Query 005912
Match_columns 670
No_of_seqs 328 out of 2511
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1E-28 3.4E-33 277.8 22.3 181 1-202 32-221 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.8E-28 1.3E-32 273.1 20.4 210 12-266 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1E-23 3.5E-28 237.8 35.0 446 1-649 90-584 (597)
4 2xpi_A Anaphase-promoting comp 99.9 3.7E-22 1.3E-26 225.1 31.3 453 6-643 64-546 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-19 3.6E-24 212.6 5.8 162 1-175 133-306 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 7.6E-19 2.6E-23 205.5 10.0 133 29-174 126-260 (1134)
7 2y4t_A DNAJ homolog subfamily 99.5 1.6E-11 5.5E-16 132.7 34.9 290 2-361 33-351 (450)
8 1w3b_A UDP-N-acetylglucosamine 99.5 4.6E-11 1.6E-15 127.2 33.1 305 3-361 41-361 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.5 7.5E-11 2.6E-15 125.5 34.8 307 3-361 7-327 (388)
10 2y4t_A DNAJ homolog subfamily 99.4 5.5E-10 1.9E-14 120.6 31.4 285 2-347 67-371 (450)
11 3ieg_A DNAJ homolog subfamily 99.3 2.4E-08 8.1E-13 103.2 36.9 294 3-361 11-328 (359)
12 2gw1_A Mitochondrial precursor 99.2 7.3E-09 2.5E-13 113.3 30.2 340 3-361 14-471 (514)
13 2gw1_A Mitochondrial precursor 99.2 6.1E-08 2.1E-12 105.8 35.9 98 31-138 7-104 (514)
14 3hym_B Cell division cycle pro 99.2 4.8E-08 1.6E-12 99.9 31.3 284 3-355 30-321 (330)
15 1fch_A Peroxisomal targeting s 99.1 9E-09 3.1E-13 107.7 23.5 296 5-361 35-352 (368)
16 3ieg_A DNAJ homolog subfamily 99.1 4.1E-07 1.4E-11 93.7 34.8 289 3-349 45-350 (359)
17 3hym_B Cell division cycle pro 99.1 6.9E-08 2.4E-12 98.7 28.7 270 26-361 18-292 (330)
18 3mkr_A Coatomer subunit epsilo 99.1 1.6E-08 5.5E-13 104.8 23.8 276 2-359 6-285 (291)
19 1fch_A Peroxisomal targeting s 99.0 2.3E-08 7.8E-13 104.6 23.1 227 3-282 72-314 (368)
20 4eqf_A PEX5-related protein; a 99.0 1.1E-08 3.8E-13 107.5 20.6 227 3-282 73-310 (365)
21 3fp2_A TPR repeat-containing p 99.0 1.4E-07 4.8E-12 103.9 29.7 245 86-361 218-484 (537)
22 1b89_A Protein (clathrin heavy 99.0 1E-09 3.4E-14 120.1 11.6 280 7-361 15-304 (449)
23 3cv0_A Peroxisome targeting si 99.0 5.2E-08 1.8E-12 99.5 22.8 225 3-282 29-269 (327)
24 4eqf_A PEX5-related protein; a 98.9 4.4E-08 1.5E-12 102.9 21.1 271 29-360 64-348 (365)
25 3mkr_A Coatomer subunit epsilo 98.9 4.8E-08 1.6E-12 101.2 19.4 223 2-283 41-265 (291)
26 3cv0_A Peroxisome targeting si 98.9 3E-07 1E-11 93.8 24.9 261 31-362 22-309 (327)
27 1b89_A Protein (clathrin heavy 98.8 1.8E-08 6.1E-13 110.2 13.3 104 42-174 15-118 (449)
28 3uq3_A Heat shock protein STI1 98.8 2.9E-07 9.7E-12 90.5 20.9 221 3-283 13-237 (258)
29 2vq2_A PILW, putative fimbrial 98.8 8.4E-07 2.9E-11 85.2 23.1 193 3-240 16-210 (225)
30 2ho1_A Type 4 fimbrial biogene 98.8 6.4E-07 2.2E-11 88.4 22.7 193 3-241 45-238 (252)
31 3fp2_A TPR repeat-containing p 98.7 1.2E-06 4.3E-11 96.2 25.1 258 9-336 216-493 (537)
32 2ho1_A Type 4 fimbrial biogene 98.7 2.5E-06 8.4E-11 84.2 23.4 203 30-283 37-239 (252)
33 2vq2_A PILW, putative fimbrial 98.7 2E-06 6.7E-11 82.6 22.0 203 29-282 7-211 (225)
34 1xnf_A Lipoprotein NLPI; TPR, 98.7 2.2E-06 7.6E-11 85.2 21.5 225 6-283 16-245 (275)
35 2q7f_A YRRB protein; TPR, prot 98.6 1.6E-06 5.5E-11 84.6 18.7 190 4-240 32-221 (243)
36 3nf1_A KLC 1, kinesin light ch 98.6 3.6E-07 1.2E-11 92.5 14.1 169 3-178 35-223 (311)
37 3as5_A MAMA; tetratricopeptide 98.6 2.8E-06 9.6E-11 78.5 17.6 159 3-180 16-174 (186)
38 1ouv_A Conserved hypothetical 98.5 2.8E-05 9.5E-10 78.1 26.0 216 4-285 15-254 (273)
39 1xnf_A Lipoprotein NLPI; TPR, 98.5 1.9E-06 6.3E-11 85.8 17.0 218 3-276 51-269 (275)
40 3uq3_A Heat shock protein STI1 98.5 1.1E-05 3.7E-10 79.1 21.4 224 67-360 5-228 (258)
41 2q7f_A YRRB protein; TPR, prot 98.5 4.5E-06 1.5E-10 81.4 18.3 159 3-180 65-223 (243)
42 2ond_A Cleavage stimulation fa 98.5 1.9E-05 6.5E-10 81.6 24.0 220 12-283 33-271 (308)
43 2pl2_A Hypothetical conserved 98.5 7.6E-06 2.6E-10 80.2 19.8 156 3-180 13-181 (217)
44 3sf4_A G-protein-signaling mod 98.5 7.2E-06 2.5E-10 86.2 20.0 306 4-356 18-364 (406)
45 3ro2_A PINS homolog, G-protein 98.5 7E-06 2.4E-10 83.1 19.1 283 4-334 14-332 (338)
46 3u4t_A TPR repeat-containing p 98.4 1.9E-05 6.5E-10 78.5 21.6 238 3-283 11-251 (272)
47 2pl2_A Hypothetical conserved 98.4 1.5E-05 5.2E-10 78.0 19.3 198 27-279 2-211 (217)
48 3vtx_A MAMA; tetratricopeptide 98.4 4E-05 1.4E-09 71.9 20.6 159 3-180 13-171 (184)
49 4a1s_A PINS, partner of inscut 98.4 7.1E-06 2.4E-10 87.1 17.0 285 4-335 57-373 (411)
50 2fo7_A Synthetic consensus TPR 98.3 1.3E-05 4.6E-10 69.4 15.5 131 32-180 3-133 (136)
51 2xm6_A Protein corresponding t 98.3 0.0015 5.2E-08 71.7 35.8 310 8-359 56-423 (490)
52 2ond_A Cleavage stimulation fa 98.3 0.0001 3.5E-09 76.0 23.6 189 7-240 69-269 (308)
53 3edt_B KLC 2, kinesin light ch 98.3 2E-05 6.9E-10 77.9 17.3 166 6-178 12-197 (283)
54 3as5_A MAMA; tetratricopeptide 98.3 9.5E-05 3.3E-09 68.0 20.7 165 30-240 8-172 (186)
55 2fo7_A Synthetic consensus TPR 98.3 1.9E-05 6.6E-10 68.4 15.0 125 2-136 8-132 (136)
56 1ouv_A Conserved hypothetical 98.2 0.0006 2E-08 68.2 26.7 228 29-335 5-252 (273)
57 2h6f_A Protein farnesyltransfe 98.2 0.00012 4E-09 79.0 21.9 220 4-279 106-344 (382)
58 3nf1_A KLC 1, kinesin light ch 98.2 2.2E-05 7.6E-10 79.1 14.9 250 65-361 25-300 (311)
59 3ro2_A PINS homolog, G-protein 98.1 1.5E-05 5.2E-10 80.6 12.9 249 3-282 51-332 (338)
60 1xi4_A Clathrin heavy chain; a 98.1 0.0088 3E-07 73.2 38.4 101 220-360 1142-1242(1630)
61 2xm6_A Protein corresponding t 98.1 0.0087 3E-07 65.6 36.2 234 13-285 25-291 (490)
62 1hz4_A MALT regulatory protein 98.1 0.001 3.4E-08 69.7 27.2 247 4-282 23-282 (373)
63 3u4t_A TPR repeat-containing p 98.1 0.0006 2E-08 67.5 23.8 227 71-360 7-242 (272)
64 3sf4_A G-protein-signaling mod 98.1 2E-05 6.9E-10 82.7 13.5 246 3-282 55-336 (406)
