l~~~g- 130 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--G-APDKAN-LLALAYVYKRAG- 130 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHH-HHHHHHHHHHCC-
Confidence 3577889999999999997764 233466677888899999999999999999873 2 123444 888888888999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------cCCCcc-
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNY------------------EGGTKV- 142 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~------------------g~~~~v- 142 (670)
+.++|+..|.+..+ +.|+. ..+..+..++...+..+.|.+.++..... ......
T Consensus 131 --~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 131 --RHWDELRAMTQALP----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 88999999999977 35643 44455666677777777666555532210 000000
Q ss_pred ------------------cccCCCCch-------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-H---HHhH
Q 005912 143 ------------------LHNEGNFGD-------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM-I---LSRK 193 (670)
Q Consensus 143 ------------------~~~~g~~pd-------tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i---~~~t 193 (670)
.......|+ .....+.++...|+.++|...|+.+.+.+.+ .|+.. . ..+.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~-~P~~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI-IPPWAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHH
Confidence 000011111 1111133456779999999999999888642 24321 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-----HHH---HHHHHHcCCcHHHHHHHHHHhccCC-----------CCCCcccchhhh
Q 005912 194 YRTLVSSWIEPLQEEAELGYE-----IDY---IARYISEGGLTGERKRWVPRRGKTP-----------LDPDAVGFIYSN 254 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~-----pd~---i~~~~~~~g~~~~a~~lf~~m~~~g-----------i~Pd~d~~ty~~ 254 (670)
..+-...+...+.......-. +.. +...+...|..++|..+++.+.... -.|+.+ +-.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~---~~~ 360 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD---WLQ 360 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch---HHH
Confidence 222234455566655443311 121 2234567889999999999886531 112211 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhC
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 334 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~ 334 (670)
........+...|+.++|+.+|+++....-. +...+..+-..+. ..|..++|...+++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~-------------~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQ-------------ARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHhh
Confidence 1112446778999999999999998765322 3332222222332 456689999999977764
Q ss_pred CCCCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 335 GLPTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 335 Gip~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
- |++ ..+..+...+...|++++|...
T Consensus 423 ~-Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 423 E-PRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 4 655 5666666678889999988754
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.23 E-value=1.1e-05 Score=84.61 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=85.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS-CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~-~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.+.+.|++++|++++..-....-.|+...|-.++. .+-..++.+.|...++++. ..+-. +...|..++.- ...+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~-~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKA-NPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc-ccccccccccc-cccc-
Confidence 46688999999999966554433455555555444 4555789999999999998 33322 55567777777 5777
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|++++....+ . .++...+..++..+.+.++.+.+.++++.+......+ ..+..|..+-..|.+
T Consensus 92 --~~~~A~~~~~~~~~--~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 92 --DPEEALKLAEKAYE--R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-------DSARFWLALAEIYEQ 158 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T----------T-HHHHHHHHHHHHH
T ss_pred --cccccccccccccc--c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHH
Confidence 67889988887655 2 3566777888999999999999999999987532111 112277888888999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP 242 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g 242 (670)
.|+.++|.++|+...+... .+.-+ ...++..+ ...|..+++..++.......
T Consensus 159 ~G~~~~A~~~~~~al~~~P---~~~~~----~~~l~~~l---------------------i~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDP---DDPDA----RNALAWLL---------------------IDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-T---T-HHH----HHHHHHHH---------------------CTTCHHHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHcCC---CCHHH----HHHHHHHH---------------------HHCCChHHHHHHHHHHHHHC
Confidence 9999999999999888752 22211 23333322 45566777666666654432
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHH
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 322 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~ 322 (670)
..++ ..+. .+..+|...|+.++|+.+|+......-. +.......-+++. +.|+.+
T Consensus 211 -~~~~--~~~~----~la~~~~~lg~~~~Al~~~~~~~~~~p~-----d~~~~~~~a~~l~-------------~~g~~~ 265 (280)
T PF13429_consen 211 -PDDP--DLWD----ALAAAYLQLGRYEEALEYLEKALKLNPD-----DPLWLLAYADALE-------------QAGRKD 265 (280)
T ss_dssp -HTSC--CHCH----HHHHHHHHHT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHT-------------------
T ss_pred -cCHH--HHHH----HHHHHhcccccccccccccccccccccc-----ccccccccccccc-------------cccccc
Confidence 2222 3332 3447778888889999988887764322 3333333334443 445566
Q ss_pred HHHHHHHH
Q 005912 323 VVSELKEE 330 (670)
Q Consensus 323 ~A~~l~~~ 330 (670)
+|..++.+
T Consensus 266 ~A~~~~~~ 273 (280)
T PF13429_consen 266 EALRLRRQ 273 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 66666554
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.21 E-value=0.0021 Score=71.08 Aligned_cols=283 Identities=9% Similarity=-0.018 Sum_probs=187.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHH--HHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHL-LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN--CVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~L-I~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn--~LI~ay~k~g~~~ 84 (670)
.|+++.|.+.+..-.... ++...+-.+ .....+.|+++.|...|.++.+ ..|+...+- ....-+...|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g--- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARN--- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCC---
Confidence 599999998887765542 222333233 3334788999999999999873 356654443 2245677888
Q ss_pred cHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 85 RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.+.|...++...+ ..| +...+..+...|.+.|+++.|.+++..+.+....+.-.. ......+|..++....+.
T Consensus 168 ~~~~Al~~l~~~~~----~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~-~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 168 ENHAARHGVDKLLE----VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR-AMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHHHHHHh
Confidence 78899999999976 345 467788999999999999999999999998653211000 000000444555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
...+....+++.+.+.- +-.|.. ...+. ..+...|..++|........+.
T Consensus 243 ~~~~~l~~~w~~lp~~~-~~~~~~------~~~~A---------------------~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKT-RHQVAL------QVAMA---------------------EHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred cCHHHHHHHHHhCCHHH-hCCHHH------HHHHH---------------------HHHHHCCCHHHHHHHHHHHHhc--
Confidence 56666777777664432 101111 11122 2346778889999888877663
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
.|++ - ++ ++.+.+..++.+++++.++...+.. |+...+..++-.+. ...+.+.+
T Consensus 293 ~~~~--~----l~--~l~~~l~~~~~~~al~~~e~~lk~~------P~~~~l~l~lgrl~------------~~~~~~~~ 346 (398)
T PRK10747 293 QYDE--R----LV--LLIPRLKTNNPEQLEKVLRQQIKQH------GDTPLLWSTLGQLL------------MKHGEWQE 346 (398)
T ss_pred CCCH--H----HH--HHHhhccCCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH------------HHCCCHHH
Confidence 2333 1 11 2355567799999999999887654 33344443332222 25678999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 324 VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 324 A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
|.+.|+...+.. |+..+|..|-..+.+.|+.++|..+
T Consensus 347 A~~~le~al~~~-P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 347 ASLAFRAALKQR-PDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998754 7778888899999999999988643
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.20 E-value=0.0065 Score=72.87 Aligned_cols=318 Identities=11% Similarity=0.023 Sum_probs=203.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+..+...|+.++|+.++++... .-..+....-++...|...|++++|..+|+++.. .. .-|...+..++..|.+.+
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~--~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQALALWQSSLK--KD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-CCCHHHHHHHHHHHhhcC
Confidence 5667888999999999998872 1111233333335578888999999999999983 11 223566678888899998
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|++.+..... ..|+...|-.++..+...++..+|.+.++++....+.. ++.+..++.++.
T Consensus 151 ---q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n---------~e~~~~~~~~l~ 214 (822)
T PRK14574 151 ---RGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS---------EEVLKNHLEILQ 214 (822)
T ss_pred ---CHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Confidence 89999999999865 56777777555444445666666999999998864221 126788899999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchH--HHHh-----------------HHHHHHHHHHHHHHHHH-HcCCCH----HH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAM--ILSR-----------------KYRTLVSSWIEPLQEEA-ELGYEI----DY 217 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~--i~~~-----------------ty~~ll~a~~~ll~~m~-~~G~~p----d~ 217 (670)
+.|-...|.++...-..-- ++... +-.. .-...++.++..+..+. ..+-.| ..
T Consensus 215 ~~~~~~~a~~l~~~~p~~f---~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 215 RNRIVEPALRLAKENPNLV---SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HcCCcHHHHHHHHhCcccc---CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 9999999988776532110 11110 0000 00012222222222222 222223 21
Q ss_pred ----H--HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCC-C
Q 005912 218 ----I--ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-V 290 (670)
Q Consensus 218 ----i--~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~-~ 290 (670)
+ ..++...|...++..-++.+...+..... |+ ...+.++|...+++++|+.+|.......-..... +
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~--y~----~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD--YA----RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH--HH----HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 1 24567778899999999999877643222 32 2457799999999999999999986543221111 1
Q ss_pred CHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh--------CC----CCCH---HHHHHHHHHHHHhCCh
Q 005912 291 SESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA--------QG----LPTD---GTRNVLYQRVQKARRI 355 (670)
Q Consensus 291 ~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~--------~G----ip~d---~t~~~Ll~a~~~aG~~ 355 (670)
.......+.-++. .+++.++|..+.+.+.. .| .|++ ..+..+...+...|++
T Consensus 366 ~~~~~~~L~yA~l-------------d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 366 DLLDADDLYYSLN-------------ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred chHHHHHHHHHHH-------------hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 2222233333333 46779999999999987 12 2444 3445567788899999
Q ss_pred hhhhcC
Q 005912 356 NRSRGR 361 (670)
Q Consensus 356 ~eA~~~ 361 (670)
.+|...
T Consensus 433 ~~Ae~~ 438 (822)
T PRK14574 433 PTAQKK 438 (822)
T ss_pred HHHHHH
Confidence 988753
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.11 E-value=3.6e-05 Score=80.62 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=36.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.++++.|+..++++...+-. +...|..|+.. ...+++++|..++...- +. .++...+..++..+.+.+ +.+
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~--~~--~~~~~~l~~~l~~~~~~~---~~~ 127 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAY--ER--DGDPRYLLSALQLYYRLG---DYD 127 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT----HH
T ss_pred cccccccccccccccccccc-ccccccccccc-ccccccccccccccccc--cc--ccccchhhHHHHHHHHHh---HHH
Confidence 34455555555555443322 33334444444 34455555555544432 11 233444444555555555 334
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHH
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~e 167 (670)
++..++...... ....++...|..+-..+.+.|+.++|.++++...+..+.. ++..+.++..+...|+.+
T Consensus 128 ~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---------~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 128 EAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---------PDARNALAWLLIDMGDYD 197 (280)
T ss_dssp HHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCChH
Confidence 444444443321 2233344444444455555555555555555544432211 113444455555555555
Q ss_pred HHHHHHHHHh
Q 005912 168 ELLEALEAMA 177 (670)
Q Consensus 168 eA~~vf~~M~ 177 (670)
++..++....
T Consensus 198 ~~~~~l~~~~ 207 (280)
T PF13429_consen 198 EAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.06 E-value=0.0018 Score=71.54 Aligned_cols=247 Identities=11% Similarity=-0.020 Sum_probs=167.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFN--HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn--~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+.|+++.|...|.++.+ ..|+...+- .....+...|+++.|...++++.. .. .-+...+..+...|.+.|
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~-P~~~~al~ll~~~~~~~g-- 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VA-PRHPEVLRLAEQAYIRTG-- 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHH--
Confidence 678999999999999976 456654443 335688899999999999999883 22 346788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNV-------KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~-------~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
++++|.+++..+.+ .+..++. .+|..++....+....+...++++.+-+. .-..|.....+
T Consensus 202 -dw~~a~~~l~~l~k--~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------~~~~~~~~~~~ 269 (398)
T PRK10747 202 -AWSSLLDILPSMAK--AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------TRHQVALQVAM 269 (398)
T ss_pred -hHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---------HhCCHHHHHHH
Confidence 89999999999998 4444322 23444444444444455555555544321 11123378889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHHHHHHHHHHHHHHH-HcCCCHHHH---HHHHHcCCcHHHH
Q 005912 157 LRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRTLVSSWIEPLQEEA-ELGYEIDYI---ARYISEGGLTGER 231 (670)
Q Consensus 157 I~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~ll~a~~~ll~~m~-~~G~~pd~i---~~~~~~~g~~~~a 231 (670)
...+.+.|+.++|..+++...+..- .+..+ +.+.....-.......++... +..-.|... -..|...+..++|
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY--DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998877431 23221 111111111233334444333 333345533 3678899999999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
+..|+..... .|+. .+|.. +...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~~--~P~~--~~~~~----La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ--RPDA--YDYAW----LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc--CCCH--HHHHH----HHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998764 4776 54432 44888999999999999986543
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=0.0021 Score=71.92 Aligned_cols=324 Identities=13% Similarity=0.057 Sum_probs=197.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-c
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR-A 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k-~ 80 (670)
+.+-..|++.+|+.+++.|.+. .| .+..|-.|-.+|.+.|+.+.|...|-+-.+ +.|+.+...+=+.-+.+ .
T Consensus 124 N~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhcchhHHHHhh
Confidence 3455678899999999988874 44 567888888899999999999888876652 57777766665555544 4
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| ++.+|...|.+-.+ ..|. .+.|+.|-..+-..|++..|.+.|++..+.. |+ .++.|-.|=..
T Consensus 198 G---rl~ea~~cYlkAi~----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~-------f~dAYiNLGnV 261 (966)
T KOG4626|consen 198 G---RLEEAKACYLKAIE----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN-------FLDAYINLGNV 261 (966)
T ss_pred c---ccchhHHHHHHHHh----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc-------chHHHhhHHHH
Confidence 6 67788888877665 3454 4567777777788999999999999887642 21 23367677777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHH-HH-----hHHHHHHHHHHHHHHHHHHcC-CCHH---HHHHHHHcCCcHH
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMI-LS-----RKYRTLVSSWIEPLQEEAELG-YEID---YIARYISEGGLTG 229 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~-----~ty~~ll~a~~~ll~~m~~~G-~~pd---~i~~~~~~~g~~~ 229 (670)
|...+.+++|...+..-... +|+... .+ |--.++++-++.-+.+..+.. -.|+ -+..++...|.+.
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 77777788887777654332 343221 00 112345555555444433222 2233 2345566677777
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------cC--CCCHHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAV------LG--DVSESDYVRVEER 301 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~------~g--~~~~~~~~~~l~~ 301 (670)
+|...++...... |+. .--|..+-..|...|.+++|..+|..-..-.-.. ++ +-..+.+..++..
T Consensus 338 ea~~cYnkaL~l~--p~h-----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 338 EAVDCYNKALRLC--PNH-----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred HHHHHHHHHHHhC--Ccc-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 7777777665431 222 1112334466777777777777776654321110 00 0112223333333
Q ss_pred HHHccCC-C--------cccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 302 LKKLIKG-P--------EQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 302 l~k~~~~-p--------~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+....+- | .-|+++ ..|+...|...+.+-.... |.- ..++.|-+.+.-+|.+.+|...
T Consensus 411 YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 411 YKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 3333221 2 111222 4566777777776655433 444 6888899999999999998764
No 35
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.96 E-value=0.00071 Score=76.28 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=153.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHchhC----CCCCCCC-HHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAA-----GR-MATTFH-FNHLLSCQATCGIPEVAFATFENMEYG----EDYMKPD-TET 69 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~-----Gv-~Pd~~t-yn~LI~~yak~G~~e~A~~lf~~M~~~----~~gi~Pd-~~t 69 (670)
-..|...|++++|..+|..-.+. |. .|.+.+ .+.+-..|...+++.+|..+|+++... -....|. ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35789999999999999876542 32 222222 244556788889999999999888640 0122333 467
Q ss_pred HHHHHHHHHHcCCccc----HHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccC---CCc
Q 005912 70 YNCVIQAYTRAESYDR----VQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEG---GTK 141 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~----~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~---~~~ 141 (670)
++.|=..|++.|++.. .+.|++++.... ....|.+. -++.+...|+..+.+++|..++....+.-. +.+
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 8888888999995543 334556665521 12233333 357788889999999999999987665321 110
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 142 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV-PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 142 v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i-~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
- -..+.+|+.|=..|-+.|++++|.++|++..+..-.. .-.....+..++.+-.++
T Consensus 363 ~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~------------------- 419 (508)
T KOG1840|consen 363 N----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY------------------- 419 (508)
T ss_pred c----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-------------------
Confidence 0 0111289999999999999999999999875432100 111111122233333333
Q ss_pred HHHcCCcHHHHHHHHHHhcc--CCCCCCcc--cchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 221 YISEGGLTGERKRWVPRRGK--TPLDPDAV--GFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~--~gi~Pd~d--~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
...+....|..+|..-.. .-+.|+.. +++|. .+...|.+.|+.+.|+++......
T Consensus 420 --~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~----nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 --EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL----NLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred --HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH----HHHHHHHHcccHHHHHHHHHHHHH
Confidence 444555555555544321 22334332 34444 455999999999999999887763
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.95 E-value=0.0038 Score=76.28 Aligned_cols=218 Identities=11% Similarity=-0.019 Sum_probs=146.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.+++.+|+..|.+-... .|+......+...+...|++++|...|+++. .. .|+...+..+...+.+.| +.+
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~--~~--~p~~~a~~~la~all~~G---d~~ 559 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS--LH--DMSNEDLLAAANTAQAAG---NGA 559 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh--cc--CCCcHHHHHHHHHHHHCC---CHH
Confidence 37777888877666543 3665443344445568888999988888876 22 344555667777788888 778
Q ss_pred HHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 88 DVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
+|..+|.+... .. |+. ..+..+...+...|++++|...+....+..+ + +..|..+-..|.+.|+.
T Consensus 560 eA~~~l~qAL~--l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~--------~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 560 ARDRWLQQAEQ--RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--S--------ANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHHHHHh--cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--C--------HHHHHHHHHHHHHCCCH
Confidence 88888888776 32 433 3333344445566889999888888876432 1 12778888888889999
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPD 246 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd 246 (670)
++|...|+...... |+... .++.+-. .+...|..++|...++...+. .|+
T Consensus 626 deA~~~l~~AL~l~----Pd~~~---a~~nLG~---------------------aL~~~G~~eeAi~~l~~AL~l--~P~ 675 (987)
T PRK09782 626 PAAVSDLRAALELE----PNNSN---YQAALGY---------------------ALWDSGDIAQSREMLERAHKG--LPD 675 (987)
T ss_pred HHHHHHHHHHHHhC----CCCHH---HHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 99998888877664 33221 1222222 236678899999998887653 354
Q ss_pred cccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 247 AVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 247 ~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.- ..+. .+...+...|++++|+..|+......
T Consensus 676 ~~-~a~~----nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DP-ALIR----QLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CH-HHHH----HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 42 2222 34478899999999999999887554
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.94 E-value=0.0025 Score=70.67 Aligned_cols=254 Identities=8% Similarity=-0.111 Sum_probs=150.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHHHHcCCc
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHF-NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAYTRAESY 83 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~LI~ay~k~g~~ 83 (670)
..|+++.|.+.+.+..+. .|+...+ =..-.++.+.|+.+.|...|.+..+ . .|+. ..--+....+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~--~--~p~~~l~~~~~~a~l~l~~~-- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE--L--AGNDNILVEIARTRILLAQN-- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCcCchHHHHHHHHHHHHCC--
Confidence 467777777777665443 3443222 2223445566777777777777541 1 2332 22233355566667
Q ss_pred ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc------------------
Q 005912 84 DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH------------------ 144 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~------------------ 144 (670)
+.+.|+..++.+.+ . .| +...+..+...|...|+++.|.+++..+.+.+..+.-..
T Consensus 168 -~~~~Al~~l~~l~~--~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 168 -ELHAARHGVDKLLE--M--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred -CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777765 2 34 345666777777777777777777777776543211000
Q ss_pred --------cCC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch---HHHHhHHH--HHHHHHHHH
Q 005912 145 --------NEG-------NFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA---MILSRKYR--TLVSSWIEP 204 (670)
Q Consensus 145 --------~~g-------~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~---~i~~~ty~--~ll~a~~~l 204 (670)
... ..+..+-.+...+...|+.++|..++++..+..-. ++.. .+..+..- .-...+.+.
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-DRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cccchhHHHHHhhhcCCCChHHHHHH
Confidence 000 12237888899999999999999999998886531 1110 11000000 001223333
Q ss_pred HHHH-HHcCCCH--HHH---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005912 205 LQEE-AELGYEI--DYI---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRT 278 (670)
Q Consensus 205 l~~m-~~~G~~p--d~i---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~ 278 (670)
+... ....-.| ..+ -..+.+.|..++|+..|+........|+. ..+.. +...+.+.|+.++|.+++++
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~----La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAM----AADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHH----HHHHHHHcCCHHHHHHHHHH
Confidence 3322 3344446 433 24577889999999999954333445777 55543 44788999999999999987
Q ss_pred HH
Q 005912 279 LQ 280 (670)
Q Consensus 279 M~ 280 (670)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
No 38
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.4e-05 Score=55.48 Aligned_cols=33 Identities=36% Similarity=0.689 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
|||+||++|++.| +.++|.++|.+|.+ .|+.||
T Consensus 2 ~~n~li~~~~~~~---~~~~a~~~~~~M~~--~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAG---RVEEALELFKEMLE--RGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCC---CHHHHHHHHHHHHH--cCCCCC
Confidence 6777777777777 67777777777777 677776
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.90 E-value=0.0035 Score=70.24 Aligned_cols=221 Identities=14% Similarity=0.041 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
..+|..+-+.+-..|++..|..+++.|.+ +.| .+..|.-+-.++...| +...|...|.+-.+ +.|+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie----l~p~fida~inla~al~~~~---~~~~a~~~~~~alq----lnP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE----LKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQ----LNPDLY 184 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh----cCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHh----cCcchh
Confidence 34556666677777777777777777763 233 3566777777777777 56677777776655 556665
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 109 TYALLVECF-TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 109 Ty~~LL~a~-ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
...+-+.-+ ...|++.+|...+-+..+......+ .|+.|=..+-..|++..|..-|++-.+- .|+.
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi---------awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f 251 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI---------AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNF 251 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceee---------eehhcchHHhhcchHHHHHHHHHHhhcC----CCcc
Confidence 554433333 2367777777776666554333233 5777777788889999999999887554 4443
Q ss_pred HHHHhHHHHHHHHHHH-------HHHHHHHcCCCHHHHHH------HHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh
Q 005912 188 MILSRKYRTLVSSWIE-------PLQEEAELGYEIDYIAR------YISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN 254 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~-------ll~~m~~~G~~pd~i~~------~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~ 254 (670)
.- .|-.|-..+.+ +..........|+.-.. -|...|.++-|..-+++.... .|+. ...|++
T Consensus 252 ~d---AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F-~~Ay~N 325 (966)
T KOG4626|consen 252 LD---AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF-PDAYNN 325 (966)
T ss_pred hH---HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc-hHHHhH
Confidence 22 12222222211 11223344555654322 255778999999988887542 3443 234776
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
|- .++-..|++.+|.+.+.+......
T Consensus 326 la----nALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 326 LA----NALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HH----HHHHhccchHHHHHHHHHHHHhCC
Confidence 66 667888999999999988776543
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.88 E-value=0.00016 Score=83.50 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=65.4
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.-||..|+.+.|- +|..|+-.....+...|+.++.+..+.++.+.+. .|-..||+.|..+|.++
T Consensus 31 LiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------------ep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 31 LIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------------EPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------------CCchhHHHHHHHHHHhc
Confidence 578899999999999 9999998888889999999999999998865543 68899999999999999
Q ss_pred CCcccHHHHHH
Q 005912 81 ESYDRVQDVAE 91 (670)
Q Consensus 81 g~~~~~~eAl~ 91 (670)
|++...+.+.+
T Consensus 97 GDli~fe~veq 107 (1088)
T KOG4318|consen 97 GDLILFEVVEQ 107 (1088)
T ss_pred cchHHHHHHHH
Confidence 96654444444
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.85 E-value=0.0038 Score=76.28 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=142.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+.+.|++++|...|+++... .|+...+..+...+.+.|+++.|...|++.. ... .++...+..+...+.+.|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL--~l~-P~~~~l~~~La~~l~~~G--- 590 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE--QRG-LGDNALYWWLHAQRYIPG--- 590 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHhCC---
Confidence 35799999999999997653 4555566777788899999999999999988 322 222333333333444558
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
+.++|+..|.+-.+ +.|+...|..+-.++.+.|+.++|...|.......+.. +..++.+-..|...|
T Consensus 591 r~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------~~a~~nLG~aL~~~G 657 (987)
T PRK09782 591 QPELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---------SNYQAALGYALWDSG 657 (987)
T ss_pred CHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCC
Confidence 79999999999876 56888899999999999999999999999988754321 127888888999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
+.++|..+|+...+.. |+... .+..+-.. +...|..++|...|+..... .
T Consensus 658 ~~eeAi~~l~~AL~l~----P~~~~---a~~nLA~a---------------------l~~lGd~~eA~~~l~~Al~l--~ 707 (987)
T PRK09782 658 DIAQSREMLERAHKGL----PDDPA---LIRQLAYV---------------------NQRLDDMAATQHYARLVIDD--I 707 (987)
T ss_pred CHHHHHHHHHHHHHhC----CCCHH---HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHhc--C
Confidence 9999999999887754 33221 12332222 36678899999999888653 3
Q ss_pred CCc
Q 005912 245 PDA 247 (670)
Q Consensus 245 Pd~ 247 (670)
|+.
T Consensus 708 P~~ 710 (987)
T PRK09782 708 DNQ 710 (987)
T ss_pred CCC
Confidence 544
No 42
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.83 E-value=1.4e-05 Score=55.47 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
+|||+||++|++.|++++|.++|++|. +.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~--~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML--ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCCC
Confidence 379999999999999999999999999 89999984
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.79 E-value=0.062 Score=59.65 Aligned_cols=283 Identities=11% Similarity=-0.033 Sum_probs=165.6
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHchhCCCCCCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH--
Q 005912 34 NHLLSCQA--TCGIPEVAFATFENMEYGEDYMKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-- 108 (670)
Q Consensus 34 n~LI~~ya--k~G~~e~A~~lf~~M~~~~~gi~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-- 108 (670)
..+..+.. ..|+++.|.+.+.... . ..|+... |-..-.++.+.| +.+.|.+.|.+..+ . .|+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~--~--~~~~~~~~~llaA~aa~~~g---~~~~A~~~l~~a~~--~--~p~~~l~ 154 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNA--D--HAAEPVLNLIKAAEAAQQRG---DEARANQHLEEAAE--L--AGNDNIL 154 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh--h--cCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH--h--CCcCchH
Confidence 44555544 4699999999998776 2 2455433 333345566778 78899999998866 2 35542
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 188 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~ 188 (670)
.--+....+...|+.+.|.+.++.+.+..+.. |.++..+...|.+.|++++|.+++..+.+.++. ++...
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~---------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~ 224 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRH---------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEF 224 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHH
Confidence 33445777888999999999999999864321 227889999999999999999999999999863 44332
Q ss_pred H--HHhHHHHHHHHHH-----HHHHHHHHcCC-----CHHHH---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhh
Q 005912 189 I--LSRKYRTLVSSWI-----EPLQEEAELGY-----EIDYI---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYS 253 (670)
Q Consensus 189 i--~~~ty~~ll~a~~-----~ll~~m~~~G~-----~pd~i---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~ 253 (670)
. ....+.+++.... +.+..+....- .|... ...+...|..+.|..+.+...+.. |+.....+.
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~ 302 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH
Confidence 1 0011222232211 12222222221 22221 234556666777776666655431 333111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHH--HHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHH
Q 005912 254 NPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSES--DYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEEL 331 (670)
Q Consensus 254 ~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~--~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M 331 (670)
++. .......++.+.+++.++...+.. |+.. .+...+-.+. .+.|.+++|.+.|+.-
T Consensus 303 -~l~--~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~~~ll~sLg~l~------------~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 303 -LCL--PIPRLKPEDNEKLEKLIEKQAKNV------DDKPKCCINRALGQLL------------MKHGEFIEAADAFKNV 361 (409)
T ss_pred -HHH--HhhhcCCCChHHHHHHHHHHHHhC------CCChhHHHHHHHHHHH------------HHcccHHHHHHHHHHh
Confidence 110 012233455666666665544331 2222 2222221111 2567788888888864
Q ss_pred HhCCC-CCHHHHHHHHHHHHHhCChhhhhc
Q 005912 332 DAQGL-PTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 332 ~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..... |....+..+-..+.+.|+.++|..
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444 555667788888888888887764
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.76 E-value=0.037 Score=62.63 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK----TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~----Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|..+-+-|-.+| +++.|..+|++-.. ... |.+. +|-.--..=.+..+++.|+++.+......-.+.+...
T Consensus 390 w~~faklYe~~~---~l~~aRvifeka~~--V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 390 WVEFAKLYENNG---DLDDARVIFEKATK--VPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHhhc--CCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 444444555556 66677777776554 222 1111 1211112222455556666655544332222222323
Q ss_pred CCCCch---------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHH--HHHHHHHHHHcCCC
Q 005912 146 EGNFGD---------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS--WIEPLQEEAELGYE 214 (670)
Q Consensus 146 ~g~~pd---------tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a--~~~ll~~m~~~G~~ 214 (670)
.+..|- .|+.+++---..|-++....+++.+..-.+ .+|..++ .|..++.. +++.-...-+.|+.
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~---NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIII---NYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHH---HHHHHHHhhHHHHHHHHHHHcCCc
Confidence 333343 788888888889999999999999999887 4776654 34444433 33333455567775
Q ss_pred ----HHH-------HHHHHH--cCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 215 ----IDY-------IARYIS--EGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 215 ----pd~-------i~~~~~--~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
|++ ++.+.+ .+-..+.++.+|+...+ |+.|..--+.| |+ ..+.=-+-|....|+.+++...
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy--Ll--YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY--LL--YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH--HH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 443 222332 24468889999999887 77665422222 11 1111123566677888777643
No 45
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=3.3e-05 Score=53.58 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
+|||++|.+|++.| +.+.|+++|++|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g---~~~~a~~~~~~M~~--~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAG---DPDAALQLFDEMKE--QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCC---CHHHHHHHHHHHHH--hCCCC
Confidence 34555555555555 44555555555555 45554
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=97.69 E-value=0.0091 Score=68.98 Aligned_cols=214 Identities=9% Similarity=0.009 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------HcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHH
Q 005912 11 HSNALEIAYEMEAAGRMAT-TFHFNHLLSCQA---------TCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTR 79 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~ya---------k~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k 79 (670)
+++|+.+|++..+. .|+ ...|..|-.+|. ..+++++|...+++... +.| +...|..+-..+..
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~----ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE----LDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHH
Confidence 45777777766643 444 333443333332 12346777777777662 233 45666666666677
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
.| +.++|...|++..+ +.|+ ...|..+-.+|...|++++|...++...+..+... ..+..+..
T Consensus 351 ~g---~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~---------~~~~~~~~ 414 (553)
T PRK12370 351 HS---EYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA---------AAGITKLW 414 (553)
T ss_pred cc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---------hhHHHHHH
Confidence 77 67778888877765 3454 45566667777788888888888887776533211 12333444
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.+...|++++|...+++..+... |+... ...++ ...+...|..++|...+..+
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~---p~~~~----~~~~l--------------------a~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHL---QDNPI----LLSMQ--------------------VMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhcc---ccCHH----HHHHH--------------------HHHHHhCCCHHHHHHHHHHh
Confidence 46667778888888777665432 22110 11111 12235678888999888776
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
... .|+. .+... .+...|+..| +.|...++.+...
T Consensus 468 ~~~--~~~~--~~~~~---~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 468 STQ--EITG--LIAVN---LLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hhc--cchh--HHHHH---HHHHHHhccH--HHHHHHHHHHHHH
Confidence 443 2332 32222 2335566666 4777777776543
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=97.69 E-value=0.0055 Score=70.76 Aligned_cols=152 Identities=12% Similarity=0.004 Sum_probs=115.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~ 86 (670)
.+++++|...+++..+.. .-+...|..+-..+...|++++|...|++... +.|+ ...|..+-..|...| +.
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G---~~ 388 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAG---QL 388 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC---CH
Confidence 345889999999888652 22567777887888999999999999999873 2454 567888888999999 89
Q ss_pred HHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 87 QDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
++|+..|++..+ +.|+.. .+..++..+...|++++|...+........+.. |..+..+-..|...|+
T Consensus 389 ~eAi~~~~~Al~----l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~--------~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 389 EEALQTINECLK----LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN--------PILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHHHHHh----cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC--------HHHHHHHHHHHHhCCC
Confidence 999999999877 455532 333445557778999999999998876432211 1156778888999999
Q ss_pred HHHHHHHHHHHhhC
Q 005912 166 IIELLEALEAMAKD 179 (670)
Q Consensus 166 ~eeA~~vf~~M~~~ 179 (670)
.++|...+..+...
T Consensus 457 ~~eA~~~~~~~~~~ 470 (553)
T PRK12370 457 HELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887554
No 48
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.67 E-value=5.8e-05 Score=52.35 Aligned_cols=33 Identities=36% Similarity=0.624 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P 65 (670)
.|||++|.+|++.|+++.|..+|++|. +.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~--~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK--EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCC
Confidence 567777777777777777777777777 677666
No 49
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=6.3e-05 Score=50.92 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999874
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.018 Score=65.39 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=169.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATT-FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 88 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~e 88 (670)
+..+|+.+|.++... .+|+ ....-+=.+|..-+++++|.++|+.....+.-..-+...|.+.+=-+-+.= ..---
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH--HHHHH
Confidence 345677777775543 2333 333444466777778888888888776422223345666776664433221 00111
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
|..+.+.++. ...||-++=++|+-.++.+.|.+.|+...+..... . | +|+.+=.=+.....+|.
T Consensus 410 aq~Li~~~~~-------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f--a--Y-----ayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 410 AQDLIDTDPN-------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF--A--Y-----AYTLLGHESIATEEFDK 473 (638)
T ss_pred HHHHHhhCCC-------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc--c--h-----hhhhcCChhhhhHHHHh
Confidence 2233333322 23678888888888888888888887776532211 1 1 45555444555666777
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcc
Q 005912 169 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAV 248 (670)
Q Consensus 169 A~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d 248 (670)
|...|+.-... .|+..= +|.++.-. +.+.+..+.|.-.|+...+ +.|.-
T Consensus 474 a~~~fr~Al~~----~~rhYn---AwYGlG~v---------------------y~Kqek~e~Ae~~fqkA~~--INP~n- 522 (638)
T KOG1126|consen 474 AMKSFRKALGV----DPRHYN---AWYGLGTV---------------------YLKQEKLEFAEFHFQKAVE--INPSN- 522 (638)
T ss_pred HHHHHHhhhcC----CchhhH---HHHhhhhh---------------------eeccchhhHHHHHHHhhhc--CCccc-
Confidence 77777754332 444310 12222222 3566788889888887654 34543
Q ss_pred cchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 249 GFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 249 ~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
..+|..+-..+-+.|+.++|+.+|++..-..-+ -....|..+.-.+ ..++..+|...+
T Consensus 523 ----svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k----n~l~~~~~~~il~--------------~~~~~~eal~~L 580 (638)
T KOG1126|consen 523 ----SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK----NPLCKYHRASILF--------------SLGRYVEALQEL 580 (638)
T ss_pred ----hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC----CchhHHHHHHHHH--------------hhcchHHHHHHH
Confidence 233334446778899999999999987655444 2223333332111 345688999999
Q ss_pred HHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCC
Q 005912 329 EELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWV 365 (670)
Q Consensus 329 ~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~ 365 (670)
+++++.- |.+ ..|-.+-..|.+-|+.+.|..-+.+.
T Consensus 581 EeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 581 EELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9999853 544 67888889999999999998776664
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.59 E-value=0.021 Score=64.56 Aligned_cols=258 Identities=13% Similarity=0.014 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchh---CCCC-CCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccC---
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEY---GEDY-MKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHK--- 101 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~---~~~g-i~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~--- 101 (670)
..|...|-.+|+..|+++.|..+|+.-.+ ...| ..|.+.+ -+.+=..|...+ +..+|..+|.++.....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~---k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG---KYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc
Confidence 34556699999999999999999988663 0122 1233322 223444666777 78889989888864211
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch----HHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 102 -RLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD----PLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 102 -gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd----tyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.-.|. ..|++.|-.+|.+.|++++|...++...+---. .+|..+. .++.+...|+..+++++|..++..
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-----~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-----LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-----hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 22333 456777888899999999999998876642100 0222222 788888899999999999999985
Q ss_pred HhhC--CCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC---CCCCCcccc
Q 005912 176 MAKD--NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT---PLDPDAVGF 250 (670)
Q Consensus 176 M~~~--gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~---gi~Pd~d~~ 250 (670)
-.+. .. +.++.+..+-++..|-.. +.+.|...+|..+|+..... +..- .++
T Consensus 351 al~i~~~~-~g~~~~~~a~~~~nl~~l---------------------~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~ 406 (508)
T KOG1840|consen 351 ALKIYLDA-PGEDNVNLAKIYANLAEL---------------------YLKMGKYKEAEELYKKAIQILRELLGK--KDY 406 (508)
T ss_pred HHHHHHhh-ccccchHHHHHHHHHHHH---------------------HHHhcchhHHHHHHHHHHHHHHhcccC--cCh
Confidence 4332 11 234443333334444333 36778999999999876431 1111 124
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 251 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG--PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 251 ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g--v~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
-.+..|..+...|.+.++..+|.++|.+-..-. +.|...-...+|..+...+. ..|+.++|.++.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~-------------~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR-------------AQGNYEAAEELE 473 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-------------HcccHHHHHHHH
Confidence 445666677789999999999999998765432 22111123344444444444 445688888888
Q ss_pred HHHH
Q 005912 329 EELD 332 (670)
Q Consensus 329 ~~M~ 332 (670)
+...
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 7664
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.054 Score=56.99 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=105.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH------HHHHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT------ETYNCVIQAYTR 79 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~------~tyn~LI~ay~k 79 (670)
.-+.+.++|.++|-+|.+. -.-+..+.-+|=+.|-+.|.++.|.++-..+.. .||. ..---|=.-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-----spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-----SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHHHHHH
Confidence 3467889999999999873 122333445566778889999999999988773 4543 333455566778
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch-HHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-PLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd-tyn~LI~ 158 (670)
.| -++.|..+|..+.. .+. --....--|+..|-...++++|..+-..+.+.+..+.-+ .-. -|--|-.