65 4a1s_A PINS, partner of inscut 98.1 0.00011 3.6E-09 78.0 18.5 281 32-361 50-365 (411)
66 2ooe_A Cleavage stimulation fa 98.1 0.0005 1.7E-08 76.4 24.8 218 13-282 256-492 (530)
67 1xi4_A Clathrin heavy chain; a 98.1 0.00063 2.1E-08 83.1 26.7 279 7-360 1088-1376(1630)
68 2h6f_A Protein farnesyltransfe 98.1 0.00038 1.3E-08 74.9 22.8 256 30-352 97-366 (382)
69 4g1t_A Interferon-induced prot 98.1 0.0035 1.2E-07 67.6 30.6 172 4-180 60-277 (472)
70 3ulq_A Response regulator aspa 98.1 0.00013 4.5E-09 77.2 18.8 236 4-282 112-368 (383)
71 3vtx_A MAMA; tetratricopeptide 98.1 0.00047 1.6E-08 64.4 20.6 165 29-240 4-169 (184)
72 3edt_B KLC 2, kinesin light ch 98.0 3.9E-05 1.3E-09 75.9 12.0 173 3-178 51-280 (283)
73 4gyw_A UDP-N-acetylglucosamine 98.0 0.00024 8.1E-09 82.9 19.8 153 3-177 17-172 (723)
74 4abn_A Tetratricopeptide repea 97.9 0.00019 6.6E-09 79.2 17.7 214 11-277 84-316 (474)
75 2ooe_A Cleavage stimulation fa 97.9 0.00064 2.2E-08 75.5 21.8 152 8-180 292-455 (530)
76 4i17_A Hypothetical protein; T 97.9 0.00033 1.1E-08 68.1 16.4 145 4-166 16-169 (228)
77 4abn_A Tetratricopeptide repea 97.9 0.00019 6.5E-09 79.3 16.3 159 4-180 111-288 (474)
78 3ulq_A Response regulator aspa 97.9 0.0013 4.4E-08 69.4 21.9 300 4-361 21-361 (383)
79 3q15_A PSP28, response regulat 97.8 0.00099 3.4E-08 70.4 20.5 236 5-281 111-364 (378)
80 3qky_A Outer membrane assembly 97.7 0.001 3.5E-08 66.2 17.7 162 3-180 23-225 (261)
81 1hz4_A MALT regulatory protein 97.7 0.015 5.3E-07 60.5 27.5 277 36-361 20-315 (373)
82 3mv2_B Coatomer subunit epsilo 97.7 0.0019 6.3E-08 67.5 19.2 164 3-180 108-283 (310)
83 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.0022 7.6E-08 61.1 18.3 138 31-180 7-151 (213)
84 1qqe_A Vesicular transport pro 97.6 0.0026 8.8E-08 64.9 19.4 218 32-279 39-266 (292)
85 4gyw_A UDP-N-acetylglucosamine 97.6 0.0014 4.7E-08 76.5 19.1 132 29-180 8-141 (723)
86 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0027 9.1E-08 62.0 18.2 164 3-180 12-214 (225)
87 3q15_A PSP28, response regulat 97.6 0.029 9.8E-07 59.0 27.2 305 5-361 22-358 (378)
88 2r5s_A Uncharacterized protein 97.6 0.00071 2.4E-08 63.4 12.8 156 3-177 14-171 (176)
89 2vsy_A XCC0866; transferase, g 97.5 0.0018 6.1E-08 72.6 18.1 153 8-180 2-158 (568)
90 1qqe_A Vesicular transport pro 97.5 0.0014 4.7E-08 67.0 14.8 172 3-179 45-228 (292)
91 3mv2_B Coatomer subunit epsilo 97.5 0.00094 3.2E-08 69.7 13.2 145 14-178 85-239 (310)
92 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0041 1.4E-07 63.9 17.9 164 8-179 4-184 (307)
93 3qou_A Protein YBBN; thioredox 97.5 0.0028 9.6E-08 64.7 16.6 154 4-176 126-281 (287)
94 3gw4_A Uncharacterized protein 97.4 0.0015 5.2E-08 61.4 13.5 163 5-178 2-175 (203)
95 1na0_A Designed protein CTPR3; 97.4 0.0035 1.2E-07 53.2 14.4 98 30-136 9-106 (125)
96 4g1t_A Interferon-induced prot 97.4 0.009 3.1E-07 64.2 21.0 287 26-360 47-355 (472)
97 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.0052 1.8E-07 58.4 16.9 124 4-137 15-151 (213)
98 4i17_A Hypothetical protein; T 97.4 0.0066 2.3E-07 58.6 17.6 141 28-179 5-146 (228)
99 1a17_A Serine/threonine protei 97.3 0.0053 1.8E-07 55.4 14.9 130 30-177 13-144 (166)
100 1na0_A Designed protein CTPR3; 97.3 0.0045 1.5E-07 52.5 13.1 105 3-118 17-122 (125)
101 3qky_A Outer membrane assembly 97.2 0.017 5.7E-07 57.2 18.3 138 29-180 14-178 (261)
102 2lni_A Stress-induced-phosphop 97.1 0.011 3.7E-07 51.0 14.3 120 27-164 13-132 (133)
103 2qfc_A PLCR protein; TPR, HTH, 97.1 0.021 7.2E-07 57.9 18.6 168 2-176 82-263 (293)
104 2vyi_A SGTA protein; chaperone 97.1 0.0082 2.8E-07 51.3 13.3 120 29-166 11-130 (131)
105 3u3w_A Transcriptional activat 97.1 0.014 4.9E-07 59.1 17.3 169 2-177 82-264 (293)
106 1a17_A Serine/threonine protei 97.1 0.0082 2.8E-07 54.1 13.5 122 3-135 21-145 (166)
107 2yhc_A BAMD, UPF0169 lipoprote 97.0 0.071 2.4E-06 51.6 21.0 171 30-242 4-214 (225)
108 3u3w_A Transcriptional activat 97.0 0.013 4.5E-07 59.4 16.1 132 36-178 81-224 (293)
109 3urz_A Uncharacterized protein 96.9 0.011 3.7E-07 57.0 13.8 152 4-180 13-187 (208)
110 2pzi_A Probable serine/threoni 96.9 0.004 1.4E-07 71.9 12.2 154 6-179 402-563 (681)
111 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0057 1.9E-07 62.8 11.4 167 3-177 44-222 (307)
112 2vyi_A SGTA protein; chaperone 96.8 0.015 5.2E-07 49.5 12.5 109 3-122 20-129 (131)
113 2e2e_A Formate-dependent nitri 96.7 0.0079 2.7E-07 55.7 10.7 122 5-137 20-145 (177)
114 3gw4_A Uncharacterized protein 96.7 0.014 4.7E-07 54.6 11.9 126 41-178 3-135 (203)
115 2lni_A Stress-induced-phosphop 96.7 0.026 9E-07 48.4 12.9 102 63-180 12-114 (133)
116 2vsy_A XCC0866; transferase, g 96.6 0.043 1.5E-06 61.3 17.8 151 43-240 2-156 (568)
117 1p5q_A FKBP52, FK506-binding p 96.6 0.022 7.5E-07 59.5 14.4 129 29-177 146-292 (336)
118 3qou_A Protein YBBN; thioredox 96.6 0.03 1E-06 56.9 15.0 134 27-180 114-249 (287)
119 3rjv_A Putative SEL1 repeat pr 96.6 0.16 5.5E-06 48.8 19.5 115 5-135 28-157 (212)
120 1elw_A TPR1-domain of HOP; HOP 96.6 0.034 1.2E-06 46.4 12.8 100 66-180 3-102 (118)
121 3ro3_A PINS homolog, G-protein 96.6 0.021 7.1E-07 50.4 12.0 140 31-178 10-157 (164)
122 4ga2_A E3 SUMO-protein ligase 96.6 0.0049 1.7E-07 56.3 7.7 139 5-165 7-149 (150)
123 2kck_A TPR repeat; tetratricop 96.5 0.013 4.4E-07 48.6 9.6 99 30-138 6-108 (112)
124 2dba_A Smooth muscle cell asso 96.5 0.05 1.7E-06 47.7 13.9 100 65-180 26-129 (148)
125 3e4b_A ALGK; tetratricopeptide 96.5 0.043 1.5E-06 59.8 16.2 158 109-285 178-354 (452)
126 1elr_A TPR2A-domain of HOP; HO 96.5 0.026 9.1E-07 48.1 11.6 101 30-136 4-108 (131)
127 4e6h_A MRNA 3'-END-processing 96.4 0.078 2.7E-06 61.2 18.4 194 5-241 353-570 (679)
128 1elw_A TPR1-domain of HOP; HOP 96.4 0.043 1.5E-06 45.7 12.4 98 29-136 3-101 (118)
129 3sz7_A HSC70 cochaperone (SGT) 96.4 0.088 3E-06 48.0 15.5 100 65-180 9-109 (164)
130 1p5q_A FKBP52, FK506-binding p 96.4 0.035 1.2E-06 57.9 14.2 123 3-135 155-293 (336)
131 2r5s_A Uncharacterized protein 96.4 0.042 1.4E-06 51.0 13.3 128 33-180 9-138 (176)
132 2e2e_A Formate-dependent nitri 96.4 0.015 5.2E-07 53.7 10.1 122 41-181 21-146 (177)
133 3gyz_A Chaperone protein IPGC; 96.4 0.046 1.6E-06 50.4 13.2 99 66-180 35-134 (151)
134 1elr_A TPR2A-domain of HOP; HO 96.4 0.021 7.2E-07 48.7 10.3 106 3-116 12-121 (131)
135 2kck_A TPR repeat; tetratricop 96.4 0.027 9.3E-07 46.6 10.7 102 66-180 5-107 (112)
136 2qfc_A PLCR protein; TPR, HTH, 96.3 0.13 4.6E-06 51.8 17.7 136 34-178 79-224 (293)
137 3rjv_A Putative SEL1 repeat pr 96.3 0.33 1.1E-05 46.5 19.4 147 13-179 4-158 (212)
138 2vgx_A Chaperone SYCD; alterna 96.3 0.059 2E-06 49.0 13.2 99 66-180 20-119 (148)
139 3q49_B STIP1 homology and U bo 96.3 0.09 3.1E-06 45.7 14.0 101 64-179 6-106 (137)
140 2dba_A Smooth muscle cell asso 96.2 0.078 2.7E-06 46.4 13.6 98 28-136 26-128 (148)
141 4ga2_A E3 SUMO-protein ligase 96.2 0.0087 3E-07 54.6 7.2 121 40-180 7-130 (150)
142 4e6h_A MRNA 3'-END-processing 96.2 0.24 8.3E-06 57.1 20.9 221 13-283 327-571 (679)
143 3urz_A Uncharacterized protein 96.2 0.12 4.1E-06 49.4 15.8 59 113-180 60-118 (208)
144 4gco_A Protein STI-1; structur 96.2 0.043 1.5E-06 48.5 11.6 96 32-137 15-111 (126)
145 3q49_B STIP1 homology and U bo 96.2 0.079 2.7E-06 46.1 13.2 99 28-136 7-106 (137)
146 3gyz_A Chaperone protein IPGC; 96.1 0.036 1.2E-06 51.1 11.1 98 29-137 35-134 (151)
147 2xcb_A PCRH, regulatory protei 96.1 0.077 2.6E-06 47.3 13.2 98 67-180 18-116 (142)
148 4b4t_Q 26S proteasome regulato 96.1 0.11 3.7E-06 55.0 16.5 165 4-178 13-203 (434)
149 3sz7_A HSC70 cochaperone (SGT) 96.1 0.055 1.9E-06 49.4 12.0 99 29-137 10-109 (164)
150 2fbn_A 70 kDa peptidylprolyl i 95.9 0.074 2.5E-06 50.1 12.6 158 6-180 15-187 (198)
151 2vgx_A Chaperone SYCD; alterna 95.9 0.061 2.1E-06 48.9 11.5 99 29-137 20-119 (148)
152 3upv_A Heat shock protein STI1 95.9 0.088 3E-06 45.5 12.0 97 30-136 4-101 (126)
153 3upv_A Heat shock protein STI1 95.8 0.13 4.5E-06 44.3 12.8 98 67-180 4-102 (126)
154 2pzi_A Probable serine/threoni 95.8 0.022 7.4E-07 65.7 9.7 141 3-165 441-583 (681)
155 4gco_A Protein STI-1; structur 95.7 0.18 6.3E-06 44.3 13.6 102 63-180 8-111 (126)
156 3ro3_A PINS homolog, G-protein 95.7 0.038 1.3E-06 48.7 8.8 130 3-135 17-157 (164)
157 2fbn_A 70 kDa peptidylprolyl i 95.6 0.098 3.3E-06 49.3 12.0 122 4-135 47-185 (198)
158 4f3v_A ESX-1 secretion system 95.6 0.081 2.8E-06 54.3 12.0 123 3-137 110-238 (282)
159 3k9i_A BH0479 protein; putativ 95.6 0.011 3.9E-07 51.0 4.8 86 7-98 2-89 (117)
160 2xcb_A PCRH, regulatory protei 95.5 0.12 4E-06 46.1 11.7 96 31-136 19-115 (142)
161 2xev_A YBGF; tetratricopeptide 95.5 0.12 4.2E-06 44.2 11.3 96 72-180 7-106 (129)
162 4f3v_A ESX-1 secretion system 95.5 0.15 5.2E-06 52.3 13.6 127 36-180 108-238 (282)
163 1wao_1 Serine/threonine protei 95.4 0.12 4.1E-06 56.8 13.4 117 4-131 15-134 (477)
164 3dra_A Protein farnesyltransfe 95.3 1.8 6.3E-05 44.6 21.4 228 6-282 43-287 (306)
165 3e4b_A ALGK; tetratricopeptide 95.3 0.38 1.3E-05 52.2 16.9 193 68-285 177-390 (452)
166 1hxi_A PEX5, peroxisome target 95.2 0.13 4.6E-06 44.8 10.7 96 69-180 19-115 (121)
167 2xev_A YBGF; tetratricopeptide 95.2 0.3 1E-05 41.8 12.7 90 36-136 8-105 (129)
168 4b4t_Q 26S proteasome regulato 95.1 0.23 7.8E-06 52.4 13.9 212 38-281 12-244 (434)
169 1kt0_A FKBP51, 51 kDa FK506-bi 95.0 0.22 7.4E-06 54.3 13.9 130 30-179 268-415 (457)
170 4gcn_A Protein STI-1; structur 94.9 0.3 1E-05 42.8 12.0 94 34-134 12-110 (127)
171 2c2l_A CHIP, carboxy terminus 94.7 0.32 1.1E-05 49.0 13.5 97 66-178 3-100 (281)
172 4gcn_A Protein STI-1; structur 94.7 0.18 6.2E-06 44.3 10.0 104 67-179 8-112 (127)
173 1hxi_A PEX5, peroxisome target 94.6 0.2 6.7E-06 43.7 9.9 92 34-136 21-114 (121)
174 1wao_1 Serine/threonine protei 94.5 0.096 3.3E-06 57.6 9.4 117 38-174 14-134 (477)
175 3n71_A Histone lysine methyltr 94.2 0.29 9.9E-06 54.2 12.4 132 40-179 319-464 (490)
176 3k9i_A BH0479 protein; putativ 94.1 0.084 2.9E-06 45.3 6.4 87 42-137 2-91 (117)
177 1ihg_A Cyclophilin 40; ppiase 93.9 0.54 1.8E-05 49.7 13.5 125 31-171 224-362 (370)
178 1kt0_A FKBP51, 51 kDa FK506-bi 93.9 0.34 1.2E-05 52.7 12.2 121 3-133 276-412 (457)
179 3mkq_A Coatomer beta'-subunit; 93.8 0.36 1.2E-05 55.5 12.9 102 39-176 661-762 (814)
180 3n71_A Histone lysine methyltr 93.8 0.23 7.9E-06 55.0 10.6 130 4-136 318-464 (490)
181 2c2l_A CHIP, carboxy terminus 93.6 0.72 2.5E-05 46.4 13.3 97 29-136 3-101 (281)
182 2if4_A ATFKBP42; FKBP-like, al 93.6 0.14 4.9E-06 53.3 8.1 130 31-180 180-329 (338)
183 1ihg_A Cyclophilin 40; ppiase 93.2 0.49 1.7E-05 50.0 11.8 116 3-128 231-362 (370)
184 1klx_A Cysteine rich protein B 93.1 1.3 4.4E-05 39.4 12.7 119 2-138 2-128 (138)
185 3rkv_A Putative peptidylprolyl 92.9 1.1 3.8E-05 40.2 12.2 89 4-98 20-125 (162)
186 3rkv_A Putative peptidylprolyl 92.4 1 3.5E-05 40.5 11.3 99 31-136 12-126 (162)
187 2l6j_A TPR repeat-containing p 92.2 0.31 1E-05 40.3 6.9 65 28-98 2-66 (111)
188 2l6j_A TPR repeat-containing p 91.9 0.12 4.3E-06 42.8 4.0 66 65-137 2-68 (111)
189 2if4_A ATFKBP42; FKBP-like, al 91.8 0.26 8.9E-06 51.3 7.2 120 4-136 188-328 (338)
190 2hr2_A Hypothetical protein; a 91.4 1.9 6.3E-05 40.2 11.8 98 69-178 13-130 (159)
191 2kat_A Uncharacterized protein 91.3 1.8 6.2E-05 36.3 10.9 79 88-179 3-82 (115)
192 2uy1_A Cleavage stimulation fa 90.8 5.5 0.00019 43.7 17.0 21 4-24 222-242 (493)
193 3dra_A Protein farnesyltransfe 90.6 17 0.00057 37.2 22.9 216 78-360 43-279 (306)
194 2hr2_A Hypothetical protein; a 90.4 3 0.0001 38.8 12.2 99 31-136 12-131 (159)
195 2kat_A Uncharacterized protein 90.1 1.8 6E-05 36.4 9.7 63 66-135 18-81 (115)
196 3qwp_A SET and MYND domain-con 89.9 1.4 4.7E-05 47.7 11.0 97 74-177 294-398 (429)