T Consensus 120 aG---l~DRAE~~f~~L~d--e~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~-----eIAqfyCELAq 188 (389)
T COG2956 120 AG---LLDRAEDIFNQLVD--EGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV-----EIAQFYCELAQ 188 (389)
T ss_pred hh---hhhHHHHHHHHHhc--chh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh-----HHHHHHHHHHH
Confidence 88 67788888888775 221 223456778999999999999999998888765442110 000 1222333
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC
Q 005912 159 ALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.-..+++.|..++.+-.+.+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC
Confidence 3344677888888888776654
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.043 Score=59.64 Aligned_cols=75 Identities=7% Similarity=0.014 Sum_probs=52.3
Q ss_pred HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 219 ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 219 ~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
..||......+.+..+|+...- +.|+. .-|.-|| ..++.|.|+.++|+.+++....+ ++ -+...+..+
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~--~kwqlmi---asc~rrsgnyqka~d~yk~~hrk-fp----edldclkfl 700 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQ--SKWQLMI---ASCFRRSGNYQKAFDLYKDIHRK-FP----EDLDCLKFL 700 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccH--HHHHHHH---HHHHHhcccHHHHHHHHHHHHHh-Cc----cchHHHHHH
Confidence 3566777788889999987643 56887 8887666 46778999999999999988654 22 244444444
Q ss_pred HHHHHHc
Q 005912 299 EERLKKL 305 (670)
Q Consensus 299 l~~l~k~ 305 (670)
.+.+..+
T Consensus 701 vri~~dl 707 (840)
T KOG2003|consen 701 VRIAGDL 707 (840)
T ss_pred HHHhccc
Confidence 4444443
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.47 E-value=0.12 Score=58.87 Aligned_cols=267 Identities=15% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH-HcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-RAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~-k~g 81 (670)
..+...|++++|++++..-... +.-....+...-..|.+.|+.++|..+|..+.. ..|+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~----rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID----RNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHhhhc
Confidence 4577899999999999664432 333445557777888999999999999999883 2466665544444443 221
Q ss_pred Cc--ccHHHHHHHHHHhHhcc--------------------------------CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005912 82 SY--DRVQDVAELLGMMVEDH--------------------------------KRLQPNVKTYALLVECFTKYCAVTEAI 127 (670)
Q Consensus 82 ~~--~~~~eAl~lf~eM~~~~--------------------------------~gi~Pd~~Ty~~LL~a~ak~g~~d~A~ 127 (670)
.+ +.......+|+++.... +||.+ +|+.|-.-|.......-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 10 02455556666554321 33321 4455555555444444455
Q ss_pred HHHHHHHHccCCCccccc----CCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHH----H--hH
Q 005912 128 RHFRALQNYEGGTKVLHN----EGNFGD----PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL----S--RK 193 (670)
Q Consensus 128 ~lf~~M~~~g~~~~v~~~----~g~~pd----tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~----~--~t 193 (670)
+++.......-....... ....|. ++..|-..|-+.|+.++|+++++.-++.. |+.+-+ + +.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht----Pt~~ely~~KarilK 239 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT----PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHH
Confidence 555554432111000000 011222 55667778899999999999999887764 443211 1 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCH---H-HHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh--hHHHHHHHHHhcC
Q 005912 194 YRTLVSSWIEPLQEEAELGYEI---D-YIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN--PMETSFKQRCLED 267 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~p---d-~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~--LIe~lv~~~~~~G 267 (670)
..+-+..+.+.+.........- | ....++-++|.+++|...+....+.+..|-.+..-.-+ .+-.+..+|.+.|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 1122344444454444444332 2 23466778899999999999988776544332221111 1123558889999
Q ss_pred CHHHHHHHHHHHHH
Q 005912 268 GKKYHRKLLRTLQN 281 (670)
Q Consensus 268 ~~e~A~~Lf~~M~~ 281 (670)
+...|++.|.....
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99888877766543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.45 E-value=0.13 Score=55.46 Aligned_cols=279 Identities=14% Similarity=0.050 Sum_probs=165.7
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 34 NHLLSCQAT--CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 34 n~LI~~yak--~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
+.+..+..+ .|++..|+++..+-. +.+ +--...|-.=..+--+.| +.+.+-+++.+..+ ..-.++...+-
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rna--e~~-e~p~l~~l~aA~AA~qrg---d~~~an~yL~eaae--~~~~~~l~v~l 157 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNA--EHG-EQPVLAYLLAAEAAQQRG---DEDRANRYLAEAAE--LAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhh--hcC-cchHHHHHHHHHHHHhcc---cHHHHHHHHHHHhc--cCCCchHHHHH
Confidence 445555544 589999999998866 333 223444555555556677 67788888888866 22245566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH--H
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM--I 189 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~--i 189 (670)
+........|+.+.|..-...+......+ |.+......+|.+.|+..++..++..|.+.|+ +++..+ .
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~---------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~-l~~~e~~~l 227 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRH---------PEVLRLALRAYIRLGAWQALLAILPKLRKAGL-LSDEEAARL 227 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCC---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-CChHHHHHH
Confidence 77778889999999998888877643322 22688999999999999999999999999997 344332 1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-CCCCCcccchhhhhHHHHHHHHHhcCC
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-PLDPDAVGFIYSNPMETSFKQRCLEDG 268 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~ 268 (670)
-..+|.++++.+ ...+..+....+.+..... .-.|.. . . +++..+.+.|+
T Consensus 228 e~~a~~glL~q~---------------------~~~~~~~gL~~~W~~~pr~lr~~p~l--~--~----~~a~~li~l~~ 278 (400)
T COG3071 228 EQQAWEGLLQQA---------------------RDDNGSEGLKTWWKNQPRKLRNDPEL--V--V----AYAERLIRLGD 278 (400)
T ss_pred HHHHHHHHHHHH---------------------hccccchHHHHHHHhccHHhhcChhH--H--H----HHHHHHHHcCC
Confidence 234566666555 2222233333344443321 111211 1 1 12244455555
Q ss_pred HHHHHHHHHHHHHCCCCc-----cCC---CC-HHHHHHHHHHHHHccCCC-ccccc---ccccCCHHHHHHHHHHHHhCC
Q 005912 269 KKYHRKLLRTLQNEGPAV-----LGD---VS-ESDYVRVEERLKKLIKGP-EQHVL---KPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 269 ~e~A~~Lf~~M~~~gv~~-----~g~---~~-~~~~~~~l~~l~k~~~~p-~~~~L---~~~~g~~~~A~~l~~~M~~~G 335 (670)
.++|.+++.+-.+++..+ .+. .+ ..-...+-..+...+..| .+.++ .-+++.|.+|...|+.-...+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 555555555554444331 000 01 111111111111111112 11111 137788999999999444433
Q ss_pred CCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 336 LPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 336 ip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|...+|+-+-.++.+.|+..+|..
T Consensus 359 -~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 359 -PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred -CChhhHHHHHHHHHHcCChHHHHH
Confidence 666899999999999999988864
No 56
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00013 Score=49.36 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
|||+||++|++.| +.++|.++|++|++
T Consensus 2 ~y~~li~~~~~~~---~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMG---QFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccc---hHHHHHHHHHHHhH
Confidence 4444444444444 44444444444444
No 57
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.0014 Score=58.75 Aligned_cols=83 Identities=14% Similarity=0.285 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCC-CCCHHHHHHHHHHHHHcCC----c-ccHHHHHHHHHHhHhccCCCCCCH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETYNCVIQAYTRAES----Y-DRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi-~Pd~~tyn~LI~ay~k~g~----~-~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
...|.-+...+++.....+|+.++ +.|+ .|++.+||.++.+.++... + .++-..+.+|.+|.. .+++|+.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk--RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~--~~lKP~~ 104 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK--RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS--NKLKPND 104 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH--hccCCcH
Confidence 555666666799999999999999 8999 9999999999999987642 0 035678899999999 8999999
Q ss_pred HHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKY 120 (670)
Q Consensus 108 ~Ty~~LL~a~ak~ 120 (670)
.||+.++.++.+.
T Consensus 105 etYnivl~~Llkg 117 (120)
T PF08579_consen 105 ETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 58
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.00084 Score=60.05 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHchhCCCCCCCCHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCG--------IPEVAFATFENMEYGEDYMKPDTETYNC 72 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G--------~~e~A~~lf~~M~~~~~gi~Pd~~tyn~ 72 (670)
|..+...+++...-.+|+.+++.|+ .|++.+||.++.+.++.. ++-..+.+|..|. ..+++|+..|||+
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL--~~~lKP~~etYni 109 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL--SNKLKPNDETYNI 109 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH--HhccCCcHHHHHH
Confidence 5566677999999999999999999 999999999999998864 3556788999999 7899999999999
Q ss_pred HHHHHHHc
Q 005912 73 VIQAYTRA 80 (670)
Q Consensus 73 LI~ay~k~ 80 (670)
+|.++.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 99998764
No 59
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.30 E-value=0.084 Score=64.41 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi 103 (670)
+...|-.-|......+++++|++++++.. ..|.+. ...|.++++--...| .-+...++|++..+ .
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL---~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcq----y 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERAL---KTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQ----Y 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHh---hhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHH----h
Confidence 46788888999999999999999999987 233222 356888888777777 67888899999876 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 005912 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV 183 (670)
Q Consensus 104 ~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i 183 (670)
.---..|..|...|.+.+..++|-++++.|.++ .+..+.+|..+++.+.+...-+.|.+++.+-.+.=-
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-- 1595 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-- 1595 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc--
Confidence 233467899999999999999999999999975 222233899999999999999999999987665421
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHH
Q 005912 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQ 262 (670)
Q Consensus 184 ~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~ 262 (670)
...+ -.+|+..+ .+--+.|..+.++.+|+.... +.-+.| .|+..| ++
T Consensus 1596 k~eH-------v~~IskfA-----------------qLEFk~GDaeRGRtlfEgll~ayPKRtD----lW~VYi----d~ 1643 (1710)
T KOG1070|consen 1596 KQEH-------VEFISKFA-----------------QLEFKYGDAERGRTLFEGLLSAYPKRTD----LWSVYI----DM 1643 (1710)
T ss_pred hhhh-------HHHHHHHH-----------------HHHhhcCCchhhHHHHHHHHhhCccchh----HHHHHH----HH
Confidence 1112 22333221 122455788899999988754 433333 366555 78
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 005912 263 RCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 263 ~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
-.+.|+.+.+..||+.....++.
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999988
No 60
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.29 E-value=0.0011 Score=73.27 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
+++|..|.+.|..+.+..+++.=. ..||-||.+|||.||..+.+.| +...|.++..+|.. .+...+..|+...
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~--~yGiF~D~~s~n~Lmd~fl~~~---~~~~A~~V~~~~~l--Qe~~~~~~t~~L~ 179 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRL--QYGIFPDNFSFNLLMDHFLKKG---NYKSAAKVATEMML--QEEFDNPSTQALA 179 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChh--hcccCCChhhHHHHHHHHhhcc---cHHHHHHHHHHHHH--hhccCCchHHHHH
Confidence 345555555555555555444444 4445555555555555555555 34444444444444 3333444444444
Q ss_pred HHHHHHc
Q 005912 114 VECFTKY 120 (670)
Q Consensus 114 L~a~ak~ 120 (670)
+.+|.+.
T Consensus 180 l~~~~~~ 186 (429)
T PF10037_consen 180 LYSCYKY 186 (429)
T ss_pred HHHHHHh
Confidence 4444443
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.26 E-value=0.31 Score=52.38 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=100.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA 80 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~---LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~ 80 (670)
+...|++++|..++++..+. .+.+...++. +....-..+....+...+.... +..|+ ...+..+-..+...
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA----PENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccC----cCCCCcHHHHHHHHHHHHHc
Confidence 45678899999998887764 2223334442 1111222355555555554421 12333 33444555677788
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CcccccCCCCchHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~-~~v~~~~g~~pdtyn~LI~ 158 (670)
| +.++|...+++..+ +.|+ ...+..+-..|...|++++|.+++......... +... ...|-.+-.
T Consensus 128 G---~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~------~~~~~~la~ 194 (355)
T cd05804 128 G---QYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR------GHNWWHLAL 194 (355)
T ss_pred C---CHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh------HHHHHHHHH
Confidence 8 78889999998876 2344 566777888888999999999999887664221 1110 004556778
Q ss_pred HHHHcCCHHHHHHHHHHHhhC
Q 005912 159 ALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.|...|++++|..+|+.....
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhcc
Confidence 889999999999999987443
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.24 E-value=0.0053 Score=64.95 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=95.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH--cCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR--AES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k--~g~ 82 (670)
|...|+++.|++++..- .+.......+..|.+.++++.|.+.|+.|+ + +..|....+ |..+++. .|.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~--~--~~eD~~l~q-La~awv~l~~g~ 180 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ--Q--IDEDSILTQ-LAEAWVNLATGG 180 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--C--CSCCHHHHH-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--h--cCCcHHHHH-HHHHHHHHHhCc
Confidence 44567777777666431 356666777888888888888888888887 2 234544333 3333332 121
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+...+|+.+|+++.. ...++..+.+.+..++...|++++|.+++.+..... ...|++...+|..+..
T Consensus 181 -e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---------~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 181 -EKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---------PNDPDTLANLIVCSLH 247 (290)
T ss_dssp -TCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence 256788888888764 356777888888888888888888888877755432 1224456667777777
Q ss_pred cCCH-HHHHHHHHHHhhC
Q 005912 163 EGRI-IELLEALEAMAKD 179 (670)
Q Consensus 163 ~G~~-eeA~~vf~~M~~~ 179 (670)
.|+. +.+.+.+.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 7776 5667777777664
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.55 Score=51.87 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=168.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++..|.++|..-.+ ..|+.-.|++.|++=.+-..++.|+.++++... +.|++.+|--...-=-++| .+.
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g---~~~ 224 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHG---NVA 224 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcC---cHH
Confidence 4666777777765433 467777778888877777777888888777652 3577777766666666677 555
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHccCCCc----------------------
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFT----KYCAVTEAIRHFRALQNYEGGTK---------------------- 141 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a----k~g~~d~A~~lf~~M~~~g~~~~---------------------- 141 (670)
.|..+|..-.. ..-|...-..|+.+++ ++..++.|.-+|.....+-+...
T Consensus 225 ~aR~VyerAie----~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 225 LARSVYERAIE----FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 66666655443 1123333344444554 34455666666655554322110
Q ss_pred --cc-----------ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH
Q 005912 142 --VL-----------HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 208 (670)
Q Consensus 142 --v~-----------~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m 208 (670)
++ ......-|+|=-+++.--..|+.+...++|+.-...- +|-.- ...|.-.|--+++
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---pp~~e--kr~W~RYIYLWin----- 370 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---PPASE--KRYWRRYIYLWIN----- 370 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CchhH--HHHHHHHHHHHHH-----
Confidence 00 0001111155566666666677777777777665432 22110 0012222211111
Q ss_pred HHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccC
Q 005912 209 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLG 288 (670)
Q Consensus 209 ~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g 288 (670)
...+--.....++.++.+++...+ +-|. .++||+-+=-....--.++.++..|.+++.... |..
T Consensus 371 --------YalyeEle~ed~ertr~vyq~~l~--lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~c--- 434 (677)
T KOG1915|consen 371 --------YALYEELEAEDVERTRQVYQACLD--LIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKC--- 434 (677)
T ss_pred --------HHHHHHHHhhhHHHHHHHHHHHHh--hcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccC---
Confidence 000111234467778888888766 3343 468887664223333357788889988887654 444
Q ss_pred CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCC
Q 005912 289 DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPL 363 (670)
Q Consensus 289 ~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~ 363 (670)
|....+..-|+.=.++ +.++.+..++++..+.+-.+..+|.-.-..=-.-|+++.|++++.
T Consensus 435 -PK~KlFk~YIelElqL-------------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 435 -PKDKLFKGYIELELQL-------------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred -CchhHHHHHHHHHHHH-------------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5655555554433332 337777778888777663333666655555556677888777654
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.041 Score=62.51 Aligned_cols=237 Identities=12% Similarity=0.028 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHc-CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAG--RMATTFHFNHLLSCQATC-GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~G--v~Pd~~tyn~LI~~yak~-G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
.+|-..+++++|..+|+..+..- ..-+...|.+.|=.+-+. ..--.|..+.+.++ -.+.||.++=++|.-
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~-------~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDP-------NSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCC-------CCcHHHHHhcchhhh
Confidence 35777889999999999998642 234777887777554332 12234555666555 357899999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH---
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--- 155 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~--- 155 (670)
.+ +.+.|++.|..-.+ +.| ..++|+.+=.-+.....+|.|...|+..... .|..||+
T Consensus 434 Qk---dh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~------------~~rhYnAwYG 494 (638)
T KOG1126|consen 434 QK---DHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV------------DPRHYNAWYG 494 (638)
T ss_pred hh---HHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC------------CchhhHHHHh
Confidence 99 89999999998866 567 6788888888888999999999999876552 2335555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWV 235 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf 235 (670)
|=-.|.|.++++.|.--|+.-.+-+ +.+.++.. .+. ..+-+.|..++|..++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~-~~g------------------------~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILC-HIG------------------------RIQHQLKRKDKALQLY 546 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC---ccchhHHh-hhh------------------------HHHHHhhhhhHHHHHH
Confidence 5567999999999999999775544 22333211 111 1123446778888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHH-HHHHHcc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE-ERLKKLI 306 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l-~~l~k~~ 306 (670)
+..... .|.--+--|. ....+...++.++|+..|+++...- |+......++ ..+.+++
T Consensus 547 ~~A~~l--d~kn~l~~~~-----~~~il~~~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 547 EKAIHL--DPKNPLCKYH-----RASILFSLGRYVEALQELEELKELV------PQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHhc--CCCCchhHHH-----HHHHHHhhcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHc
Confidence 776432 1211111221 2244566788888988888887543 4455555544 4444433
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.10 E-value=0.44 Score=50.50 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 9 GDHSNALEIAYEMEAAG-RMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~G-v~Pd--~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
+..+.++.-+.++.... ..|+ ...|..+=..|.+.|+.+.|...|++... .. ..+...|+.+-..|...| +
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~-P~~~~a~~~lg~~~~~~g---~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LR-PDMADAYNYLGIYLTQAG---N 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cC-CCCHHHHHHHHHHHHHCC---C
Confidence 44566777777777532 2222 34566666778889999999999988772 21 235788999999999999 7
Q ss_pred HHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHH-HHHHHHHHHc
Q 005912 86 VQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL-SLYLRALCRE 163 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty-n~LI~ay~k~ 163 (670)
.++|+..|+...+ +.|+ ..+|..+-.++...|++++|.+.|+...+..... .+ ......+...
T Consensus 114 ~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~-----------~~~~~~~~l~~~~ 178 (296)
T PRK11189 114 FDAAYEAFDSVLE----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND-----------PYRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHcc
Confidence 8899999998876 4564 5677888888889999999999999887743221 12 1222223456
Q ss_pred CCHHHHHHHHHHHhh
Q 005912 164 GRIIELLEALEAMAK 178 (670)
Q Consensus 164 G~~eeA~~vf~~M~~ 178 (670)
++.++|...|.....
T Consensus 179 ~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 179 LDPKQAKENLKQRYE 193 (296)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789999999976543
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.07 E-value=0.42 Score=51.65 Aligned_cols=254 Identities=13% Similarity=0.029 Sum_probs=171.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++.+|+++..+-.+.+=.|- ..|-.-..+--+.|+.+.|-.++.+.. +..-.++...+-+.-.-....| +.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaa--e~~~~~~l~v~ltrarlll~~~---d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAA--ELAGDDTLAVELTRARLLLNRR---DYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHh--ccCCCchHHHHHHHHHHHHhCC---Cch
Confidence 6899999999888766654443 344444455567788899988888887 3333566677777777788888 445
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc-----------------cc-----
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-----------------HN----- 145 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~-----------------~~----- 145 (670)
.|..-..+..+ .+ .-+.........+|.+.|++.....+...|.+.+.-.+.. +-
T Consensus 171 aA~~~v~~ll~--~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 171 AARENVDQLLE--MT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred hHHHHHHHHHH--hC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 55555655554 22 2356778888888888888888888888888877643211 00
Q ss_pred -----------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHH-----HHHHHHH-HHH
Q 005912 146 -----------EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV-----SSWIEPL-QEE 208 (670)
Q Consensus 146 -----------~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll-----~a~~~ll-~~m 208 (670)
....|..-.+++.-|.++|..++|.++..+-.+++- +++-. .+-.-+ ....+.+ +..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 011122556788888999999999999988877764 44411 111110 0111222 234
Q ss_pred HHcCCCHHHHH---HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 209 AELGYEIDYIA---RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 209 ~~~G~~pd~i~---~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
...+-.|+.+. +.|.+.+...+|...|+.-.+. .|+. ++|+- +.+.|.+.|+.++|.+.+++-...-.
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~--~~~~~----la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSA--SDYAE----LADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCCh--hhHHH----HHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 56788887655 5688899999999999976554 4777 66643 45999999999999999987664433
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.033 Score=58.45 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH-
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL- 112 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~- 112 (670)
+-+=.+|.+-|.+.+|...|+.-.. -.|-+.||-.|-+.|.+-. +...|+.+|.+-.. ..|-.+||-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~rid---QP~~AL~~~~~gld----~fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRID---QPERALLVIGEGLD----SFPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhc---cHHHHHHHHhhhhh----cCCchhhhhhh
Confidence 5666777777777777777766431 1566667777777777776 77777777777654 4566666633
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH---
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI--- 189 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i--- 189 (670)
+...+-..++.+.|.++++...+... .++. ...++-.+|.-.++++-|++.++.+.+-|+. +|..+.
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~-~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHP-INVE--------AIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCC-ccce--------eeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 44556667777777777777765432 2222 3445556666777777777777777777763 454321
Q ss_pred HHhHHHHHH----HHHHHHHHHHHHcCCCHHHHHH---HHHcCCcHHHHHHHHHHhccCCCCCCcc-cchhhhhHHHHHH
Q 005912 190 LSRKYRTLV----SSWIEPLQEEAELGYEIDYIAR---YISEGGLTGERKRWVPRRGKTPLDPDAV-GFIYSNPMETSFK 261 (670)
Q Consensus 190 ~~~ty~~ll----~a~~~ll~~m~~~G~~pd~i~~---~~~~~g~~~~a~~lf~~m~~~gi~Pd~d-~~ty~~LIe~lv~ 261 (670)
+++.|..-+ .+..+.+..+...|...|+.-. -...-|+..-|.+.|+..... |.+ .-++|+|- -
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~----d~~h~ealnNLa----v 437 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS----DAQHGEALNNLA----V 437 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc----CcchHHHHHhHH----H
Confidence 111111111 1111222333334444444321 123456777788888776543 222 24566553 4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005912 262 QRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 262 ~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
.-.+.|+++.|..++......
T Consensus 438 L~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhh
Confidence 458999999999999876543
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.02 E-value=0.062 Score=54.35 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAY 77 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay 77 (670)
..|.+.|+++.|...|++.... .|+ ...+..+-..|.+.|+++.|...|+.+.. ...-.|.. .++..+-.++
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCchHHHHHHHHHHH
Confidence 4577899999999999998764 232 24667788899999999999999999873 11112222 2344444444
Q ss_pred HHc--------CCcccHHHHHHHHHHhHhccCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 005912 78 TRA--------ESYDRVQDVAELLGMMVEDHKRLQPNVK-TY-----------------ALLVECFTKYCAVTEAIRHFR 131 (670)
Q Consensus 78 ~k~--------g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty-----------------~~LL~a~ak~g~~d~A~~lf~ 131 (670)
.+. | +.+.|.+.|...... .|+.. .+ -.+-..|.+.|+...|...+.
T Consensus 118 ~~~~~~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 118 YNQIDRVDRDQT---AAREAFEAFQELIRR----YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHhcccccCCHH---HHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 443 4 678899999998762 34432 11 123456778899999999999
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
...+..... ...+..+..+..+|.+.|+.++|...++.+..+.
T Consensus 191 ~al~~~p~~------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TVVENYPDT------PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHCCCC------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 988753210 0112278899999999999999999999886653
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.01 E-value=0.41 Score=54.76 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=62.5
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHH
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 329 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~ 329 (670)
+.|+... +...|.+.|+.++|+.+++....+.-. ...-|..--..+. +.|...+|.+..+
T Consensus 193 ~lw~~~~--lAqhyd~~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilK-------------h~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 193 LLWTLYF--LAQHYDYLGDYEKALEYIDKAIEHTPT-----LVELYMTKARILK-------------HAGDLKEAAEAMD 252 (517)
T ss_pred HHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHH-------------HCCCHHHHHHHHH
Confidence 4454443 567788999999999999988776422 1222222223333 5677889998888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 330 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 330 ~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.-+..-.-....=+--...+.++|++++|...
T Consensus 253 ~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 253 EARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88776654445555567778899999998865
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.27 Score=51.89 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHH---HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH--HHHHHHH
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYN---CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY--ALLVECF 117 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn---~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty--~~LL~a~ 117 (670)
..++++|..+|-+|. .-|..||- +|=+-|-+.| .++.|+++-.-+... .++.-+.... --|-.-|
T Consensus 48 s~Q~dKAvdlF~e~l------~~d~~t~e~~ltLGnLfRsRG---EvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 48 SNQPDKAVDLFLEML------QEDPETFEAHLTLGNLFRSRG---EVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred hcCcchHHHHHHHHH------hcCchhhHHHHHHHHHHHhcc---hHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 468899999999998 44554443 4555677788 899999999888762 2222222211 2244556
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-..|.+|.|+.+|..+..-+.- -+...--|+.-|-....+++|.++=+++.+.+-
T Consensus 118 m~aGl~DRAE~~f~~L~de~ef---------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEF---------AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 7899999999999988763210 011566799999999999999999998887764
No 71
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.92 E-value=0.0093 Score=66.00 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHH---HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 17 IAYEME---AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 17 lf~~M~---~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
++..|. ..+...+.+....+++.+...-+++.+..++-+.........--..|.+++|..|.+.| ..+.++.++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~---~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELG---AEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcC---CHHHHHHHH
Confidence 444444 23566788889999999998899999999888887411122222334469999999999 789999999
Q ss_pred HHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 94 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 94 ~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
..=.. .|+-||.+|||.||..+.+.|++..|.++...|...+...+-. |+..-+.+|.+.
T Consensus 127 ~n~~~--yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~--------t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQ--YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPS--------TQALALYSCYKY 186 (429)
T ss_pred hChhh--cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCch--------HHHHHHHHHHHh
Confidence 99888 9999999999999999999999999999999998765433222 666666666665
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.71 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=74.5
Q ss_pred HcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHH
Q 005912 223 SEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERL 302 (670)
Q Consensus 223 ~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l 302 (670)
.--++..-|.-+|+.... ++|+ |...|.+|= ..|.+-+++++|++.|......|-. +...+..+-..+
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPn-DsRlw~aLG----~CY~kl~~~~eAiKCykrai~~~dt-----e~~~l~~LakLy 476 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPN-DSRLWVALG----ECYEKLNRLEEAIKCYKRAILLGDT-----EGSALVRLAKLY 476 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCC-chHHHHHHH----HHHHHhccHHHHHHHHHHHHhcccc-----chHHHHHHHHHH
Confidence 334455556666666543 4565 346676555 8889999999999999988876654 556666666666
Q ss_pred HHccCCCcccccccccCCHHHHHHHHHHH----HhCCCCCH---HHHHHHHHHHHHhCChhhhhc
Q 005912 303 KKLIKGPEQHVLKPKAASKMVVSELKEEL----DAQGLPTD---GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 303 ~k~~~~p~~~~L~~~~g~~~~A~~l~~~M----~~~Gip~d---~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
.++.. ..+|...|+.- ...|...+ ....-|-.-+.+.+++++|..
T Consensus 477 e~l~d-------------~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 477 EELKD-------------LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHh-------------HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 66554 66777777554 34566333 233346677788888888864
No 73
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.0044 Score=61.82 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC------------c-ccHH
Q 005912 26 RMATTFHFNHLLSCQATC-----GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES------------Y-DRVQ 87 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~-----G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~------------~-~~~~ 87 (670)
-..|-.+|..+|..|.+. |.++-....+..|. +.|+..|..+||.||..+=+..- | .+.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 346889999999999865 78999999999999 89999999999999999876321 1 2456
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV-TEAIRHFRALQN 135 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~-d~A~~lf~~M~~ 135 (670)
-|++++++|.. .|+.||..|+..|++.|++.+.. .+..++.-.|-+
T Consensus 121 c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 121 CAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 78999999999 99999999999999999988764 345555555554
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.84 E-value=0.18 Score=53.43 Aligned_cols=189 Identities=15% Similarity=0.026 Sum_probs=124.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|+.+.|+..|.+..+.. ..+...|+.+-..|...|+++.|...|++... +.|+ ..+|..+-..|...|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g- 146 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYLNRGIALYYGG- 146 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC-
Confidence 4677899999999999888742 23578899999999999999999999999873 3454 677888888889999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|++.|+.-.+ ..|+..........+...++.++|...|....... .+. .|.. --.+..
T Consensus 147 --~~~eA~~~~~~al~----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~----------~~~~-~~~~~~ 208 (296)
T PRK11189 147 --RYELAQDDLLAFYQ----DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE----------QWGW-NIVEFY 208 (296)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc----------ccHH-HHHHHH
Confidence 88999999998876 35654322333333446778999999997654321 111 2321 222334
Q ss_pred cCCHHHHHHHHHHHhhCC---CCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 163 EGRIIELLEALEAMAKDN---QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g---i~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
.|+..++ ..|..+.+.- +.+.|+.. -.|..+ -..+...|..++|...|+...
T Consensus 209 lg~~~~~-~~~~~~~~~~~~~~~l~~~~~---ea~~~L---------------------g~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 209 LGKISEE-TLMERLKAGATDNTELAERLC---ETYFYL---------------------AKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred ccCCCHH-HHHHHHHhcCCCcHHHHHHHH---HHHHHH---------------------HHHHHHCCCHHHHHHHHHHHH
Confidence 5666554 3555554321 11111100 012111 123467889999999999886
Q ss_pred cC
Q 005912 240 KT 241 (670)
Q Consensus 240 ~~ 241 (670)
..
T Consensus 264 ~~ 265 (296)
T PRK11189 264 AN 265 (296)
T ss_pred Hh
Confidence 54
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.72 E-value=0.076 Score=58.51 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
.+|+..+...++++.|..+|+++.. .. |+ .+-.|.+.|...+ +-.+|++++.+... . ..-|......-
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~--~~--pe--v~~~LA~v~l~~~---~E~~AI~ll~~aL~--~-~p~d~~LL~~Q 240 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE--RD--PE--VAVLLARVYLLMN---EEVEAIRLLNEALK--E-NPQDSELLNLQ 240 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh--cC--Cc--HHHHHHHHHHhcC---cHHHHHHHHHHHHH--h-CCCCHHHHHHH
Confidence 4555566667999999999999982 22 54 4556888888887 67899999999876 2 22356666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...|.+.++.+.|..+.+.+....+. ... +|..|..+|.+.|+++.|+-.++.|..
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~-~f~--------~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS-EFE--------TWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch-hHH--------HHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77788999999999999999874321 111 899999999999999999999998853
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.66 E-value=0.089 Score=55.71 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
......+..|.+.++++.|.+.++.|.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555555555555543
No 77
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.61 E-value=0.008 Score=60.02 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHchhCCCCCCCCHHHH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----------------IPEVAFATFENMEYGEDYMKPDTETY 70 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G----------------~~e~A~~lf~~M~~~~~gi~Pd~~ty 70 (670)
+.|.++=...-+..|.+.|+.-|..+||.||+.+=+.. +.+-|.+++++|. ..|+-||..|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME--~~gV~Pd~Et~ 141 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME--NNGVMPDKETE 141 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH--HcCCCCcHHHH
Confidence 45777777778899999999999999999999876532 3567999999999 89999999999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
..|++.|++.+. -+....++.--|.+
T Consensus 142 ~~ll~iFG~~s~--p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 142 QMLLNIFGRKSH--PMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHhccccH--HHHHHHHHHHHHHH
Confidence 999999999883 23444444444443
No 78
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.072 Score=54.72 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=112.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-CC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g~ 82 (670)
.|++.|++++|++...... +....-.=+..+.+..+++.|...++.|.+ --+-.|-+-|-.++++- +.
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHhcc
Confidence 5788999999998876621 334444444556677889999999999994 34556777677776652 11
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
-+++.+|+-+|++|.+ ...|+..+.+-...++...|++++|..++++...+ +...|++...+|-+--.
T Consensus 186 gek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---------d~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---------DAKDPETLANLIVLALH 253 (299)
T ss_pred chhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHH
Confidence 1269999999999974 58899999999999999999999999999998875 34446666666666666
Q ss_pred cCCHHHH-HHHHHHHhhC
Q 005912 163 EGRIIEL-LEALEAMAKD 179 (670)
Q Consensus 163 ~G~~eeA-~~vf~~M~~~ 179 (670)
.|...++ .+.+.+++..
T Consensus 254 ~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hCCChHHHHHHHHHHHhc
Confidence 7766554 4566666554
No 79
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.51 E-value=2.8 Score=49.78 Aligned_cols=318 Identities=11% Similarity=-0.008 Sum_probs=185.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|++ |++++|.+++.+.... ..-+...|-.|=..|=..|+.+++...+--.. .-.+.|..-|-.+-.-..+.|
T Consensus 149 lfar-g~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~d~e~W~~ladls~~~~-- 221 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPKDYELWKRLADLSEQLG-- 221 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcc--
Confidence 3455 9999999999998865 34467889999999999999999998775544 233556788888888888888
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
.+..|.-+|.+-.+ . -.+++..+---...|-+.|+...|..-|.++....++.+... +-++.-.++..|...
T Consensus 222 -~i~qA~~cy~rAI~--~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er----~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 222 -NINQARYCYSRAIQ--A-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER----IEDLIRRVAHYFITH 293 (895)
T ss_pred -cHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH----HHHHHHHHHHHHHHh
Confidence 78899999988876 2 234555555566778899999999999999887654322110 011333445566666
Q ss_pred CCHHHHHHHHHHHhhCC--CCCCCchHHHHhHHHHHH------HHHHHHHHHHHHc---------------CCCHH----
Q 005912 164 GRIIELLEALEAMAKDN--QPVPPRAMILSRKYRTLV------SSWIEPLQEEAEL---------------GYEID---- 216 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~g--i~i~p~~~i~~~ty~~ll------~a~~~ll~~m~~~---------------G~~pd---- 216 (670)
+.-+.|.+.++.-...+ ..--++.-+ +-.++ +.+...+..+... ...|+
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni----~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNI----LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHH----HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 66677777777655522 111122111 11111 0011112222210 01111
Q ss_pred ----------HHHHHHH--cCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 217 ----------YIARYIS--EGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 217 ----------~i~~~~~--~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
++....| +-.-.+....+........+.|..+ .-|+--+.++|...|+..+|+++|..+.....
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~----~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDD----VDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhh----HHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1111111 1111222222233333333222221 12223456888899999999999988876654
Q ss_pred CccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 285 AVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 285 ~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
. -+...+-.+-+.+. ..+..+.|.+.|+.....---+.....+|-+.+...|+.++|...
T Consensus 446 ~----~~~~vw~~~a~c~~-------------~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 446 Y----QNAFVWYKLARCYM-------------ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred c----cchhhhHHHHHHHH-------------HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 4 23222222222222 334588888888887765432224555566667788998888754
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.15 Score=53.66 Aligned_cols=163 Identities=11% Similarity=-0.036 Sum_probs=103.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 60 ~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
+.+...|--=-+-|=++|.+.| ...+|.+.|..-.. -.|-..||..|-..|.+..++..|+.+|.+-...- +
T Consensus 216 ~~~~~~dwwWk~Q~gkCylrLg---m~r~AekqlqssL~----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P 287 (478)
T KOG1129|consen 216 STGCTLDWWWKQQMGKCYLRLG---MPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-P 287 (478)
T ss_pred cccchHhHHHHHHHHHHHHHhc---ChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-C
Confidence 3344444443477889999999 78899999988766 35777899999999999999999999999877642 2
Q ss_pred CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCC-chHHHHhHHHHHHHHHHHHHHHHHHcCCC-HH
Q 005912 140 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN-QPVPP-RAMILSRKYRTLVSSWIEPLQEEAELGYE-ID 216 (670)
Q Consensus 140 ~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g-i~i~p-~~~i~~~ty~~ll~a~~~ll~~m~~~G~~-pd 216 (670)
-++. ...-+-+.+-.-++.++|.++++...+.. +.+.. -.+-.+|.|..--+-+...+++....|.. |.
T Consensus 288 ~~VT--------~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 288 FDVT--------YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred chhh--------hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 2332 22335566777899999999999887654 11111 11123344555445555555555555554 33
Q ss_pred HHH---HHHHcCCcHHHHHHHHHHh
Q 005912 217 YIA---RYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 217 ~i~---~~~~~~g~~~~a~~lf~~m 238 (670)
.+. -.|--++.++-+..-|++.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHH
Confidence 322 2233344555555445444
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.39 E-value=0.12 Score=63.01 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.-+...++|++..+. .-....|..|...|.+....++|-++|+.|.. .+.-....|...+..+.+.+ +.+.|
T Consensus 1512 ~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K---KF~q~~~vW~~y~~fLl~~n---e~~aa 1583 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLK---KFGQTRKVWIMYADFLLRQN---EAEAA 1583 (1710)
T ss_pred cHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHH---HhcchhhHHHHHHHHHhccc---HHHHH
Confidence 334444455544442 11123445566666666666666666666652 22234555666666666666 55666
Q ss_pred HHHHHHhHhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 90 AELLGMMVEDHKRLQPN---VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd---~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
..++.+-.. ..|- ....+-....-.+.|+.++++.+|+..... |-+..|.||.+|++=.++|..
T Consensus 1584 ~~lL~rAL~----~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1584 RELLKRALK----SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHHHh----hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCH
Confidence 666655433 1232 111122222223566666666666666553 333444788888888888888
Q ss_pred HHHHHHHHHHhhCCC
Q 005912 167 IELLEALEAMAKDNQ 181 (670)
Q Consensus 167 eeA~~vf~~M~~~gi 181 (670)
+.+..+|++....++
T Consensus 1651 ~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888877776
No 82
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.37 E-value=0.062 Score=59.19 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=97.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|+..+...++++.|+.+|+++.+.. |++. -.|...|...++-.+|.+++++... ....|....+.-..-|.+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 3566677889999999999999874 6644 4578888888999999999988772 1233566666666778888
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+ +.+.|+.+..++.. +.|+.+ +|..|..+|.+.|+++.|+..++.+-
T Consensus 248 ~---~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 K---KYELALEIAKKAVE----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred C---CHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8 78999999999976 678765 99999999999999999999988664
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.30 E-value=3 Score=47.98 Aligned_cols=312 Identities=13% Similarity=0.041 Sum_probs=182.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.+.++-|+.+|....+- +.-....|-....+=-..|..+.-..+|.+.. ..+....+.|-...+.+-.+|
T Consensus 525 ~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav---~~~pkae~lwlM~ake~w~ag-- 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV---EQCPKAEILWLMYAKEKWKAG-- 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH---HhCCcchhHHHHHHHHHHhcC--
Confidence 355566666666666665542 33345556555555556677777777777765 334455566766677777777
Q ss_pred ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
++..|..++.+..+ ..| +...|-..+..-..+..++.|+.+|..........- +|.--++.---
T Consensus 599 -dv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR----------v~mKs~~~er~ 663 (913)
T KOG0495|consen 599 -DVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER----------VWMKSANLERY 663 (913)
T ss_pred -CcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch----------hhHHHhHHHHH
Confidence 67777777777665 223 445666677777777788888888877665322111 45555555566
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH---------HHcCCC--HHHH------HHHHHcC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE---------AELGYE--IDYI------ARYISEG 225 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m---------~~~G~~--pd~i------~~~~~~~ 225 (670)
.++.++|.+++++..+.- |+ |+.+.--.-+++++| -..|.. |+.+ ...--+.
T Consensus 664 ld~~eeA~rllEe~lk~f----p~-------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF----PD-------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhhHHHHHHHHHHHHHhC----Cc-------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 677888888887766543 22 222211111122221 113332 4432 2333345
Q ss_pred CcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----ccCCCCHHHHHH
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE----GPA----VLGDVSESDYVR 297 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~----gv~----~~g~~~~~~~~~ 297 (670)
|.+-.|+.+++.-..+. |.. ..-|-..| .+=.|.|+.+.|..+.....+. |+- +...+....-+.
T Consensus 733 ~~~~rAR~ildrarlkN--Pk~-~~lwle~I----r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN--PKN-ALLWLESI----RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred cchhhHHHHHHHHHhcC--CCc-chhHHHHH----HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 56677888887765432 332 24564444 7779999999998887665543 221 111222222334
Q ss_pred HHHHHHHccCCCcccccc------cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChh
Q 005912 298 VEERLKKLIKGPEQHVLK------PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRIN 356 (670)
Q Consensus 298 ~l~~l~k~~~~p~~~~L~------~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~ 356 (670)
.++++.+....| -+++ -....++.|.++|.+-...+--+..+|.-++..+...|.-+
T Consensus 806 s~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 806 SIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 446666654432 1111 24457889999999988877555578888888888888543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.28 E-value=0.61 Score=47.17 Aligned_cols=159 Identities=12% Similarity=0.022 Sum_probs=120.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
+|.+.|++..|..-+++-.+. .| +..+|..+-..|-+.|..+.|.+-|+.-.+ +.|+ ...-|.-=--+|..|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls----l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS----LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCccchhhhhhHHHHhCC
Confidence 688899999999999988874 34 466888888999999999999999988663 2333 233333333457788
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|...|++-..+ ...---..||..+--|..+.|+.+.|...|..-....... |-+.-.+-...-
T Consensus 118 ---~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---------~~~~l~~a~~~~ 184 (250)
T COG3063 118 ---RPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---------PPALLELARLHY 184 (250)
T ss_pred ---ChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---------ChHHHHHHHHHH
Confidence 788999999987773 2222235688888888889999999999999887753221 115667888888
Q ss_pred HcCCHHHHHHHHHHHhhCCC
Q 005912 162 REGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi 181 (670)
+.|++-.|...++....++.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hcccchHHHHHHHHHHhccc
Confidence 99999999999998888774
No 85
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.18 E-value=0.049 Score=57.33 Aligned_cols=136 Identities=7% Similarity=0.033 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
+.+|-.+|++.-|.+.++.|+.+|.+... ...+..++....++|.-++.. +.+.|.++|+.... .+.-+..-
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~~~~~vy~~~A~~E~~~~~----d~~~A~~Ife~glk---~f~~~~~~ 72 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARK-DKRCTYHVYVAYALMEYYCNK----DPKRARKIFERGLK---KFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCS-THHHHHHHHHHHHTCS-----HHHHHHHHHHHHH---HHTT-HHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHH---HCCCCHHH
Confidence 36789999999999999999999999983 344566777777777655433 46779999999876 24556677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
|..-+.-+.+.++.+.|+.+|+..... ++..-. ....|..+|+.=.+.|+++.+..|...+.+.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~-----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISS-LPKEKQ-----SKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHH-----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888889999999999999998764 222110 0117999999999999999999999988775
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.04 E-value=0.95 Score=45.08 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=104.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++..+..-.+.+.. |. . -|...++.+++...++.... .-..|...|..|-..|...|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g- 87 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN- 87 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC-
Confidence 467777777776443322211 10 0 11225566777766666552 12467888999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF-TKYCA--VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~-ak~g~--~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
+.++|+..|..-.+ +.| |...+..+-.++ ...|+ .++|.+++++..+..... +.+++.+-.
T Consensus 88 --~~~~A~~a~~~Al~----l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---------~~al~~LA~ 152 (198)
T PRK10370 88 --DYDNALLAYRQALQ----LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---------VTALMLLAS 152 (198)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---------hhHHHHHHH
Confidence 78899999998876 456 456666666654 67777 599999999998864332 227888999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCC
Q 005912 159 ALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
.+.+.|++++|...|+.+.+..-
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999988763
No 87
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.94 Score=50.00 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=121.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+-|+-.+.+++|...|+.-.+-+ | ....|+.+=+=|....+...|..-+++... =.+.|-..|-.|=++|.-.+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhc
Confidence 34667788999999998877643 3 345566666779999999999999988762 22557788888889998888
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
...-|+-.|++-.. ++| |...|.+|=.+|.+.+++++|...|......+-.. ++.|..|-..|
T Consensus 413 ---Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte---------~~~l~~LakLy 476 (559)
T KOG1155|consen 413 ---MHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE---------GSALVRLAKLY 476 (559)
T ss_pred ---chHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc---------hHHHHHHHHHH
Confidence 78888888888765 666 57899999999999999999999998887754321 12788899999
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 005912 161 CREGRIIELLEALEAMAK 178 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~ 178 (670)
-+.++.++|-..|+.-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999988876554
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.58 Score=54.68 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=110.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC--------CCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM--------KPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi--------~Pd~~tyn~LI~ 75 (670)
.|+-.|+.+.|.+-.+.++.. ..|..|-++|.+..+++-|.-.+..|.+ ..|. .|+ .+=.-+--
T Consensus 737 fyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~-aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKN-ARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhh-hhhHHHHHHHHhCCc-chhhHHHH
Confidence 466678888888877777643 7788899999988888888888877774 1111 121 00000111
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
--.+.| .+++|+.+|.+-++ |..|=.-|-..|.+++|.++-+.=-+-.+. +||--
T Consensus 809 LAieLg---MlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-----------~Tyy~ 863 (1416)
T KOG3617|consen 809 LAIELG---MLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-----------NTYYN 863 (1416)
T ss_pred HHHHHh---hHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccceehh-----------hhHHH
Confidence 113445 67777777777765 344555566678888887775432221111 15666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHcCCcHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA---RYISEGGLTGERK 232 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~---~~~~~~g~~~~a~ 232 (670)
.-.-+-..++++.|++.|+.- +. +.. -..-++......+.+.++.--.+.... .|+-..|.+++|.
T Consensus 864 yA~~Lear~Di~~AleyyEK~---~~---haf-----ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKA---GV---HAF-----EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhc---CC---hHH-----HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 666666677788888887754 21 110 012233333333333344444444332 5666677788887
Q ss_pred HHHHHhc
Q 005912 233 RWVPRRG 239 (670)
Q Consensus 233 ~lf~~m~ 239 (670)
.++....
T Consensus 933 ~~Y~~A~ 939 (1416)
T KOG3617|consen 933 SFYSSAK 939 (1416)
T ss_pred HHHHHhh
Confidence 7776654
No 89
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.98 Score=50.19 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=145.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
.-.|+.-.|..-|+......-.++. .|--+-.+|+...+.++....|+.... -..-.||+ |.-==+.+.-.+ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~n~dv--YyHRgQm~flL~---q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED-LDPENPDV--YYHRGQMRFLLQ---Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh-cCCCCCch--hHhHHHHHHHHH---H
Confidence 3467778888888888775444333 266677789999999999999998873 23334554 332222223333 5
Q ss_pred HHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 86 VQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.++|..=|++-++ +.|. .+.|.-+-.+.-+.+.+++++..|++.+++ .-.||.+||..-..+.-.+
T Consensus 410 ~e~A~aDF~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------FP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 410 YEEAIADFQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---------FPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCchHHHHHHHHHhhHH
Confidence 7888888988866 5563 455555555556899999999999999875 2234448999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
+++.|.+.|+..+.--- .-.-++ ..-..++..++-+++ -.+.+..|..+.....+. .
T Consensus 477 qFd~A~k~YD~ai~LE~--~~~~~~--v~~~plV~Ka~l~~q-----------------wk~d~~~a~~Ll~KA~e~--D 533 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEP--REHLII--VNAAPLVHKALLVLQ-----------------WKEDINQAENLLRKAIEL--D 533 (606)
T ss_pred hHHHHHHHHHHHHhhcc--cccccc--ccchhhhhhhHhhhc-----------------hhhhHHHHHHHHHHHHcc--C
Confidence 99999999997654321 000000 001122222221111 114566666666655432 2
Q ss_pred CCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 245 PDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 245 Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
|.. ...| ++|...-.+.|++++|+++|++-..
T Consensus 534 pkc-e~A~----~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 534 PKC-EQAY----ETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chH-HHHH----HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 1334 3444666889999999999987653
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.99 E-value=1.1 Score=45.20 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
....+-.+...|.+.|+++.|...|++... ...-.|. ...|..+-.+|.+.| +.++|+..|++..+. .|+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~----~p~~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES-RYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRL----HPNH 103 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCC
Confidence 456677777889999999999999999873 1111121 246778888999999 899999999999872 2321
Q ss_pred ----HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHccCCCccccc--------CCCCchHHHHHHHHHHHcCCHH
Q 005912 108 ----KTYALLVECFTKY--------CAVTEAIRHFRALQNYEGGTKVLHN--------EGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 108 ----~Ty~~LL~a~ak~--------g~~d~A~~lf~~M~~~g~~~~v~~~--------~g~~pdtyn~LI~ay~k~G~~e 167 (670)
.++..+-.++.+. |+.+.|.+.|..+.+..+....... ........-.+-..|.+.|++.
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 2344444445444 7789999999998875433211100 0000000113455678899999
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 168 ELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 168 eA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+|...|....+..-. .|... -.+..+... +...|..++|..+++.+...
T Consensus 184 ~A~~~~~~al~~~p~-~~~~~---~a~~~l~~~---------------------~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPD-TPATE---EALARLVEA---------------------YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCC-CcchH---HHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHhh
Confidence 999999998776421 22211 012222222 36677888888888877653
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=2 Score=45.96 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH--------------HHHHHHHHcCCCHHHH---
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI--------------EPLQEEAELGYEIDYI--- 218 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~--------------~ll~~m~~~G~~pd~i--- 218 (670)
||--|.+.+++.+|..+.+++ . |.+|...+ ..+++.++. ..|+....++...|.|
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl---~-PttP~Eyi----lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDL---D-PTTPYEYI----LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred heeeecccccHHHHHHHHhhc---C-CCChHHHH----HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 444567788888888777655 1 33554443 444444332 2233334455544432
Q ss_pred ---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHH
Q 005912 219 ---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDY 295 (670)
Q Consensus 219 ---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~ 295 (670)
..++--.-..++...+.+.+..+-..-|. +.|| +..+++-.|+..+|+++|-......++ +...|
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~--Fn~N-----~AQAk~atgny~eaEelf~~is~~~ik-----n~~~Y 430 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDD--FNLN-----LAQAKLATGNYVEAEELFIRISGPEIK-----NKILY 430 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhH-----HHHHHHHhcChHHHHHHHhhhcChhhh-----hhHHH
Confidence 22222222355556666666555333333 6665 568889999999999999777655555 67788
Q ss_pred HHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHhCChhhhh
Q 005912 296 VRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD--GTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 296 ~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d--~t~~~Ll~a~~~aG~~~eA~ 359 (670)
..++..|.-+.++| +.| |+.|....-|.+ .....+.+-|-+++.+--|-
T Consensus 431 ~s~LArCyi~nkkP------------~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 431 KSMLARCYIRNKKP------------QLA---WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HHHHHHHHHhcCCc------------hHH---HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777655544 222 333334443433 22334455677777765544
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.77 E-value=1.3 Score=49.30 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~ 86 (670)
.|.+++|+..++.+... .+-|++-.......+.+.++..+|.+.|+.+.. ..|+ ...+-.+=.+|.+.| +.
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~~~l~~~~a~all~~g---~~ 390 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA----LDPNSPLLQLNLAQALLKGG---KP 390 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCccHHHHHHHHHHHhcC---Ch
Confidence 34444444444444432 111222223333444444555555555444441 1233 333333444444444 34
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 128 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~ 128 (670)
.+|++++..-.. ...-|...|..|-.+|...|+..++..
T Consensus 391 ~eai~~L~~~~~---~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 391 QEAIRILNRYLF---NDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHHhh---cCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 444444444432 222344444555555555444444433
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.59 E-value=0.24 Score=40.04 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
+..+...|...|++++|..+|++... . ...+...|..+-..|...+ +.++|.+.|..... .. ..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~--~~-~~~~~~~~~ 73 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--L-DPDNADAYYNLAAAYYKLG---KYEEALEDYEKALE--LD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh--CC-CcchhHHHH
Confidence 44556666777888888888877652 1 1223366777777777777 67777777777655 21 223356677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...+...|+.+.|...+....+
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHc
Confidence 77777778888888877776654
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.58 E-value=0.21 Score=40.32 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
+|..+...+.+.| +.++|+.+|.+..+ ..| +...+..+..++...++++.|.+.|..........
T Consensus 2 ~~~~~a~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 67 (100)
T cd00189 2 ALLNLGNLYYKLG---DYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------- 67 (100)
T ss_pred HHHHHHHHHHHHh---cHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------
Confidence 3566777888888 78899999999876 234 34778888889999999999999999887743221
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+.++..+...|...|+.++|...|....+.
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 127888889999999999999999887654
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.57 E-value=5 Score=48.15 Aligned_cols=289 Identities=11% Similarity=0.040 Sum_probs=147.4
Q ss_pred cCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH-H--cCC
Q 005912 8 AGDHSNALEIAYEMEA--AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-R--AES 82 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~--~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~-k--~g~ 82 (670)
.|++..|+.+|..... ....||+..-- =..+.++|+.+.|..-|.+.. +.|+..-++++.-.. . ..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ral------qLdp~~v~alv~L~~~~l~~~d 248 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERAL------QLDPTCVSALVALGEVDLNFND 248 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHH------hcChhhHHHHHHHHHHHHHccc
Confidence 4667777777777432 23455542211 145567788888888887776 333333344433221 1 111
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
-+....++.++..--.. .+ -|.+..+.|-+-|.--|++..+..+...+...-..-.+. ...|--+=++|-.
T Consensus 249 ~~s~~~~~~ll~~ay~~-n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~------aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKE-NN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK------AESFYQLGRSYHA 319 (1018)
T ss_pred hHHHHHHHHHHHHHHhh-cC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHh
Confidence 11233444444433220 12 245666777888888888888888887776642111111 1145567778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP 242 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g 242 (670)
.|++++|+..|.+-.+.. ++..+ +.+-++. .++.+.|..+.+...|+.....
T Consensus 320 ~Gd~ekA~~yY~~s~k~~----~d~~~--l~~~Glg---------------------Qm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKAD----NDNFV--LPLVGLG---------------------QMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred hccHHHHHHHHHHHHccC----CCCcc--ccccchh---------------------HHHHHhchHHHHHHHHHHHHHh-
Confidence 888888888887765553 22211 1223333 2346677888888888887553
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccccc
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLED----GKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKA 318 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G----~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~ 318 (670)
.|+- +--..++ -..|...+ ..++|..++.+-...-.. +...|..+-..+.. .+ .|..
T Consensus 372 -~p~~--~etm~iL---G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-----d~~a~l~laql~e~-~d--~~~s----- 432 (1018)
T KOG2002|consen 372 -LPNN--YETMKIL---GCLYAHSAKKQEKRDKASNVLGKVLEQTPV-----DSEAWLELAQLLEQ-TD--PWAS----- 432 (1018)
T ss_pred -Ccch--HHHHHHH---HhHHHhhhhhhHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHh-cC--hHHH-----
Confidence 2443 2222222 12333332 345565555554433321 22222222111111 11 1111
Q ss_pred CCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCC
Q 005912 319 ASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRP 362 (670)
Q Consensus 319 g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~ 362 (670)
+.--....+.|...|- +|....|.+-....+.|.+.+|...+
T Consensus 433 --L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 433 --LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 1111112234444444 55566777777777777777776543
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.54 E-value=0.35 Score=42.55 Aligned_cols=103 Identities=10% Similarity=-0.013 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
++-.+...+.+.|++++|...|+.+.....+-......+..+...+.+.| +.+.|+..|........+-......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34556667777888888888888876310111111345666777788888 677888888877652111111234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
.+..++.+.|+.+.|.+.+..+....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 66677778888888888888877654
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.47 E-value=1.2 Score=41.77 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+..+-..+.+.| +.++|...|..... +.| +...|..+-.+|...|++++|...|.........
T Consensus 26 ~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-------- 90 (144)
T PRK15359 26 TVYASGYASWQEG---DYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-------- 90 (144)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------
Confidence 3555666777888 78888888888866 344 5677788888888999999999999988874322
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.++++..+-.+|.+.|++++|...|+...+..
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12277788888889999999999999877654
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.42 E-value=0.27 Score=44.91 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+......+...|.+.|++++|...|+... ..+ ..+...|..+-..|.+.| +..+|...|..... .. ..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~--~~-p~~~~ 86 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLA--AYD-PYNSRYWLGLAACCQMLK---EYEEAIDAYALAAA--LD-PDDPR 86 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhC-CCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh--cC-CCChH
Confidence 34556677788889999999999999987 222 346788888888999999 78899999998765 22 33567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
+|..+-.+|...|+.+.|...|....+...
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 777788899999999999999998887654
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.36 E-value=1.3 Score=51.23 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=92.6
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.+..|+.+++.++. .+. -.--|..+..-|+..|+++.|.++|-+.- .++--|.+|.+.|
T Consensus 747 ew~kai~ildniqd--qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 747 EWKKAISILDNIQD--QKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----------------LFKDAIDMYGKAG 805 (1636)
T ss_pred hhhhhHhHHHHhhh--hcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----------------hhHHHHHHHhccc
Confidence 35566677776655 222 23346778888899999999999887532 5788999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCC------------CHHHHHHHHHcCCcHHHHH
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGY------------EIDYIARYISEGGLTGERK 232 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~------------~pd~i~~~~~~~g~~~~a~ 232 (670)
+++.|+++-++... |...+ ..++..-+.|-+.|. .|+.-+.+|.+-|+.+...
T Consensus 806 kw~da~kla~e~~~------~e~t~---------~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG------PEATI---------SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMI 870 (1636)
T ss_pred cHHHHHHHHHHhcC------chhHH---------HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHH
Confidence 99999998776532 33222 122222233444333 2666777888888888777
Q ss_pred HHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005912 233 RWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTL 279 (670)
Q Consensus 233 ~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M 279 (670)
++...-. |+. .+-+-. .+.+.|-..|++..|...|-+.
T Consensus 871 rlv~k~h-----~d~--l~dt~~--~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 871 RLVEKHH-----GDH--LHDTHK--HFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhC-----hhh--hhHHHH--HHHHHHHhccChhHHHHHHHhh
Confidence 7665432 111 211111 1335556677777777666544
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.35 E-value=8.5 Score=45.86 Aligned_cols=314 Identities=11% Similarity=0.010 Sum_probs=196.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|-+.|+.++++..+ |..... +-|..-|-.+-....+.|+++.|.-.|.+..+ .. .++...+--=+.-|-+.|
T Consensus 182 IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~--~~-p~n~~~~~ers~L~~~~G- 255 (895)
T KOG2076|consen 182 IYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ--AN-PSNWELIYERSSLYQKTG- 255 (895)
T ss_pred HHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh--cC-CcchHHHHHHHHHHHHhC-
Confidence 466789999998775 333333 34677888888888899999999999999873 11 233333333455677889
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHccCC-CcccccCCCCchHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYA----LLVECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~----~LL~a~ak~g~~d~A~~lf~~M~~~g~~-~~v~~~~g~~pdtyn~LI 157 (670)
+...|++-|.+|.+ ..-..|..-+- .++..|...+..+.|.+.+......+.. .... .+|+++
T Consensus 256 --~~~~Am~~f~~l~~--~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e--------d~ni~a 323 (895)
T KOG2076|consen 256 --DLKRAMETFLQLLQ--LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE--------DLNILA 323 (895)
T ss_pred --hHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc--------HHHHHH
Confidence 78899999999987 22222333333 3455566777778888888776653221 1111 799999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCC-------------CCCchHH-----HHhHHHH-HHHHHH----------HHHHHH
Q 005912 158 RALCREGRIIELLEALEAMAKDNQP-------------VPPRAMI-----LSRKYRT-LVSSWI----------EPLQEE 208 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~-------------i~p~~~i-----~~~ty~~-ll~a~~----------~ll~~m 208 (670)
..|.+....+.|......+..+... ..++.+. .+|.... -+..|+ -+++..
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence 9999999999999988888662111 0111110 0000111 011111 134445
Q ss_pred HHcCCCHH----H---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 209 AELGYEID----Y---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 209 ~~~G~~pd----~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
.+..+.|. . +..++...|...+|..+|..+.....--+ .+.|-.+ ..+|-..|..+.|.+.|.....
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~----a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKL----ARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 55554433 2 34678899999999999999977533233 3666444 3778889999999999998875
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHH--------hCCCCCH-HHHHHHHHHHHHh
Q 005912 282 EGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD--------AQGLPTD-GTRNVLYQRVQKA 352 (670)
Q Consensus 282 ~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~--------~~Gip~d-~t~~~Ll~a~~~a 352 (670)
.. |.......-+..+.. +.|..++|.+.++.|. ..+.++. ...-...+.+...
T Consensus 478 ~~------p~~~D~Ri~Lasl~~------------~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 478 LA------PDNLDARITLASLYQ------------QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred cC------CCchhhhhhHHHHHH------------hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 43 333333333322222 4566778888887743 3344333 3333455667778
Q ss_pred CChhhhh
Q 005912 353 RRINRSR 359 (670)
Q Consensus 353 G~~~eA~ 359 (670)
|+.++..
T Consensus 540 gk~E~fi 546 (895)
T KOG2076|consen 540 GKREEFI 546 (895)
T ss_pred hhHHHHH
Confidence 8877754
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=2.9 Score=43.31 Aligned_cols=146 Identities=14% Similarity=0.041 Sum_probs=101.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 005912 17 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 96 (670)
Q Consensus 17 lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM 96 (670)
+.+.+.......|......-...|+..|++++|++...... +....-.=+..+.+.. +.+-|.+.++.|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~---r~d~A~~~lk~m 163 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMH---RFDLAEKELKKM 163 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444444444444444444556889999999999987743 2333333344455666 788899999999
Q ss_pred HhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 97 VEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 97 ~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
.+ --+..|.+-|-.++.+ .+.+..|.-+|++|..+- ...|.+-|-+..++...|++++|..+
T Consensus 164 q~-----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---------~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 164 QQ-----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---------PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred Hc-----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---------CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 87 2466788777777764 567899999999998742 22222777888888999999999999
Q ss_pred HHHHhhCCCCCCCchH
Q 005912 173 LEAMAKDNQPVPPRAM 188 (670)
Q Consensus 173 f~~M~~~gi~i~p~~~ 188 (670)
+++...+.-. .|.+.
T Consensus 230 L~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHhccCC-CHHHH
Confidence 9998887643 45543
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.28 E-value=0.44 Score=41.89 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
+|-.+...+.+.| +.++|...|..+...+.+-......+..+..++.+.|+++.|...|+.+.........
T Consensus 4 ~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------ 74 (119)
T TIGR02795 4 AYYDAALLVLKAG---DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK------ 74 (119)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc------
Confidence 4566777788888 7889999999997621111111346667888999999999999999998874322111
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 149 FGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.++..+-.+|.+.|+.++|...|+...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 12267778888999999999999999998875
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.05 E-value=3.2 Score=42.76 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=98.0
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 115 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~ 115 (670)
+-..|--.|+-+.+..+..... .....|...-+..++...++| +...|...|.+... .-.||+.+|+.+=-
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~---~~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~---l~p~d~~~~~~lga 142 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSA---IAYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAAR---LAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHhcccccchHHHHhhhh---ccCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhc---cCCCChhhhhHHHH
Confidence 3444445566666666555543 223456667777999999999 78899999999875 44678999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 116 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 116 a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+|-+.|+++.|..-|.+..+.- +..|..+|.|--.|.-.|+++.|..++..-...+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~---------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA---------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc---------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999988752 2233378889889999999999999999887765
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.04 E-value=1.4 Score=45.37 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-H
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-V 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~ 107 (670)
+....+.+.....+.|++..|..+|.+.. ..-.+|..+||.+=-+|-+.| +.++|-.-|.+-.+ +.|+ .
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~----L~~~~p 168 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLLGAALDQLG---RFDEARRAYRQALE----LAPNEP 168 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHHHHHHHHcc---ChhHHHHHHHHHHH----hccCCc
Confidence 45566778888999999999999999987 334789999999999999999 77788888888766 4554 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..+|.|-..|.-.|+.+.|..++......+..... +-..|.-.....|++++|..+...-
T Consensus 169 ~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~---------v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR---------VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH---------HHHHHHHHHhhcCChHHHHhhcccc
Confidence 66788888999999999999999988765443322 4567888889999999999887654
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.96 E-value=1 Score=49.37 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|....+-|-.-|-+.| +-..|+..+-+--+ -+.-|..|..-|-.-|....-.+++...|+... -+.|+.+
T Consensus 591 dp~ilskl~dlydqeg---dksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~-- 660 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEG---DKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS-- 660 (840)
T ss_pred CHHHHHHHHHHhhccc---chhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH--
Confidence 3444444444444555 33444444433221 222344444444444444444455555554331 2233333
Q ss_pred CCCCchHHHHHHHHH-HHcCCHHHHHHHHHHHhhC
Q 005912 146 EGNFGDPLSLYLRAL-CREGRIIELLEALEAMAKD 179 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay-~k~G~~eeA~~vf~~M~~~ 179 (670)
-|-.||..| -|.|++..|+.+++...++
T Consensus 661 ------kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 ------KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ------HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 677777655 4678888888888887665
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.94 E-value=4.2 Score=49.34 Aligned_cols=241 Identities=7% Similarity=-0.034 Sum_probs=118.2
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----------
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTF---HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT---------- 67 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~---tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~---------- 67 (670)
||..|-..+++++|.++.+.-.+. .|+.. -|..+ .|.+.++...+..+ .+.. -+..+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~---~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLL--NLID---SFSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhh--hhhh---hcccccchhHHHHHHH
Confidence 455666777777777777644332 33332 22333 44455555555444 2220 011111
Q ss_pred ---------HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 68 ---------ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 68 ---------~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
..+-.|-.+|-+.| +.++|..+|+++.+ .. .-|..+.|.+-..|+.. ++++|++++.....
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~--~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--- 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVK--AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY--- 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHh--cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---
Confidence 23344445555556 55666666666665 22 22455556666666666 66666665554433
Q ss_pred CCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHH---cCCCH
Q 005912 139 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAE---LGYEI 215 (670)
Q Consensus 139 ~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~---~G~~p 215 (670)
.|...+++..+.++|.++...... .-+. +..+++.+.. .|.-.
T Consensus 178 --------------------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~-------------f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 178 --------------------RFIKKKQYVGIEEIWSKLVHYNSD-DFDF-------------FLRIERKVLGHREFTRLV 223 (906)
T ss_pred --------------------HHHhhhcchHHHHHHHHHHhcCcc-cchH-------------HHHHHHHHHhhhccchhH
Confidence 245555666666666666655421 1111 1111111111 12222
Q ss_pred HH---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCH
Q 005912 216 DY---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSE 292 (670)
Q Consensus 216 d~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~ 292 (670)
+. +-.+|......+.+..+++.+.++- |+ +++...-++.+....|....+++++ ++..|+. -+.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~-n~~a~~~l~~~y~~kY~~~~~~ee~------l~~s~l~----~~~ 290 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD--NK-NNKAREELIRFYKEKYKDHSLLEDY------LKMSDIG----NNR 290 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--Cc-chhhHHHHHHHHHHHccCcchHHHH------HHHhccc----cCC
Confidence 22 2255778888889999999987652 22 3455555554333333333333332 2334554 223
Q ss_pred HHHHHHHHHHHHccC
Q 005912 293 SDYVRVEERLKKLIK 307 (670)
Q Consensus 293 ~~~~~~l~~l~k~~~ 307 (670)
..+..++..|.+...
T Consensus 291 ~~~~~~i~~fek~i~ 305 (906)
T PRK14720 291 KPVKDCIADFEKNIV 305 (906)
T ss_pred ccHHHHHHHHHHHee
Confidence 444555555555433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.92 E-value=1.2 Score=51.62 Aligned_cols=232 Identities=15% Similarity=0.080 Sum_probs=151.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
..+-..+.+.|....|..+|++.. .|.-+|-+|+..| +...|-.+..+-.+ -.||..-|.++
T Consensus 402 ~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg---~~~kaeei~~q~le----k~~d~~lyc~L 463 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLG---QHGKAEEINRQELE----KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhc---ccchHHHHHHHHhc----CCCcchhHHHh
Confidence 566677889999999999999887 4888999999999 67777777776654 35888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhH
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 193 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~t 193 (670)
....-....+++|.++++....+-- + .++.++ .+.++++++.+.|+.-.+-+. +.+.+
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~------r------~~~~~~---~~~~~fs~~~~hle~sl~~np-lq~~~------ 521 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQ------R------SLALLI---LSNKDFSEADKHLERSLEINP-LQLGT------ 521 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHH------H------hhcccc---ccchhHHHHHHHHHHHhhcCc-cchhH------
Confidence 9888888889999999987664300 0 122221 227889999999986544431 23332
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHH
Q 005912 194 YRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR 273 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~ 273 (670)
|-++--.+ -+.+....+...|..... ..|+. --.||++= .+|.+.|+..+|.
T Consensus 522 wf~~G~~A---------------------Lqlek~q~av~aF~rcvt--L~Pd~-~eaWnNls----~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 522 WFGLGCAA---------------------LQLEKEQAAVKAFHRCVT--LEPDN-AEAWNNLS----TAYIRLKKKKRAF 573 (777)
T ss_pred HHhccHHH---------------------HHHhhhHHHHHHHHHHhh--cCCCc-hhhhhhhh----HHHHHHhhhHHHH
Confidence 22222112 233455666666665533 33543 24687665 8899999999999
Q ss_pred HHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Q 005912 274 KLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL--PTDGTRNVLYQRVQK 351 (670)
Q Consensus 274 ~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi--p~d~t~~~Ll~a~~~ 351 (670)
..+++-.+.+.. +...+.. |..+.-+.|.+++|.+.+.+|..... ..+.+...++.....
T Consensus 574 ~~l~EAlKcn~~-----~w~iWEN-------------ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 574 RKLKEALKCNYQ-----HWQIWEN-------------YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhcCCC-----CCeeeec-------------hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999988776644 1111111 22222366779999999988876554 333455555554443
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.84 E-value=0.56 Score=54.01 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=95.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.+-.....+.+|+.+++.+...... .--|.-+-+.|+..|+++.|.++|-+-. .++--|..|.++|
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~- 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG- 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc-
Confidence 3445566777788887777665332 2336677788888999999999886554 2566788899999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
++..|+++-.+.. |.......|-+-..-+-+.|.+.+|.+++--+.. =..-|.+|-+
T Consensus 806 --kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----------------p~~aiqmydk 862 (1636)
T KOG3616|consen 806 --KWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----------------PDKAIQMYDK 862 (1636)
T ss_pred --cHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----------------chHHHHHHHh
Confidence 7888888776653 3344556666666666778888888877643322 1246788888
Q ss_pred cCCHHHHHHHHHHH
Q 005912 163 EGRIIELLEALEAM 176 (670)
Q Consensus 163 ~G~~eeA~~vf~~M 176 (670)
.|..+...++.+.-
T Consensus 863 ~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKH 876 (1636)
T ss_pred hCcchHHHHHHHHh
Confidence 88888888887754
No 109
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.84 E-value=0.36 Score=44.56 Aligned_cols=90 Identities=6% Similarity=0.056 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchh-------------CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEY-------------GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~-------------~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
|..++.++|.++++.|+++....+.+..=. ....+.|+..+-.+++.+|+.+| +...|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~---~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNG---DIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHH
Confidence 457889999999999999999888876410 14567899999999999999999 78899999998
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 96 MVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 96 M~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
..+. .++..+..+|..|+.=+....+
T Consensus 78 fs~~-Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 78 FSRK-YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHH-cCCCCCHHHHHHHHHHHHHhcC
Confidence 8765 6688889999999876654444
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.84 E-value=0.54 Score=42.84 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|.+.|+.....+ ..+...|..+-..|.+.|+++.|..+|+... .. ...+..+|..+-..|...|
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~-~p~~~~~~~~la~~~~~~g- 99 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA--AL-DPDDPRPYFHAAECLLALG- 99 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CCCChHHHHHHHHHHHHcC-
Confidence 45778999999999999988753 3477888888899999999999999999876 22 2446777888888999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
+.++|+..|....+ +.|+...+.-+.
T Consensus 100 --~~~~A~~~~~~al~----~~p~~~~~~~~~ 125 (135)
T TIGR02552 100 --EPESALKALDLAIE----ICGENPEYSELK 125 (135)
T ss_pred --CHHHHHHHHHHHHH----hccccchHHHHH
Confidence 88999999998876 456665544433
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.77 E-value=0.63 Score=43.74 Aligned_cols=108 Identities=8% Similarity=-0.034 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 16 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 16 ~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
.+|++-.+ +.|+ .+..+-..+...|++++|...|+.... .. ..+...|..+-..+.+.| +.++|+..|..
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~-P~~~~a~~~lg~~~~~~g---~~~~A~~~y~~ 83 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQ-PWSWRAHIALAGTWMMLK---EYTTAINFYGH 83 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CCcHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 34444443 2344 355567788899999999999999872 21 347888999999999999 89999999999
Q ss_pred hHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 96 MVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 96 M~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
... +.| +..++..+-.++...|+.++|...|....+..
T Consensus 84 Al~----l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 84 ALM----LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 987 344 67888888899999999999999999988753
No 112
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.74 E-value=5.5 Score=40.50 Aligned_cols=194 Identities=14% Similarity=0.030 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTY 110 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty 110 (670)
.--|--+|...|+...|..-+++..+ +.|+ .-+|..+-..|-+.| ..+.|.+-|+.-.. +.|+ ..+.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAls----l~p~~GdVL 106 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALS----LAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHh----cCCCccchh
Confidence 34455679999999999999998773 2444 578899999999999 78888888988765 4564 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 190 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~ 190 (670)
|.-=.-+|..|.+++|.+.|+...... .|+..++||..+--+..+.|+.+.|...|..-.+.+-..++.
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P-------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~---- 175 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADP-------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA---- 175 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCC-------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH----
Confidence 665566688999999999999987742 266666699999888899999999999999887765432222
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHH
Q 005912 191 SRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKK 270 (670)
Q Consensus 191 ~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e 270 (670)
.-.+. ......|....|+.+++.....+. ++. -+..-.| ..--+.|+..
T Consensus 176 ---~l~~a---------------------~~~~~~~~y~~Ar~~~~~~~~~~~-~~A--~sL~L~i----riak~~gd~~ 224 (250)
T COG3063 176 ---LLELA---------------------RLHYKAGDYAPARLYLERYQQRGG-AQA--ESLLLGI----RIAKRLGDRA 224 (250)
T ss_pred ---HHHHH---------------------HHHHhcccchHHHHHHHHHHhccc-ccH--HHHHHHH----HHHHHhccHH
Confidence 11111 112345567778888887766554 555 2221112 3334566666
Q ss_pred HHHHHHHHH
Q 005912 271 YHRKLLRTL 279 (670)
Q Consensus 271 ~A~~Lf~~M 279 (670)
-|.+.=..+
T Consensus 225 ~a~~Y~~qL 233 (250)
T COG3063 225 AAQRYQAQL 233 (250)
T ss_pred HHHHHHHHH
Confidence 655544333
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.67 E-value=11 Score=43.57 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQP 182 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~ 182 (670)
.|++|-+-|.+.|.++.|..+|++-.+.-..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 8999999999999999999999987666443
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.64 E-value=14 Score=44.60 Aligned_cols=251 Identities=11% Similarity=0.020 Sum_probs=147.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---Hc---CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA---TC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 77 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya---k~---G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay 77 (670)
++.+.|+.+.|+.-|....+- -| ..-++++...- .. -.+..+..++...-. .. .-|++.-|.|-+-|
T Consensus 208 Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~-~n--~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK-EN--NENPVALNHLANHF 280 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-hc--CCCcHHHHHHHHHH
Confidence 566889999999999887764 34 33333333221 11 234556666655442 22 33566778888899
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQ-P-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~-P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.-.| +...++.+...+.. .... + -...|--+-.+|-..|+++.|...|-+..+......+. .+--
T Consensus 281 yfK~---dy~~v~~la~~ai~--~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------~~~G 347 (1018)
T KOG2002|consen 281 YFKK---DYERVWHLAEHAIK--NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------PLVG 347 (1018)
T ss_pred hhcc---cHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------cccc
Confidence 9999 67788888888766 2211 1 12346677788889999999999998877654333233 3445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHHHH------HHHHHHHHHHHHcC-CCHHH---HHHHHHc
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRTLV------SSWIEPLQEEAELG-YEIDY---IARYISE 224 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~ll------~a~~~ll~~m~~~G-~~pd~---i~~~~~~ 224 (670)
|-.+|.+.|.++.+...|+...+.... .+.+| +++..|...- +.+..++....+.- ...+. +..++-.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 889999999999999999998887531 22222 3444343321 22222222211111 00111 1122222
Q ss_pred CCcHHHHHHHHHHh----ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 225 GGLTGERKRWVPRR----GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 225 ~g~~~~a~~lf~~m----~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
. .......++... ...+-.+.+ ...|+ +...+...|++++|...|..-...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~--E~LNN----vaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPP--EVLNN----VASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCH--HHHHh----HHHHHHHhcChHHHHHHHHHHhhh
Confidence 2 333334443332 233322333 33443 447789999999999999987765
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=1.3 Score=47.37 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHH-HHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI-QAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI-~ay~k~g~~~~~ 86 (670)
.-++++++..+...+..=.--|.+.|| +-.+++-.|++.+|.++|-++. ...+ .|-.+|-+|+ .+|.+++ +.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is--~~~i-kn~~~Y~s~LArCyi~nk---kP 444 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS--GPEI-KNKILYKSMLARCYIRNK---KP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc--Chhh-hhhHHHHHHHHHHHHhcC---Cc
Confidence 345666666666666554444555555 5688889999999999998887 3333 4667776655 6788999 89
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
+.|+.+|-.|-. ..+..+. -.+.+-|-+++.+--|-+.|..+....+.|.-. .|+.+ .+.-++..++....
T Consensus 445 ~lAW~~~lk~~t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW--eGKRG-ACaG~f~~l~~~~~ 516 (557)
T KOG3785|consen 445 QLAWDMMLKTNT-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW--EGKRG-ACAGLFRQLANHKT 516 (557)
T ss_pred hHHHHHHHhcCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc--CCccc-hHHHHHHHHHcCCC
Confidence 999888877643 2233333 345577889999999999999998866555433 55555 45556666654433
Q ss_pred ----HHHHHHHHHHHhh
Q 005912 166 ----IIELLEALEAMAK 178 (670)
Q Consensus 166 ----~eeA~~vf~~M~~ 178 (670)
.....+|..-+..