197 1na3_A Designed protein CTPR2; 89.9 2.8 9.7E-05 32.8 10.4 65 66-136 8-72 (91)
198 3qww_A SET and MYND domain-con 89.9 1.7 5.9E-05 47.1 11.7 91 82-177 310-409 (433)
199 3ma5_A Tetratricopeptide repea 89.8 1.8 6E-05 35.8 9.3 62 107-177 7-68 (100)
200 1klx_A Cysteine rich protein B 89.6 1.6 5.6E-05 38.7 9.5 114 42-181 7-128 (138)
201 1na3_A Designed protein CTPR2; 89.2 2.5 8.5E-05 33.1 9.5 80 30-119 9-89 (91)
202 3qwp_A SET and MYND domain-con 88.6 1.8 6.1E-05 46.9 10.6 89 42-134 299-398 (429)
203 3mkq_B Coatomer subunit alpha; 88.2 8.6 0.00029 36.3 13.6 102 39-176 14-115 (177)
204 2uy1_A Cleavage stimulation fa 88.1 6.3 0.00022 43.2 14.8 45 12-57 196-240 (493)
205 3mkq_A Coatomer beta'-subunit; 87.2 13 0.00043 42.4 17.3 46 117-176 662-707 (814)
206 3ma5_A Tetratricopeptide repea 87.1 2.7 9.3E-05 34.6 8.7 63 66-135 6-69 (100)
207 3qww_A SET and MYND domain-con 86.5 1.5 5.2E-05 47.5 8.5 27 108-134 383-409 (433)
208 3q7a_A Farnesyltransferase alp 84.3 43 0.0015 35.0 22.2 154 8-180 67-238 (349)
209 3q7a_A Farnesyltransferase alp 81.0 57 0.0019 34.0 18.0 166 7-179 100-331 (349)
210 2kc7_A BFR218_protein; tetratr 76.2 13 0.00045 29.6 8.8 55 3-58 8-63 (99)
211 3mkq_B Coatomer subunit alpha; 74.9 56 0.0019 30.7 17.4 127 5-176 15-141 (177)
212 3dss_A Geranylgeranyl transfer 72.6 71 0.0024 33.0 15.2 157 10-180 125-305 (331)
213 1zu2_A Mitochondrial import re 69.7 9.9 0.00034 35.2 7.0 119 5-138 12-149 (158)
214 2kc7_A BFR218_protein; tetratr 69.0 15 0.0005 29.2 7.4 59 113-180 6-65 (99)
215 1wy6_A Hypothetical protein ST 67.3 74 0.0025 28.9 13.8 124 6-139 18-157 (172)
216 3u64_A Protein TP_0956; tetrat 64.7 69 0.0024 32.7 12.7 109 66-186 153-276 (301)
217 3bee_A Putative YFRE protein; 64.6 57 0.0019 26.6 11.2 72 105-186 4-78 (93)
218 1pc2_A Mitochondria fission pr 63.2 30 0.001 31.7 8.8 86 46-137 14-101 (152)
219 1wdy_A 2-5A-dependent ribonucl 59.6 1.2E+02 0.0041 28.7 14.4 41 232-276 199-239 (285)
220 2ff4_A Probable regulatory pro 58.0 40 0.0014 35.5 10.1 73 584-657 177-257 (388)
221 1pc2_A Mitochondria fission pr 57.0 38 0.0013 31.0 8.3 85 85-180 13-101 (152)
222 3ly7_A Transcriptional activat 56.6 35 0.0012 36.0 9.1 69 64-139 274-342 (372)
223 2ff4_A Probable regulatory pro 56.5 15 0.0005 38.9 6.3 76 32-113 173-251 (388)
224 1zu2_A Mitochondrial import re 56.4 15 0.0005 34.0 5.5 90 41-137 13-121 (158)
225 1dce_A Protein (RAB geranylger 54.9 1.5E+02 0.0052 32.7 14.7 152 11-180 45-222 (567)
226 3ly7_A Transcriptional activat 54.6 1.1E+02 0.0038 32.1 12.6 74 27-111 274-347 (372)
227 1v54_E Cytochrome C oxidase po 52.6 31 0.0011 29.5 6.3 61 48-116 28-88 (109)
228 2v5f_A Prolyl 4-hydroxylase su 51.5 72 0.0025 26.1 8.8 73 106-180 4-76 (104)
229 4b4t_P 26S proteasome regulato 50.3 2.3E+02 0.0079 30.1 14.8 158 9-178 30-205 (445)
230 1wy6_A Hypothetical protein ST 50.0 90 0.0031 28.4 9.2 86 6-104 72-157 (172)
231 2v5f_A Prolyl 4-hydroxylase su 50.0 96 0.0033 25.3 9.4 65 31-98 6-74 (104)
232 2ve8_A FTSK, DNA translocase F 47.3 20 0.00067 28.7 4.0 21 629-649 38-58 (73)
233 4gns_B Protein CSD3, chitin bi 45.3 93 0.0032 36.0 11.0 129 34-177 252-398 (754)
234 3dss_A Geranylgeranyl transfer 44.1 2.8E+02 0.0096 28.4 22.3 158 5-180 39-223 (331)
235 3eu9_A Huntingtin-interacting 43.8 1.3E+02 0.0044 27.7 10.3 23 261-283 215-237 (240)
236 3b7b_A Euchromatic histone-lys 41.8 89 0.0031 29.1 8.9 220 2-282 15-236 (237)
237 4fhn_B Nucleoporin NUP120; pro 40.0 2.1E+02 0.0072 34.5 13.7 145 4-170 821-991 (1139)
238 1dce_A Protein (RAB geranylger 39.2 3.6E+02 0.012 29.6 14.5 124 42-181 41-175 (567)
239 2p58_C Putative type III secre 39.0 1.5E+02 0.0052 25.3 8.4 86 10-111 22-107 (116)
240 3aji_A 26S proteasome non-ATPa 38.9 1.4E+02 0.0049 27.5 9.8 115 36-173 9-126 (231)
241 1v54_E Cytochrome C oxidase po 37.9 1.9E+02 0.0065 24.7 10.1 59 75-136 16-74 (109)
242 2y69_E Cytochrome C oxidase su 37.7 66 0.0023 29.0 6.3 81 29-117 50-132 (152)
243 3u64_A Protein TP_0956; tetrat 37.7 1E+02 0.0035 31.4 8.7 92 11-113 179-283 (301)
244 3r2k_A Bacterioferritin, BFR; 37.7 21 0.0007 32.1 3.3 63 558-629 51-113 (154)
245 3bee_A Putative YFRE protein; 37.7 1.6E+02 0.0055 23.8 11.2 71 64-138 3-74 (93)
246 1jig_A DLP-2; dodecamer, four- 37.4 84 0.0029 27.7 7.4 70 559-629 51-121 (146)
247 2uwj_G Type III export protein 36.4 1.5E+02 0.005 25.4 7.9 87 10-112 21-107 (115)
248 4b4o_A Epimerase family protei 36.1 40 0.0014 33.5 5.5 24 602-625 270-293 (298)
249 1n1q_A DPS protein; four-helix 34.7 37 0.0013 30.3 4.5 70 559-629 54-124 (149)
250 1nzn_A CGI-135 protein, fissio 34.7 75 0.0026 28.0 6.3 89 43-137 14-104 (126)
251 2mys_C Myosin; muscle protein, 34.1 1.9E+02 0.0066 24.2 9.2 91 564-657 12-129 (149)
252 2d5k_A DPS, DPS family protein 32.7 22 0.00077 32.3 2.6 72 558-630 52-124 (156)
253 3uno_A Probable bacterioferrit 31.3 29 0.00098 32.9 3.2 78 558-644 55-151 (189)
254 1zl8_A LIN-7; heterodimer, alp 31.0 29 0.00099 25.5 2.3 23 556-578 6-28 (53)
255 1eum_A Ferritin 1; ECFTNA, met 30.6 53 0.0018 30.0 4.9 78 558-644 50-146 (165)
256 1vlg_A Ferritin; TM1128, struc 30.3 56 0.0019 30.2 5.1 62 559-629 65-128 (176)
257 4am5_A Bacterioferritin; metal 29.7 33 0.0011 31.1 3.3 65 558-630 51-115 (159)
258 4h7y_A Dual specificity protei 28.6 1.9E+02 0.0066 26.5 8.0 105 29-139 12-126 (161)
259 2cih_A Ferritin heavy chain; a 28.2 31 0.0011 32.4 2.9 124 507-645 12-162 (183)
260 1ug3_A EIF4GI, eukaryotic prot 28.2 1.8E+02 0.0062 29.8 9.1 98 33-137 14-115 (339)
261 1rcd_A L ferritin; iron storag 27.4 34 0.0012 31.7 2.9 61 558-627 59-122 (173)
262 1ji5_A DLP-1; dodecamer, four- 26.4 65 0.0022 28.2 4.6 71 558-629 46-117 (142)
263 2y69_E Cytochrome C oxidase su 26.0 3.7E+02 0.012 24.2 10.1 49 86-136 69-117 (152)
264 1krq_A Ferritin; H-chain like 25.3 28 0.00096 32.0 1.9 80 559-645 51-147 (167)