T Consensus 517 ~~~p~~~~rEVvhllr~ 533 (557)
T KOG3785|consen 517 DPIPISQMREVVHLLRM 533 (557)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 3344445544433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.45 E-value=1.5 Score=43.74 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=93.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH-HHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY-TRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay-~k~g~~~~~ 86 (670)
.++.+++...++...+. -..|...|..|-..|...|+++.|...|++... .. .-|...|..+-.++ .+.|++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~-P~~~~~~~~lA~aL~~~~g~~-~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LR-GENAELYAALATVLYYQAGQH-MT 126 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHhcCCC-Cc
Confidence 45567777777665543 245788889999999999999999999998873 11 23677777777764 676732 15
Q ss_pred HHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 87 QDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
.+|..+|++..+ ..| +..++..+-.++.+.|++++|...++.+.+...
T Consensus 127 ~~A~~~l~~al~----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 127 PQTREMIDKALA----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHH----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 899999999987 345 567888888999999999999999999987543
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.44 E-value=1.4 Score=41.19 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHH--HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNC--VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~--LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..|..++..+ ..++...+...++.+.. . .|+. ..... +-..+...| +.++|...|..... ....|+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~--~--~~~s~ya~~A~l~lA~~~~~~g---~~~~A~~~l~~~~~--~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAK--D--YPSSPYAALAALQLAKAAYEQG---DYDEAKAALEKALA--NAPDPE 82 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHH--H--CCCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh--hCCCHH
Confidence 3455566665 47888888888888873 1 2222 22222 336677788 78888889988887 442232
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 107 V--KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 107 ~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
. ...-.|-..+...|++++|+.++........ .|..+...=+.|.+.|+.++|...|+.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~----------~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIPDEAF----------KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch----------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 2333456777789999999998866332111 122555666778899999999988875
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.44 E-value=0.97 Score=50.20 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFT 118 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a 118 (670)
...|.++.|+..++.+. .. .||. .-+.....-+.+.| ++.+|.+.|+.+.. ..|+ ....-++-.+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~---~~-~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~----l~P~~~~l~~~~a~all 385 (484)
T COG4783 317 YLAGQYDEALKLLQPLI---AA-QPDNPYYLELAGDILLEAN---KAKEAIERLKKALA----LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHhcccchHHHHHHHHH---Hh-CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHh----cCCCccHHHHHHHHHHH
Confidence 35688999999999976 22 4554 44555566678888 89999999999976 5677 455566778899
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+.|++.+|.+++........ ..|+.|..|-.+|...|+..++....-++..
T Consensus 386 ~~g~~~eai~~L~~~~~~~p---------~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDP---------EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hcCChHHHHHHHHHHhhcCC---------CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999988776422 2344899999999999999999988877644
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.41 E-value=5.5 Score=47.41 Aligned_cols=135 Identities=12% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCC
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
...++..+-.|-....+.|..++|..+++...+ +.||. .....+...+.+.+ +.++|+..+++... ..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~----~~ 150 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFS----GG 150 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhh----cC
Confidence 445677788888888899999999999999874 46764 56777888889999 89999999999876 46
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 105 PNVKT-YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 105 Pd~~T-y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|+..+ ...+-.++.+.|+.++|..+|+.....+.. .++++..+=.++-+.|+.++|...|+.-.+..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE---------FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 76554 566667788999999999999999873221 12277788888899999999999999887653
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.34 E-value=17 Score=44.41 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=142.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCC-CCCCHHHHHHHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDY-MKPDTETYNCVIQAY 77 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~g-i~Pd~~tyn~LI~ay 77 (670)
+...|+++.|...++.....--..+ ....+.+-..+...|+++.|...+.+.... ..| ..+-..+++.+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 4578999999999988765311112 134466666778899999999999887620 111 111234455566677
Q ss_pred HHcCCcccHHHHHHHHHHhHhcc--CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC--CCcccccCCCCc
Q 005912 78 TRAESYDRVQDVAELLGMMVEDH--KRLQ--P-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG--GTKVLHNEGNFG 150 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~--~gi~--P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~--~~~v~~~~g~~p 150 (670)
...| +..+|...+.+..... .+.. | ...++..+-..+...|++++|...+........ .+... +
T Consensus 542 ~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~ 612 (903)
T PRK04841 542 FAQG---FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ------L 612 (903)
T ss_pred HHCC---CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH------H
Confidence 8889 7778888777654310 1211 1 234455555667778999999999888765211 11000 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHH
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~ 230 (670)
..+..+-..+...|+.++|...+............... +....... ........|..+.
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~-----~~~~~~~~----------------~~~~~~~~g~~~~ 671 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD-----WIANADKV----------------RLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh-----HhhHHHHH----------------HHHHHHHCCCHHH
Confidence 15566677888999999999999887542110010000 10000000 0112234677888
Q ss_pred HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 231 RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 231 a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
+..++........ ... +... .....+...+...|+.++|..++......
T Consensus 672 A~~~l~~~~~~~~-~~~-~~~~-~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 672 AANWLRQAPKPEF-ANN-HFLQ-GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHhcCCCCC-ccc-hhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888776543211 111 1111 11123456788899999999999887654
No 121
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=8 Score=42.46 Aligned_cols=160 Identities=13% Similarity=-0.006 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-
Q 005912 102 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN- 180 (670)
Q Consensus 102 gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g- 180 (670)
-++-|+.....+-.++...|+.++|...|+......+- .+..| |.|..| +.+.|+.+....+...+....
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M-----D~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM-----DLYAVL---LGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH-----HHHHHH---HHhccCHhhHHHHHHHHHhhhh
Confidence 34445666677777777777777777777776553211 01000 033333 345566655555554443322
Q ss_pred CCCCCchHHHHhHH-HHHHHHHHHHHHHHHHcC--CCHHHHH--HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhh
Q 005912 181 QPVPPRAMILSRKY-RTLVSSWIEPLQEEAELG--YEIDYIA--RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNP 255 (670)
Q Consensus 181 i~i~p~~~i~~~ty-~~ll~a~~~ll~~m~~~G--~~pd~i~--~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~L 255 (670)
....+-.+..+..| ..-.+.+..+...-++.. -.|-.|. .++...++..+|..-|+..... .|. +--+|
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~-rL~~Y--- 371 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APY-RLEIY--- 371 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chh-hHHHH---
Confidence 10011111111011 011111111111111111 0111222 4456677888888888776542 221 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 005912 256 METSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 256 Ie~lv~~~~~~G~~e~A~~Lf~ 277 (670)
++++..|.-.|++.+|.-+-+
T Consensus 372 -~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 372 -RGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred -HHHHHHHHhhchHHHHHHHHH
Confidence 566699999999998865544
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=3.2 Score=43.55 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=79.4
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
.+++..++.+.++.+ . +-+..+-+-.=.-..+.| +.+.|++-|..-.+- +|..| ...||..+.-| +.++
T Consensus 125 e~Dl~g~rsLveQlp--~---en~Ad~~in~gCllykeg---qyEaAvqkFqaAlqv-sGyqp-llAYniALaHy-~~~q 193 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLP--S---ENEADGQINLGCLLYKEG---QYEAAVQKFQAALQV-SGYQP-LLAYNLALAHY-SSRQ 193 (459)
T ss_pred cccCcchHHHHHhcc--C---CCccchhccchheeeccc---cHHHHHHHHHHHHhh-cCCCc-hhHHHHHHHHH-hhhh
Confidence 456666666666665 1 112222222222234677 788999999988774 67766 57888887555 6788
Q ss_pred HHHHHHHHHHHHHccCCCcccccCCCC---c------h----HHHHHHHH-------HHHcCCHHHHHHHHHHHhhC
Q 005912 123 VTEAIRHFRALQNYEGGTKVLHNEGNF---G------D----PLSLYLRA-------LCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 123 ~d~A~~lf~~M~~~g~~~~v~~~~g~~---p------d----tyn~LI~a-------y~k~G~~eeA~~vf~~M~~~ 179 (670)
.+.|+.+..+++.+|+........|.. | + .-+.++.+ +-+.|+.+.|.+.+-.|.-+
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 999999999999988743322111111 1 1 33344443 56789999999998888544
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.93 E-value=2.5 Score=39.47 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHHHHcC
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAYTRAE 81 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~---LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~LI~ay~k~g 81 (670)
..++...+...++.+.... ..+....-+ +-..+...|++++|...|+... .....|+. ...-.|-..+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~--~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL--ANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcC
Confidence 4788899999999988752 223222222 3367888999999999999998 44423322 23444667778888
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~ 132 (670)
+.++|+..+..... .. .....+...-..|.+.|+.++|+..|..
T Consensus 100 ---~~d~Al~~L~~~~~--~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 100 ---QYDEALATLQQIPD--EA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ---CHHHHHHHHHhccC--cc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78899999977543 33 3345666777889999999999999875
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.80 E-value=0.34 Score=38.67 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=46.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 75 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ 75 (670)
.+.|++++|+++|+.+.... +-|...+-.|..+|.+.|++++|..+|+.+.. ..|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHHHHHHh
Confidence 46788888888888887642 22666677788888888888888888888873 2566666665543
No 125
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.67 E-value=0.78 Score=48.27 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.+|..+++..-+.+ ..+.|..+|.+-+.. ..+....+...++|.- ...++.+.|..||+...+. +
T Consensus 1 t~v~i~~m~~~~r~~---g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~---------f 66 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTE---GIEAARKVFKRARKD-KRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK---------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC-CCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH---------H
T ss_pred CHHHHHHHHHHHHhC---ChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH---------C
Confidence 357999999999988 799999999999862 3345555555555543 3357778899999998875 3
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+..++.|...|+.+.+.|+.+.|..+|+.....
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 334448999999999999999999999998765
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.59 E-value=1.8 Score=48.80 Aligned_cols=153 Identities=9% Similarity=0.063 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHH
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.+.....++++...-..--+.+|-.+|+.--|..-+..|+.+|.+.. ..+..+ ++..++++|.-||... -.-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR--~~~r~~hhVfVa~A~mEy~cskD----~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR--EDKRTRHHVFVAAALMEYYCSKD----KETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh--hccCCcchhhHHHHHHHHHhcCC----hhHH
Confidence 44555566665544332334678889999999999999999999999 677777 8999999999999886 6789
Q ss_pred HHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 90 AELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
+++|+-=.. --+|.-.| ..-+.-+.+.++-..++.+|+......++++-.- ..|..+|+-=..-|++..
T Consensus 421 frIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~------~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 421 FRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK------EIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH------HHHHHHHHHHHhcccHHH
Confidence 999986333 13555555 4466677888999999999999988644432111 189999999999999999
Q ss_pred HHHHHHHHhhC
Q 005912 169 LLEALEAMAKD 179 (670)
Q Consensus 169 A~~vf~~M~~~ 179 (670)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99988877543
No 127
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=19 Score=41.04 Aligned_cols=262 Identities=8% Similarity=-0.005 Sum_probs=149.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+-..+++.+.+.+++...+. ..++...+-.=|..+...|+..+-+.+=.+|.. ...-..+||=++=--|-.-|
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~--- 326 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIG--- 326 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhc---
Confidence 44578889999999887654 334444455556677777776665555555551 12234677877777777777
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
+..+|.+.|.+-..-...+-|- |-..-.+|+-.|.-++|...+...-+.-.+..+ |..|..| -|.+.+
T Consensus 327 k~seARry~SKat~lD~~fgpa---Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-------P~LYlgm--ey~~t~ 394 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPA---WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-------PSLYLGM--EYMRTN 394 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHH---HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-------hHHHHHH--HHHHhc
Confidence 6778888887754311334443 444456677778888888877766654333222 1123222 366778
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchH----HHHhHHHHHHHHHHHHHHHHH----HcC-----CCHH--HHHHHHHcCCcHH
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAM----ILSRKYRTLVSSWIEPLQEEA----ELG-----YEID--YIARYISEGGLTG 229 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~----i~~~ty~~ll~a~~~ll~~m~----~~G-----~~pd--~i~~~~~~~g~~~ 229 (670)
+++-|.+.|.+-..... -.|-.. ...|++.....+ ...|+... ..+ ..|- .+-..+.+.+..+
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A-~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEA-LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHH-HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 88888888876544321 111100 122333333322 22222111 000 1121 1224577888899
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 300 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~ 300 (670)
+|...|+.-.... .-+. -+|+++= -.|...|+++.|...|++-. .+. |+......++.
T Consensus 473 eAI~~~q~aL~l~-~k~~--~~~asig----~iy~llgnld~Aid~fhKaL--~l~----p~n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDA--STHASIG----YIYHLLGNLDKAIDHFHKAL--ALK----PDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcC-CCch--hHHHHHH----HHHHHhcChHHHHHHHHHHH--hcC----CccHHHHHHHH
Confidence 9999998865431 1233 3333332 45678899999999999765 444 55555555554
No 128
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.05 E-value=0.45 Score=49.34 Aligned_cols=104 Identities=14% Similarity=0.236 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC------------c-ccHHHHH
Q 005912 29 TTFHFNHLLSCQAT-----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES------------Y-DRVQDVA 90 (670)
Q Consensus 29 d~~tyn~LI~~yak-----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~------------~-~~~~eAl 90 (670)
|-.+|-+.+..|.. .+.++-...-++.|. +.|++.|..+|+.||+-+-+..- | .+-.-++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44455555555442 245555566666666 66777777777777665543311 1 1345688
Q ss_pred HHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHc
Q 005912 91 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT-EAIRHFRALQNY 136 (670)
Q Consensus 91 ~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d-~A~~lf~~M~~~ 136 (670)
.++++|.. -|+.||..+=..|+++|.+-+-.- +..++.-.|-+.
T Consensus 144 ~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 144 KVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred HHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhh
Confidence 99999998 899999999999999999888754 566776666653
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.95 E-value=15 Score=39.25 Aligned_cols=195 Identities=14% Similarity=-0.004 Sum_probs=115.8
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHHHHH-HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAG-RMATTFHFN-HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn-~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
|...|+.+.+...+....... -.++...-. .....+...|++++|..++++... . ...|...++. ..++...|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~-~P~~~~a~~~-~~~~~~~~~ 91 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--D-YPRDLLALKL-HLGAFGLGD 91 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CCCcHHHHHH-hHHHHHhcc
Confidence 344566777666665544321 122322222 223345678999999999998762 1 1234445553 223333332
Q ss_pred c-ccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 83 Y-DRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 83 ~-~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+ +....+.+.+.. . ....|+. ..+..+-..+...|++++|.+.++......... .. .+..+-..|
T Consensus 92 ~~~~~~~~~~~l~~--~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~--------~~~~la~i~ 158 (355)
T cd05804 92 FSGMRDHVARVLPL--W--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AW--------AVHAVAHVL 158 (355)
T ss_pred cccCchhHHHHHhc--c--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cH--------HHHHHHHHH
Confidence 1 134444444443 2 3334543 444566678889999999999999998754322 11 678888899
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...|++++|...++........ .+...+. .|..+ ..++...|..++|..+++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~--~~~~l---------------------a~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDC-SSMLRGH--NWWHL---------------------ALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCC-CcchhHH--HHHHH---------------------HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999987664321 2222110 01111 1234667899999999998743
No 130
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.83 E-value=23 Score=41.16 Aligned_cols=336 Identities=9% Similarity=0.009 Sum_probs=163.0
Q ss_pred hcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC--CHHHHHHHHHHHHHc
Q 005912 7 KAGDHSNALEIAYE----MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRA 80 (670)
Q Consensus 7 k~G~~~~Al~lf~~----M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P--d~~tyn~LI~ay~k~ 80 (670)
.+|+.+....+.++ +...|+..|..-|-.=-..|-+.|.+-.+..+..... .-|++- --.||+.--..|.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi--gigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI--GIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH--hhccccchhHhHHhhhHHHHHhc
Confidence 35666666666543 4456777777777555555666666666666665555 344332 235566666666666
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
+ -.+-|..+|....+ +-| +...|.-+...=-..|..+.-..+|......-....+ .|-....-
T Consensus 530 ~---~~~carAVya~alq----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~---------lwlM~ake 593 (913)
T KOG0495|consen 530 P---AIECARAVYAHALQ----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI---------LWLMYAKE 593 (913)
T ss_pred c---hHHHHHHHHHHHHh----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh---------HHHHHHHH
Confidence 6 44455555555443 222 3344555544445556666666666555543221111 34444444
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHH---------HHHHHHHHHHHcCCCHHHHH---HHHHcCCc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS---------SWIEPLQEEAELGYEIDYIA---RYISEGGL 227 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~---------a~~~ll~~m~~~G~~pd~i~---~~~~~~g~ 227 (670)
+-..|++..|..++....+.+- .+.-| +-.-+. .+-.+|......+-.+.+.. .+-..-+.
T Consensus 594 ~w~agdv~~ar~il~~af~~~p---nseei----wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP---NSEEI----WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC---CcHHH----HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 5555555555555555544431 11111 111111 11111111111111111110 11122345
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCccCCCCHHHHHHHHHHHHH
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ---NEGPAVLGDVSESDYVRVEERLKK 304 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~---~~gv~~~g~~~~~~~~~~l~~l~k 304 (670)
+++|.++++...+. -|+. . +.|...|++.+-..-++.-+ ..|.+.. |++.-+-.++..+..
T Consensus 667 ~eeA~rllEe~lk~--fp~f--~----------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleE 730 (913)
T KOG0495|consen 667 VEEALRLLEEALKS--FPDF--H----------KLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHHHHHHHHHHHh--CCch--H----------HHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHH
Confidence 66676666555432 1332 1 22233333332222222111 2344321 333333333333332
Q ss_pred ccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q 005912 305 LIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 384 (670)
Q Consensus 305 ~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~ 384 (670)
+.|..-.|..++++-+-.+-.+..-|...|+.=.++|..++|.. ++.
T Consensus 731 ------------k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~---------------------lma 777 (913)
T KOG0495|consen 731 ------------KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL---------------------LMA 777 (913)
T ss_pred ------------HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH---------------------HHH
Confidence 45567778888877666553445788889999999999887753 333
Q ss_pred h-cccCCCcHhHHHHhhhccCcCCCCCcccccc
Q 005912 385 R-IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMD 416 (670)
Q Consensus 385 ~-~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~ 416 (670)
+ +..-|.++..|....--..+-.+...+.+..
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 3 4444567778876555445445554555443
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.81 E-value=1.6 Score=47.55 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=60.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESY 83 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~ 83 (670)
+...|+++.|+++|++..+.. .-+...|..+-.+|.+.|++++|...+++... +.| +...|..+-.+|.+.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~~~~lg-- 84 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLAKAYLRKGTACMKLE-- 84 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhC--
Confidence 445677777777777766532 22455566666677777777777777777652 123 4556666666777777
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
+.++|+..|++..+ +.|+...+...+
T Consensus 85 -~~~eA~~~~~~al~----l~P~~~~~~~~l 110 (356)
T PLN03088 85 -EYQTAKAALEKGAS----LAPGDSRFTKLI 110 (356)
T ss_pred -CHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 66677777777655 445554444443
No 132
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=23 Score=40.36 Aligned_cols=280 Identities=8% Similarity=-0.036 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
|+...-+-..-|-.++++.+..++++.... ...++...+..=|.++...| +..+-+.+=.+|+.+ .+-..+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~---~~n~Lf~lsh~LV~~---yP~~a~ 313 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE---KDPFHLPCLPLHIACLYELG---KSNKLFLLSHKLVDL---YPSKAL 313 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhc---ccchHHHHHHHHHHh---CCCCCc
Confidence 444445555667788999999999999873 23456666777788999999 555666666777763 223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCCCCCCc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK--DNQPVPPR 186 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~--~gi~i~p~ 186 (670)
+|-++-.-|--.|...+|++.|...... .+..+..|-.+=..|+-.|.-++|+..+..--+ .|.- .|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~ 383 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPS 383 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chH
Confidence 8877777777889999999999876542 222223788899999999999999988765433 2321 243
Q ss_pred hHHHHhHHHHH--HHHHHHHHHHHHHcCCCHHH---H---HHHHHcCCcHHHHHHHHHHhcc--CCCCCCcccchhhhhH
Q 005912 187 AMILSRKYRTL--VSSWIEPLQEEAELGYEIDY---I---ARYISEGGLTGERKRWVPRRGK--TPLDPDAVGFIYSNPM 256 (670)
Q Consensus 187 ~~i~~~ty~~l--l~a~~~ll~~m~~~G~~pd~---i---~~~~~~~g~~~~a~~lf~~m~~--~gi~Pd~d~~ty~~LI 256 (670)
-.+ +.-|... +.-+-+.+ +...++.|+. . -...-+.+...+|..+|+.-.. ..+.+.. .+|-.+.
T Consensus 384 LYl-gmey~~t~n~kLAe~Ff--~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--~~w~p~~ 458 (611)
T KOG1173|consen 384 LYL-GMEYMRTNNLKLAEKFF--KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--IFWEPTL 458 (611)
T ss_pred HHH-HHHHHHhccHHHHHHHH--HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--cchhHHH
Confidence 221 1111110 11111111 2233444431 1 1112234567888888877652 1222222 3466666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC
Q 005912 257 ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL 336 (670)
Q Consensus 257 e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi 336 (670)
..+=..|.+.+..++|+..|+.-....-+ +..++.. +-.+-. ..|.++.|...|.+- .++
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-----~~~~~as-ig~iy~------------llgnld~Aid~fhKa--L~l 518 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPK-----DASTHAS-IGYIYH------------LLGNLDKAIDHFHKA--LAL 518 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCC-----chhHHHH-HHHHHH------------HhcChHHHHHHHHHH--Hhc
Confidence 66668999999999999999987765443 3333333 211111 235578888888864 446
Q ss_pred -CCHHHHHHHHHHHHHh
Q 005912 337 -PTDGTRNVLYQRVQKA 352 (670)
Q Consensus 337 -p~d~t~~~Ll~a~~~a 352 (670)
|++.+-..++..+...
T Consensus 519 ~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIED 535 (611)
T ss_pred CCccHHHHHHHHHHHHh
Confidence 6666666677655444
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=92.45 E-value=2.5 Score=49.11 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+...|-...|+.+|+++.- |--+|.+|+..|+..+|..+..+-. + -.||..-|.++-.......
T Consensus 407 ll~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~l--e--k~~d~~lyc~LGDv~~d~s-- 471 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQEL--E--KDPDPRLYCLLGDVLHDPS-- 471 (777)
T ss_pred HHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHh--c--CCCcchhHHHhhhhccChH--
Confidence 45566777777777776643 5667777777777777777666655 2 2466666666555544443
Q ss_pred ccHHHHHHHHHHhHhc---c---------------------CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 84 DRVQDVAELLGMMVED---H---------------------KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~---~---------------------~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
-.+.|+++++..... + -.+.| -..||-.+=.+..+.+++..|.+.|.......+
T Consensus 472 -~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 472 -LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred -HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 344555555543220 0 00011 112333333333455666666666655443211
Q ss_pred CCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 139 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 139 ~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.. -. .||.+=.+|.+.|+..+|+..+.+-.+-+
T Consensus 551 d~-~e--------aWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 551 DN-AE--------AWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred Cc-hh--------hhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 10 00 67777777777777777777777766655
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.37 E-value=4.4 Score=47.74 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=87.4
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC---
Q 005912 29 TTFHFNHLLS--CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL--- 103 (670)
Q Consensus 29 d~~tyn~LI~--~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi--- 103 (670)
|..|-.++|+ .|...|+.+.|++-.+.++ +-+.|..|-+.|++.. +++-|.-.+..|..- +|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~---RLDVAkVClGhm~~a-RgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTR---RLDVAKVCLGHMKNA-RGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhc---cccHHHHhhhhhhhh-hhHHHH
Confidence 6777788886 4888999999998888777 5678999999999998 677777777777542 221
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 104 -----QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 104 -----~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.|+ .+=.-+.-.....|.+++|+.+++..++ |..|=..|-..|++++|+++-+.
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----------------~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----------------YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHhcccHHHHHHHHhh
Confidence 232 2222222234578999999999999887 55666778889999999998764
No 135
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.33 E-value=3 Score=44.79 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
.+.+..|.-+...|....|.++-.+.+ .||..-|-..|.+|+..+ ++++-.++- . ..-.| +-|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~---~w~eL~~fa---~---skKsP--IGy 240 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENK---DWDELEKFA---K---SKKSP--IGY 240 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcC---CHHHHHHHH---h---CCCCC--CCh
Confidence 355777788888999999999999998 899999999999999999 555533332 2 22233 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
-.++.+|.+.|+..+|..+...+ ++.--+..|.++|.+.+|-+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKI------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999887762 467889999999999998765
No 136
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.32 E-value=1.5 Score=40.42 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh-------------ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-------------DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~-------------~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~ 132 (670)
|..++.++|.++++.| +++....+....-. ....+.|+..+..+++.+|+.++++..|.++.+.
T Consensus 1 de~~~~~ii~al~r~g---~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSG---QLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcC---CHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5678999999999999 56665555553311 0145679999999999999999999999999999
Q ss_pred HHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 133 LQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 133 M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
..+.-. ..+. ..+|..|+.=....
T Consensus 78 fs~~Y~-I~i~------~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 78 FSRKYP-IPIP------KEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHcC-CCCC------HHHHHHHHHHHHHh
Confidence 887422 1111 11777777654443
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.11 E-value=0.55 Score=39.50 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCccc
Q 005912 8 AGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~-Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~ 85 (670)
.|+++.|+.+|+++.+..-. |+...+-.+-.+|.+.|++++|..+++... +.|.. ...-.+-.+|.+.| +
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-----~~~~~~~~~~l~a~~~~~l~---~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-----LDPSNPDIHYLLARCLLKLG---K 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-----HHHCHHHHHHHHHHHHHHTT----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhC---C
Confidence 57888999999988875321 233344447888888999999999997733 12332 33334456677888 6
Q ss_pred HHHHHHHHHH
Q 005912 86 VQDVAELLGM 95 (670)
Q Consensus 86 ~~eAl~lf~e 95 (670)
.++|++.|.+
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7788887764
No 138
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=19 Score=37.97 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=107.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHH-HHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV-IQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~L-I~ay~k~ 80 (670)
..+.+..++++|++++..-.++ .| +....+.|-.+|-+..++..|-..++++.+ ..|-..-|..- -.++.++
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHh
Confidence 3457778889999988776664 34 677778888888899999999999998874 35555555432 2344455
Q ss_pred CCcccHHHHHHHHHHhHhcc----------------CC----------CCCCHHHHHHHHH-HH--HHcCCHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDH----------------KR----------LQPNVKTYALLVE-CF--TKYCAVTEAIRHFR 131 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~----------------~g----------i~Pd~~Ty~~LL~-a~--ak~g~~d~A~~lf~ 131 (670)
+ ...+|+++...|.... .+ -.|...+-..+++ +| -+.|+.+.|.+-|.
T Consensus 92 ~---i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 C---IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred c---ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5 4556776666664310 00 0121111111221 22 37899999999998
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 185 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p 185 (670)
...+.+.-...+ .||.-+..| +.|+...|++...++.++|++--|
T Consensus 169 aAlqvsGyqpll--------AYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 169 AALQVSGYQPLL--------AYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHhhcCCCchh--------HHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 887754333233 788877666 457899999999999999875333
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.77 E-value=0.27 Score=41.43 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYC 121 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g 121 (670)
.|+++.|..+|+++.. ...-.|+...|-.+-.+|.+.| +.++|+.+++. .. +.|.. ...-.+-.+|.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~-~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE-LDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHH-HHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhC
Confidence 5789999999999984 1111225556666899999999 88999999988 32 12332 33345567888999
Q ss_pred CHHHHHHHHHH
Q 005912 122 AVTEAIRHFRA 132 (670)
Q Consensus 122 ~~d~A~~lf~~ 132 (670)
+.++|..+|.+
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.56 E-value=6.5 Score=37.82 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-C-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-D-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
....|..+-..|.+.|++++|...|++.. .....+ + ...|..+-..|.+.| +.++|+..|.+... +.|+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~----~~p~ 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALE----LNPK 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCcc
Confidence 45567888888999999999999999887 222222 1 467889999999999 78899999998876 3453
Q ss_pred -HHHHHHHHHHHHHcCC
Q 005912 107 -VKTYALLVECFTKYCA 122 (670)
Q Consensus 107 -~~Ty~~LL~a~ak~g~ 122 (670)
...+..+...|...|+
T Consensus 105 ~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE 121 (172)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 5556666667777666
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.32 E-value=5.2 Score=44.60 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.+...|+.+-.+|.+.| +.++|+..|++-.+ +.|+. .+|..+-.+|++.|++++|...++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKG---RVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788999999999999 88999999999876 56874 46999999999999999999999998874
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.27 E-value=16 Score=41.55 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=85.4
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVT 124 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d 124 (670)
.+.....+++... ...+.|+. +|..+|+.--+.. .+..|..+|.+.++ .+..+ +++.++++|.-|| .++..
T Consensus 347 ~~~~~~~~~~ll~-~~~~~~tL-v~~~~mn~irR~e---GlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy~c-skD~~ 418 (656)
T KOG1914|consen 347 EKKVHEIYNKLLK-IEDIDLTL-VYCQYMNFIRRAE---GLKAARKIFKKARE--DKRTRHHVFVAAALMEYYC-SKDKE 418 (656)
T ss_pred hhhhHHHHHHHHh-hhccCCce-ehhHHHHHHHHhh---hHHHHHHHHHHHhh--ccCCcchhhHHHHHHHHHh-cCChh
Confidence 4555666666653 33344543 5666777766665 58899999999998 56666 7888888888776 56678
Q ss_pred HHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 125 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 125 ~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-|.++|+-=.++ +|..|.--+..++-+...|+-..+..+|+....+++
T Consensus 419 ~AfrIFeLGLkk---------f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 419 TAFRIFELGLKK---------FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHHHHHHHh---------cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 899999864443 333333456788888999999999999999988855
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.22 E-value=5.5 Score=47.38 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
...+.|++++|+.+++...+ +.|+ ......+...+.+.+++++|+..+++... ..|+ ....+.+=.++.+.|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999987 4675 44557778889999999999999999873 2454 556677777888999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+.++|..+|++... . .|+ ..++..+-.++-+.|+.++|...|+.....
T Consensus 169 ---~~~~A~~~y~~~~~--~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 169 ---QSEQADACFERLSR--Q--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---chHHHHHHHHHHHh--c--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999986 2 344 688889999999999999999999998764
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=33 Score=39.42 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHH--------HHHHCCCCc--------------cCCCCHHHHHHHHHHHHHccCC-Ccccccc
Q 005912 259 SFKQRCLEDGKKYHRKLLR--------TLQNEGPAV--------------LGDVSESDYVRVEERLKKLIKG-PEQHVLK 315 (670)
Q Consensus 259 lv~~~~~~G~~e~A~~Lf~--------~M~~~gv~~--------------~g~~~~~~~~~~l~~l~k~~~~-p~~~~L~ 315 (670)
++......|+++.|.+++. .+.+.+..| .+......+..++..+.+...+ +.-..+.
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 4467788999999999998 444444332 1112233333444444433322 1111111
Q ss_pred -------cccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCCCCcc
Q 005912 316 -------PKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWVPPVE 369 (670)
Q Consensus 316 -------~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e 369 (670)
-++|..++|..+++++.... |++ .+...++.+|++-. .+.|.++...+|+..
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKLPPLK 521 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcCCCcc
Confidence 37799999999999999865 455 78888999988764 567776666666554
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.89 E-value=5.4 Score=38.36 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd--~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
.|.+.|++++|...|++....+-.+. ...+..+-..|.+.|+++.|...|++... +.| +...|..+-..|...
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHc
Confidence 46678999999999998876543322 46788888999999999999999998872 233 456677777777777
Q ss_pred C
Q 005912 81 E 81 (670)
Q Consensus 81 g 81 (670)
|
T Consensus 120 g 120 (172)
T PRK02603 120 G 120 (172)
T ss_pred C
Confidence 6
No 146
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=32 Score=38.79 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=131.0
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF 117 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ 117 (670)
+.-+|+.-.|..-|+.... . .|-..+ |--+-..|...+ +-++.+..|.+-.. +-| |.-+|..--..+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~--l--~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~----ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIK--L--DPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAED----LDPENPDVYYHRGQMR 404 (606)
T ss_pred hhhcCCchhhhhhHHHHHh--c--CcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHh----cCCCCCchhHhHHHHH
Confidence 4457888899999988772 2 222222 777777888888 78888889988755 333 345666666666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL 197 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l 197 (670)
.-.+++++|..=|+..++..+.... .|--+--+.-|.+++++++..|++.+++-. -.|.. |+-.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~---------~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Ev------y~~f 468 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAY---------AYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEV------YNLF 468 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchH------HHHH
Confidence 6677888888888887764322111 343444444578899999999999887742 12222 2222
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-----CCCCCcccchhhhhHHHHHHHHHhcCCHHHH
Q 005912 198 VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-----PLDPDAVGFIYSNPMETSFKQRCLEDGKKYH 272 (670)
Q Consensus 198 l~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-----gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A 272 (670)
... +...+..+.|...|+..... ++-.++-.++--.+| .+-=.+++..|
T Consensus 469 Aei---------------------LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-----~~qwk~d~~~a 522 (606)
T KOG0547|consen 469 AEI---------------------LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-----VLQWKEDINQA 522 (606)
T ss_pred HHH---------------------HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-----hhchhhhHHHH
Confidence 222 24445677777777665431 111111112111111 11123778888
Q ss_pred HHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh
Q 005912 273 RKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA 333 (670)
Q Consensus 273 ~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~ 333 (670)
.+|++.-.+..-+ + ...| ..+..+ .-+.|..++|.++|++-..
T Consensus 523 ~~Ll~KA~e~Dpk----c-e~A~----~tlaq~---------~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 523 ENLLRKAIELDPK----C-EQAY----ETLAQF---------ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHccCch----H-HHHH----HHHHHH---------HHHHhhHHHHHHHHHHHHH
Confidence 8888777655433 2 1122 222221 1367789999999987654
No 147
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.48 E-value=6.4 Score=41.88 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=85.0
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHH--HHHHHHHcCCc-ccHHHHHHHHHHhHhccCCC-CCCHHHHHHHHHHHHHcC
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNC--VIQAYTRAESY-DRVQDVAELLGMMVEDHKRL-QPNVKTYALLVECFTKYC 121 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~--LI~ay~k~g~~-~~~~eAl~lf~eM~~~~~gi-~Pd~~Ty~~LL~a~ak~g 121 (670)
+.+...+++.|. +.|+..+..+|-+ +|...+...++ ..+..|..+|+.|+++|..+ .++.++|+.||.. ...
T Consensus 78 ~~~~~~~y~~L~--~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLK--EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHH--HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 455677889999 8999999888766 44444333322 24778999999999976554 4678888888766 333
Q ss_pred C----HHHHHHHHHHHHHccCCC--cccccCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHhhCCCCCCCch
Q 005912 122 A----VTEAIRHFRALQNYEGGT--KVLHNEGNFGDPLSLYLRALCREGR--IIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 122 ~----~d~A~~lf~~M~~~g~~~--~v~~~~g~~pdtyn~LI~ay~k~G~--~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
+ .+.++++|..+.+.|+.. ++. ..+.++...--... +..+.++++.+.++|+++.+..
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ--------~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQ--------FLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHH--------HHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 3 356677888887766532 111 23333333221111 5578899999999999766654
No 148
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.31 E-value=3.4 Score=45.64 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~g-i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
-++.|.++|+.--|..-++.|+.+|-+.. ..+ +.+++..|+++|.-|+... ..-|.++|+-=.. -.||.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r--k~~~~~h~vyi~~A~~E~~~~~d----~~ta~~ifelGl~----~f~d~ 465 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLR--KEGIVGHHVYIYCAFIEYYATGD----RATAYNIFELGLL----KFPDS 465 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHh--ccCCCCcceeeeHHHHHHHhcCC----cchHHHHHHHHHH----hCCCc
Confidence 35678889999999999999999999998 666 7899999999999999876 5678899975332 24776
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 108 KTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 108 ~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
..| .-.+.-+...++-..|+.+|+..+.+--...+. ..|-.+|+-=..-|++..|..+=+.|...
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k-------~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK-------RIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh-------HHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 666 445666778899999999999544321111110 06888888888888888888777777654
No 149
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.01 E-value=1.5 Score=45.73 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----------------HHHHHHHHHchhCCCCCCCCHHHHHH
Q 005912 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP----------------EVAFATFENMEYGEDYMKPDTETYNC 72 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~----------------e~A~~lf~~M~~~~~gi~Pd~~tyn~ 72 (670)
+.++--..-++.|++.|+.-|..+|+.||+.+-+...+ +-+..++++|. ..|+-||-.+=-+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME--~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQME--WHGVMPDKEIEDI 163 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHH--HcCCCCchHHHHH
Confidence 33444444456677777777777777777777666532 23567777777 6777777777777
Q ss_pred HHHHHHHcC
Q 005912 73 VIQAYTRAE 81 (670)
Q Consensus 73 LI~ay~k~g 81 (670)
||++|++.|
T Consensus 164 lvn~FGr~~ 172 (406)
T KOG3941|consen 164 LVNAFGRWN 172 (406)
T ss_pred HHHHhcccc
Confidence 777777776
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.98 E-value=55 Score=40.00 Aligned_cols=309 Identities=11% Similarity=-0.041 Sum_probs=164.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC--C----CCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAG--R----MATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNC 72 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G--v----~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~ 72 (670)
+...|++++|..++......- . .|.. .....+-..+...|+++.|...+++... .--..+ ...++.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA--ELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 456788999998888765421 0 1111 1112222345678999999999988652 111112 234566
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ-P--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~-P--d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
+-..+...| +.++|...+.+......... + -..++..+-..+...|+++.|...+.+.....-.... ...
T Consensus 497 lg~~~~~~G---~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----~~~ 569 (903)
T PRK04841 497 LGEVHHCKG---ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL----EQL 569 (903)
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----ccc
Confidence 666677788 78888888887754111111 1 1234555667788999999999998876652110000 000
Q ss_pred c-h--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 150 G-D--PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 150 p-d--tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
+ . .+..+-..+...|++++|...+.+.....-...+.... ..+..+ .......|
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~l---------------------a~~~~~~G 626 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL--QCLAML---------------------AKISLARG 626 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH--HHHHHH---------------------HHHHHHcC
Confidence 0 0 34455566777899999999998765432111221111 011111 11124456
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchh-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIY-SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKL 305 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty-~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~ 305 (670)
..++|...+.......-.... +..+ ..+.......+...|+.+.|..++......... ...... .....+..
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~----~~~~~~-~~~~~~a~- 699 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA----NNHFLQ-GQWRNIAR- 699 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc----cchhHH-HHHHHHHH-
Confidence 777777776665321000000 0111 111111124446689999999997765432111 111100 00001111
Q ss_pred cCCCcccccccccCCHHHHHHHHHHHHh----CCCCCH--HHHHHHHHHHHHhCChhhhhc
Q 005912 306 IKGPEQHVLKPKAASKMVVSELKEELDA----QGLPTD--GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 306 ~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~d--~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
+....|...+|..++..... .|.+.. .+...+-.++.+.|+.++|..