265 3bvf_A Ferritin; iron storage, 25.0 1.3E+02 0.0045 27.8 6.6 81 558-645 64-161 (181)
266 3qz3_A Ferritin; structural ge 24.9 43 0.0015 31.4 3.2 23 558-580 59-81 (184)
267 4fke_A Aminopeptidase N; zinc 24.9 4.9E+02 0.017 30.5 13.0 98 70-180 689-788 (909)
268 3e6s_A Ferritin; iron storage, 24.8 45 0.0015 30.8 3.2 23 558-580 49-71 (168)
269 3uoi_A Bacterioferritin, BFR; 24.5 45 0.0015 29.9 3.2 63 559-629 54-116 (161)
270 2vxx_A Starvation induced DNA 24.2 1.3E+02 0.0043 28.1 6.4 70 560-630 75-146 (192)
271 1nzn_A CGI-135 protein, fissio 24.0 3E+02 0.01 24.1 8.3 85 86-180 17-104 (126)
272 1y8m_A FIS1; mitochondria, unk 22.6 4.1E+02 0.014 23.9 9.0 71 64-138 36-108 (144)
273 4fhn_B Nucleoporin NUP120; pro 22.4 8.6E+02 0.03 29.1 14.9 129 34-181 816-969 (1139)
274 2f8y_A Notch homolog 1, transl 22.2 1.1E+02 0.0036 28.2 5.4 81 563-651 138-222 (223)
275 3oj5_A Ferritin family protein 22.1 96 0.0033 28.9 5.1 61 559-628 56-118 (189)
276 1zbp_A Hypothetical protein VP 22.0 1.6E+02 0.0053 29.6 6.7 119 2-136 4-129 (273)
277 3ka8_A Ferritin, middle subuni 21.7 54 0.0018 30.5 3.1 69 508-580 9-81 (176)
278 3twr_A Tankyrase-2; ankyrin re 21.2 1.5E+02 0.0051 25.8 6.0 77 563-647 55-135 (165)
279 3utm_A Tankyrase-1; tankyrase, 21.1 5.7E+02 0.019 24.7 12.1 247 2-277 28-301 (351)
280 3gvy_A Bacterioferritin; iron 20.8 57 0.002 29.3 3.1 63 559-629 52-114 (161)
281 3d9h_A CDNA FLJ77766, highly s 20.7 4E+02 0.014 25.7 9.7 220 29-285 11-247 (285)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-28 Score=277.84 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=170.0
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHchhCCCCCCCCHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---------PEVAFATFENMEYGEDYMKPDTETYN 71 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~---------~e~A~~lf~~M~~~~~gi~Pd~~tyn 71 (670)
+|++|++.|++++|+++|++|.+.|+.||.+|||+||++|++.+. ++.|.++|++|. ..|+.||.+|||
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~--~~G~~Pd~~tyn 109 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI--VDKVVPNEATFT 109 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH--HTTCCCCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH--HhCCCCCHHHHH
Confidence 378999999999999999999999999999999999999998765 688999999999 899999999999
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
+||.+|++.| ++++|+++|++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 110 ~lI~~~~~~g---~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~-------- 176 (501)
T 4g26_A 110 NGARLAVAKD---DPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP-------- 176 (501)
T ss_dssp HHHHHHHHHT---CHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH--------
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH--------
Confidence 9999999999 89999999999999 9999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 202 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~ 202 (670)
|||+||++|++.|++++|.++|++|++.|+ .|+..+ |+.++..+.
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~--~ps~~T----~~~l~~~F~ 221 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVR--QVSKST----FDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--SBCHHH----HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCC--CcCHHH----HHHHHHHHh
Confidence 999999999999999999999999999998 677664 777766553
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.8e-28 Score=273.13 Aligned_cols=210 Identities=11% Similarity=0.077 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc------
Q 005912 12 SNALEIAYEMEAAGRMATT-FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD------ 84 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~------ 84 (670)
..+..+++.+++.++.++. ..++.+|++||+.|++++|.++|++|. ..|+.||.+|||+||.+|++.+...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~--~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR--RNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH--HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 4566777889888887654 468999999999999999999999999 8999999999999999999877432
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.+++|+++|++|.. .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.|++. |||+||.+||+.|
T Consensus 85 ~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--------tyn~lI~~~~~~g 154 (501)
T 4g26_A 85 GLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--------SYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--------HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------eehHHHHHHHHCC
Confidence 37899999999999 9999999999999999999999999999999999999888887 9999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
++++|.++|++|.+.|+ .|+.. +|+.||.++ ++.|..++|..+|+.|.+.|+.
T Consensus 155 ~~~~A~~l~~~M~~~G~--~Pd~~----ty~~Li~~~---------------------~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 155 DADKAYEVDAHMVESEV--VPEEP----ELAALLKVS---------------------MDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp CHHHHHHHHHHHHHTTC--CCCHH----HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHhcCC--CCCHH----HHHHHHHHH---------------------hhCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998 78887 499999888 8889999999999999999999
Q ss_pred CCcccchhhhhHHHHHHHHHhc
Q 005912 245 PDAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 245 Pd~d~~ty~~LIe~lv~~~~~~ 266 (670)
|+. .||++++ ..|+..
T Consensus 208 ps~--~T~~~l~----~~F~s~ 223 (501)
T 4g26_A 208 VSK--STFDMIE----EWFKSE 223 (501)
T ss_dssp BCH--HHHHHHH----HHHHSH
T ss_pred cCH--HHHHHHH----HHHhcC
Confidence 999 8898777 666653
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1e-23 Score=237.84 Aligned_cols=446 Identities=8% Similarity=-0.065 Sum_probs=332.5
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
++..|.+.|++++|+.+|++|.. ..|+..+++.+..+|.+.|++++|..+|+.+.. ..++..+|+.++.+|.+.