T Consensus 700 --------~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 700 --------AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred --------HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00245667888888877654 344333 456666777788899888764
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.81 E-value=6.3 Score=37.66 Aligned_cols=95 Identities=8% Similarity=-0.075 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P--d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
-...|..+...+...| +.++|+..|..... ....| ...+|..+-..|.+.|+.++|...+......... .
T Consensus 34 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~- 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEG---EYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--L- 105 (168)
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-
Confidence 4566677777777777 67788888887765 22122 1346777777888888888888888877653211 1
Q ss_pred ccCCCCchHHHHHHHHHH-------HcCCHHHHHHHHH
Q 005912 144 HNEGNFGDPLSLYLRALC-------REGRIIELLEALE 174 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~-------k~G~~eeA~~vf~ 174 (670)
+.+++.+-..|. +.|++++|...++
T Consensus 106 ------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 106 ------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred ------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 115555555555 7777775555554
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=58 Score=39.88 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=78.4
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHH-----HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTET-----YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t-----yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
+.|-+.|-...|++.|..+.. |++.++. =-.++.-+.... ++.+++.+..|.. .+++-|..+..-
T Consensus 614 qLCEKAGL~qraLehytDl~D----IKR~vVhth~L~pEwLv~yFg~ls----ve~s~eclkaml~--~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYD----IKRVVVHTHLLNPEWLVNYFGSLS----VEDSLECLKAMLS--ANIRQNLQIVVQ 683 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHH----HHHHHHHhccCCHHHHHHHHHhcC----HHHHHHHHHHHHH--HHHHhhhHHHHH
Confidence 345556666666665555442 1111111 122334444443 6777788888888 788888887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCC---CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGG---TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~---~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
+-.-|+..=-.+...++|+.......- .....+....|++---.|.+-|+.|++.++.++-++
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 777777766677777777776653220 001112344455666789999999999998887654
No 153
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.50 E-value=8.6 Score=35.46 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
...+|..+...+.+.....+++.+. ..+ ..+...+|.+|..|++.+ ....+.+|.. . ++.+....
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~--~~~-~~~~~~~~~li~ly~~~~----~~~ll~~l~~--~------~~~yd~~~ 74 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL--KLN-SENPALQTKLIELYAKYD----PQKEIERLDN--K------SNHYDIEK 74 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH--ccC-ccchhHHHHHHHHHHHHC----HHHHHHHHHh--c------cccCCHHH
Confidence 4567888888888889999888887 444 367778899999998876 4455555542 1 23344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE-GRIIELLEALEA 175 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~-G~~eeA~~vf~~ 175 (670)
++..|-+.+.++++.-++..+.. |.-.|+.+... ++++.|.+.+..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~-----------------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGN-----------------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcC-----------------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 88888888888888888877643 44455555555 778888887775
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.42 E-value=10 Score=36.11 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC--CHHHHHHHHHHHHHcCCcccHH
Q 005912 11 HSNALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 11 ~~~Al~lf~~M~-~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P--d~~tyn~LI~ay~k~g~~~~~~ 87 (670)
+..+...+..+. ..+..--...|..+...+...|++++|...|++... ....| ...+|..+=..|...| +.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g---~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNG---EHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcC---CHH
Confidence 344445555552 333333456678888888889999999999999862 21122 2357888889999999 789
Q ss_pred HHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH-------HcCCHHHHHHHHHHH
Q 005912 88 DVAELLGMMVEDHKRLQPN-VKTYALLVECFT-------KYCAVTEAIRHFRAL 133 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a-------k~g~~d~A~~lf~~M 133 (670)
+|+..|..... +.|+ ..++..+...+. ..|+++.|...+...
T Consensus 90 eA~~~~~~Al~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 90 KALEYYFQALE----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHH----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999998876 2343 455666666666 778877666665543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=89.37 E-value=3.9 Score=44.60 Aligned_cols=90 Identities=13% Similarity=-0.002 Sum_probs=74.4
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC 116 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a 116 (670)
..+...|+++.|..+|++... .. .-+...|..+-.+|.+.| +.++|+..+..... +.| +...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~-P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LD-PNNAELYADRAQANIKLG---NFTEAVADANKAIE----LDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCcCCHHHHHHHHHH
Confidence 456678999999999999873 11 235678888888999999 88999999999977 345 56778888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcc
Q 005912 117 FTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g 137 (670)
|.+.|++++|...|+...+..
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.36 E-value=1 Score=35.80 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=39.8
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
.+.|++++|..+|+.+.. ..| |...+-.+..+|.+.| +.++|..+|..... ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~----~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLK----QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHG----GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCcCHHHHHHHH
Confidence 356777777777777652 123 5666667777777777 67777777777765 346655554443
No 157
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.32 E-value=0.74 Score=42.97 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH---hccCCCCCCH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV---EDHKRLQPNV 107 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~---~~~~gi~Pd~ 107 (670)
.....++..+...|+++.|..+.+.+.. . -.-|-..|..+|.+|...| +...|++.|..+. ...-|+.|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~-dP~~E~~~~~lm~~~~~~g---~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALA--L-DPYDEEAYRLLMRALAAQG---RRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-STT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4567778888889999999999988873 1 1346778999999999999 6777777776652 1127888887
Q ss_pred HHHH
Q 005912 108 KTYA 111 (670)
Q Consensus 108 ~Ty~ 111 (670)
.|-.
T Consensus 137 ~~~~ 140 (146)
T PF03704_consen 137 ETRA 140 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 158
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=12 Score=41.70 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
-|++..|+++|++-. ...|+...|++.|+-=.+-. ..+.|..+|+..+- +.|++.+|---..-=-+.|+
T Consensus 154 LgNi~gaRqiferW~----~w~P~eqaW~sfI~fElRyk---eieraR~IYerfV~----~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM----EWEPDEQAWLSFIKFELRYK---EIERARSIYERFVL----VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred hcccHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhh---HHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCc
Confidence 455555555555422 13566666666666555555 45555555555533 34665555555544455666
Q ss_pred HHHHHHHHHHHHH
Q 005912 123 VTEAIRHFRALQN 135 (670)
Q Consensus 123 ~d~A~~lf~~M~~ 135 (670)
+..+..+|.....
T Consensus 223 ~~~aR~VyerAie 235 (677)
T KOG1915|consen 223 VALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.12 E-value=11 Score=34.39 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAY 77 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay 77 (670)
.+-..|+.++|+.+|++-...|..... ..+-.+-+.|-.-|++++|..+|+.... . .|+ ......+--++
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--E--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H--CCCccccHHHHHHHHHHH
Confidence 455679999999999999888876542 2333455667788999999999988763 1 133 12222233466
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak 119 (670)
...| +.++|+..+-.-.. ++...|.--|..|+.
T Consensus 86 ~~~g---r~~eAl~~~l~~la------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLG---RPKEALEWLLEALA------ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHCC---CHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 7778 78888888876554 344466666666653
No 160
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.09 E-value=3.1 Score=38.69 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhch
Q 005912 549 PPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGE 628 (670)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (670)
++..|.......+--..+.-+ ..++.......-++.++++++..... ..++...|..+|.++...|+
T Consensus 45 ~~~~W~~~~r~~l~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~ 111 (146)
T PF03704_consen 45 DDEEWVEPERERLRELYLDAL------------ERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGR 111 (146)
T ss_dssp TTSTTHHHHHHHHHHHHHHHH------------HHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHHHHH------------HHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcC
Confidence 335777666554433333322 34455666788888899999888765 56788999999999999999
Q ss_pred hHHHHHHHHHHH-----HhCCCCCchhH
Q 005912 629 LDAAVAIVADME-----TTGIAVPDQTL 651 (670)
Q Consensus 629 ~~~~~~~~~~~~-----~~~~~~~~~~~ 651 (670)
..+|+++...++ +-|+.|+++|-
T Consensus 112 ~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 112 RAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 999999887763 57999998874
No 161
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.04 E-value=42 Score=41.05 Aligned_cols=222 Identities=8% Similarity=0.002 Sum_probs=119.5
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCCcccHHHHHHHHHHhHhccCC
Q 005912 25 GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAESYDRVQDVAELLGMMVEDHKR 102 (670)
Q Consensus 25 Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g~~~~~~eAl~lf~eM~~~~~g 102 (670)
++.| +...+-.|++.|-..+++++|..+.+.-.. ..|+...+-.+.. -|.+.+ +..++..+ .+.. -
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~---~ 92 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGILSLSRR---PLNDSNLL--NLID---S 92 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHHHHHhhc---chhhhhhh--hhhh---h
Confidence 4444 456778999999999999999999986542 2454433222222 444555 33333322 2211 1
Q ss_pred CCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 103 LQP-------------------NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 103 i~P-------------------d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.. +...+-.+..+|-+.|+.+++..+++++.+.... +.. +.|-+-..|+..
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~--------aLNn~AY~~ae~ 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPE--------IVKKLATSYEEE 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHH--------HHHHHHHHHHHh
Confidence 111 1245555666777777777777777777765421 111 566666777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-C
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-P 242 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-g 242 (670)
++++|.+++.....+.+ .-. -|+.+..-+.+++.. .-..++.-..+.+.+... |
T Consensus 164 -dL~KA~~m~~KAV~~~i--~~k------q~~~~~e~W~k~~~~----------------~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 164 -DKEKAITYLKKAIYRFI--KKK------QYVGIEEIWSKLVHY----------------NSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred -hHHHHHHHHHHHHHHHH--hhh------cchHHHHHHHHHHhc----------------CcccchHHHHHHHHHHhhhc
Confidence 77777777776655432 111 133333323222111 111222222233333221 1
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHH
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLK 303 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~ 303 (670)
..- ..-++..+...|-...+++++..+|+...+..-. +......+...+.
T Consensus 219 ~~~------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-----n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTR------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-----NNKAREELIRFYK 268 (906)
T ss_pred cch------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-----chhhHHHHHHHHH
Confidence 100 1122345668888999999999999999876554 3444444444444
No 162
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.92 E-value=24 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005912 153 LSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 153 yn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
+..+++.+...|++-+|.++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 44455555555555555555544
No 163
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.41 E-value=9.9 Score=36.89 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 14 Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
-++..+.+.+.|+.|+...|..||+.+.+.|. ...+..+. ..++-+|...-...+-.+..... .-.+-|++.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qll--q~~Vi~DSk~lA~~LLs~~~~~~-~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLL--QYHVIPDSKPLACQLLSLGNQYP-PAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHH--hhcccCCcHHHHHHHHHhHccCh-HHHHHHHHHH
Confidence 35666777788899999999999999999886 56777777 67888887777766655544320 0123344444
Q ss_pred HHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 005912 94 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 173 (670)
Q Consensus 94 ~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf 173 (670)
.++.. .|..++..+...|++-+|.++.+...... ++ ....++.+-.+.++..--..||
T Consensus 86 kRL~~----------~~~~iievLL~~g~vl~ALr~ar~~~~~~---~~---------~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 86 KRLGT----------AYEEIIEVLLSKGQVLEALRYARQYHKVD---SV---------PARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHhhh----------hHHHHHHHHHhCCCHHHHHHHHHHcCCcc---cC---------CHHHHHHHHHHcCCHHHHHHHH
Confidence 44432 56677788888999988888876643211 11 3566888888888877766666
Q ss_pred HHHhhCCC
Q 005912 174 EAMAKDNQ 181 (670)
Q Consensus 174 ~~M~~~gi 181 (670)
+-..+++.
T Consensus 144 ~ff~~~n~ 151 (167)
T PF07035_consen 144 RFFEERNL 151 (167)
T ss_pred HHHHHhhH
Confidence 66555543
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.20 E-value=36 Score=35.59 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 113 LVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFG----DPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 113 LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p----dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
+-..|-+. |+++.|.+.|......-.. .+ .+ ..+.-+...+.+.|++++|.++|++....-.
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~------e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQ------EG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHH------TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH------CC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 33345555 7788888888776642100 01 01 1677788899999999999999999877644
No 165
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.54 E-value=12 Score=34.51 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=72.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
+|..+.+.+....+..+++.+...|. .+...+|.||..|++.. ..+....|.. ..+.....-++.-|-+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--------ccccCCHHHHHHHHHHc
Confidence 36677778899999999999988874 78889999999999874 4444555542 12233334477777777
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY-CAVTEAIRHFRA 132 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~-g~~d~A~~lf~~ 132 (670)
+ ..+++.-++..+.. |.-.+..+.+. ++++.|.+++..
T Consensus 83 ~---l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 K---LYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred C---cHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7 66777777777633 22233333333 777777777765
No 166
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.42 E-value=64 Score=37.56 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
++-.++..|-+.|+++.|...++.-..+ +|+.+ --.+-. .+.++|.|.+.+|
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH----TPTli------Ely~~K------------------aRI~kH~G~l~eA 424 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH----TPTLI------ELYLVK------------------ARIFKHAGLLDEA 424 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc----CchHH------HHHHHH------------------HHHHHhcCChHHH
Confidence 5566788888999999999998876554 34322 111100 1446899999999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPME-TSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe-~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
..|++...... .||. + |+ -+++-..+++++++|..+.......|..
T Consensus 425 a~~l~ea~elD-~aDR--~-----INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 425 AAWLDEAQELD-TADR--A-----INSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHHHHHHhcc-chhH--H-----HHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 99999876531 1333 3 22 4667778999999999998888777753
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.29 E-value=76 Score=38.29 Aligned_cols=55 Identities=20% Similarity=0.060 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHH-HHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 264 CLEDGKKYHRKLL-RTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 264 ~~~G~~e~A~~Lf-~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
-..|+.++|+.++ ....+.-.. .+..-.+..++.+....+ |.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~----~~~~l~~~~~dllk~l~~-------------w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTS----ANLYLENKKLDLLKLLNR-------------WQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHHHhcC-------------hHHHHHHHHHHHHhC
Confidence 4566677777776 333333222 333333344444444333 555555555555555
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=86.63 E-value=45 Score=34.93 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 220 RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN-PMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 220 ~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~-LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
.++...|..++|..+|+.........+...+.... ++.++ -.+...|+...|.+.|+........-.+.........+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~-l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI-LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH-HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 44677789999999999886654333321122221 23333 24455789999999999987553221111223344455
Q ss_pred HHHHHH
Q 005912 299 EERLKK 304 (670)
Q Consensus 299 l~~l~k 304 (670)
++++..
T Consensus 242 ~~A~~~ 247 (282)
T PF14938_consen 242 LEAYEE 247 (282)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.17 E-value=44 Score=34.38 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=103.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHH---HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMAT-TFHFN---HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR- 79 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn---~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k- 79 (670)
+.+.|++++|.+.|+.+... -|+ ....+ .|..+|-+.++++.|...|++..+ ..+-.|++ -|-..+.|.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~~~-~~a~Y~~g~~~~ 117 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNI-DYVLYMRGLTNM 117 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCCch-HHHHHHHHHhhh
Confidence 45689999999999999874 333 33332 344677889999999999999874 33334443 45555555442
Q ss_pred -cC---------------CcccHHHHHHHHHHhHhcc--CCCCCCHHHHHH------------HHHHHHHcCCHHHHHHH
Q 005912 80 -AE---------------SYDRVQDVAELLGMMVEDH--KRLQPNVKTYAL------------LVECFTKYCAVTEAIRH 129 (670)
Q Consensus 80 -~g---------------~~~~~~eAl~lf~eM~~~~--~gi~Pd~~Ty~~------------LL~a~ak~g~~d~A~~l 129 (670)
.+ +......|+..|.+..+.. +...|+....-. +..-|-+.|.+.-|..-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 11 1112567888888887631 111122222111 22336678888888888
Q ss_pred HHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 130 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 130 f~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
|+.+.+.-..... .++..-.|+.+|.+.|..++|..+...+.
T Consensus 198 ~~~v~~~Yp~t~~------~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 198 VEQMLRDYPDTQA------TRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHCCCCch------HHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8888875332211 12277788999999999999988877653
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.10 E-value=20 Score=38.17 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHchhCCCC--CCCCHHHHHHHHHHHHHcCC
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQAT--CG----IPEVAFATFENMEYGEDY--MKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak--~G----~~e~A~~lf~~M~~~~~g--i~Pd~~tyn~LI~ay~k~g~ 82 (670)
+.+.+.+++.|++.|+.-+.++|=+..-.... .. ...+|..+|+.|++ ... -.++-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk-~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK-KHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-hCccccCccchhHHHHHhc--cccc
Confidence 56778899999999999998888553333333 22 36789999999995 222 25677888888777 3332
Q ss_pred cc-cHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHccCCCccc
Q 005912 83 YD-RVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFTKYCA--VTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 83 ~~-~~~eAl~lf~eM~~~~~gi~Pd~--~Ty~~LL~a~ak~g~--~d~A~~lf~~M~~~g~~~~v~ 143 (670)
.+ .++.+..+|..+.. .|+..+. ...+.+|..+..... +..+.+++..+.+.+..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~--~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 155 VEELAERMEQCYQKLAD--AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred HHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 22 25678888999888 7887743 334444444332222 457888999999988765544
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.91 E-value=3.2 Score=32.68 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
-..+.+.|++++|..+|+.+.+.... .++.+..+-..|.+.|++++|..+|+...+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD---------NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT---------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678999999999999999886421 12278889999999999999999999987654
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.70 E-value=51 Score=36.91 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 117 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ 117 (670)
+.+++.+|..+|-++-+ +..-.|. -+.-+-+|+||..++ .+.....+.+..+ ..| ...|-.|..+.
T Consensus 18 kq~~~~esEkifskI~~-e~~~~~f~lkeEvl~grilnAffl~n----ld~Me~~l~~l~~----~~~-~s~~l~LF~~L 87 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYD-EKESSPFLLKEEVLGGRILNAFFLNN----LDLMEKQLMELRQ----QFG-KSAYLPLFKAL 87 (549)
T ss_pred HHhhhhHHHHHHHHHHH-HhhcchHHHHHHHHhhHHHHHHHHhh----HHHHHHHHHHHHH----hcC-CchHHHHHHHH
Confidence 56788999999888763 1111111 344678999999887 6666666666655 234 34455555554
Q ss_pred H--HcCCHHHHHHHHHHHHHc--cCCCcccc-c-CCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCCch
Q 005912 118 T--KYCAVTEAIRHFRALQNY--EGGTKVLH-N-EGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQP--VPPRA 187 (670)
Q Consensus 118 a--k~g~~d~A~~lf~~M~~~--g~~~~v~~-~-~g~~pd--tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~--i~p~~ 187 (670)
. +.+..+.|.+.+..-..+ +..+.... + +...++ .=+..++++...|++.++..+++.|..+=.+ -.|++
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 3 788999999999887765 22221110 0 112222 3456788889999999999999988765431 14777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHH
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDY 217 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~ 217 (670)
-+++++.--+-++++--+.+.....+.|+.
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdy 197 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDY 197 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHH
Confidence 652222222333343233333444555664
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.42 E-value=12 Score=39.13 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v 142 (670)
...|+.-+.-+.+.| +.++|+..|...... .|+. ..+--+-.+|...|+++.|...|..+.+.-..
T Consensus 143 ~~~Y~~A~~l~~~~~---~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKS---RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--- 212 (263)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Confidence 455777776666778 678999999998772 3543 46667788889999999999999999875322
Q ss_pred cccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....|+.+-.+...|...|+.++|..+|+...+..
T Consensus 213 ---s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 ---SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12223455556777889999999999999998764
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.35 E-value=12 Score=38.97 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
...|+..+..+.+.|++++|...|+.+.. . .|+. ..+-.+-..|...| +.++|...|..+.....+-..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~--yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK--K--YPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--H--CcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcc
Confidence 45678888777888999999999999874 1 2432 46677888889999 788999999999863111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
....+-.+..++...|+.+.|..+|+.+.+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 23334445567778999999999999888753
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.23 E-value=72 Score=38.50 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+.|.|+.++|+.+++....-+.. |..|..+|-..|-..+..++|..+|++..+ ..|+-..-..+..+|++.++|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~----~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ----KYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hCCcHHHHHHHHHHHHHHHHHH
Confidence 45678888888887777655444 788888888888888888888888888762 3567777777788888877553
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.14 E-value=4 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=7.8
Q ss_pred HHHcCChHHHHHHHHHch
Q 005912 40 QATCGIPEVAFATFENME 57 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~ 57 (670)
|.+.|++++|..+|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHCTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 334444444444444444
No 177
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.81 E-value=3.6 Score=33.69 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--CCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE--GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g--~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.+|+.+-..|...|++++|+..|+...... .+++- .....+++.|-..|.+.|++++|.++|++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH----PDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577888888999999999999998877531 11100 0001188899999999999999999998753
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=84.72 E-value=63 Score=37.23 Aligned_cols=142 Identities=15% Similarity=0.025 Sum_probs=95.4
Q ss_pred cCCCCCHHHHHHHHHHHHHc--C---ChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcc-----cHHHHHHH
Q 005912 24 AGRMATTFHFNHLLSCQATC--G---IPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYD-----RVQDVAEL 92 (670)
Q Consensus 24 ~Gv~Pd~~tyn~LI~~yak~--G---~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~-----~~~eAl~l 92 (670)
.+...|...|...+.+.... + ....|..+|++... ..|| ...|..+-.+|.....+. ....+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34567889999999886543 2 37799999999873 3566 344555444443322121 13344444
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 93 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 93 f~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
....... .....+..+|..+--.+...|++++|...++....... +.. .|..+-..|...|+.++|...
T Consensus 407 ~~~a~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~--------a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 407 LDNIVAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWL--------NYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHhhhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHH--------HHHHHHHHHHHcCCHHHHHHH
Confidence 4443220 11233557777776666678999999999999988652 222 799999999999999999999
Q ss_pred HHHHhhCC
Q 005912 173 LEAMAKDN 180 (670)
Q Consensus 173 f~~M~~~g 180 (670)
|+.-...+
T Consensus 476 ~~~A~~L~ 483 (517)
T PRK10153 476 YSTAFNLR 483 (517)
T ss_pred HHHHHhcC
Confidence 99876665
No 179
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.67 E-value=1.2e+02 Score=37.37 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=89.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
..++-+++|..+|++..- +....+.||.- .+.++.|.+.-++.. +| ..|+.+-++-.+.| .
T Consensus 1059 i~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p--~vWsqlakAQL~~~---~ 1119 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EP--AVWSQLAKAQLQGG---L 1119 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------Ch--HHHHHHHHHHHhcC---c
Confidence 445667777777766542 44444555543 567777777777666 33 45888888888888 7
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
+.+|++-|-+- -|...|.-++..+.+.|.+++-.+.+.-.+++.-.|. .=+.||-+|++.++
T Consensus 1120 v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----------id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1120 VKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----------IDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc----------chHHHHHHHHHhch
Confidence 77877766322 3556788888888888888888887766555443333 34678888888888
Q ss_pred HHHHHHHH
Q 005912 166 IIELLEAL 173 (670)
Q Consensus 166 ~eeA~~vf 173 (670)
+.+..+++
T Consensus 1182 l~elE~fi 1189 (1666)
T KOG0985|consen 1182 LTELEEFI 1189 (1666)
T ss_pred HHHHHHHh
Confidence 87766654
No 180
>PLN02789 farnesyltranstransferase
Probab=83.42 E-value=70 Score=34.42 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=103.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT-FHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
.+...++.++|+.+..+..+. .|+. ..|+.-=..+...| .++++...++++.. . -..+...|+----.+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~-npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--D-NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--H-CCcchHHhHHHHHHHHHcC
Confidence 345567888899888888764 3433 23443333444556 57999999999872 2 2345566775544455555
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
.. ...+++.++..|.+ .. .-|..+|+..-.++.+.|+++++++.+..+.+..+...- +|+-.--.+.
T Consensus 121 ~~-~~~~el~~~~kal~--~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s---------AW~~R~~vl~ 187 (320)
T PLN02789 121 PD-AANKELEFTRKILS--LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS---------AWNQRYFVIT 187 (320)
T ss_pred ch-hhHHHHHHHHHHHH--hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh---------HHHHHHHHHH
Confidence 21 13678899989987 22 236789999999999999999999999999986543322 5665544444
Q ss_pred Hc---CCH----HHHHHHHHHHhhCC
Q 005912 162 RE---GRI----IELLEALEAMAKDN 180 (670)
Q Consensus 162 k~---G~~----eeA~~vf~~M~~~g 180 (670)
+. |.. +++...........
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC
Confidence 43 222 45666665665544
No 181
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.84 E-value=28 Score=39.22 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=95.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMA--TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~P--d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.-.|+++.+.++.+. ..+.| ...-.+.++..+-+.|.++.|+.+-..-. .=..-..+.|
T Consensus 272 v~~~d~~~v~~~i~~---~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------~rFeLAl~lg-- 332 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA---SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------------HRFELALQLG-- 332 (443)
T ss_dssp HHTT-HHH-----HH---HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------------HHHHHHHHCT--
T ss_pred HHcCChhhhhhhhhh---hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------------HHhHHHHhcC--
Confidence 345666665555431 11111 23447888888889999999888764432 2233345677
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+++.|+++-.+ .++...|..|-....+.|+++.|++.|..... |..|+=.|.-.
T Consensus 333 -~L~~A~~~a~~--------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------~~~L~lLy~~~ 386 (443)
T PF04053_consen 333 -NLDIALEIAKE--------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------FSGLLLLYSST 386 (443)
T ss_dssp --HHHHHHHCCC--------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHC
T ss_pred -CHHHHHHHHHh--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------ccccHHHHHHh
Confidence 67777655432 35778999999999999999999999987654 78888899999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHH
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 204 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~l 204 (670)
|+.+...++-+.-..+|- .+....++.+.+-+..|+++
T Consensus 387 g~~~~L~kl~~~a~~~~~---~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD---INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp T-HHHHHHHHHHHHHTT----HHHHHHHHHHHT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC---HHHHHHHHHHcCCHHHHHHH
Confidence 999888888888777773 55555444555555556544
No 182
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.25 E-value=13 Score=35.30 Aligned_cols=95 Identities=12% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHchhC-CCCC--CCCHHHHHHHHHHHHHcCCccc-HHHHHHHHH
Q 005912 21 MEAAGRMATTFH--FNHLLSCQATCGIPEVAFATFENMEYG-EDYM--KPDTETYNCVIQAYTRAESYDR-VQDVAELLG 94 (670)
Q Consensus 21 M~~~Gv~Pd~~t--yn~LI~~yak~G~~e~A~~lf~~M~~~-~~gi--~Pd~~tyn~LI~ay~k~g~~~~-~~eAl~lf~ 94 (670)
|.+.+..+++.+ .|++++-.+..++..-...+++.+... ...+ ..+..+|++++++.++.. - ---++.+|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs---SaK~~~~~Lf~ 104 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS---SAKLTSLTLFN 104 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh---HHHHHHHHHHH
Confidence 344566666544 499999999999999999998888630 0000 345678999999997776 3 345788999
Q ss_pred HhHhccCCCCCCHHHHHHHHHHHHHc
Q 005912 95 MMVEDHKRLQPNVKTYALLVECFTKY 120 (670)
Q Consensus 95 eM~~~~~gi~Pd~~Ty~~LL~a~ak~ 120 (670)
-|++ .+.+++..-|..+|.+|.+-
T Consensus 105 ~Lk~--~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKK--NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHH--cCCCCCHHHHHHHHHHHHcC
Confidence 9998 78999999999999998765
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.31 E-value=7.5 Score=30.83 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhh
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG-RIIELLEALEAMAK 178 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G-~~eeA~~vf~~M~~ 178 (670)
+..+|..+-..+.+.|++++|+..|....+.... + +..|..+=.+|.+.| ++++|...|+...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~--------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-N--------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-H--------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C--------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888888999999999999999998885322 1 127888888899999 79999999987654
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=80.62 E-value=46 Score=30.41 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=64.0
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---H-HHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN---V-KTYA 111 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd---~-~Ty~ 111 (670)
.++-..|+.++|..+|++-. ..|+... ...+--+-++|...| +.++|+.+|.+... . .|+ . ....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al--~~gL~~~~~~~a~i~lastlr~LG---~~deA~~~L~~~~~--~--~p~~~~~~~l~~ 79 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRAL--AAGLSGADRRRALIQLASTLRNLG---RYDEALALLEEALE--E--FPDDELNAALRV 79 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--H--CCCccccHHHHH
Confidence 35567899999999999988 6676554 345556667788888 89999999999876 2 244 1 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+-.++...|+.++|.+.+-....
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233477789999999998865443
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.52 E-value=73 Score=32.72 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=101.7
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTY--ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~--~Ty--~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
.-..+.+.| +.++|.+.|++... . -|+. ... -.+..+|-+.++.+.|...|+...+..+...-+
T Consensus 38 ~A~~~~~~g---~y~~Ai~~f~~l~~--~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----- 105 (243)
T PRK10866 38 TAQQKLQDG---NWKQAITQLEALDN--R--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----- 105 (243)
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHH--h--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-----
Confidence 444456678 68899999999987 2 3433 221 234567789999999999999998764322111
Q ss_pred CchHHHHHHHHHHH--cC---------------C---HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHH-H
Q 005912 149 FGDPLSLYLRALCR--EG---------------R---IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ-E 207 (670)
Q Consensus 149 ~pdtyn~LI~ay~k--~G---------------~---~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~-~ 207 (670)
.|...+.+++. .+ + ..+|+..|+.+.++- |++- |......-+..++ .
T Consensus 106 ---~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----P~S~-----ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 106 ---DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----PNSQ-----YTTDATKRLVFLKDR 173 (243)
T ss_pred ---HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----cCCh-----hHHHHHHHHHHHHHH
Confidence 45566666552 11 1 345777788877764 3432 4333333332222 2
Q ss_pred HHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc-cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 208 EAELGYEIDYIARYISEGGLTGERKRWVPRRG-KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 208 m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~-~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
+.+..+ .|..++-+.|....|..=|+.+. .+ |+.. ++ --.+-.+..+|...|..+.|......+.
T Consensus 174 la~~e~---~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~-~~-~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYEL---SVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQ-AT-RDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH---HHHHHHHHcCchHHHHHHHHHHHHHC---CCCc-hH-HHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 222222 34454555556666666666665 45 3321 11 1122246688999999999988776554
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=80.07 E-value=10 Score=30.07 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYC-AVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g-~~d~A~~lf~~M~~ 135 (670)
+..+|..+=..+.+.| +.++|+..|.+..+ +.| +...|..+-.+|.+.| ++++|.+.+....+
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4667888888899999 88899999998877 345 4567788888888999 79999999887765
No 187
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=79.89 E-value=95 Score=33.67 Aligned_cols=200 Identities=13% Similarity=0.087 Sum_probs=110.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH---HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ---AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~---ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
|=+.+.-.|.+..|+.-|.... .-|+..|-++.. .|...| +..-|+.=|....+ ++||-..-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAv------e~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVle----lKpDF~~ARi 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAV------EGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLE----LKPDFMAARI 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH------cCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHh----cCccHHHHHH
Confidence 3445666788888988888777 677777877764 355666 55667766777665 5787432211
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC--CCCc--hHH--HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 005912 113 -LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE--GNFG--DPL--SLYLRALCREGRIIELLEALEAMAKDNQPVPP 185 (670)
Q Consensus 113 -LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~--g~~p--dty--n~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p 185 (670)
--..+.+.|.++.|..=|+.+.++......+... ..-+ ..| -..+..+.-+|+...|...+..+.+-. +|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---~W 187 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---PW 187 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---cc
Confidence 1134568999999999999999875432211000 0000 011 123334444556666666655555433 35
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHh
Q 005912 186 RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 265 (670)
Q Consensus 186 ~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~ 265 (670)
+.-+ |..-.. .+...|....|..=.+...+. ..|...-.| .+...+-.
T Consensus 188 da~l----~~~Rak---------------------c~i~~~e~k~AI~Dlk~askL--s~DnTe~~y-----kis~L~Y~ 235 (504)
T KOG0624|consen 188 DASL----RQARAK---------------------CYIAEGEPKKAIHDLKQASKL--SQDNTEGHY-----KISQLLYT 235 (504)
T ss_pred hhHH----HHHHHH---------------------HHHhcCcHHHHHHHHHHHHhc--cccchHHHH-----HHHHHHHh
Confidence 5432 111111 123344454444333333222 122211222 23356678
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 005912 266 EDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 266 ~G~~e~A~~Lf~~M~~~g 283 (670)
-|+.+.++..+++....+
T Consensus 236 vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLD 253 (504)
T ss_pred hhhHHHHHHHHHHHHccC
Confidence 899999999998887654
No 188
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.61 E-value=25 Score=39.59 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=91.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+-+.|..+.|+.+-..- ..=.....++|+++.|.++-++.. +...|..|=....+.|
T Consensus 304 fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--------~~~~W~~Lg~~AL~~g-- 361 (443)
T PF04053_consen 304 FLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--------DPEKWKQLGDEALRQG-- 361 (443)
T ss_dssp HHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--------THHHHHHHHHHHHHTT--
T ss_pred HHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--------cHHHHHHHHHHHHHcC--
Confidence 344455556665554332 233456678999999998876554 6779999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.+-|.+.|.+... |..|+--|.-.|+.+.-.++-.....+| -+|.-..++.-.
T Consensus 362 -~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--------------~~n~af~~~~~l 415 (443)
T PF04053_consen 362 -NIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG--------------DINIAFQAALLL 415 (443)
T ss_dssp -BHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHH
T ss_pred -CHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc--------------CHHHHHHHHHHc
Confidence 78889888988754 6778888889999988888887777654 588888899999
Q ss_pred CCHHHHHHHHHHH
Q 005912 164 GRIIELLEALEAM 176 (670)
Q Consensus 164 G~~eeA~~vf~~M 176 (670)
|++++..+++.+-
T Consensus 416 gd~~~cv~lL~~~ 428 (443)
T PF04053_consen 416 GDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 9999999888754
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=77.78 E-value=72 Score=36.75 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc--------CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 11 HSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATC--------GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~--------G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+..|..+|++..+. .|+ ...|..|.-+|... ..+..+......... ......+...|.++--.+...|
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a-l~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA-LPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh-cccCcCChHHHHHHHHHHHhcC
Confidence 77899999988874 565 34444433333322 123344444444331 1123345577887755555677
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
+.++|...|++... +.|+...|..+-..|...|+.++|...+....+...
T Consensus 435 ---~~~~A~~~l~rAl~----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 435 ---KTDEAYQAINKAID----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ---CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 79999999999987 458999999999999999999999999998877543
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=77.05 E-value=10 Score=30.30 Aligned_cols=56 Identities=16% Similarity=0.018 Sum_probs=44.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 58 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~ 58 (670)
-..|.+.++++.|+++++.+...+ +.+...|...-.+|.+.|++.+|...|+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356888999999999999988752 23566667777888889999999999988773
No 191
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=77.05 E-value=94 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=14.0
Q ss_pred hcHHHHHHHHHcCCCcHHHHHHH
Q 005912 579 GDCAVIIRAAIRAPLPSAFLKIL 601 (670)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~ 601 (670)
.-|+|||..|.+..--+-|-.||
T Consensus 487 elc~mii~cc~QerTy~kFYglL 509 (739)
T KOG2140|consen 487 ELCNMIIDCCAQERTYEKFYGLL 509 (739)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 34666666666666666565555
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=76.86 E-value=23 Score=39.51 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=89.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHH-chhCCCCCCCCHHHH-HHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETY-NCVIQAYT 78 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~-M~~~~~gi~Pd~~ty-n~LI~ay~ 78 (670)
|+...+..-++.|+.+|-+....| +.++++.|+++|..|| .|+...|..+|+- |.. .||...| +--+.-+.
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-----f~d~~~y~~kyl~fLi 477 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-----FPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-----CCCchHHHHHHHHHHH
Confidence 445556777899999999999999 6799999999999998 5788899999986 442 5666555 44555566
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.-| +-..|..+|+.-.. .+.-+ ...|-.+|.-=++.|++..+..+-+.|..
T Consensus 478 ~in---de~naraLFetsv~---r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RIN---DEENARALFETSVE---RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhC---cHHHHHHHHHHhHH---HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 667 67788889985543 23333 45677777777777887777766666654
No 193
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=1.3e+02 Score=33.45 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHH----HHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET----YNCVIQAYT 78 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t----yn~LI~ay~ 78 (670)
++|-.++...|..+|-.+.... ++-|+....++-..|...|+..+|...|+.... +.|+.++ |..|+ .
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL---~ 277 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLL---G 277 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHH---H
Confidence 4455677777777776665443 455777889999999999999999999998762 2444332 43333 2
Q ss_pred HcCCccc-------------------------------HHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005912 79 RAESYDR-------------------------------VQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEA 126 (670)
Q Consensus 79 k~g~~~~-------------------------------~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A 126 (670)
+.|++++ ...|+.+-++-.+ +.|+ ...|-.==..+...+++.+|
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHH
Confidence 3332222 2233333222222 1121 11121111345578899999
Q ss_pred HHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 127 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 127 ~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.-.|+...... +..+. .|--||.+|.-.|++.+|.-+-+.