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL----YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----cccchhHHHHHHHHHHHH
Confidence 36789999999999999999984 568999999999999999999999999999852 278999999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc-cc
Q 005912 81 ESYDRVQDVAELLGMMVEDHK--------------RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-HN 145 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~--------------gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~-~~ 145 (670)
| +.++|+++|+++... . +..++..+|+.++.+|.+.|++++|.++|+.|.+........ ..
T Consensus 164 g---~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 164 Y---DWQGALNLLGETNPF-RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp T---CHHHHHHHHCSSCTT-C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred h---hHHHHHHHHhccCCc-cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 9 899999999954321 2 334578999999999999999999999999998764321100 00
Q ss_pred ----CC--------------------CCch----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH
Q 005912 146 ----EG--------------------NFGD----PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL 197 (670)
Q Consensus 146 ----~g--------------------~~pd----tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l 197 (670)
+. ..+. +|+.++.+|++.|++++|..+|+.|.+. +++.. ++..+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~----~~~~l 311 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSD----LLLCK 311 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHH----HHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHH----HHHHH
Confidence 00 0000 4566677888899999999999988654 23333 25555
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 198 VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 198 l~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...+ .+.|..++|..+|+.+...+ |+ +..+|+.++ ..|.+.|+.++|..+|+
T Consensus 312 ~~~~---------------------~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~----~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 312 ADTL---------------------FVRSRFIDVLAITTKILEID--PY-NLDVYPLHL----ASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHH---------------------HHTTCHHHHHHHHHHHHHHC--TT-CCTTHHHHH----HHHHHHTCHHHHHHHHH
T ss_pred HHHH---------------------HHhcCHHHHHHHHHHHHHcC--cc-cHHHHHHHH----HHHHHhCCHHHHHHHHH
Confidence 5444 77889999999999987643 32 235666665 78899999999999999
Q ss_pred HHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhh
Q 005912 278 TLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINR 357 (670)
Q Consensus 278 ~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~e 357 (670)
.|..... .+...+..+...+.+ .|++++|..+|+++....-.+..+|+.+...+++.|++++
T Consensus 364 ~~~~~~~-----~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 364 DLVDRHP-----EKAVTWLAVGIYYLC-------------VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHCT-----TSHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhCc-----ccHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9985432 355666666666654 4669999999999987543344799999999999999998
Q ss_pred hhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhc
Q 005912 358 SRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKD 437 (670)
Q Consensus 358 A~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (670)
|... +..++. ..+.+...|.. +...+
T Consensus 426 A~~~-----------------~~~~~~---~~~~~~~~~~~-l~~~~--------------------------------- 451 (597)
T 2xpi_A 426 AISA-----------------YTTAAR---LFQGTHLPYLF-LGMQH--------------------------------- 451 (597)
T ss_dssp HHHH-----------------HHHHHH---TTTTCSHHHHH-HHHHH---------------------------------
T ss_pred HHHH-----------------HHHHHH---hCccchHHHHH-HHHHH---------------------------------
Confidence 8743 222222 22233444432 11000
Q ss_pred hhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHH
Q 005912 438 EEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFK 517 (670)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (670)
... + + +....+.|+
T Consensus 452 --------------------------------------~~~----------g----------------~--~~~A~~~~~ 465 (597)
T 2xpi_A 452 --------------------------------------MQL----------G----------------N--ILLANEYLQ 465 (597)
T ss_dssp --------------------------------------HHH----------T----------------C--HHHHHHHHH
T ss_pred --------------------------------------HHc----------C----------------C--HHHHHHHHH
Confidence 000 0 0 233455666
Q ss_pred HhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHc----CCccC--hhcHHHHHHHHHcC
Q 005912 518 EMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIEL----GGTPT--IGDCAVIIRAAIRA 591 (670)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~ 591 (670)
.|.+....+...++.+++++. - ..+++.|++++++++++ |..|+ ...|..+..++.+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~--------------~--~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAF--------------N--KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHH--------------H--TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHHhCCCChHHHHHHHHHHH--------------H--hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 666666656666778888772 2 23345599999999988 88998 78999999999999
Q ss_pred CCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCch
Q 005912 592 PLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (670)
+.++.+..+++++.+++ ......|..+..+|.+.|+|++|+..+..+-+. .|.+.
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999999886 336788999999999999999999999888764 34443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.7e-22 Score=225.08 Aligned_cols=453 Identities=9% Similarity=-0.049 Sum_probs=316.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
.+.|.+..+...|..+. .+++..|+.++..|.+.|++++|..+|++|.. ..||..+|+.+..+|.+.| +
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g---~ 132 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTG---D 132 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTT---C
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcC---c
Confidence 34455566666665554 35889999999999999999999999999972 4689999999999999999 8
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC----ccc-ccCCCCc--hHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT----KVL-HNEGNFG--DPLSLYLR 158 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~----~v~-~~~g~~p--dtyn~LI~ 158 (670)
.++|+.+|..+.. ..++..+++.++.+|.+.|++++|.++|+++....... ... ...+..+ .+|+.++.
T Consensus 133 ~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 133 YARAKCLLTKEDL----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp HHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHH
Confidence 8999999999854 46899999999999999999999999998533211000 000 0001111 18999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH----------H-H-HHHHHHcCCCHHHH-----HHH
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI----------E-P-LQEEAELGYEIDYI-----ARY 221 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~----------~-l-l~~m~~~G~~pd~i-----~~~ 221 (670)
+|.+.|++++|..+|++|.+.+. ..++. +..+..... . + +..+...+..+... ...
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~------~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDA-KCYEA------FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHH------HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-hhhHH------HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999988653 12222 222211100 0 0 12222222222211 123
Q ss_pred HHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHH
Q 005912 222 ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEER 301 (670)
Q Consensus 222 ~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~ 301 (670)
+.+.|..++|..+|+.+... .++. .+|+.++ .+|.+.|++++|+.+|+.|...+.. +...+..+...
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~ 348 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSS--DLLLCKA----DTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLAS 348 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCTT-----CCTTHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchH--HHHHHHH----HHHHHhcCHHHHHHHHHHHHHcCcc-----cHHHHHHHHHH
Confidence 55678899999999998765 2444 7787766 8899999999999999999876532 34455555555
Q ss_pred HHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHH
Q 005912 302 LKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDE 381 (670)
Q Consensus 302 l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~ 381 (670)
+.+ .|..++|..++++|....-.+..+++.+...|.+.|++++|... +..
T Consensus 349 ~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------------~~~ 398 (597)
T 2xpi_A 349 LHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY-----------------FSK 398 (597)
T ss_dssp HHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH-----------------HHH
T ss_pred HHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH-----------------HHH
Confidence 554 45699999999999865433448999999999999999998743 222
Q ss_pred HHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHH
Q 005912 382 LISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKE 461 (670)
Q Consensus 382 li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (670)
.+. ..+.+...|......-+..
T Consensus 399 ~~~---~~~~~~~~~~~l~~~~~~~------------------------------------------------------- 420 (597)
T 2xpi_A 399 SST---MDPQFGPAWIGFAHSFAIE------------------------------------------------------- 420 (597)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHH---hCCCCHHHHHHHHHHHHHc-------------------------------------------------------
Confidence 222 2334455555310000000
Q ss_pred HHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHHHHHHhcchh
Q 005912 462 KLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTW 541 (670)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (670)
+ + +....+.|+.|.+....+...++.++.++.
T Consensus 421 ---------------------------g----------------~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--- 452 (597)
T 2xpi_A 421 ---------------------------G----------------E--HDQAISAYTTAARLFQGTHLPYLFLGMQHM--- 452 (597)
T ss_dssp ---------------------------T----------------C--HHHHHHHHHHHHHTTTTCSHHHHHHHHHHH---
T ss_pred ---------------------------C----------------C--HHHHHHHHHHHHHhCccchHHHHHHHHHHH---
Confidence 0 0 234455666666666656667788888772
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhc----CCccC--ccc
Q 005912 542 EREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL----GYVFG--SPL 615 (670)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~ 615 (670)
+...++.|++++++++++.-. +...|..+..+..+.+.++.++.+++++.+. |..|. ...