T Consensus 354 ~IaFR~Aq~La-p~rL~--------~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLE--------IYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHhcc-hhhHH--------HHHHHHHHHHhhchHHHHHHHHHH
Confidence 99999877632 11222 899999999999999998765544
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=76.33 E-value=11 Score=30.81 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL---QPN-VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi---~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+|+.+=..|...| +.++|+..|++.......+ .|+ ..+|..+-.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELG---RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777777 6667776666654310011 233 56788888899999999999999987654
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=74.74 E-value=90 Score=30.89 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=83.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGR-MA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv-~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
.+.+.|++.+|...|+.+...-- .| -....=.+..+|-+.|+++.|...|++... ..+-.|. .-|-..+.|.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~~-~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSPK-ADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-TT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcc-hhhHHHHHHHHHHH
Confidence 35678999999999999886411 11 122334566778889999999999999764 2222333 33444444444322
Q ss_pred ----------CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 82 ----------SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 82 ----------~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
+.....+|+. +|..+|.-|=++.-..+|...+..+...--.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~-----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~------------ 142 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE-----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAE------------ 142 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH-----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH------------
T ss_pred hCccchhcccChHHHHHHHH-----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHH------------
Confidence 0111223333 3444555555566666666665555432100
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.--.+-+.|.+.|.+..|..-|+.+.+.-
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 11235677889999999999999888764
No 196
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.99 E-value=21 Score=41.47 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
.+|+.+|...|++-.+..+++.......|-+.=...||.-|+.+.++|.++ +-+++.-..+..++ ..+.-|..||+.|
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~-l~~~~~~~~~~lq~-a~ln~d~~t~all 109 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE-LTDVLSNAKELLQQ-ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHH-hhcCCcchHHHHH
Confidence 389999999999999999999987423344445678999999999999886 33444333333332 5577899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 005912 114 VECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+.+-.+--+-..+.-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 9887765555555555555544
No 197
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.49 E-value=7.2 Score=45.83 Aligned_cols=137 Identities=22% Similarity=0.400 Sum_probs=74.0
Q ss_pred ChHHHHHHhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHH---HHHHHHH--------HH-------Hc
Q 005912 511 DPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVEL---AIQIMLK--------VI-------EL 572 (670)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~-------~~ 572 (670)
+++++|+.+... ....-..|+++| .=-+.+.+-++...+.++...+ |++.+++ .+ .+
T Consensus 3 ~l~~~f~~~a~~---~~~~~~~i~~~W--~~l~~~~~~~~~~~~~~~~~~~v~~sr~~LE~qf~~~v~~~v~~~~~~A~~ 77 (613)
T PF04097_consen 3 NLVEAFASLAQI---EDFKDRQIADAW--KLLSQMTDEPPSRSSASLRKQIVRGSRRYLEKQFLQYVEETVAKNPNEAQL 77 (613)
T ss_dssp HHHHHHHHHHHH----SHHHHHHHHHH--HHHHTT---------TTS---HHHHHHHHHHHHHHHHHHHHHCCCTTS---
T ss_pred hHHHHHHHHHhc---cCCchHHHHHHH--HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcc
Confidence 467788887754 233456689998 4444454555566666666544 6666665 22 68
Q ss_pred CCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCchhHH
Q 005912 573 GGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLD 652 (670)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (670)
||.|++.. .|+||++...+... .-+.-.+-..-|.|+|. +|=-|+..|.+++|+.++...+ .++..-+...-
T Consensus 78 gg~p~~~~---~V~afv~~~~~~~~---~~~~~~l~~~~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~ 149 (613)
T PF04097_consen 78 GGVPSTYN---KVRAFVNVRLKRPG---AWTDSGLEIVNGDPIWA-LIYYCLRCGDYDEALEVANENR-NQFQKIERSFP 149 (613)
T ss_dssp -SSS-HHH---HHHHHHHCTTBESS---CBSSTT--EETTEEHHH-HHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHH
T ss_pred cCCCCcHH---HHHHHHHHHhcccC---CCcccccccCCCCccHH-HHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHH
Confidence 99999865 88888866654311 00111122346778885 6778999999999999995444 44555555556
Q ss_pred HHhhhhcc
Q 005912 653 RVITSRQT 660 (670)
Q Consensus 653 ~~~~~~~~ 660 (670)
..+.+...
T Consensus 150 ~~l~~~~~ 157 (613)
T PF04097_consen 150 TYLKAYAS 157 (613)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHHh
Confidence 66665544
No 198
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.37 E-value=1.4 Score=53.19 Aligned_cols=10 Identities=50% Similarity=0.900 Sum_probs=4.6
Q ss_pred HHhhh-ccCcC
Q 005912 397 KRRFL-GEGLN 406 (670)
Q Consensus 397 ~~~ll-g~~~~ 406 (670)
+++|| |.-.+
T Consensus 1704 rrrllsgnttn 1714 (3015)
T KOG0943|consen 1704 RRRLLSGNTTN 1714 (3015)
T ss_pred hhhhccCCccC
Confidence 44566 44333
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.29 E-value=17 Score=29.02 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=32.7
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
+.|.+.++++.|..+++.+.. .. ..+...|...=.+|.+.| +..+|.+.|....+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~-p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LD-PDDPELWLQRARCLFQLG---RYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hC-cccchhhHHHHHHHHHhc---cHHHHHHHHHHHHH
Confidence 456666777777777776662 11 224455555556666666 56666666666655
No 200
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.81 E-value=22 Score=37.87 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=77.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh-CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 005912 24 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 102 (670)
Q Consensus 24 ~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~-~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~g 102 (670)
.|....+.|...++..-.....++.+...+-.+.. ...-..|+...| ++|.-+-+- +.++++-++..=.+ .|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllky----~pq~~i~~l~npIq--YG 130 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLKY----DPQKAIYTLVNPIQ--YG 130 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHcc----ChHHHHHHHhCcch--hc
Confidence 45666777777787777777888998888777763 111223333332 334444443 47899999988888 89
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 103 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 103 i~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+.||.+|++.+|..+.+.+++..|.++.-.|+..
T Consensus 131 iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877754
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=72.58 E-value=59 Score=31.26 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYA 111 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~ 111 (670)
=++-.-+...|++++|..+|+.... +.|.... |-.|=.++-..| +..+|+..|..... +.| |...|-
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~----L~~ddp~~~~ 107 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQK---HWGEAIYAYGRAAQ----IKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCchHHH
Confidence 3444456678999999999999773 3555444 555555566677 78999999998876 345 467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+-.++...|+.+.|++.|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999999998776
No 202
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.79 E-value=6.3 Score=29.86 Aligned_cols=32 Identities=6% Similarity=0.336 Sum_probs=16.5
Q ss_pred hhhchhHHHHHHHHHHHHhCCCCCchhHHHHh
Q 005912 624 LDLGELDAAVAIVADMETTGIAVPDQTLDRVI 655 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (670)
-+.|-.+++-.+++.|..+|+..|++.|.+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444444555555555555555555555554
No 203
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.23 E-value=22 Score=37.50 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH----hccCCCCC
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV----EDHKRLQP 105 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~----~~~~gi~P 105 (670)
..++..++..+..+|+.+.+.+.+++... . -.-|...|..||.+|.++| +-..|+..|+++. ++ .|+.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~-dp~~E~~~~~lm~~y~~~g---~~~~ai~~y~~l~~~~~ed-lgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--L-DPYDEPAYLRLMEAYLVNG---RQSAAIRAYRQLKKTLAEE-LGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--c-CccchHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhhhh-cCCCc
Confidence 35678888999999999999988888773 1 1457888999999999999 5556665555442 23 89999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 005912 106 NVKTYALLVECFTKYCA 122 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~ 122 (670)
-..+.........+.-.
T Consensus 226 ~~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 226 APELRALYEEILRQDPL 242 (280)
T ss_pred cHHHHHHHHHHhccccc
Confidence 88888887777665443
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=70.21 E-value=95 Score=33.41 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
|.-+...|....|..+..+.+ .|+.--|-.-|.+|+..+++++-..+-.. +.+++-|--.+.+|.+.|
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--------CCCCCChHHHHHHHHHCC
Confidence 455677888888887755553 48889999999999999999987776432 345688999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~ 132 (670)
...+|..+...+ ++.--+..|.++|++.+|.+.-..
T Consensus 252 ---~~~eA~~yI~k~------------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 ---NKKEASKYIPKI------------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred ---CHHHHHHHHHhC------------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888777653 335677888999999988776443
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=69.28 E-value=50 Score=37.03 Aligned_cols=63 Identities=19% Similarity=0.117 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
+...|+.+=.+|.+.|++++|...|++-.. +.|+. .+|..+-.+|.+.| +.++|+..|.+..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LG---r~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYRE---EGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 567889999999999999999999999552 36764 46999999999999 89999999999877
No 206
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.66 E-value=60 Score=37.25 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHH
Q 005912 10 DHSNALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 10 ~~~~Al~lf~~M~-~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.+.+..++|-++. ..+..+|...++.|=-.|--.|.+++|...|+...+ ++| |...||-|=..++... +-+
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd~~lWNRLGAtLAN~~---~s~ 481 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPNDYLLWNRLGATLANGN---RSE 481 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh----cCCchHHHHHHhhHHhcCCc---ccH
Confidence 3455666776665 456567888888888888889999999999999773 456 5688999999998887 889
Q ss_pred HHHHHHHHhHhccCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc--hHHHHHHHHHHHc
Q 005912 88 DVAELLGMMVEDHKRLQPNV--KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG--DPLSLYLRALCRE 163 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p--dtyn~LI~ay~k~ 163 (670)
+|+.-|.+-++ ++|+- +-||.-| +|.+.|.+.+|...|-......-. ...++.+..+ ..|.+|=.++.-.
T Consensus 482 EAIsAY~rALq----LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~k-s~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 482 EAISAYNRALQ----LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRK-SRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred HHHHHHHHHHh----cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhc-ccccccCCcchHHHHHHHHHHHHHc
Confidence 99999999876 67863 3455554 789999999999988765532111 0001111112 1666665555555
Q ss_pred CCHHHHH
Q 005912 164 GRIIELL 170 (670)
Q Consensus 164 G~~eeA~ 170 (670)
++.+-+.
T Consensus 556 ~~~D~l~ 562 (579)
T KOG1125|consen 556 NRSDLLQ 562 (579)
T ss_pred CCchHHH
Confidence 5555443
No 207
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=68.42 E-value=2.4e+02 Score=33.04 Aligned_cols=316 Identities=12% Similarity=0.042 Sum_probs=157.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH------HHc
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY------TRA 80 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay------~k~ 80 (670)
+.|+++...+.-..+.+. ..-....|-.+.-++--.|+...|..+.++..+ ...-.|+...|.-...-+ .++
T Consensus 121 QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~-t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK-TQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555442 222456677777777777888888888887773 222346666655444333 344
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| ..+.|++-+..-.. -..|.+.| -+--.-+.+.+++++|..++..+..+.+ .++. .|--+..+
T Consensus 199 g---~~q~ale~L~~~e~----~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~--------Yy~~l~~~ 262 (700)
T KOG1156|consen 199 G---SLQKALEHLLDNEK----QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLD--------YYEGLEKA 262 (700)
T ss_pred c---cHHHHHHHHHhhhh----HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHH--------HHHHHHHH
Confidence 5 46666666654432 22344444 3334556677888888888887776542 2222 34455555
Q ss_pred HHHcCCHHHHH-HHHHHHhhCCCC-CCCchHHHHhH-HHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHcCC---cHHH-
Q 005912 160 LCREGRIIELL-EALEAMAKDNQP-VPPRAMILSRK-YRTLVSSWIEPLQEEAELGYEIDY--IARYISEGG---LTGE- 230 (670)
Q Consensus 160 y~k~G~~eeA~-~vf~~M~~~gi~-i~p~~~i~~~t-y~~ll~a~~~ll~~m~~~G~~pd~--i~~~~~~~g---~~~~- 230 (670)
+.+--+.-++. .+|....+.--. -.|.-+..++. ...+-...-..+..+.+.|+.+-. +..++..-. .++.
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~L 342 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKL 342 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHH
Confidence 55333333333 556555433110 00111100000 111222222345556666665321 122222211 1111
Q ss_pred HHHHHHHhccCCCCC--------CcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHH
Q 005912 231 RKRWVPRRGKTPLDP--------DAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERL 302 (670)
Q Consensus 231 a~~lf~~m~~~gi~P--------d~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l 302 (670)
+-.+...+...|..+ .+.+..|+... +...|-+.|+++.|+.+++.-..+- |+ .++..+ .=
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~--laqh~D~~g~~~~A~~yId~AIdHT------PT--liEly~-~K 411 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF--LAQHYDKLGDYEVALEYIDLAIDHT------PT--LIELYL-VK 411 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHH--HHHHHHHcccHHHHHHHHHHHhccC------ch--HHHHHH-HH
Confidence 122223332222111 22336565443 6688999999999999998766442 21 111111 00
Q ss_pred HHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 303 KKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 303 ~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
.+ +.+++|...+|..++++-.+...++...=.-=..-..++.++++|..
T Consensus 412 aR---------I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 412 AR---------IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HH---------HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 11 11366788888888888777655433211123344556777777664
No 208
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=66.75 E-value=2 Score=36.33 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=0.9
Q ss_pred CCCCCCh
Q 005912 506 DWFPEDP 512 (670)
Q Consensus 506 ~~~~~~~ 512 (670)
-|||+.+
T Consensus 66 rwlwLli 72 (81)
T PF14812_consen 66 RWLWLLI 72 (81)
T ss_dssp -----TT
T ss_pred hhHHHHH
Confidence 5888743
No 209
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.66 E-value=2.5e+02 Score=32.58 Aligned_cols=218 Identities=15% Similarity=0.125 Sum_probs=115.3
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH--H
Q 005912 37 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL--V 114 (670)
Q Consensus 37 I~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L--L 114 (670)
++.+.+.|++++|...-+.+. ..+ .-|...+..-+-++.+.+ +.++|+.+.+.-. -..+++.. =
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil--~~~-pdd~~a~~cKvValIq~~---ky~~ALk~ikk~~--------~~~~~~~~~fE 84 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL--SIV-PDDEDAIRCKVVALIQLD---KYEDALKLIKKNG--------ALLVINSFFFE 84 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH--hcC-CCcHhhHhhhHhhhhhhh---HHHHHHHHHHhcc--------hhhhcchhhHH
Confidence 466667788888888888887 233 445566777777777887 6777775444321 11223332 4
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHh
Q 005912 115 ECFT--KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSR 192 (670)
Q Consensus 115 ~a~a--k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ 192 (670)
.+|| +.+.+|+|...+.-..+. .+. +--.--..+-|.|++++|+.+|+.+.+.+.. .-+.-+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~--~~~----------ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~--- 148 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRL--DDK----------LLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEER--- 148 (652)
T ss_pred HHHHHHHcccHHHHHHHHhccccc--chH----------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHH---
Confidence 4554 678888888777622221 000 1112223356788888888888888777652 112211
Q ss_pred HHHHHHHHHHHH-HHHHHHcCCCHH-----HHHHH--HHcCCcHHHHHHHHHHhcc-------CCCCCCcccchhhhhH-
Q 005912 193 KYRTLVSSWIEP-LQEEAELGYEID-----YIARY--ISEGGLTGERKRWVPRRGK-------TPLDPDAVGFIYSNPM- 256 (670)
Q Consensus 193 ty~~ll~a~~~l-l~~m~~~G~~pd-----~i~~~--~~~~g~~~~a~~lf~~m~~-------~gi~Pd~d~~ty~~LI- 256 (670)
-.+++.....+ .+.+......|+ .+..+ +...|....|.+++..-.+ .+=.-+.++..=-..|
T Consensus 149 -r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 149 -RANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred -HHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 11122111111 112333333333 11122 3456677777777665511 0000001111100111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 257 ETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 257 e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
--++-.+-..|+-++|..++.....+...
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 11445667899999999999999887664
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.45 E-value=37 Score=40.06 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=95.2
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 14 ALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 14 Al~lf~~M~-~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
-+.+++.+. +.|...+-.|.|--+.-+..-|...+|.++-.+.+ .||-..|-.=|.+++..+ ++++-+++
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~---kweeLekf 737 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIK---KWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhh---hHHHHHHH
Confidence 344444444 23444555666778888889999999999999999 899999999999999999 56664444
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 93 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 93 f~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
=..++. ..-|.-.+.+|.+.|+.++|...+..... +.-.+.+|.+.|++.+|-++
T Consensus 738 Akskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 738 AKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------------hHHHHHHHHHhccHHHHHHH
Confidence 444431 35677789999999999999998875432 33588899999999888765
Q ss_pred H
Q 005912 173 L 173 (670)
Q Consensus 173 f 173 (670)
=
T Consensus 793 A 793 (829)
T KOG2280|consen 793 A 793 (829)
T ss_pred H
Confidence 3
No 211
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.77 E-value=2.6e+02 Score=32.33 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFT 118 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a 118 (670)
+.+.|++.+|.-.|+.-.. .. .-+...|-.|=...+.++ +-..|+.-|.+..+ +.|+ ....-.|--.|.
T Consensus 295 lm~nG~L~~A~LafEAAVk--qd-P~haeAW~~LG~~qaENE---~E~~ai~AL~rcl~----LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK--QD-PQHAEAWQKLGITQAENE---NEQNAISALRRCLE----LDPTNLEALMALAVSYT 364 (579)
T ss_pred HHhcCCchHHHHHHHHHHh--hC-hHHHHHHHHhhhHhhhcc---chHHHHHHHHHHHh----cCCccHHHHHHHHHHHh
Confidence 4578899999999988662 11 235677888877778887 56677777777755 6775 455667777888
Q ss_pred HcCCHHHHHHHHHHHHHccCCCc-ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCCchHH-HHhHHH
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTK-VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD-NQPVPPRAMI-LSRKYR 195 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~-v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~-gi~i~p~~~i-~~~ty~ 195 (670)
+.|.-..|...++.-....++-. ++. .+.....-+. ..+.....+....++|-++... +..+.|+.-+ ++..|+
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~-a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVS-AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccc-cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 99988889888877654332100 000 0000000000 1112222233445555544332 2223444321 111121
Q ss_pred H--HHHHHHHHHHHHHHcCCCHH------HHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcC
Q 005912 196 T--LVSSWIEPLQEEAELGYEID------YIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLED 267 (670)
Q Consensus 196 ~--ll~a~~~ll~~m~~~G~~pd------~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G 267 (670)
. -.+.+++.|+.. ....|+ .+=..+.++....+|..-+++..+ +.|+.--+-||--| .|...|
T Consensus 442 ls~efdraiDcf~~A--L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-----S~mNlG 512 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAA--LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-----SCMNLG 512 (579)
T ss_pred cchHHHHHHHHHHHH--HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-----hhhhhh
Confidence 1 112222222221 112222 222446788888888888887754 34665444566443 567788
Q ss_pred CHHHHHHHHHHH
Q 005912 268 GKKYHRKLLRTL 279 (670)
Q Consensus 268 ~~e~A~~Lf~~M 279 (670)
.+++|.+.|-..
T Consensus 513 ~ykEA~~hlL~A 524 (579)
T KOG1125|consen 513 AYKEAVKHLLEA 524 (579)
T ss_pred hHHHHHHHHHHH
Confidence 888888877543
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=65.71 E-value=1.4e+02 Score=35.01 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHH---------HHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATF---------ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf---------~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
.|..+.|.+=+.-|...|.+.+|..+= +.+.+ -..+.-.+++-=++|.+..+.. .-+.+--+++|+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~----~ALeAL~f~~ARkAY~rVRdl~-~L~li~EL~~~k 627 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAM----EALEALDFETARKAYIRVRDLR-YLELISELEERK 627 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHH----HHHhhhhhHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 344555556666666677666664431 11110 0223445677777887776543 333444466777
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHH----
Q 005912 98 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL---- 173 (670)
Q Consensus 98 ~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf---- 173 (670)
+ +|-.|+.+.. ...|+-.|.+.+|-++|.+- |. =|--+.+|.....++.|.+++
T Consensus 628 ~--rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~--------------enRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 628 K--RGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GH--------------ENRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred h--cCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cc--------------hhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 7 7878887753 34566678888888887642 21 122333444333344443333
Q ss_pred --------HHHh--hCCCCCCCchH----HHH---------hHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHcCCcHH
Q 005912 174 --------EAMA--KDNQPVPPRAM----ILS---------RKYRTLVSSWIEPLQEEAELGYEI-DYIARYISEGGLTG 229 (670)
Q Consensus 174 --------~~M~--~~gi~i~p~~~----i~~---------~ty~~ll~a~~~ll~~m~~~G~~p-d~i~~~~~~~g~~~ 229 (670)
+.-. .+++. .|... +.+ ..-++-++-++++-+..-.....| ..+..++.+-....
T Consensus 686 ~~eKKmL~RKRA~WAr~~k-ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIK-EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcC-CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 2111 11221 22211 000 000000111111111111111111 12445666666677
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---cCC--CCHHHHHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAV---LGD--VSESDYVRVEERLKK 304 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~---~g~--~~~~~~~~~l~~l~k 304 (670)
-|-++|..|... ..++......+++.+|..+-+..++.--.+ .+. +....+..+-.+|-
T Consensus 765 LAaeIF~k~gD~---------------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh- 828 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL---------------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH- 828 (1081)
T ss_pred hHHHHHHHhccH---------------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHH-
Confidence 778888887653 124477788999999988887766432111 110 12223333333333
Q ss_pred ccCCCcccccccccCCHHHHHHHHHHHHhCCC
Q 005912 305 LIKGPEQHVLKPKAASKMVVSELKEELDAQGL 336 (670)
Q Consensus 305 ~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi 336 (670)
++|+-.+|..+++.+....+
T Consensus 829 ------------kAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 829 ------------KAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ------------HhcchHHHHHHHHHhhhhhh
Confidence 67778999999998877666
No 213
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=64.56 E-value=51 Score=34.74 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
..++..++..+...| +++.+.+.+.+.... =.-|...|..+|.+|.+.|+...|++.++.+.+
T Consensus 153 ~~~l~~lae~~~~~~---~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACG---RADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcc---cHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456677777777777 666777777777652 246777888888888888888888888877765
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.23 E-value=2.6e+02 Score=31.78 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-----HHHHHHHHHHHHHc--CCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-----TETYNCVIQAYTRA--ESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-----~~tyn~LI~ay~k~--g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..|++..+=.|+-+.+.+.+.+-.+ ..++.-. .-+|+.++..++.. +.. ....|.+++..+.. --|+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~-~~~~a~~lL~~~~~----~yP~ 265 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDV-PLEEAEELLEEMLK----RYPN 265 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHHHHHHHHH----hCCC
Confidence 3444455667899999998887663 3344332 24588888887765 322 58899999999987 3688
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHccC-CCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 107 VKTYALLVE-CFTKYCAVTEAIRHFRALQNYEG-GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 107 ~~Ty~~LL~-a~ak~g~~d~A~~lf~~M~~~g~-~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
..-|...-. .+...|++++|.+.|+....... -+.+.+. .+==+.-.+.-.+++++|...|..+.+.+ .
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l------~~~El~w~~~~~~~w~~A~~~f~~L~~~s---~ 336 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL------CYFELAWCHMFQHDWEEAAEYFLRLLKES---K 336 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH------HHHHHHHHHHHHchHHHHHHHHHHHHhcc---c
Confidence 877755443 34578999999999997553111 1111111 23334555778899999999999999876 5
Q ss_pred CchHH
Q 005912 185 PRAMI 189 (670)
Q Consensus 185 p~~~i 189 (670)
|+..+
T Consensus 337 WSka~ 341 (468)
T PF10300_consen 337 WSKAF 341 (468)
T ss_pred cHHHH
Confidence 87654
No 215
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=63.83 E-value=3.2e+02 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 19 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 19 ~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
.++....+.-+...|-.|--+..++|+++.+-+.|++.. .+..-....|+.+=.+|...| .-..|+.++++-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---~~~~~~~e~w~~~als~saag---~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---PFSFGEHERWYQLALSYSAAG---SDSKAVNLLRESL 384 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhhhhhHHHHHHHHHHHHHhc---cchHHHHHHHhhc
Confidence 334444455567777777777778888888888887765 334455667777777777777 5666777766553
No 216
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=63.74 E-value=1e+02 Score=29.66 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
.+=.-+.+.| +.++|..+|.-... +-|....| -.|-.+|-..|++.+|...|.......+. .|
T Consensus 40 ~~A~~ly~~G---~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---------dp 103 (157)
T PRK15363 40 RYAMQLMEVK---EFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---------AP 103 (157)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------Cc
Confidence 3334456778 78899999988765 55765555 44555566789999999999988775421 12
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.++=.+=.+|.+.|+++.|..-|+.-...
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 25666777899999999999999976554
No 217
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.21 E-value=14 Score=27.98 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=37.8
Q ss_pred ChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHH
Q 005912 577 TIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLC 623 (670)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (670)
-+|+-++|+.|--+.=.+ .+-.++..+...|+-.+.++|+.++..+
T Consensus 2 v~GTlGiL~~Ak~~GlI~-~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 2 VTGTLGILLLAKRRGLIS-EVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred ceehHHHHHHHHHcCChh-hHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 356778888877666666 5888999999999999999999998753
No 218
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.14 E-value=3.6 Score=38.14 Aligned_cols=84 Identities=7% Similarity=0.006 Sum_probs=56.7
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
+|+.|.+.+.+..+..+++.+...+...+...+|.|+..|++.+.+++...+++... . .-...++.-|-+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----N-----YDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----S-----S-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----c-----cCHHHHHHHHHhc
Confidence 467777888888888889888877767788889999999999988888888877333 1 2223455555555
Q ss_pred CCcccHHHHHHHHHHh
Q 005912 81 ESYDRVQDVAELLGMM 96 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM 96 (670)
| ..++|.-++..+
T Consensus 84 ~---l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 G---LYEEAVYLYSKL 96 (143)
T ss_dssp T---SHHHHHHHHHCC
T ss_pred c---hHHHHHHHHHHc
Confidence 5 444544444443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.15 E-value=2.1e+02 Score=30.08 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
++++..+.-.|.+.-...++++.. ...-+-+++.-..|.+--.+.| +.+.|...|+.... ..-+.|..+++.+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~MQ~G---D~k~a~~yf~~vek--~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRISMQIG---DIKTAEKYFQDVEK--VTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH--HHhhhhccchhHH
Confidence 555555555577888888888887 4454566777777777777888 78888888886655 4444555666555
Q ss_pred H-----HHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 114 V-----ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 114 L-----~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+ ..|.-+.++..|.+.|.++........+.. ---+|+-.| .|+...|.+.++.|....
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~-------NnKALcllY--lg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN-------NNKALCLLY--LGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhh-------chHHHHHHH--HHHHHHHHHHHHHHhccC
Confidence 4 234456677778888877765433322211 112455444 478899999999997764
No 220
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.93 E-value=1.9e+02 Score=30.25 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=53.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA-TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya-k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
..|+.+.|..+++.+..+ + |...-.-.|=.++. -.|..++|.++++.+. +.. +-|.++|--=|...-..| +
T Consensus 64 d~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL--~dd-pt~~v~~KRKlAilka~G---K 135 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLL--EDD-PTDTVIRKRKLAILKAQG---K 135 (289)
T ss_pred HhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHh--ccC-cchhHHHHHHHHHHHHcC---C
Confidence 345555555555555543 1 33221111111111 2355555555555555 222 334444443333333333 2
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
--+|++-+.+... .+.-|...|.-|-..|...|++..|.-.++++.-
T Consensus 136 ~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 136 NLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3344444444443 2334555555555555555555555555555543
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=61.62 E-value=1.4e+02 Score=33.72 Aligned_cols=144 Identities=8% Similarity=0.012 Sum_probs=85.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH-
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFH------FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT- 78 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~t------yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~- 78 (670)
-+.+++.+|..+|.+.-.. +..+.+. -+-+|++|... +++.....+....+ ..| ...|-.|..++.
T Consensus 17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~-~~~----~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ-QFG----KSAYLPLFKALVA 89 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH-hcC----CchHHHHHHHHHH
Confidence 4678999999999988754 2233233 37888888854 45555555555543 233 233555555543
Q ss_pred -HcCCcccHHHHHHHHHHhHhccCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 79 -RAESYDRVQDVAELLGMMVEDHKRLQP------------NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 79 -k~g~~~~~~eAl~lf~eM~~~~~gi~P------------d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+.+.+..+-+++..+.+-+. +-+| |-+-=+..+.++...|.+.+|+.+++.|..+-++....
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~---~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~-- 164 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIK---GTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE-- 164 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhc---ccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc--
Confidence 44533334444444443322 2222 22222567788899999999999999998765542111
Q ss_pred CCCCchHHHHHHHHHHHc
Q 005912 146 EGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~ 163 (670)
...++||-++-+|+|+
T Consensus 165 --w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 165 --WNSDMYDRAVLMLSRS 180 (549)
T ss_pred --ccHHHHHHHHHHHhHH
Confidence 1122899988888775
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=61.11 E-value=15 Score=26.67 Aligned_cols=30 Identities=20% Similarity=0.023 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+|..+-..|.+.|++++|.++|+...+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 478889999999999999999999998875
No 223
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=59.90 E-value=65 Score=31.43 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
...+..+-..|++.|+.+.|.+.|.++. .....|. ...+-.+|......+++..+..-+.-...+.+ .+-.++.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~--~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~--~~~d~~~ 111 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRAR--DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE--KGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--ccchHHH
Confidence 3577899999999999999999999998 4444443 45567778888888854433333333333333 2111111
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 005912 108 KTYALLVEC--FTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 108 ~Ty~~LL~a--~ak~g~~d~A~~lf~~M~~ 135 (670)
..--.+..| +...+++..|-+.|-....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 111111222 2246788888888766543
No 224
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=59.41 E-value=11 Score=45.17 Aligned_cols=77 Identities=17% Similarity=0.030 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCChhhhhcCCCCCCCcchhh---hhhhHHHHH--------HHHhcccCCCcHhHHHHhhhccCcCCC
Q 005912 340 GTRNVLYQRVQKARRINRSRGRPLWVPPVEEEE---EEVDEEVDE--------LISRIKLEEGNTEFWKRRFLGEGLNGR 408 (670)
Q Consensus 340 ~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~---~~vdeE~~~--------li~~~~~~~~~~~~w~~~llg~~~~~~ 408 (670)
.||.-++.+.|++-...........+|-+..|. .+-|+|+.+ |+.+.|.+ -.-+|.. +++-|...-
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e--i~p~~pe-i~~l~l~yi 307 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE--ILPHVPE-IINLCLSYI 307 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh--hcccchH-HHHHHHHHh
Confidence 577777777777766666666667777777776 445555543 44444422 2235664 666666665
Q ss_pred CCccccccccc
Q 005912 409 HDKAVEMDESE 419 (670)
Q Consensus 409 ~~~~~~~~~~~ 419 (670)
.-+|+...+.+
T Consensus 308 sYDPNy~yd~~ 318 (1233)
T KOG1824|consen 308 SYDPNYNYDTE 318 (1233)
T ss_pred ccCCCCCCCCc
Confidence 65666655443
No 225
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.05 E-value=1.3e+02 Score=31.85 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=73.2
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
+.+++ +..+|+..|.+-.+ +.| |.+-|..--.+|++.|..+.|.+=.+...+.. |... .+|..
T Consensus 91 ~m~~~---~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~ys-------kay~R 154 (304)
T KOG0553|consen 91 LMKNK---DYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYS-------KAYGR 154 (304)
T ss_pred HHHhh---hHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHH-------HHHHH
Confidence 34556 68899999999876 556 56777889999999999999988776655421 1100 17888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 201 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~ 201 (670)
|=.+|.-.|++++|.+.|+.-..- .|+-- +|..-++.+
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLel----dP~Ne----~~K~nL~~A 192 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALEL----DPDNE----SYKSNLKIA 192 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhcc----CCCcH----HHHHHHHHH
Confidence 989999999999999998876543 44432 266655555
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=57.90 E-value=2e+02 Score=28.41 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
+.+.| +..+|.+.|..+.....+-.--....-.+..++-+.|+.+.|...++...+.-+..... .+..+
T Consensus 15 ~~~~g---~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--------~~A~Y 83 (203)
T PF13525_consen 15 ALQQG---DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--------DYALY 83 (203)
T ss_dssp HHHCT----HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--------HHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------hhHHH
Confidence 34556 57788888888876321111122344456677788888888888888877643321111 23333
Q ss_pred HHHHHH-------------cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHH
Q 005912 157 LRALCR-------------EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ-EEAELGYEIDYIARYI 222 (670)
Q Consensus 157 I~ay~k-------------~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~-~m~~~G~~pd~i~~~~ 222 (670)
+.+.+. .+...+|...|+.+.++- |++- |.......+..+. .+.+..+ .+..++
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----P~S~-----y~~~A~~~l~~l~~~la~~e~---~ia~~Y 151 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----PNSE-----YAEEAKKRLAELRNRLAEHEL---YIARFY 151 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----TTST-----THHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----cCch-----HHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 333322 233457888888887764 3321 2222222211111 1111111 244566
Q ss_pred HcCCcHHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHHHHhcCCHHHH
Q 005912 223 SEGGLTGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYH 272 (670)
Q Consensus 223 ~~~g~~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A 272 (670)
-+.|....|..-|+.+.+ + |+. ...--.+..++.+|-+-|..+.|
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y---p~t--~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY---PDT--PAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS---TTS--HHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHC---CCC--chHHHHHHHHHHHHHHhCChHHH
Confidence 777788888877777765 4 444 22222223466777777776644
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.53 E-value=2.4e+02 Score=29.34 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=106.8
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChHHHHHHHHHchh------CCCCCCCC-----
Q 005912 6 CKAGDHSNALEIAYEMEAAG--RMATT------FHFNHLLSCQATCGIPEVAFATFENMEY------GEDYMKPD----- 66 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~G--v~Pd~------~tyn~LI~~yak~G~~e~A~~lf~~M~~------~~~gi~Pd----- 66 (670)
.+.|+++.|..++.+.+..- ..|+. ..||.=...+.+..+++.|...+++--. ......|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 47899999999999887543 33432 3456666666666466666555544321 01123344
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
..+...|+.+|...+..+...+|.++++.+... .|+ ..+|-.-|..+.+.++.+.+.+++..|+..-.-+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~--- 156 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES--- 156 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc---
Confidence 467889999999999888888899999988652 233 456667778888899999999999999985321211
Q ss_pred CCCCchHHHHHHHHH---HHcCCHHHHHHHHHHHhhCCC
Q 005912 146 EGNFGDPLSLYLRAL---CREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay---~k~G~~eeA~~vf~~M~~~gi 181 (670)
.+..++..+ .... ...|...++.+....+
T Consensus 157 ------~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 157 ------NFDSILHHIKQLAEKS-PELAAFCLDYLLLNRF 188 (278)
T ss_pred ------hHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHh
Confidence 566666666 3333 3456666665555444
No 228
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.60 E-value=1.6e+02 Score=33.68 Aligned_cols=141 Identities=15% Similarity=0.202 Sum_probs=85.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~LI~ay~k~g 81 (670)
+|.+.++++.|+..|.+-...-..|+.. .+....+++....+... -+.|.. ..-+. =+.+.+.|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a----~~~pe~A~e~r~k-Gne~Fk~g 372 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA----YINPEKAEEEREK-GNEAFKKG 372 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH----hhChhHHHHHHHH-HHHHHhcc
Confidence 4556666666666666644433333322 12333444444444433 123332 11111 34455667
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+...|++-|.++.. .. .-|...|+..--||.+.|.+..|..=-+...+... ..+.+|.
T Consensus 373 ---dy~~Av~~YteAIk--r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p----------------~~~kgy~ 430 (539)
T KOG0548|consen 373 ---DYPEAVKHYTEAIK--RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP----------------NFIKAYL 430 (539)
T ss_pred ---CHHHHHHHHHHHHh--cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc----------------hHHHHHH
Confidence 68899999999987 33 34678999999999999999999887666655321 3566777
Q ss_pred HcC-------CHHHHHHHHHHHhhCC
Q 005912 162 REG-------RIIELLEALEAMAKDN 180 (670)
Q Consensus 162 k~G-------~~eeA~~vf~~M~~~g 180 (670)
|.| +++.|.+.|.+-.+.+
T Consensus 431 RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 665 4566666666655544
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=1.9e+02 Score=30.58 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHccCCCcc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT---KYCAVTEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a---k~g~~d~A~~lf~~M~~~g~~~~v 142 (670)
|...|-.|=..|.+.| +...|..-|..-.+. .|=. ...+..+-.++. ..-.-.++..+|+++.+... .++
T Consensus 155 d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL-~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~i 227 (287)
T COG4235 155 DAEGWDLLGRAYMALG---RASDALLAYRNALRL-AGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANI 227 (287)
T ss_pred CchhHHHHHHHHHHhc---chhHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccH
Confidence 6788999999999999 677888888877652 3333 333344433333 33345689999999987532 222
Q ss_pred cccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
. +-..|-..+...|++.+|...|+.|.+..
T Consensus 228 r--------al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 228 R--------ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred H--------HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 2 56667778999999999999999999876
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=55.97 E-value=1.3e+02 Score=35.36 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005912 103 LQPNVKTYALLVECFTKYCAVTEAIRH 129 (670)
Q Consensus 103 i~Pd~~Ty~~LL~a~ak~g~~d~A~~l 129 (670)
+.|..+.|++=+..|...|.+++|.++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcc
Confidence 566677788888888999998888775
No 231
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.94 E-value=81 Score=31.41 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCCcccHHHHH
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAESYDRVQDVA 90 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g~~~~~~eAl 90 (670)
++++.+.+++.. +..-+-.....|++++|..-++.+...-..++.-...|+.+.. |||.++.. ..-+|.
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~Q-EyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQ-EYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHH-HHHHHH
Confidence 455555555543 5666666778899999998888876311123334566777777 77877743 366777
Q ss_pred HHHHHhHhccCCCCCCHH----HHHHHHHHHH--------------HcCCHHHHHHHHHHHHH
Q 005912 91 ELLGMMVEDHKRLQPNVK----TYALLVECFT--------------KYCAVTEAIRHFRALQN 135 (670)
Q Consensus 91 ~lf~eM~~~~~gi~Pd~~----Ty~~LL~a~a--------------k~g~~d~A~~lf~~M~~ 135 (670)
-+|.-... +-.|... .+..-|.|.+ +.|+++.|.++++-|..
T Consensus 90 ~l~~~l~~---~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKD---GRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhc---CCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77776664 3334332 2333444444 57888999998888887
No 232
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.78 E-value=90 Score=29.60 Aligned_cols=93 Identities=11% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 005912 101 KRLQPNVKT--YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR-IIELLEALEAMA 177 (670)
Q Consensus 101 ~gi~Pd~~T--y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~-~eeA~~vf~~M~ 177 (670)
.+..++..+ .+++|.-.+..+++....++++.+...... .+. .-...++|++++.+.++..- ---+..+|.-|+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~-~~~--~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTD-NII--GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHH-HHh--hhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 566666544 588998889999999999999888432110 111 11122389999999987777 556888999999
Q ss_pred hCCCCCCCchHHHHhHHHHHHHHHH
Q 005912 178 KDNQPVPPRAMILSRKYRTLVSSWI 202 (670)
Q Consensus 178 ~~gi~i~p~~~i~~~ty~~ll~a~~ 202 (670)
+.+..++|.. |..++++|.
T Consensus 108 ~~~~~~t~~d------y~~li~~~l 126 (145)
T PF13762_consen 108 KNDIEFTPSD------YSCLIKAAL 126 (145)
T ss_pred HcCCCCCHHH------HHHHHHHHH
Confidence 9877666664 778888773
No 233
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.77 E-value=1.6e+02 Score=31.20 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=66.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~ 82 (670)
+.+.+++.+|+..|.+-.+. .| |.+-|.-=-.+|++-|.++.|.+=-+.-.. +.|+ .-+|..|=.+|...|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~g- 163 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALG- 163 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccC-
Confidence 45677888888888877763 44 455556666778888888888776655441 2333 456777777888888
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 115 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~ 115 (670)
+..+|++.|..-.+ +.|+..+|-.=|.