T Consensus 453 -------------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 453 -------------QLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp -------------HHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred -------------HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 233456699999999988543 6788999999999999999999999999888 88888 679
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhC
Q 005912 616 YDEIISLCLDLGELDAAVAIVADMETTG 643 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
|..+..+|...|++++|+.++..+.+.+
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998876
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=212.59 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=129.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEA---AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 77 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~---~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay 77 (670)
||++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|. ..|+.||++|||+||+||
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~--~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK--DAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHH
Confidence 58999999999999999988874 5899999999999999999999999999999999 899999999999999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
|+.|. ..++|.++|++|.+ .|+.||.+||+++|.++.+.+-++.+.+++..+.-...++... .+.+.|.
T Consensus 211 cK~G~--~~e~A~~Ll~EM~~--kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~-------~t~~LL~ 279 (1134)
T 3spa_A 211 GRQDQ--DAGTIERCLEQMSQ--EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV-------NTSKLLR 279 (1134)
T ss_dssp HHHTC--CHHHHHHHHHHHHH--HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCC-------CCCTTTH
T ss_pred HhCCC--cHHHHHHHHHHHHH--cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccc-------cchHHHH
Confidence 99993 25789999999999 9999999999999988877655544444322111100000111 1666788
Q ss_pred HHHHHcCC---------HHHHHHHHHH
Q 005912 158 RALCREGR---------IIELLEALEA 175 (670)
Q Consensus 158 ~ay~k~G~---------~eeA~~vf~~ 175 (670)
+.|.+.+. .++-..+|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 88887762 4666666663
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.6e-19 Score=205.47 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchh-CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~-~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
-..|||+||++||++|++++|..+|++|.. +..|+.||++|||+||+|||+.| ++++|+++|++|.+ .|+.||.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G---~~~eA~~Lf~eM~~--~G~~PDv 200 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG---AFKELVYVLFMVKD--AGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--TTCCCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCcH
Confidence 457999999999999999999999988762 13589999999999999999999 89999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCA-VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~-~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
+|||+||.+||+.|+ .+.|.++|++|.+.|+.|+.+ +||++|+++.+.+-++.+.+++.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--------tY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--------FTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--------HHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--------hcccccChhhHHHHHHHHHHhCc
Confidence 999999999999998 578999999999999988888 99999999888866655555533
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.53 E-value=1.6e-11 Score=132.67 Aligned_cols=290 Identities=10% Similarity=-0.024 Sum_probs=217.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...|.+.|++++|+.+|+++... ...+..+|+.+..+|.+.|++++|...|+++.. .+ ..+..+|+.+...|.+.|
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LK-MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCcHHHHHHHHHHHHHcC
Confidence 35688999999999999999875 345789999999999999999999999999873 21 345889999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLV------------ECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL------------~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+.++|+..|.++.. +.|+. .++..+. ..|.+.|++++|..+|..+...... .
T Consensus 109 ---~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~---- 176 (450)
T 2y4t_A 109 ---KLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-D---- 176 (450)
T ss_dssp ---CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-C----
T ss_pred ---CHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C----
Confidence 88999999999976 45654 4555554 3488999999999999999875321 1
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+++.+..+|.+.|++++|..+|+.+.+.+. .+.. ++..+... +...
T Consensus 177 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~----~~~~l~~~---------------------~~~~ 224 (450)
T 2y4t_A 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKN---DNTE----AFYKISTL---------------------YYQL 224 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---SCHH----HHHHHHHH---------------------HHHT
T ss_pred ----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHH---------------------HHHc
Confidence 22799999999999999999999999887642 2221 24444333 3667
Q ss_pred CcHHHHHHHHHHhccCCCCCCcccchhhhhH---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHH---
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVGFIYSNPM---------ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSES--- 293 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI---------e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~--- 293 (670)
|..++|..+|+.+... .|+. ......+ ..+...|.+.|++++|..+|..+....-. +..
T Consensus 225 g~~~~A~~~~~~~~~~--~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~ 295 (450)
T 2y4t_A 225 GDHELSLSEVRECLKL--DQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----IAEYTV 295 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----SHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----chHHHH
Confidence 8999999999988643 3543 2221111 11257889999999999999999874321 211
Q ss_pred -HHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 294 -DYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 294 -~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+-..+ ...|.+++|..+++++....-....+|..+..+|...|++++|...
T Consensus 296 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 296 RSKERICHCF-------------SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHH-------------HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222222222 2567899999999998876433447899999999999999998743
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=4.6e-11 Score=127.20 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=225.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
..+.+.|++++|..+++..... .+.+..+|+.+...|.+.|++++|...|+++.. +.|+ ..+|+.+..+|.+.|
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g 115 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR----LKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcC
Confidence 4567889999999999887764 456788999999999999999999999999873 2454 568999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+..|.++.+ +.|+. .++..+-..|...|++++|.++|..+.+..+.. . .+|+.+...|
T Consensus 116 ---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~--------~~~~~l~~~~ 179 (388)
T 1w3b_A 116 ---DMEGAVQAYVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-A--------VAWSNLGCVF 179 (388)
T ss_dssp ---CSSHHHHHHHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-H--------HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-H--------HHHHHHHHHH
Confidence 67799999999987 34654 556777788888999999999999998753221 1 2899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHH---------HHHHHHHHHHcCC-CHH---HHHHHHHcCCc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS---------WIEPLQEEAELGY-EID---YIARYISEGGL 227 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a---------~~~ll~~m~~~G~-~pd---~i~~~~~~~g~ 227 (670)
.+.|++++|...|+++.+.+ |+... .+..+... +...+.......- .+. .+...+...|.
T Consensus 180 ~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD----PNFLD---AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999998864 33221 23333222 2233333333221 122 23355677889
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccC
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIK 307 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~ 307 (670)
.++|...|+.+... .|+. ..+|+.+. ..|.+.|++++|..+|+.+....- .+...+..+...+.
T Consensus 253 ~~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~---- 316 (388)
T 1w3b_A 253 IDLAIDTYRRAIEL--QPHF-PDAYCNLA----NALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKR---- 316 (388)
T ss_dssp HHHHHHHHHHHHHT--CSSC-HHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhh--CCCC-HHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHH----
Confidence 99999999988764 2432 13454444 788999999999999999987632 24455554444443
Q ss_pred CCcccccccccCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCChhhhhcC
Q 005912 308 GPEQHVLKPKAASKMVVSELKEELDAQGLPT-DGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 308 ~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~-d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|..+++++.+.. |+ ..++..+...+.+.|++++|...
T Consensus 317 ---------~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 317 ---------EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp ---------TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ---------HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567999999999998753 44 37889999999999999988743
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=7.5e-11 Score=125.52 Aligned_cols=307 Identities=14% Similarity=0.070 Sum_probs=227.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|+.+|..+.... +.+...+..+-..|.+.|++++|..+++.... ....+..+|+.+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~---~~p~~~~~~~~lg~~~~~~g- 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---QNPLLAEAYSNLGNVYKERG- 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCC-
Confidence 45778999999999999887642 33456667777888999999999999988773 22457889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.++.. +.|+ ..+|..+..+|.+.|++++|.+.|..+.+..+. . +..++.+-..|.
T Consensus 82 --~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~l~~~~~ 146 (388)
T 1w3b_A 82 --QLQEAIEHYRHALR----LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--L-------YCVRSDLGNLLK 146 (388)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--C-------THHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-------HHHHHHHHHHHH
Confidence 89999999999987 3465 567999999999999999999999999875322 1 116788888999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHH---------HHHHHHHHHHHHcCCC-HHH---HHHHHHcCCcH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV---------SSWIEPLQEEAELGYE-IDY---IARYISEGGLT 228 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll---------~a~~~ll~~m~~~G~~-pd~---i~~~~~~~g~~ 228 (670)
+.|++++|..+|+.+.+.. |+... +|..+. ..+...+..+....-. ++. +...+...|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ----PNFAV---AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HccCHHHHHHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999998764 32221 233332 3344556655554322 222 22456677888
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
++|...|+..... .|+. ..++..+. ..|.+.|++++|+..|+.+....-. +...+..+-..+.
T Consensus 220 ~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~----- 282 (388)
T 1w3b_A 220 DRAVAAYLRALSL--SPNH-AVVHGNLA----CVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALK----- 282 (388)
T ss_dssp THHHHHHHHHHHH--CTTC-HHHHHHHH----HHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhh--CcCC-HHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH-----
Confidence 8898888877543 2442 24454444 7889999999999999999876432 3444555444444
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|..+|+++.+..-.+..+++.+...+...|++++|...