T Consensus 164 --k~~~A~~aykKaLe----ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 --KYEEAIEAYKKALE----LDPDNESYKSNLK 190 (304)
T ss_pred --cHHHHHHHHHhhhc----cCCCcHHHHHHHH
Confidence 67777777777654 7788777755443
No 234
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=54.57 E-value=10 Score=45.54 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCCCCchh----HHHHHHHHHHHHHHHHcCCc
Q 005912 548 RPPQKWSQ----EWEVELAIQIMLKVIELGGT 575 (670)
Q Consensus 548 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 575 (670)
+-|.-|-= --|.+.|+.||+|.++++-|
T Consensus 163 kDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t 194 (1024)
T KOG1999|consen 163 KDPNLWIVKCKIGREREVAFCLMRKFIELDKT 194 (1024)
T ss_pred CCCCeeEEEeccccHHHHHHHHHHHHHhhccc
Confidence 34555542 13455599999999999966
No 235
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=54.47 E-value=19 Score=29.05 Aligned_cols=21 Identities=24% Similarity=0.503 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhCCCCCch
Q 005912 629 LDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~ 649 (670)
|..|-.|++.||..||--|.+
T Consensus 33 ynrAariid~lE~~GiV~p~~ 53 (63)
T smart00843 33 YNRAARLIDQLEEEGIVGPAN 53 (63)
T ss_pred hhHHHHHHHHHHHCcCCCCCC
Confidence 567889999999999877654
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.91 E-value=1.3e+02 Score=28.38 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=51.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMA---TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~P---d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
..+.|+++.|.+.|+.+..+ +.. ..-..=-|+.+|.+.++++.|...+++... .+.-.|+ +-|-..+.|++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-LhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-LHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCCC-ccHHHHHHHHHHHH
Confidence 35678999999999888865 222 223345577888899999999999988764 3444454 56777777766554
No 237
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.32 E-value=37 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
-|+.|+..|-..|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 499999999999999999999999877
No 238
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=53.17 E-value=17 Score=29.60 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhCCCCCchh
Q 005912 629 LDAAVAIVADMETTGIAVPDQT 650 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~ 650 (670)
+..|-+|++.||..||--|.+.
T Consensus 34 ynrAariid~LE~~GiVs~~~~ 55 (65)
T PF09397_consen 34 YNRAARIIDQLEEEGIVSPANG 55 (65)
T ss_dssp HHHHHHHHHHHHHCTSBE---T
T ss_pred HHHHHHHHHHHHHCCCCCCCCC
Confidence 4677899999999999766553
No 239
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=52.17 E-value=7.4 Score=47.10 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 005912 514 EAFKEMR 520 (670)
Q Consensus 514 ~~~~~~~ 520 (670)
++|+..+
T Consensus 743 ~~Fk~r~ 749 (784)
T PF04931_consen 743 AIFKERK 749 (784)
T ss_pred HHHHHHH
Confidence 3444443
No 240
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.47 E-value=45 Score=36.02 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
-|.+.| ..++|+.+|..-.. +.| |.++|..-..||.+...+..|+.=...... .=.
T Consensus 106 ~yFKQg---Ky~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia----------------Ld~ 162 (536)
T KOG4648|consen 106 TYFKQG---KYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA----------------LDK 162 (536)
T ss_pred hhhhcc---chhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH----------------hhH
Confidence 366777 78899999987543 567 899999999999999998887766555544 234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 155 LYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 155 ~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+.+|.|.|.-.+++..+.+-.+
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578889888776666666655543
No 241
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.30 E-value=1.4e+02 Score=29.83 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH-HHHHcC
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR-ALCREG 164 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~-ay~k~G 164 (670)
-++++++-.++.. ++...-...+.|++++|..-++.+.+.--...-. .+ .|+-+.. +||..+
T Consensus 19 REE~l~lsRei~r-----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~--l~----~~pel~~ag~~~~a 81 (204)
T COG2178 19 REEALKLSREIVR-----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL--LA----GFPELYFAGFVTTA 81 (204)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--Hh----hhHHHHHHHhhcch
Confidence 3567777777654 4555556678888999988888776531111100 01 5666665 677776
Q ss_pred C--HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 165 R--IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 165 ~--~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
. +-+|.-+|.-....+++ +|.. +++.+...+.+..++..++.+.- .. ....|.++.|.++++-|..
T Consensus 82 ~QEyvEA~~l~~~l~~~~~p-s~~E--L~V~~~~YilGl~D~vGELrR~~------le-~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 82 LQEYVEATLLYSILKDGRLP-SPEE--LGVPPIAYILGLADAVGELRRHV------LE-LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CHHH--cCCCHHHHHHHHHHHHHHHHHHH------HH-HHHhccHHHHHHHHHHHHH
Confidence 5 55777777777666653 3332 22334445666665555543321 11 1344678888888888753
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.02 E-value=1.7e+02 Score=30.76 Aligned_cols=125 Identities=9% Similarity=0.025 Sum_probs=83.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH-----HHHcCC
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-----YTRAES 82 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a-----y~k~g~ 82 (670)
.|.+.-.+.++.+..+..-.-++..-..|..+-.+.|+.+.|...|+... ...-..|..+++.++.- |.-.+
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve--k~~~kL~~~q~~~~V~~n~a~i~lg~n- 266 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE--KVTQKLDGLQGKIMVLMNSAFLHLGQN- 266 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhhhhccchhHHHHhhhhhheeccc-
Confidence 44555566677777766555677777888888889999999999999776 33335566666665542 22233
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
+..+|.+.|.+... .. .-|.+.-|.=.-+..-.|+...|.+.+..|...-+.+
T Consensus 267 --n~a~a~r~~~~i~~--~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 267 --NFAEAHRFFTEILR--MD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred --chHHHHHHHhhccc--cC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 46778888888765 22 1233444443344455789999999999998865444
No 243
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=50.68 E-value=3.3e+02 Score=28.87 Aligned_cols=153 Identities=11% Similarity=0.157 Sum_probs=101.3
Q ss_pred HcCCCCCHHHHHHHHHHHH----------------HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 23 AAGRMATTFHFNHLLSCQA----------------TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 23 ~~Gv~Pd~~tyn~LI~~ya----------------k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
..|..++..-+-.+++... +...+.+|..+|+.... +..+--|...-..|++......+- ..
T Consensus 105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~-~~~Ii~d~evislLL~sMv~~~~~-~l 182 (292)
T PF13929_consen 105 SMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNP-DESIIFDEEVISLLLKSMVIDENT-KL 182 (292)
T ss_pred HcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCc-ccceeeChHHHHHHHHHHHhcccc-ch
Confidence 4567766666655555522 22345678888875541 134677888888999998873321 23
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
..-.++.+-+... .+-.++..+..++|..+++.+++..-.++......... ++..+.+|..+|+.....|+.
T Consensus 183 ~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~-------~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 183 NALYEVVDFLVST-FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSV-------PGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred hhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCC-------CCCCCchHHHHHHHHHHcCCH
Confidence 3344444444442 45778899999999999999999999999887654310 222223999999999999998
Q ss_pred HHHHHHHHH-----HhhCCCCCCC
Q 005912 167 IELLEALEA-----MAKDNQPVPP 185 (670)
Q Consensus 167 eeA~~vf~~-----M~~~gi~i~p 185 (670)
.-...+.++ +++.++.+++
T Consensus 255 ~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 255 EVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred HHHHHHhhCCCeEEeeecCCcCCH
Confidence 777666653 2444554444
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=50.33 E-value=27 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFEN 55 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~ 55 (670)
|+.|-..|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=50.06 E-value=4.3e+02 Score=29.97 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
+.-+..+...| +.-.+-+|.-|.. +-|. .+..+++..+-.|+-+.+++.+....+.+. ...
T Consensus 162 ~~~~d~~~~sg----v~~G~G~f~L~lS----lLPp--~~~kll~~vGF~gdR~~GL~~L~~~~~~~~---------i~~ 222 (468)
T PF10300_consen 162 TKPIDEFFESG----VYFGFGLFNLVLS----LLPP--KVLKLLSFVGFSGDRELGLRLLWEASKSEN---------IRS 222 (468)
T ss_pred cchhHHHHHHh----HHHHHHHHHHHHH----hCCH--HHHHHHhhcCcCCcHHHHHHHHHHHhccCC---------cch
Confidence 34566666666 5556667777765 3343 456788888888999999999987665321 111
Q ss_pred h-------HHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 005912 151 D-------PLSLYLRALCR----EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA 219 (670)
Q Consensus 151 d-------tyn~LI~ay~k----~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~ 219 (670)
. .|..++..++- ....+.|.+++..+.++- |+..+.- .+.+
T Consensus 223 ~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~s~lfl-~~~g----------------------- 274 (468)
T PF10300_consen 223 PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PNSALFL-FFEG----------------------- 274 (468)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CCcHHHH-HHHH-----------------------
Confidence 1 67777776664 456788999999998874 4543311 0111
Q ss_pred HHHHcCCcHHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 220 RYISEGGLTGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 220 ~~~~~~g~~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
+++...|.+++|...|+.... ..--|...|..+--+. -.+.-.+++++|...|..+.+.+-- +...|.-+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~----w~~~~~~~w~~A~~~f~~L~~~s~W-----Ska~Y~Y~ 345 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA----WCHMFQHDWEEAAEYFLRLLKESKW-----SKAFYAYL 345 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH----HHHHHHchHHHHHHHHHHHHhcccc-----HHHHHHHH
Confidence 234556788888888886542 1112333444443332 5667789999999999999886543 45666655
Q ss_pred HHHHHHccCCCcccccccccCCHHHHHHHHHHH
Q 005912 299 EERLKKLIKGPEQHVLKPKAASKMVVSELKEEL 331 (670)
Q Consensus 299 l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M 331 (670)
.-.|.-+... . .......++|.++|.+.
T Consensus 346 ~a~c~~~l~~----~-~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGR----E-EEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhcc----c-hhhhhhHHHHHHHHHHH
Confidence 5555443220 0 00112236777777655
No 246
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.88 E-value=1.1e+02 Score=32.74 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEAA---GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~---Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
..+++.+...+-+++.. -..|+...| +.+.. +-.-+++++..++..=. +.|+-||.+|++.||..+.+.+
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npI--qYGiF~dqf~~c~l~D~flk~~--- 149 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPI--QYGIFPDQFTFCLLMDSFLKKE--- 149 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcc--hhccccchhhHHHHHHHHHhcc---
Confidence 45678888888777753 122332222 22222 33457789999988877 7999999999999999999999
Q ss_pred cHHHHHHHHHHhHh
Q 005912 85 RVQDVAELLGMMVE 98 (670)
Q Consensus 85 ~~~eAl~lf~eM~~ 98 (670)
++.+|.++.-.|..
T Consensus 150 n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 150 NYKDAASVVTEVMM 163 (418)
T ss_pred cHHHHHHHHHHHHH
Confidence 67788877777655
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.88 E-value=2.2e+02 Score=29.78 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
-|+.-+..|- .| +...|..-|..-.... ....|| .+=-|-.++...|+.+.|..+|..+.+.... .
T Consensus 144 ~Y~~A~~~~k-sg---dy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s 211 (262)
T COG1729 144 LYNAALDLYK-SG---DYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPK------S 211 (262)
T ss_pred HHHHHHHHHH-cC---CHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCC------C
Confidence 5888887664 56 4667777777776521 112333 3445889999999999999999999875322 2
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
-+-|+.+=-|-....+.|+.++|...|++..++-
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2334567777888899999999999999998875
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=49.81 E-value=3.9e+02 Score=29.45 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=96.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--CCHHHH-HHHHHHHHH---cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRM--ATTFHF-NHLLSCQAT---CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 76 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~--Pd~~ty-n~LI~~yak---~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a 76 (670)
-+|-...+++...++.+.|...-.. ++.... --..-++-| .|+.++|..++..+. ...-.++..||..+-.-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l--~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL--ESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH--hccCCCChHHHHHHHHH
Confidence 3577788889999999988864111 111110 111223335 789999999998855 34456777777777666
Q ss_pred HHHc----C--CcccHHHHHHHHHHhHhccCCCCCCHHH---HHHHHHHHHHcC-CHHHHHHHH----HHHHHccCCCcc
Q 005912 77 YTRA----E--SYDRVQDVAELLGMMVEDHKRLQPNVKT---YALLVECFTKYC-AVTEAIRHF----RALQNYEGGTKV 142 (670)
Q Consensus 77 y~k~----g--~~~~~~eAl~lf~eM~~~~~gi~Pd~~T---y~~LL~a~ak~g-~~d~A~~lf----~~M~~~g~~~~v 142 (670)
|-.. + +-+..+.|+..|.+--+ +.||.++ +.+|+....... .-.+..++- ..+.++|..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~--- 299 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL--- 299 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc---
Confidence 5421 1 12246778888876543 4565543 333444333211 111233332 112222221
Q ss_pred cccCCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pd--tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....+ .+.+++.++.-.|+.++|.+..+.|.+..
T Consensus 300 ----~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 ----EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ----cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 11122 78899999999999999999999998775
No 249
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.43 E-value=6.8 Score=46.56 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHH
Q 005912 320 SKMVVSELKEELD 332 (670)
Q Consensus 320 ~~~~A~~l~~~M~ 332 (670)
+..+|...|++..
T Consensus 1255 R~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFT 1267 (1516)
T ss_pred ccHHHHhhhhhhe
Confidence 3345555665554
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=49.32 E-value=29 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
+|+.|=+.|.+.|++++|..+|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999999999999999984
No 251
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=48.97 E-value=2.9e+02 Score=27.67 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcc
Q 005912 63 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 63 i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v 142 (670)
+.|++..--.|-.++.+.| +..+|...|.+-.. .-+.-|....-.+-++....+++..|...++.+.+...
T Consensus 85 ~ApTvqnr~rLa~al~elG---r~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---- 155 (251)
T COG4700 85 IAPTVQNRYRLANALAELG---RYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---- 155 (251)
T ss_pred hchhHHHHHHHHHHHHHhh---hhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----
Confidence 4677777777888999999 78899999999886 44555777777888888889999999999999887542
Q ss_pred cccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|++--.+-+.|.-.|+...|..-|+.....-
T Consensus 156 ---a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 ---AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred ---ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 45566677778899999999999999999887664
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=48.88 E-value=2.4e+02 Score=26.67 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
|....|+.=..++-+ | +..+|.+.|+.+......-.-....---|+.+|-+.++++.|...++..++..+...-+
T Consensus 9 ~~~~ly~~a~~~l~~-~---~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v- 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQK-G---NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV- 83 (142)
T ss_pred CHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-
Confidence 344556666665544 4 47888888888876321112234555668888899999999999999888865432222
Q ss_pred cCCCCchHHHHHHHHHHHcCCHH
Q 005912 145 NEGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~e 167 (670)
.|-..+.|++.-...+
T Consensus 84 -------dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 -------DYAYYMRGLSYYEQDE 99 (142)
T ss_pred -------cHHHHHHHHHHHHHhh
Confidence 5777777777655544
No 253
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=47.64 E-value=5.1 Score=44.12 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.5
Q ss_pred chhHHHHHHHHHHHH
Q 005912 627 GELDAAVAIVADMET 641 (670)
Q Consensus 627 ~~~~~~~~~~~~~~~ 641 (670)
.+..-||.||.=||.
T Consensus 383 ~H~RgaIDIVkGLEk 397 (458)
T PF10446_consen 383 THTRGAIDIVKGLEK 397 (458)
T ss_pred Ccccccccceechhh
Confidence 355566666655553
No 254
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=47.62 E-value=3.7e+02 Score=28.50 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
-|...|--|=..|.+.|+...|..-|.+-.+ -. .+|...+..+-.++....+-..-.++..+|+++.. ..| |
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~----~D~~~ 226 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR-LA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA----LDPAN 226 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----cCCcc
Confidence 4778888999999999999999999998763 22 34555566666666555444467789999999976 445 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
..+-..|-.++...|++.+|...++.|.+...
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55667777889999999999999999998644
No 255
>PLN02789 farnesyltranstransferase
Probab=47.51 E-value=3.9e+02 Score=28.70 Aligned_cols=132 Identities=9% Similarity=0.048 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
+++.+-..+...+..++|..+...... +.|+ ...|+.-=..+...|. ..++++.+++++.. .. .-+..+|
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~--~n-pknyqaW 109 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR----LNPGNYTVWHFRRLCLEALDA--DLEEELDFAEDVAE--DN-PKNYQIW 109 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcch--hHHHHHHHHHHHHH--HC-CcchHHh
Confidence 445666667778899999999999873 2343 3456555445555552 46899999999987 22 2344567
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 111 ALLVECFTKYCAV--TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 111 ~~LL~a~ak~g~~--d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
+..-..+.+.|.. +.+..++..+.+..... .. +|+-.--.+.+.|+++++++.++.+.+.+.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~--------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKN-YH--------AWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-HH--------HHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 7665555666653 66788887777643221 11 788888888888999999999999999875
No 256
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=47.49 E-value=4.2 Score=37.65 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=62.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 35 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 35 ~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
.+|+.|-+.+.+.....+++.+. ..+..-+....|.++..|++.+ ..+...+++... .+ +-...++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~--~~~~~~~~~~~~~L~~ly~~~~---~~~~l~~~L~~~----~~-----yd~~~~~ 77 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV--KENKENNPDLHTLLLELYIKYD---PYEKLLEFLKTS----NN-----YDLDKAL 77 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH--HTSTC-SHHHHHHHHHHHHCTT---TCCHHHHTTTSS----SS-----S-CTHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH--hcccccCHHHHHHHHHHHHhcC---CchHHHHHcccc----cc-----cCHHHHH
Confidence 45677777888888888888888 4555577899999999999998 345555555521 22 3335677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcc
Q 005912 115 ECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 115 ~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..|-+.|.++.+.-++..+....
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~ 100 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHD 100 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHT
T ss_pred HHHHhcchHHHHHHHHHHcccHH
Confidence 88888888888888887766543
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=47.26 E-value=35 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
.++|.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666665543
No 258
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=47.05 E-value=35 Score=31.48 Aligned_cols=67 Identities=21% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAI 635 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (670)
|..-|.++++.+..+||+|+ .-..++ .....+|+...+.=..=..+.|.+++..|.+.|....+.-+
T Consensus 46 E~~HA~~~~~~l~~l~g~~~----------~~~~~~-~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f 112 (134)
T cd01041 46 EKEHAKGHFKLLKGLGGGDT----------GPPIGI-GDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSF 112 (134)
T ss_pred HHHHHHHHHHHHhcCCCCCc----------CCCCCc-chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44558999999999999999 112233 33567777776655444568999999999999998877643
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=46.82 E-value=81 Score=27.90 Aligned_cols=44 Identities=7% Similarity=-0.085 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 14 Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
+.+-+..+....+.|+...-++-+.+|-|.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444445566666666666666666666666666666555
No 260
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=46.75 E-value=2e+02 Score=35.42 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
..|..|=.-|+..-+...|...|+...+ -. .-|...+......|++.. ..+.|+.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFe--LD-atdaeaaaa~adtyae~~---~we~a~~I 548 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFE--LD-ATDAEAAAASADTYAEES---TWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-chhhhhHHHHHHHhhccc---cHHHHHHH
Confidence 3455555556655566666666665541 00 123455666666666666 45555544
No 261
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=46.54 E-value=80 Score=28.19 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=22.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 18 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 18 f~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
+..+-...+.|......+.|.+|-|.+++..|.++|+-++
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344566666666666666666666666666666665
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.41 E-value=39 Score=23.41 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
++|.|-..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 789999999999999999999997654
No 263
>PRK10635 bacterioferritin; Provisional
Probab=46.01 E-value=21 Score=34.24 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 630 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (670)
|.+=|-+|.++++.+||+|++..-..+ +.+ .....+|+.-..+-. -....|.++|..|-..|.+.
T Consensus 51 Em~HA~~l~eRIl~LgG~P~~~~~~~~-----~~g--~~v~eml~~dl~~E~-~ai~~y~e~i~~a~~~~D~~ 115 (158)
T PRK10635 51 EMKHADKYIERILFLEGIPNLQDLGKL-----NIG--EDVEEMLRSDLRLEL-EGAKDLREAIAYADSVHDYV 115 (158)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCC-----CCC--CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHH
Confidence 334488999999999999999876332 211 124444444433332 34678999999998866554
No 264
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=46.00 E-value=4.8 Score=38.33 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=2.9
Q ss_pred ccCcCCCC
Q 005912 402 GEGLNGRH 409 (670)
Q Consensus 402 g~~~~~~~ 409 (670)
|++-.|-.
T Consensus 95 GsGPVhis 102 (149)
T PF03066_consen 95 GSGPVHIS 102 (149)
T ss_dssp SSS-EEEE
T ss_pred cCCCEEee
Confidence 44444433
No 265
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=1.4e+02 Score=34.10 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=72.8
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECF 117 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ 117 (670)
+.+..|+++.|..+|-+-.. -. .+|.+.|.-=..+|+..| +..+|++==.+- ..+.|++ ..|+-.=.++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~--l~-p~nhvlySnrsaa~a~~~---~~~~al~da~k~----~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIM--LS-PTNHVLYSNRSAAYASLG---SYEKALKDATKT----RRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred hhcccccHHHHHHHHHHHHc--cC-CCccchhcchHHHHHHHh---hHHHHHHHHHHH----HhcCCchhhHHHHhHHHH
Confidence 44567899999999887552 11 457888999999999999 677776544443 4478886 5788888888
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
...|++++|+.-|.+=.+....... .++-|.+++
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~---------L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQ---------LKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHH---------HHHhHHHhh
Confidence 8889999999998876654322221 455666665
No 266
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=43.08 E-value=2.5e+02 Score=25.19 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
|++=-..|....+++ .-+..+-+..+.. ..+.|+..+..+.|.||-+.+++..|.++|+-++.+
T Consensus 11 F~ary~~~F~~~~iD-~we~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDID-GWELRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcccc-HHHHHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333334444444332 4455555666666 778899999999999999999999999999988754
No 267
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.21 E-value=31 Score=36.58 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=40.4
Q ss_pred cHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCchhHHHHhhhh
Q 005912 615 LYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSR 658 (670)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (670)
-|+.+|..-++.|.+++|+.||..=|+.|++-.-+|.-+.+..+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~k 302 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKGK 302 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhcC
Confidence 48899999999999999999999999999999999988877654
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=41.84 E-value=4.2e+02 Score=27.53 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred HHcCChHHHHHHHHHchhCCC-CCCCC------HHHHHHHHHHHHHcCCcc----cHHHHHHHHHHhHhccCCCCCCH--
Q 005912 41 ATCGIPEVAFATFENMEYGED-YMKPD------TETYNCVIQAYTRAESYD----RVQDVAELLGMMVEDHKRLQPNV-- 107 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~-gi~Pd------~~tyn~LI~ay~k~g~~~----~~~eAl~lf~eM~~~~~gi~Pd~-- 107 (670)
.+.|+.+.|..+|.+.+. .. ...|+ ...||+-...+.+..+++ -.++|+++++.-... ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~-~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~-~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD-LLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM-DKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhh-HHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc-cccCCcHHH
Confidence 467999999999999873 22 34454 456888888888883221 134455555331110 2334444
Q ss_pred ---HHHHHHHHHHHHcCCHHH---HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 108 ---KTYALLVECFTKYCAVTE---AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 108 ---~Ty~~LL~a~ak~g~~d~---A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.++..++.+|...+..+. |..+++.+.+. ++..|.+|-.-|..+.+.++.+++.+++..|...-
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---------~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE---------YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 456777888887776654 55566666442 33344467777888888999999999999998763
No 269
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.29 E-value=2.1e+02 Score=28.71 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=57.5
Q ss_pred HHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC-CCCHHHHHHHHHHHHHcCCHHH
Q 005912 47 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL-QPNVKTYALLVECFTKYCAVTE 125 (670)
Q Consensus 47 e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi-~Pd~~Ty~~LL~a~ak~g~~d~ 125 (670)
+.|+..|-.+. ..+.--++..--.|-.-|.+. +..+++.++....+....- .+|...|.+|.+.|-+.++.+.
T Consensus 123 ~~A~~~fL~~E--~~~~l~t~elq~aLAtyY~kr----D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLE--GTPELETAELQYALATYYTKR----DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHc--CCCCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 67899999998 666666666666666666655 4889999998877643333 7888999999999999999887
Q ss_pred HH
Q 005912 126 AI 127 (670)
Q Consensus 126 A~ 127 (670)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 270
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.69 E-value=4.5e+02 Score=27.53 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=101.5
Q ss_pred hcCChHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHc
Q 005912 7 KAGDHSNALEIAYEMEA---AG-RMATTFH-FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRA 80 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~---~G-v~Pd~~t-yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~-tyn~LI~ay~k~ 80 (670)
...+.++.++++.+|.. .| ..++..+ |--++-+..-+|+.+.|...++++.. +..-.+-+. .+..++.+ .
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-~fp~S~RV~~lkam~lEa---~ 99 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD-RFPGSKRVGKLKAMLLEA---T 99 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-hCCCChhHHHHHHHHHHH---h
Confidence 35678889999988874 45 6677664 45566677789999999999999873 222223333 23333333 4
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| ..++|+++|+...++ . +-|.++|--=+-..--.|.--+|.+-+....+. +..+.. .|--|-..|
T Consensus 100 ~---~~~~A~e~y~~lL~d--d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~E--------AW~eLaeiY 164 (289)
T KOG3060|consen 100 G---NYKEAIEYYESLLED--D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQE--------AWHELAEIY 164 (289)
T ss_pred h---chhhHHHHHHHHhcc--C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHH--------HHHHHHHHH
Confidence 4 567899999999983 3 446677765454454555555666655554432 222322 899999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 005912 161 CREGRIIELLEALEAM 176 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M 176 (670)
...|++++|--.+++|
T Consensus 165 ~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEEL 180 (289)
T ss_pred HhHhHHHHHHHHHHHH
Confidence 9999999998888877
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=4.9e+02 Score=27.76 Aligned_cols=145 Identities=13% Similarity=0.028 Sum_probs=89.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHH
Q 005912 116 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR 195 (670)
Q Consensus 116 a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~ 195 (670)
.....|++..|..+|.......... ++.--.|..+|...|+.+.|..++..+...-- .+ .++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~---------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~---~~------~~~ 204 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPEN---------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ---DK------AAH 204 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCccc---------chHHHHHHHHHHHcCChHHHHHHHHhCcccch---hh------HHH
Confidence 4567899999999999887643221 12556799999999999999999998865532 11 245
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHH
Q 005912 196 TLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 275 (670)
Q Consensus 196 ~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~L 275 (670)
. +.+-++++.++...+-.++....+-..-+..+. -+ .+...|...|+.+.|++.
T Consensus 205 ~-l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~a------------------------a~-~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 205 G-LQAQIELLEQAAATPEIQDLQRRLAADPDDVEA------------------------AL-ALADQLHLVGRNEAALEH 258 (304)
T ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHH------------------------HH-HHHHHHHHcCCHHHHHHH
Confidence 5 555556655554444333322222222222221 11 255778889999999888
Q ss_pred HHHHHHCCCCccCCCCHHHHHHHHHHHHHccC
Q 005912 276 LRTLQNEGPAVLGDVSESDYVRVEERLKKLIK 307 (670)
Q Consensus 276 f~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~ 307 (670)
+-.+..+... .-+...-..+++.|.-++.
T Consensus 259 Ll~~l~~d~~---~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 259 LLALLRRDRG---FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHhccc---ccCcHHHHHHHHHHHhcCC
Confidence 8777655332 1244555566666665554
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=38.74 E-value=68 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
++..+-.+|...|++++|.++|+...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46667788888888888888888888753
No 273
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.08 E-value=24 Score=32.97 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005912 317 KAASKMVVSELKEELDAQGLPTDGTRNVLYQRV 349 (670)
Q Consensus 317 ~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~ 349 (670)
..|+..+|..+|++|...|-||+ .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd-dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD-DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc-cHHHHHHHh
Confidence 66888999999999999999766 477777654
No 274
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=37.22 E-value=2.3e+02 Score=28.49 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhC-CCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~-~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
..|+..|-.+...+..-++...-+|-..|. ..+.++|..++.+..+. ..+-.+|+..+.+|.+.|-+.| +.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~---~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK---NYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc---chhhh
Confidence 578999999998888777777677666666 77899999988887642 2333788999999999999999 55555
No 275
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.70 E-value=1.4e+02 Score=30.46 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 54 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~ 54 (670)
+.+.+.+++.+|+...+.-.+. -..|..+-..|++.||-.|++++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3444555555555554433322 12233444455555555555555544433
No 276
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.96 E-value=2.8e+02 Score=32.45 Aligned_cols=83 Identities=14% Similarity=-0.010 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+..-|..|=.+..+.| +...|.+.|..-+ -|..|+-.+...|+-+....+-....+.|
T Consensus 665 s~~Kw~~Lg~~al~~~---~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g-------- 722 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAG---ELPLASECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLAKKQG-------- 722 (794)
T ss_pred chHHHHHHHHHHhhcc---cchhHHHHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHHHhhc--------
Confidence 4556777777777777 5555655665433 25566667777777655444444444433
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..|.-.-+|...|+++++.+++.+-
T Consensus 723 ------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 ------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4566777888999999999888754
No 277
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=35.24 E-value=4.5e+02 Score=30.98 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF-ATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~-~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.+.-.|+++.|.+.+-. ..+...+.+++.+.++-|.--+-..... .++-.-. . .|-...+..||..|++.=.
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~---~--~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDP---G--DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecC---C--CCCCcCHHHHHHHHHHHHh
Confidence 45667888888888766 3345567788887777655332222211 1221111 1 1222779999999998543
Q ss_pred cccHHHHHHHHHHhHh
Q 005912 83 YDRVQDVAELLGMMVE 98 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~ 98 (670)
..+..+|++.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4478899999987765
No 278
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=35.19 E-value=38 Score=32.33 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDA 631 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (670)
|.+-|+++|..+...||+|++....... .. -+.....+|+....+=.. -...|.+++.+|...+...-
T Consensus 50 E~~HA~~l~~~i~~rgg~~~~~~i~~~~----~~-~~~~~~e~l~~al~~E~~-vt~~~~~l~~~A~~~~D~~t 117 (161)
T cd01056 50 EREHAEKLIKYQNKRGGRVVLQDIKKPE----KD-EWGSGLEALELALDLEKL-VNQSLLDLHKLASEHNDPHL 117 (161)
T ss_pred HHHHHHHHHHHHHHcCCeeecCCCCCCC----Cc-ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhHcCCHhH
Confidence 4455999999999999999998644332 00 222344555544443322 45678889999988765543
No 279
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=35.11 E-value=2.2e+02 Score=25.25 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.-++.+-++.+.. ..+.|+.....+.|.||-+.+++..|.++|+-++.
T Consensus 23 ~we~rr~mN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFG--YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455566666666 78899999999999999999999999999998774
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.75 E-value=3.8e+02 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
+.++.+.+..+++.|.. -..-.|...++-.+| +.+.| ++.+|+++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~l--~i~r~---~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV-LRPEFPELDLFDGWL--HIVRG---DWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH-hCCCchHHHHHHHHH--HHHhC---CHHHHHHHHHHHhc
Confidence 44677777777777663 111123333344333 34566 56777777777655
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=34.71 E-value=4.9e+02 Score=26.15 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=98.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc-CC
Q 005912 24 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-KR 102 (670)
Q Consensus 24 ~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~-~g 102 (670)
..+.|++-.--.|-++....|+..+|...|.+-. ..-+.-|....-.+-++...-+ +...|...++...+-+ .+
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~---~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQ---EFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhcCCcc
Confidence 3467888888889999999999999999999988 4455667777777777777777 7889999999876621 12
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHH----HHHHHhh
Q 005912 103 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE----ALEAMAK 178 (670)
Q Consensus 103 i~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~----vf~~M~~ 178 (670)
-.||. --.+-..|.-.|....|+.-|+.....-.++.-.. -|. ..+++.|+.+++.. +++...+
T Consensus 158 r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~-------~Y~---e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 158 RSPDG--HLLFARTLAAQGKYADAESAFEVAISYYPGPQARI-------YYA---EMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH-------HHH---HHHHHhcchhHHHHHHHHHHHHHHh
Confidence 34553 33455778889999999999999988644433221 333 34567777766554 5555443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=34.61 E-value=4.4e+02 Score=25.59 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..+.-+..-|++.|+.+.|.+.|.++......+.-. -+.+-.+|+...-.|++..+...+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~------id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK------IDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466777888888888888888888887754332211 115667788888888888877776654
No 283
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.50 E-value=86 Score=35.36 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=54.5
Q ss_pred CCccCh---hcHHHHHHHHHcC-CC-----------cHH-HHHHHHHhhhcC---CccCcccHH-HHHHHHhhhchhHHH
Q 005912 573 GGTPTI---GDCAVIIRAAIRA-PL-----------PSA-FLKILQKTHSLG---YVFGSPLYD-EIISLCLDLGELDAA 632 (670)
Q Consensus 573 ~~~~~~---~~~~~~~~~~~~~-~~-----------~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 632 (670)
|||||+ -.-..|++++.+. ++ |.. =-..|+.+.+.| ..+|....+ +.+..+-+....+.+
T Consensus 110 GGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~ 189 (453)
T PRK09249 110 GGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFT 189 (453)
T ss_pred CcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHH
Confidence 899997 4445555555432 11 110 124555555555 456666664 566677777778899
Q ss_pred HHHHHHHHHhCCC---------CCchhHHHHhhh
Q 005912 633 VAIVADMETTGIA---------VPDQTLDRVITS 657 (670)
Q Consensus 633 ~~~~~~~~~~~~~---------~~~~~~~~~~~~ 657 (670)
++.+..+.+.|+. .|.||...+..-
T Consensus 190 ~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~ 223 (453)
T PRK09249 190 FALVEAARELGFTSINIDLIYGLPKQTPESFART 223 (453)
T ss_pred HHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHH
Confidence 9999999999982 488888877543
No 284
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=34.49 E-value=24 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.6
Q ss_pred hhhhhhccCCCCCchhHHHHH
Q 005912 540 TWEREITNRPPQKWSQEWEVE 560 (670)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~ 560 (670)
.||..|-=+-|+.||.-==+|
T Consensus 214 nWediLylT~Pe~Ws~~amyq 234 (449)
T KOG3871|consen 214 NWEDILYLTEPEEWSPAAMYQ 234 (449)
T ss_pred cHhHheeecCccccCHHHHHH
Confidence 699999999999999765543
No 285
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.76 E-value=6e+02 Score=26.60 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VK 108 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~ 108 (670)
.|+.-+..|- .|++..|..-|....+ ......|| .+=+|-.++...| +..+|-.+|..+.++ .+-.|- ..
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg---~y~~Aa~~f~~~~k~-~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQG---DYEDAAYIFARVVKD-YPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcc---cchHHHHHHHHHHHh-CCCCCCChH
Confidence 5888887764 6679999999988774 12233344 4667899999999 677888899998774 222232 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
++--|-.+..+.|+-+.|..+|+++.+.-
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 55666677889999999999999998753
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=32.57 E-value=4.4e+02 Score=24.97 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-....|....+.|.-+.-.++...+.+.+- ..|...-.+-.+|.+.|+..++.+++.+--++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~---------~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEE---------INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH--------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccC---------CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 345566777788888888888887764221 1122445677889999999999999998888886
No 287
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=32.40 E-value=4.4e+02 Score=24.92 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVEC 116 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a 116 (670)
+++..|+++.|.+.|.+-.. -...+...||.=-.+|--.| +.++|++=+++-.+. .|-+-- ...|.---..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~---~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQG---DDEEALDDLNKALEL-AGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcC---ChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHH
Confidence 46788999999999988652 12356788999999999999 788999888887764 333211 1223333344
Q ss_pred HHHcCCHHHHHHHHHHHHHccCC
Q 005912 117 FTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
|-..|+-+.|+.=|+..-+.|.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 56789999999999888776653
No 288
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=32.13 E-value=9.8e+02 Score=28.88 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=70.0
Q ss_pred hccCCCCCchhHHH-HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHH
Q 005912 545 ITNRPPQKWSQEWE-VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLC 623 (670)
Q Consensus 545 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (670)
...+.+-.||-+=. -..+++.+++.++.+.|-+.+.|..-+--|.+.-+- +++...+...+++=+-..+-|-=+.-+.
T Consensus 445 ~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~-sAl~~~~eaL~l~~~~~~~~whLLALvl 523 (799)
T KOG4162|consen 445 FQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT-SALDYAREALALNRGDSAKAWHLLALVL 523 (799)
T ss_pred hHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34555566664433 346999999999999996655555555555554444 4777888888885555556666666666
Q ss_pred hhhchhHHHHHHHH-HHHHhCC
Q 005912 624 LDLGELDAAVAIVA-DMETTGI 644 (670)
Q Consensus 624 ~~~~~~~~~~~~~~-~~~~~~~ 644 (670)
...+++.+|+.||. .|++.|+
T Consensus 524 Sa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 524 SAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred hhhhhhHHHHHHHHHHHHHhhh
Confidence 77899999999996 4888888
No 289
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.04 E-value=5.4e+02 Score=25.86 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch--------HHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--------PLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd--------tyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.+++..|-+.-++.++++++..|.+..+..+.. .|..+. .-|.-...+.++|.++.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L--KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL--KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 467888899999999999999998876644433 344433 778889999999999999999984
No 290
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.91 E-value=54 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=19.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHH
Q 005912 618 EIISLCLDLGELDAAVAIVADMET 641 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
.+|.+++++|++++|.+.+.++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 478999999999999998887754
No 291
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.75 E-value=2.5e+02 Score=25.69 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
|..-|--+=-.|++.-. .+..+|..|..++++..+.. -|...-..+.+.|++++|.+||..
T Consensus 64 nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~-------fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLAL-------FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHH-------HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHH-------HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44455555555555444 99999999999988766553 588888888999999999999974
No 292
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.66 E-value=6.7e+02 Score=26.86 Aligned_cols=151 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh------------------------CCCCCCCC
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY------------------------GEDYMKPD 66 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~------------------------~~~gi~Pd 66 (670)
..+|+++|.-+.++.- -.++=+-+|.++-..-+..+|...|..... .-.++.-|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 4589999998886522 224457788888888888777776654431 03456778
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-------------HHH----HHHHHHHHHcCCHHHHHHH
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-------------KTY----ALLVECFTKYCAVTEAIRH 129 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-------------~Ty----~~LL~a~ak~g~~d~A~~l 129 (670)
+.-|-+.+...-.-++ ..+++-++....+. +.-|+. .+| +..-..|..+|.+.+|.++
T Consensus 227 v~e~es~~rqi~~inl--tide~kelv~~ykg---dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 227 VQEYESLARQIEAINL--TIDELKELVGQYKG---DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred HHHHHHHhhhhhcccc--CHHHHHHHHHHhcC---CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8888888887765552 57777777776643 333321 234 4445778899999999999
Q ss_pred HHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 130 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 130 f~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
++.......-. ...|-.|+..|+..|+--+|.+-++.|.
T Consensus 302 ~qr~ltldpL~---------e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 302 HQRALTLDPLS---------EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHhhcChhh---------hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 98877643211 1167889999999999766666666553
No 293
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=31.12 E-value=7.4e+02 Score=27.18 Aligned_cols=207 Identities=12% Similarity=0.102 Sum_probs=118.1
Q ss_pred HHHcCChHHHHHHHHHchhC--CCCCCCCH--------HHHH--HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 40 QATCGIPEVAFATFENMEYG--EDYMKPDT--------ETYN--CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~--~~gi~Pd~--------~tyn--~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
+.+.|.++.|..=|+...+. +.+...+. ..|+ ..+..+.-+| +...|+.....+.+ +.| |
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G---D~~~ai~~i~~llE----i~~Wd 188 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG---DCQNAIEMITHLLE----IQPWD 188 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHh----cCcch
Confidence 56789999999999988741 11111122 2232 2344455567 67788888888876 555 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
...|-.--.||...|.+..|..=++...+....++- +.--+-..|-..|+.+.++..+++..+-+ |+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe---------~~ykis~L~Y~vgd~~~sL~~iRECLKld----pd 255 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE---------GHYKISQLLYTVGDAENSLKEIRECLKLD----PD 255 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH---------HHHHHHHHHHhhhhHHHHHHHHHHHHccC----cc
Confidence 777888889999999999998777766553221111 33445566778899999999999987654 55
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhc
Q 005912 187 AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 187 ~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~ 266 (670)
.-. +|++..-+....+.+..|.+. ...+..-++..--+...+. .|....+.||.. +.+-.+|...
T Consensus 256 HK~-Cf~~YKklkKv~K~les~e~~-----------ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~-r~~c~C~~~d 320 (504)
T KOG0624|consen 256 HKL-CFPFYKKLKKVVKSLESAEQA-----------IEEKHWTECLEAGEKVLKN--EPEETMIRYNGF-RVLCTCYRED 320 (504)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHhc--CCcccceeeeee-heeeeccccc
Confidence 432 223333344444433333221 1111222222222222111 233223444433 1222566677
Q ss_pred CCHHHHHHHHHHHHH
Q 005912 267 DGKKYHRKLLRTLQN 281 (670)
Q Consensus 267 G~~e~A~~Lf~~M~~ 281 (670)
|++-+|++.-.+...
T Consensus 321 ~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD 335 (504)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888777666543
No 294
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=30.71 E-value=46 Score=29.98 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=20.0
Q ss_pred HHHHhhhccCCcchhhHHHHHHh
Q 005912 515 AFKEMRKRKVFDVSDMYTIADAW 537 (670)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~ 537 (670)
..++|.++|+++..|.+.++..|
T Consensus 17 i~~~L~~~~~l~~~D~~~l~~yc 39 (116)
T TIGR01558 17 VAPELKGSGILTNLDRDALLRYC 39 (116)
T ss_pred HHHHHHHcCCchHHHHHHHHHHH
Confidence 45678889999999999999999
No 295
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=30.04 E-value=1e+03 Score=29.88 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=80.2
Q ss_pred hHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCH
Q 005912 46 PEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAV 123 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~ 123 (670)
...|+..|-+-. .+.|+ ...|..|=.-|+... +...|.+.|..-.+ +-| |......+..-|+....+
T Consensus 474 ~~~al~ali~al----rld~~~apaf~~LG~iYrd~~---Dm~RA~kCf~KAFe----LDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRAL----RLDVSLAPAFAFLGQIYRDSD---DMKRAKKCFDKAFE----LDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHHHHHH----hcccchhHHHHHHHHHHHHHH---HHHHHHHHHHHHhc----CCchhhhhHHHHHHHhhccccH
Confidence 666766665544 12333 366888877777666 68889999988765 334 445667788888888888
Q ss_pred HHHHHHHHHHHHccCCC---------cc---------------cccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 124 TEAIRHFRALQNYEGGT---------KV---------------LHNEGNFGD---PLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 124 d~A~~lf~~M~~~g~~~---------~v---------------~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
+.|..+.-..-+....- .+ .......|. .|..|-.+|.++|++..|.++|...
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 88888732222211100 00 011122233 8888999999999999999999876
Q ss_pred hhC
Q 005912 177 AKD 179 (670)
Q Consensus 177 ~~~ 179 (670)
..-
T Consensus 623 s~L 625 (1238)
T KOG1127|consen 623 SLL 625 (1238)
T ss_pred Hhc
Confidence 543
No 296
>PRK05660 HemN family oxidoreductase; Provisional
Probab=29.94 E-value=1.1e+02 Score=33.47 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred CCccChh---cHHHHHHHHHcC------------CCcHH-HHHHHHHhhhcCC---ccCcccHH-HHHHHHhhhchhHHH
Q 005912 573 GGTPTIG---DCAVIIRAAIRA------------PLPSA-FLKILQKTHSLGY---VFGSPLYD-EIISLCLDLGELDAA 632 (670)
Q Consensus 573 ~~~~~~~---~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 632 (670)
||||++- +...|+...-+. -.|.. -...|+.++..|. ++|....+ +.+...-+..-.+.+
T Consensus 66 GGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~ 145 (378)
T PRK05660 66 GGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEA 145 (378)
T ss_pred CCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHH
Confidence 8999984 455555554431 11221 1245667777774 67777776 566677777788999
Q ss_pred HHHHHHHHHhCCCC---------CchhHHHHhhh
Q 005912 633 VAIVADMETTGIAV---------PDQTLDRVITS 657 (670)
Q Consensus 633 ~~~~~~~~~~~~~~---------~~~~~~~~~~~ 657 (670)
++.+..+.+.|+.+ |.||.+.+...
T Consensus 146 ~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~ 179 (378)
T PRK05660 146 KRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDD 179 (378)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHH
Confidence 99999999999853 88888877543
No 297
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=29.73 E-value=1.7e+02 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhcCCccCcccHHHHHHHH
Q 005912 591 APLPSAFLKILQKTHSLGYVFGSPLYDEIISLC 623 (670)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (670)
.+.+..+-.|+.++|++- ..|.+.+.-|
T Consensus 486 ~~~~~~ld~L~~~L~~La-----q~~p~~~a~~ 513 (840)
T PF04147_consen 486 PPPFEVLDSLIPHLYDLA-----QKYPEEAAEC 513 (840)
T ss_pred CcCHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 345555666666776663 3344444444
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.60 E-value=15 Score=43.76 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 005912 152 PLSLYLRALC 161 (670)
Q Consensus 152 tyn~LI~ay~ 161 (670)
+.+++|.-|.
T Consensus 1014 sLdSIVt~Yl 1023 (1516)
T KOG1832|consen 1014 SLDSIVTQYL 1023 (1516)
T ss_pred cHHHHHHHHH
Confidence 3444444443
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=29.35 E-value=3e+02 Score=31.50 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
-|-.++-+.|+.++|.+.|++|.+.....+.. + ..-.||.+|...+.+.++..++.+-.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l---~----IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNL---N----IRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchh---h----HHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 35556668999999999999998743221111 1 6678999999999999999999987443
No 300
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.98 E-value=24 Score=34.16 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHhcCCHHHHHH
Q 005912 263 RCLEDGKKYHRK 274 (670)
Q Consensus 263 ~~~~G~~e~A~~ 274 (670)
.|....+..|..
T Consensus 72 kC~~r~Vk~aYH 83 (227)
T KOG3241|consen 72 KCTKRNVKQAYH 83 (227)
T ss_pred HHHHHHHHHHHH
Confidence 355555555543
No 301
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.84 E-value=2.2e+02 Score=27.75 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=40.3
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
...+-+......+..++... ..|+..+|..++.++...|+.++|.+++.++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~----~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR----RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44432234444455555543 5799999999999999999999999999998763
No 302
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.85 E-value=57 Score=37.93 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=58.1
Q ss_pred HHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhh--ccCCcc----hhhHHH
Q 005912 460 KEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRK--RKVFDV----SDMYTI 533 (670)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~ 533 (670)
+.+-..-+++.+-++.++|-|-.+-+.+.+ ++++.++.+-. +|+ -. ..|-+|
T Consensus 184 ~~~i~n~K~kIA~l~s~llenPE~N~~~L~---------------------~l~eml~s~n~~~~Kl-~~lSLlaVFKDI 241 (704)
T KOG2153|consen 184 EEKIENKKEKIASLCSKLLENPEENLKKLK---------------------ELFEMLDSQNPKAKKL-ALLSLLAVFKDI 241 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHH---------------------HHHHHHhhhchHHHHH-HHHHHHHHHHhh
Confidence 334445567778888888877766666555 33444444433 221 11 124444
Q ss_pred HHHhcchhhhhhccC--CCCCchhHHHHHHHH-----HHHHHHHHcC-----CccChhcHH-HHHHHHH
Q 005912 534 ADAWGWTWEREITNR--PPQKWSQEWEVELAI-----QIMLKVIELG-----GTPTIGDCA-VIIRAAI 589 (670)
Q Consensus 534 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~-~~~~~~~ 589 (670)
-.-+.-++..+.-.+ .-..-.+.|++|.|+ +.|+++++.= .+|+.+.++ ..++.|+
T Consensus 242 iP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~ 310 (704)
T KOG2153|consen 242 IPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCAC 310 (704)
T ss_pred cccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Confidence 444444444444433 334567789998886 5677766432 345555444 4444444
No 303
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=27.50 E-value=29 Score=40.82 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.8
Q ss_pred hhccCc
Q 005912 400 FLGEGL 405 (670)
Q Consensus 400 llg~~~ 405 (670)
||+.+.
T Consensus 870 fL~~~~ 875 (960)
T KOG1189|consen 870 FLNVES 875 (960)
T ss_pred eecCCC
Confidence 554443
No 304
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.39 E-value=4.6e+02 Score=23.56 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.+++|..+-+.+...|-. ....--+=++.+...|+++.|..+.+.+. .||...|-+|-.+ +.| ....+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~------~pdlepw~ALce~--rlG---l~s~l 87 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC------YPDLEPWLALCEW--RLG---LGSAL 87 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC------CchHHHHHHHHHH--hhc---cHHHH
Confidence 357788888877766533 22222233455778899999999988777 8999999887553 556 44555
Q ss_pred HHHHHHhHhccCCCCCCHHHHHH
Q 005912 90 AELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
..-+..|-. +| .|-..+|..
T Consensus 88 ~~rl~rla~--sg-~p~lq~Faa 107 (115)
T TIGR02508 88 ESRLNRLAA--SG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHHHh--CC-CHHHHHHHH
Confidence 555666665 33 465555543
No 305
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=27.27 E-value=1.6e+02 Score=32.91 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCChHHHHHHhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHH
Q 005912 509 PEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAA 588 (670)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (670)
.++|-+|+.+|.++..=.+.-||-. +..+.+-+..|..+-|-.|++.+.+.+ ...|+-+|.-.
T Consensus 285 Ge~p~~Av~~iI~qsa~eI~k~fl~-------------~~~~~~~~~~Wt~~QaW~LIk~Ls~~~----~v~Y~~ll~~~ 347 (431)
T PF10443_consen 285 GESPEEAVEEIISQSASEIRKMFLL-------------DDSDDAKSLKWTREQAWYLIKLLSKND----EVPYNELLLSP 347 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc-------------CCCCcccCCCCCHHHHHHHHHHhccCC----cCcHHHHHccc
Confidence 4889999999999987444444433 445556677777778888888874433 34577777765
Q ss_pred HcCCCcHHHHHHHHH------hhhcCC----ccCcccHHHHHHHHhhhchhHH
Q 005912 589 IRAPLPSAFLKILQK------THSLGY----VFGSPLYDEIISLCLDLGELDA 631 (670)
Q Consensus 589 ~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 631 (670)
.=...+++.++-|.+ ++..|- +||.|+|.+|..-.++--.+.+
T Consensus 348 lFk~~~E~~L~aLe~aeLItv~~~~G~p~~I~pGkPvy~aAF~~L~~D~~l~~ 400 (431)
T PF10443_consen 348 LFKGNDETALRALEQAELITVTTDNGRPSTIRPGKPVYRAAFKRLVNDKVLSA 400 (431)
T ss_pred ccCCCChHHHHHHHHCCcEEEEecCCcCCeeECCChhHHHHHHHHhhCHHHHH
Confidence 433366766665554 244554 8999999999887766544443
No 306
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.21 E-value=1.3e+02 Score=27.97 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=38.0
Q ss_pred HHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCch
Q 005912 597 FLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (670)
..-.++...+.|-.-.-+..--.+-=|.|.|+++.|+++-.-.-++|+..|+.
T Consensus 32 Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~ 84 (132)
T PF05944_consen 32 YLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDR 84 (132)
T ss_pred HHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCcccc
Confidence 44455555554443334555556666789999999999999999999999864
No 307
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.71 E-value=7.5e+02 Score=27.46 Aligned_cols=123 Identities=9% Similarity=-0.066 Sum_probs=76.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-----CCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA-----GRM---------ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~-----Gv~---------Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
+.|.+.|++..|...|+..... +.. .-..+++.|.-+|.+.+.+..|...-+.... .. .+|+-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~-~~N~K 292 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LD-PNNVK 292 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cC-CCchh
Confidence 3577889999998888774321 111 1234567777788889999988887766552 11 23332
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK-YCA-VTEAIRHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak-~g~-~d~A~~lf~~M~~ 135 (670)
.---==.+|...| +.+.|...|..+++ +.|+...-+.=|..|.+ ... .+...++|..|..
T Consensus 293 ALyRrG~A~l~~~---e~~~A~~df~ka~k----~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALG---EYDLARDDFQKALK----LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhc---cHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222223455556 68899999999977 78988877776666653 222 2334666666654
No 308
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.41 E-value=1.5e+02 Score=26.46 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHch
Q 005912 33 FNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
|+.|+..|-..|..++|.+++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 8999999999999999999999987
No 309
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.32 E-value=3.9e+02 Score=30.60 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=54.8
Q ss_pred ccC-CcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHH
Q 005912 522 RKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKI 600 (670)
Q Consensus 522 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (670)
.|+ |+-.....||.+-+ .-.-.|+.+++.++..++. ..++..+. .+
T Consensus 196 Egi~~e~eAL~~Ia~~S~------------------Gd~RdAL~lLeq~i~~~~~--~it~~~V~-------------~~ 242 (484)
T PRK14956 196 ENVQYDQEGLFWIAKKGD------------------GSVRDMLSFMEQAIVFTDS--KLTGVKIR-------------KM 242 (484)
T ss_pred cCCCCCHHHHHHHHHHcC------------------ChHHHHHHHHHHHHHhCCC--CcCHHHHH-------------HH
Confidence 466 77777888998873 3334499999887765422 12343331 11
Q ss_pred HHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCC
Q 005912 601 LQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVP 647 (670)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (670)
+||. +..++.+++.++...+...+|+.+|+.|-..|..|.
T Consensus 243 ------lg~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 243 ------IGYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred ------hCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 1554 445556666666666666778888888888887654
No 310
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.26 E-value=64 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHH
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 201 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~ 201 (670)
.-+.|.-..|..||..|..+|- +|+. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~--pPdd------W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGN--PPDD------WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCC--CCcc------HHHHHHHh
Confidence 3445667789999999999997 5765 88888765
No 311
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=26.05 E-value=49 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.6
Q ss_pred CcHHHHHHHHHhhhcCCccC
Q 005912 593 LPSAFLKILQKTHSLGYVFG 612 (670)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~ 612 (670)
-|+.--+|++...++||.||
T Consensus 27 s~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 27 SEETRERILEAAEELGYRPN 46 (46)
T ss_dssp THHHHHHHHHHHHHHTB-SS
T ss_pred CHHHHHHHHHHHHHHCCCCC
Confidence 45667789999999999986
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=25.87 E-value=1e+02 Score=19.70 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
+...+-..|...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567888999999999999886
No 313
>PRK15331 chaperone protein SicA; Provisional
Probab=25.67 E-value=4.6e+02 Score=25.48 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 118 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a 118 (670)
+-..|++++|..+|.-+.- . .| |..=|..|=.+|-..+ +.+.|+.+|...-. -.. -|...+-.+-.+|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~--d~~n~~Y~~GLaa~~Q~~k---~y~~Ai~~Y~~A~~--l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--Y--DFYNPDYTMGLAAVCQLKK---QFQKACDLYAVAFT--LLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--h--CcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--ccc-CCCCccchHHHHHH
Confidence 4467999999999999772 1 22 2333455555555566 78899999876543 111 22333445667888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 005912 119 KYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~ 136 (670)
..|+...|+..|.....+
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999887763
No 314
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.64 E-value=32 Score=37.46 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.4
Q ss_pred cChhcHHHHHH
Q 005912 576 PTIGDCAVIIR 586 (670)
Q Consensus 576 ~~~~~~~~~~~ 586 (670)
|++.-|-.|.|
T Consensus 468 ~~~t~~~~i~h 478 (514)
T KOG3130|consen 468 PSLTPPPAIAH 478 (514)
T ss_pred CCCCCchhhcC
Confidence 33333444433
No 315
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.56 E-value=92 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred cCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhC
Q 005912 607 LGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTG 643 (670)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
.||.|. +|+....-.--++|+.|+..|++.|
T Consensus 31 ~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 31 SGYNPT------VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred CCCCch------HHHHHHHhCcHHHHHHHHHHHHHhC
No 316
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=9.6e+02 Score=26.65 Aligned_cols=127 Identities=12% Similarity=0.007 Sum_probs=84.0
Q ss_pred HHHHHcCChHHHHHHHHHchh---CCCCCC---------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 38 SCQATCGIPEVAFATFENMEY---GEDYMK---------PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~---~~~gi~---------Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
+.|.+.|++..|..-|++... ...+.. .-+.+++.|-.+|.+.+ ....|++.-..... . =.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~---~~~~Ai~~c~kvLe--~-~~~ 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK---EYKEAIESCNKVLE--L-DPN 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh---hHHHHHHHHHHHHh--c-CCC
Confidence 357888999999888877432 011222 22567888888899988 67788877777665 1 134
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH-HHHHHHHHhhC
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE-LLEALEAMAKD 179 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee-A~~vf~~M~~~ 179 (670)
|....---=.||...|.++.|+..|..+.+..+.+.- .-+-|+..--+.....+ ..++|..|...
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka---------~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA---------ARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5565555567888999999999999999986443321 33445555445444443 46788888554
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=25.37 E-value=7.3e+02 Score=28.50 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
-|-.+.-+.| +.++|++.|.+|.+. ....-+......||.++...+...++..++..-..
T Consensus 264 RLAmCarklG---r~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLG---RLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhC---ChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3555566778 899999999999762 11112345778899999999999999999987643
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.89 E-value=1.1e+03 Score=28.41 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-c---ccccCCCCch-HHHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT-K---VLHNEGNFGD-PLSLYLRAL 160 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~-~---v~~~~g~~pd-tyn~LI~ay 160 (670)
..+....+...... .|+..+......|+... .|++..+..+++.+...+... + +..+.|.... ....|++++
T Consensus 180 ~eeI~~~L~~Il~k-Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 180 AQQVADHLAHVLDS-EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred HHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34444555544442 67877877777777665 599999999998877643211 0 1111122222 455566666
Q ss_pred HHcCCHHHHHHHHHHHhhCCC
Q 005912 161 CREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi 181 (670)
.+ |+...++.++++|...|+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAV 276 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCC
Confidence 55 889999999999999987
No 319
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.84 E-value=6e+02 Score=24.08 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=70.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC----------------CCCHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM----------------KPDTET 69 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi----------------~Pd~~t 69 (670)
.-.|.+++..++..+.... .|..-||-+|.-....-+-+-..++++.+-. -..+ ..+..-
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk-iFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK-IFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG-GS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh-hcCchhhcchHHHHHHHHHhcchHHH
Confidence 3457778888888877654 3566676666655555555555555555542 1111 123333
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
.+.-+..+++.| +-+.--+++.+... +-.|+....--+-+||.+.|+..++.+++.+..++|+.
T Consensus 89 vD~ALd~lv~~~---kkDqLdki~~~l~k---n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQG---KKDQLDKIYNELKK---NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 455555566666 34444455666542 23577777888999999999999999999998887753
No 320
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=24.76 E-value=4e+02 Score=22.04 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcC----------CccCcccHHHHHHHHhhhch
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLG----------YVFGSPLYDEIISLCLDLGE 628 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 628 (670)
++.|++++.-+.+.++..|+.+-+..+ .-|. +..-++|+++...| |.+|..++.-+....-...-
T Consensus 4 ~~r~~~Il~~l~~~~~~~t~~~ia~~l----~i~~-~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~~~~l 78 (91)
T smart00346 4 LERGLAVLRALAEEPGGLTLAELAERL----GLSK-STAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSSLDL 78 (91)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh----CCCH-HHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHhcCCH
Confidence 467899999887764444554433333 2232 33556776665443 66777777777777666666
Q ss_pred hHHHHHHHHHHH
Q 005912 629 LDAAVAIVADME 640 (670)
Q Consensus 629 ~~~~~~~~~~~~ 640 (670)
.+.|..++.++.
T Consensus 79 ~~~~~~~l~~l~ 90 (91)
T smart00346 79 REVAKPVLEELS 90 (91)
T ss_pred HHHHHHHHHHHh
Confidence 777777766653
No 321
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.40 E-value=3.2e+02 Score=32.30 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHH
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~e 167 (670)
+|+.||..+|++-.+.++++......-...+... .||..|+.+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~------~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLP------MINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehh------HHHHHHHHHHhcCCcc
Confidence 8999999999999999999988865443332211 7999999999999864
No 322
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.35 E-value=2.8e+02 Score=22.63 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=34.2
Q ss_pred CChHHHHHHhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcC
Q 005912 510 EDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELG 573 (670)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (670)
.++...++.|.++|+++..+...|-..- . ..+.|.+|+..+.+=|
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~~------------------~-~~~k~~~Lld~l~~kg 57 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSES------------------T-RQDKARKLLDILPRKG 57 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcCC------------------C-hHHHHHHHHHHHHhcC
Confidence 4778899999999999988887765532 1 4566888888887655
No 323
>PRK10304 ferritin; Provisional
Probab=24.27 E-value=78 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 630 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (670)
|.+=|.++++.+...||.|++.....-. . -++....+|+...++=. -....|.+++.+|.+.+.+.
T Consensus 50 E~~HA~kl~~~i~~rgg~~~~~~i~~p~-----~-~~~s~~e~~~~~l~~E~-~vt~~i~~l~~~A~~~~D~~ 115 (165)
T PRK10304 50 EMTHMQRLFDYLTDTGNLPRINTVESPF-----A-EYSSLDELFQETYKHEQ-LITQKINELAHAAMTNQDYP 115 (165)
T ss_pred HHHHHHHHHHHHHHcCCCeeeCCCCCCc-----c-ccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHh
Confidence 6677999999999999999987643111 1 22235556665544432 24567899999999887764
No 324
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=24.03 E-value=1.3e+02 Score=28.05 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhh
Q 005912 556 EWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTH 605 (670)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (670)
-||+..++ ..+...-..|+--.-.+.||||-|.---.-+++||.-++
T Consensus 65 ~wEvrkgl---N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 65 GWEVRKGL---NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHH---HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 68885544 334455566666666777777777666666777776543
No 325
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=23.92 E-value=6.4e+02 Score=26.78 Aligned_cols=119 Identities=4% Similarity=-0.013 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEA-AGRMATTFHFNHLLSCQAT-CG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~-~Gv~Pd~~tyn~LI~~yak-~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+..+-+|+.+|+...- ..+--|..+-..|++.... .+ ....-.++.+-+.. ..+-.++..+--++|..++..+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~-t~~~~l~~~vi~~Il~~L~~~~--- 216 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS-TFSKSLTRNVIISILEILAESR--- 216 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh-ccccCCChhHHHHHHHHHHhcc---
Confidence 4446677888774332 3355577777777777665 22 33344455555553 4556788889999999999999
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 131 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~ 131 (670)
+...-++++..-... .+..-|...|+.+|....+.|+..-...+..
T Consensus 217 dW~kl~~fW~~~~~~-~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 217 DWNKLFQFWEQCIPN-SVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cHHHHHHHHHHhccc-CCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 677888888776541 2456688999999999999999876555543
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.4e+03 Score=27.97 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=26.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
|.-|.....+..--.+++.+.+.|+...= .-+.||.+|.+.++.+.-.++.+.-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~d---------httlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSD---------HTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccch---------hHHHHHHHHHHhcchHHHHHHHhcC
Confidence 33343444444444444445444433211 3455666666666666655555543
No 327
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=23.56 E-value=2.1e+02 Score=23.49 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcc--cHHHHHHHHhhhchhHHHHHHHHHHH
Q 005912 563 IQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSP--LYDEIISLCLDLGELDAAVAIVADME 640 (670)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (670)
+++++.+++.|..++.+ ...|+-|++....+ +++.+.+.|..++.. .-..++..++..|.. .++..|-
T Consensus 10 ~~~~~~ll~~~~~~~~~--~~~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll 79 (89)
T PF12796_consen 10 LEILKFLLEKGADINLG--NTALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHYAAENGNL----EIVKLLL 79 (89)
T ss_dssp HHHHHHHHHTTSTTTSS--SBHHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH----HHHHHHH
T ss_pred HHHHHHHHHCcCCCCCC--CCHHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHHHHHcCCH----HHHHHHH
Confidence 35667777788776662 23566666666655 444444567666654 233455556666664 4667777
Q ss_pred HhCCCCC
Q 005912 641 TTGIAVP 647 (670)
Q Consensus 641 ~~~~~~~ 647 (670)
+.|..+.
T Consensus 80 ~~g~~~~ 86 (89)
T PF12796_consen 80 EHGADVN 86 (89)
T ss_dssp HTTT-TT
T ss_pred HcCCCCC
Confidence 7777664
No 328
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=23.43 E-value=2.1e+02 Score=18.86 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.+|..+-.+|...|++++|...|+...+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777778888888888888888877653
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.17 E-value=5.4e+02 Score=24.63 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=26.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTF---HFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~---tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
..++++++..+++.|.- ++|+.. +|-..| +.+.|++.+|..+|++..
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhh
Confidence 35666666666666654 234322 222222 345666777777777666
No 330
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.98 E-value=8.7e+02 Score=25.28 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
|=...|+--+.-+ +.| +..+|.+.|+.+..+|.+-.-...+--.++.++-+.++.+.|...+++..+..
T Consensus 33 p~~~LY~~g~~~L-~~g---n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly------- 101 (254)
T COG4105 33 PASELYNEGLTEL-QKG---NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY------- 101 (254)
T ss_pred CHHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-------
Confidence 4455666666555 455 58899999999987544433456677778888889999999999999887753
Q ss_pred cCCCCch-HHHHHHHHHHHcCC-------H---HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHH-HHHHcC
Q 005912 145 NEGNFGD-PLSLYLRALCREGR-------I---IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ-EEAELG 212 (670)
Q Consensus 145 ~~g~~pd-tyn~LI~ay~k~G~-------~---eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~-~m~~~G 212 (670)
...|+ -|-..|.+++.--. . .+|+.-|++..++- ||+- |......-+..+. .+...
T Consensus 102 --P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry----PnS~-----Ya~dA~~~i~~~~d~LA~~- 169 (254)
T COG4105 102 --PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY----PNSR-----YAPDAKARIVKLNDALAGH- 169 (254)
T ss_pred --CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC----CCCc-----chhhHHHHHHHHHHHHHHH-
Confidence 22333 67778888775332 2 23444444544442 3332 3332222221111 11111
Q ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 213 YEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 213 ~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
.. .|..++.+.|-..+|..-|+.|.+. . |+. ..+.-+|. .+..+|-.-|..++|.+.-.-+.
T Consensus 170 -Em-~IaryY~kr~~~~AA~nR~~~v~e~-y-~~t-~~~~eaL~-~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 170 -EM-AIARYYLKRGAYVAAINRFEEVLEN-Y-PDT-SAVREALA-RLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred -HH-HHHHHHHHhcChHHHHHHHHHHHhc-c-ccc-cchHHHHH-HHHHHHHHhCChHHHHHHHHHHH
Confidence 00 3445666666666676667777654 1 222 13333332 35577777777777766654443
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=1.1e+03 Score=27.88 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
.+.|+++.|.++..+.. +..-|..|=.+..+.|++..|.+.|.+-. -|..|+-.|...| +
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g---~ 707 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-----------DLGSLLLLYTSSG---N 707 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----------chhhhhhhhhhcC---C
Confidence 45566666666655443 56789999999999999999999998776 2788888999888 4
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+....+=..-++ .| ..|....+|-..|+++++.+++-.-.+
T Consensus 708 ~~~l~~la~~~~~--~g------~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 708 AEGLAVLASLAKK--QG------KNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred hhHHHHHHHHHHh--hc------ccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 5433333333333 22 245666788899999999999876544
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=22.64 E-value=8.3e+02 Score=25.98 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..=|++++..| +..+++...-+--+....+.| ...-..|--|+|.+.+..+.++-+.-.+....-.+ |
T Consensus 87 vvGIQALAEmn---rWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l-------p 154 (309)
T PF07163_consen 87 VVGIQALAEMN---RWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL-------P 154 (309)
T ss_pred hhhHHHHHHHh---hHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc-------h
Confidence 44589999999 788877655444331134444 44556667789999999998888776653221111 1
Q ss_pred hHHHHHHHHHHH-----cCCHHHHHHHH
Q 005912 151 DPLSLYLRALCR-----EGRIIELLEAL 173 (670)
Q Consensus 151 dtyn~LI~ay~k-----~G~~eeA~~vf 173 (670)
-|.++...|.. .|.+++|.++.
T Consensus 155 -~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 155 -EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 58888877765 69999999887
No 333
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=22.30 E-value=44 Score=34.45 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=53.6
Q ss_pred cCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCchhHHHHhhhhccCCCccccc
Q 005912 590 RAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDA 668 (670)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
-.+.++||-++|+.+-+-.+=|++ ..++|=|-+ |+.+ +...+++=+.--|..+.|++-|+|+++|.-....-++
T Consensus 169 ~l~~~~a~RR~fe~lAsG~l~p~~---~gI~DPce~-~~~n-v~~~lT~qqrd~It~sAQ~alRl~Afgq~~kvLGm~~ 242 (246)
T smart00572 169 PLGLGDAFRRVFECLASGILLPGS---PGLTDPCEK-DNTD-ALTALTLQQREDVTASAQTALRLLAFGQIHKILGMDP 242 (246)
T ss_pred CCCHHHHHHHHHHHHHhccCcCCC---CCCcCCCCC-Cccc-HHHhcCHHHHHHHHHHHHHHHHHHHhcchheeeccCC
Confidence 356678999999988777775655 356666764 3334 5556666667778999999999999999876655443
No 334
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=1.7e+03 Score=28.45 Aligned_cols=88 Identities=19% Similarity=0.455 Sum_probs=54.6
Q ss_pred HHHhcchhhhh-hccCCCCCchhHH-HHHHHHHHHHHHH-----Hc-CCccChhcHHHHHHHHHcCCCcHHHHHHHHHhh
Q 005912 534 ADAWGWTWERE-ITNRPPQKWSQEW-EVELAIQIMLKVI-----EL-GGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTH 605 (670)
Q Consensus 534 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (670)
++||-|+=+++ ....|-+.|-.+- .-+-|-.|+++.+ ++ |..| |+. .+|..
T Consensus 1294 seawmwlannd~ma~~p~r~~~~~ssaadeaW~lL~~lv~ry~a~~~~l~r-----------------~sv----~stll 1352 (1480)
T KOG4521|consen 1294 SEAWMWLANNDDMAATPQRGWVAASSAADEAWSLLRGLVDRYQAEWPGLSR-----------------PSV----GSTLL 1352 (1480)
T ss_pred chhhHHHhccchhhcCCcccchhhccchhhHHHHHHHHHHHHHhhcccccc-----------------hHH----HHHHH
Confidence 57899999888 8888888875331 1111233344332 22 3222 222 23333
Q ss_pred hcCCccCcccH----------HHHHHHHhhhchhHHHHHHHHHHHHh
Q 005912 606 SLGYVFGSPLY----------DEIISLCLDLGELDAAVAIVADMETT 642 (670)
Q Consensus 606 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
.+|++.+.|.| ++++.++++-|.+-+|..++.+-.++
T Consensus 1353 ~l~~~~~LP~WLinsfK~~daaellrllVdy~rl~eA~dLlsEive~ 1399 (1480)
T KOG4521|consen 1353 FLSFKLNLPVWLINSFKNNDAAELLRLLVDYERLSEALDLLSEIVEQ 1399 (1480)
T ss_pred hcccCccchHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34555555554 78999999999999999998876554
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.26 E-value=7.2e+02 Score=24.02 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=39.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHchh
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPEVAFATFENMEY 58 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI-~~yak~G~~e~A~~lf~~M~~ 58 (670)
.-.+.++++++..+++-|.. ++|.....-.+- -.+.+.|++.+|..+|+++..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34567889999999999986 456554443322 235688999999999999984
No 336
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.03 E-value=52 Score=34.01 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.6
Q ss_pred cccccc
Q 005912 310 EQHVLK 315 (670)
Q Consensus 310 ~~~~L~ 315 (670)
.++.|+
T Consensus 37 sHTkLK 42 (244)
T PF04889_consen 37 SHTKLK 42 (244)
T ss_pred cCCeee
Confidence 444444
No 337
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.83 E-value=1.4e+03 Score=27.42 Aligned_cols=274 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
+|..+-...++-++..+=+...----.|-...|..|...-...-.++.|..-|-+... -.|++.--..=++.-...-++
T Consensus 663 ~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~a 741 (1189)
T KOG2041|consen 663 MIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRA 741 (1189)
T ss_pred EehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhH
Q ss_pred ------CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHccCCCccccc
Q 005912 81 ------ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA---------LQNYEGGTKVLHN 145 (670)
Q Consensus 81 ------g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~---------M~~~g~~~~v~~~ 145 (670)
| +.++|.++|-+|-+ +.+ .|..+-+.|++-.+.++++. +..
T Consensus 742 ei~~~~g---~feeaek~yld~dr--rDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~---------- 797 (1189)
T KOG2041|consen 742 EISAFYG---EFEEAEKLYLDADR--RDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKED---------- 797 (1189)
T ss_pred hHhhhhc---chhHhhhhhhccch--hhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHH----------
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
.|+.+=+.++....+++|.+.+..-....- .-.... ...+...+-.+...+.+..-..-.+..++..-
T Consensus 798 ------A~r~ig~~fa~~~~We~A~~yY~~~~~~e~--~~ecly----~le~f~~LE~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 798 ------AFRNIGETFAEMMEWEEAAKYYSYCGDTEN--QIECLY----RLELFGELEVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccchHh--HHHHHH----HHHhhhhHHHHHHhcCcccchHHHHHHHHHhh
Q ss_pred CcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHc
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKL 305 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~ 305 (670)
|+.++|...|-+.+.- .+-+..+..-.++-+|.+|-+......+. .-.-..+-..+.+.
T Consensus 866 GMC~qAV~a~Lr~s~p---------------kaAv~tCv~LnQW~~avelaq~~~l~qv~------tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 866 GMCDQAVEAYLRRSLP---------------KAAVHTCVELNQWGEAVELAQRFQLPQVQ------TLIAKQAAQLLADA 924 (1189)
T ss_pred chHHHHHHHHHhccCc---------------HHHHHHHHHHHHHHHHHHHHHhccchhHH------HHHHHHHHHHHhhc
Q ss_pred cCCCcccccc-cccCCHHHHHHHHHHHHhC
Q 005912 306 IKGPEQHVLK-PKAASKMVVSELKEELDAQ 334 (670)
Q Consensus 306 ~~~p~~~~L~-~~~g~~~~A~~l~~~M~~~ 334 (670)
.. ..++-. .++|+.-+|.+++..|.+.
T Consensus 925 ~~--~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 925 NH--MEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ch--HHHHHHhhhcccchhHHHHHHHHhHH
No 338
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=1.1e+03 Score=25.81 Aligned_cols=156 Identities=9% Similarity=-0.043 Sum_probs=89.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH----HHHHcCCc
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ----AYTRAESY 83 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~----ay~k~g~~ 83 (670)
+|++.+|-..++++.+. ++.|...++-.=.+|.-.|+.......|+++. ..-.||...|.-+=. |+...|-
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi---p~wn~dlp~~sYv~GmyaFgL~E~g~- 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII---PKWNADLPCYSYVHGMYAFGLEECGI- 190 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc---cccCCCCcHHHHHHHHHHhhHHHhcc-
Confidence 45666666677777653 66677888888888888888888888888876 223456544443322 2335663
Q ss_pred ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
.++|.+.-++-.+ +.| |...-.++-..+--.|++.++.++...-...--...+.. +. -|=..--.|..
T Consensus 191 --y~dAEk~A~ralq----iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla----sH-NyWH~Al~~iE 259 (491)
T KOG2610|consen 191 --YDDAEKQADRALQ----INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA----SH-NYWHTALFHIE 259 (491)
T ss_pred --chhHHHHHHhhcc----CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH----hh-hhHHHHHhhhc
Confidence 3444444444332 222 444555566666678888888887655432110111100 00 11112223455
Q ss_pred cCCHHHHHHHHHH-HhhC
Q 005912 163 EGRIIELLEALEA-MAKD 179 (670)
Q Consensus 163 ~G~~eeA~~vf~~-M~~~ 179 (670)
.+.++.|+++|+. |.++
T Consensus 260 ~aeye~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 260 GAEYEKALEIYDREIWKR 277 (491)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 6899999999984 4433
No 339
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=20.61 E-value=6.3e+02 Score=22.73 Aligned_cols=159 Identities=16% Similarity=0.031 Sum_probs=88.5
Q ss_pred HHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~-Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g 81 (670)
.+...+.+..+...+...... ........+..+...+...+....+...+.... .....+ ...+...-. .+...|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 144 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL--ALDPDP-DLAEALLALGALYELG 144 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCCCc-chHHHHHHHHHHHHcC
Confidence 344556666666666555432 233344555555666666666777777777666 222222 122222222 566666
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP----NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P----d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
+.+.|...|.+... ..| ....+......+...++.+.+...+.......... ....+..+-
T Consensus 145 ---~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (291)
T COG0457 145 ---DYEEALELYEKALE----LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLG 209 (291)
T ss_pred ---CHHHHHHHHHHHHh----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhh
Confidence 66677777776643 222 23334444444566777777777777766542221 111566667
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCC
Q 005912 158 RALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
..|...+..+.|...+.......
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777777777777665543
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.37 E-value=1.6e+02 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 156 YLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6688999999999999999998765
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=20.23 E-value=1.9e+03 Score=28.09 Aligned_cols=69 Identities=23% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHcCCcHHHHHHH
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELG--YEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G--~~pd~i~~~~~~~g~~~~a~~l 234 (670)
+-....++.+-+-+++++.+.-. .-.. +..+..+..+.+.+....+.| ..| .+..+..+.|+..+|..+
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~--~~rk----F~ID~~L~ry~~AL~hLs~~~~~~~~-e~~n~I~kh~Ly~~aL~l 930 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMET--LLRK----FKIDDYLKRYEDALSHLSECGETYFP-ECKNYIKKHGLYDEALAL 930 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchh--hhhh----eeHHHHHHHHHHHHHHHHHcCccccH-HHHHHHHhcccchhhhhe
Confidence 33445566677777766653211 1111 124445555555555555555 333 334444555555555443
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.08 E-value=5.8e+02 Score=22.12 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
+-++++.+.+ +|+ .+..-...+-.+--..|+.+.|.+++..+. +|.. .|+.+++++-..|+-.-
T Consensus 21 ~~~v~d~ll~--~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~------------aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLE--QGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG------------WFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHh--cCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc------------HHHHHHHHHHHcCchhh
Confidence 4457777777 664 233333444433346799999999999998 5533 89999999999998765
Q ss_pred HHH
Q 005912 169 LLE 171 (670)
Q Consensus 169 A~~ 171 (670)
|.+
T Consensus 85 A~e 87 (88)
T cd08819 85 ARE 87 (88)
T ss_pred hhc
Confidence 543
Done!