T Consensus 283 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 283 --------EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp --------HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456699999999999876533447899999999999999988643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=5.5e-10 Score=120.56 Aligned_cols=285 Identities=12% Similarity=-0.001 Sum_probs=206.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHH-
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQA- 76 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~a- 76 (670)
..+|.+.|++++|+..|+++.+.+ ..+..+|+.+...|.+.|++++|..+|+++.. ..|+. .+|+.++..
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHH
Confidence 357889999999999999998764 34688999999999999999999999999982 24543 677777555
Q ss_pred -----------HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 77 -----------YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 77 -----------y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|.+.| +.++|+.+|.++.. . ...+..++..+..+|.+.|++++|.++|..+.+.....
T Consensus 142 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 210 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSG---DYTAAIAFLDKILE--V-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----- 210 (450)
T ss_dssp HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-----
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 88889 78999999999987 2 23467889999999999999999999999998753221
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+|+.+...|.+.|++++|...|+.+.+.. |+... .+.. +..+... ... ......+.+.
T Consensus 211 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~---~~~~-~~~~~~~-~~~-------~~~~~~~~~~ 270 (450)
T 2y4t_A 211 ----TEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKR---CFAH-YKQVKKL-NKL-------IESAEELIRD 270 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH---HHHH-HHHHHHH-HHH-------HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CChHH---HHHH-HHHHHHH-HHH-------HHHHHHHHHc
Confidence 2289999999999999999999999998654 33221 1111 1111000 000 0123446677
Q ss_pred CcHHHHHHHHHHhccCCCCCCccc---chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHH
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVG---FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERL 302 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~---~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l 302 (670)
|..++|..+|+.+... .|+... ..|. .+...+.+.|+.++|+.+++.+....- .+...+..+-..+
T Consensus 271 g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 271 GRYTDATSKYESVMKT--EPSIAEYTVRSKE----RICHCFSKDEKPVEAIRVCSEVLQMEP-----DNVNALKDRAEAY 339 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHHHHHH----HHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHH
Confidence 8999999999998763 344211 1333 345889999999999999999876532 2444555554555
Q ss_pred HHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHH
Q 005912 303 KKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQ 347 (670)
Q Consensus 303 ~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~ 347 (670)
. ..|++++|...+++..+.. |.+ ..+..+-.
T Consensus 340 ~-------------~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 371 (450)
T 2y4t_A 340 L-------------IEEMYDEAIQDYETAQEHN-ENDQQIREGLEK 371 (450)
T ss_dssp H-------------HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHH
T ss_pred H-------------HhcCHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4 4566999999999998843 544 45554443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.28 E-value=2.4e-08 Score=103.16 Aligned_cols=294 Identities=11% Similarity=-0.012 Sum_probs=211.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|++..... +.+..+|..+-..|...|++++|...|++... . ..-+...|..+-..|.+.|
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~- 85 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--L-KMDFTAARLQRGHLLLKQG- 85 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCcchHHHHHHHHHHHcC-
Confidence 46788999999999999988752 34688999999999999999999999999873 1 1236789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC---C-HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP---N-VKTYALL------------VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P---d-~~Ty~~L------------L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.+... +.| + ...+..+ ...+...|++++|..+|..+.+....
T Consensus 86 --~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 152 (359)
T 3ieg_A 86 --KLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------- 152 (359)
T ss_dssp --CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred --ChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Confidence 88999999999976 456 3 3444444 47888999999999999999875322
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.++..+...|.+.|++++|...|+...+.. |+... .+..+... +...|
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~la~~---------------------~~~~~ 202 (359)
T 3ieg_A 153 --DAELRELRAECFIKEGEPRKAISDLKAASKLK----SDNTE---AFYKISTL---------------------YYQLG 202 (359)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----SCCHH---HHHHHHHH---------------------HHHHT
T ss_pred --chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHH---HHHHHHHH---------------------HHHcC
Confidence 12278999999999999999999999998764 22211 23333322 24557
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPM--------ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI--------e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
..++|...|+..... .|+.. .++..+. -.....+.+.|+.++|..+|.......-. +......+
T Consensus 203 ~~~~A~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~ 274 (359)
T 3ieg_A 203 DHELSLSEVRECLKL--DQDHK-RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----VAEYTVRS 274 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--Cccch-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHH
Confidence 888898888887653 23321 1121110 01246688999999999999998875422 22222222
Q ss_pred HHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 299 EERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 299 l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
...+... ....|..++|..+++......-.+..++..+-..+...|++++|...
T Consensus 275 ~~~la~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 275 KERICHC---------FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp HHHHHHH---------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH---------HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111 02567799999999999876433447888899999999999998754
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.21 E-value=7.3e-09 Score=113.25 Aligned_cols=340 Identities=8% Similarity=-0.046 Sum_probs=195.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|+++.... |+..+|..+..+|.+.|++++|...|+++.. .. ..+..+|..+..+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g- 87 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LK-PDYSKVLLRRASANEGLG- 87 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-SCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cC-hHHHHHHHHHHHHHHHHh-
Confidence 35788999999999999999865 8999999999999999999999999999873 21 345678999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCC----------------------------------------------------------
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQ---------------------------------------------------------- 104 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~---------------------------------------------------------- 104 (670)
+.++|+..|.++.. .+-.
T Consensus 88 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 88 --KFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp --CHHHHHHHHHHHHH--SSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred --hHHHHHHHHHHHHh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 78899999988866 2210
Q ss_pred -------------------CC-HHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----ccCCCcccccCCCCchHHHHH
Q 005912 105 -------------------PN-VKTYALLVECFT---KYCAVTEAIRHFRALQN-----YEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 105 -------------------Pd-~~Ty~~LL~a~a---k~g~~d~A~~lf~~M~~-----~g~~~~v~~~~g~~pdtyn~L 156 (670)
|+ ...+..+..++. +.|++++|..+|..+.+ ....|.-.......+.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11 222222222223 27888888888888776 211111000000001167777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH-HHhHHH--HHHHHHHHHHHHHHHcCC-CHHH---HHHHHHcCCcHH
Q 005912 157 LRALCREGRIIELLEALEAMAKDNQPVPPRAMI-LSRKYR--TLVSSWIEPLQEEAELGY-EIDY---IARYISEGGLTG 229 (670)
Q Consensus 157 I~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~~ty~--~ll~a~~~ll~~m~~~G~-~pd~---i~~~~~~~g~~~ 229 (670)
...|.+.|++++|..+|+.+.+.+. .+.... .+..|. +-...+...+.......- .+.. +...+...|..+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 7778888888888888887766542 111110 011110 001122233333332211 1221 223345555666
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-----cC--CCCHHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA-V-----LG--DVSESDYVRVEER 301 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~-~-----~g--~~~~~~~~~~l~~ 301 (670)
+|...|+...... |+. ..++.. +...|.+.|+.++|+.+|..+....-. + .+ +...+.+..++..
T Consensus 322 ~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 322 QAGKDFDKAKELD--PEN-IFPYIQ----LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHHHHHHHHHHTC--SSC-SHHHHH----HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhh-HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666654421 221 122322 225556666666666666666543211 0 00 0000111122222
Q ss_pred HHHccCC-C----------cccccc---cc---cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 302 LKKLIKG-P----------EQHVLK---PK---AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 302 l~k~~~~-p----------~~~~L~---~~---~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+.+.... | .+..+. .. .|.+++|...++......-....++..+...+...|++++|...
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2221110 1 001111 25 78899999999999876533447888899999999999998743
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=6.1e-08 Score=105.84 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..|-.+-..|.+.|++++|...|+++.. . .||..+|..+..+|.+.| +.++|+..|.++.+ .. ..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~--~~-p~~~~~~ 76 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--L--KEDPVFYSNLSACYVSVG---DLKKVVEMSTKALE--LK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--HC-SCCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--c--CccHHHHHhHHHHHHHHh---hHHHHHHHHHHHhc--cC-hHHHHHH
Confidence 4556667788999999999999999984 2 489999999999999999 88999999999987 22 2356789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
..+..+|.+.|++++|...|..+.....
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999887653
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.15 E-value=4.8e-08 Score=99.92 Aligned_cols=284 Identities=7% Similarity=-0.080 Sum_probs=195.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+...|++++|+.+|+++.... ..+...+..+...+.+.|++++|..+|+++.. . -..+...|..+-..|...|+
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD--L-YPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHhhh
Confidence 45677899999999999887653 23455666777888899999999999998873 1 12356788888888888883
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.+... .. ..+..+|..+..+|...|++++|...|....+..... +.++..+...|.+
T Consensus 106 --~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~ 171 (330)
T 3hym_B 106 --KNEHARRYLSKATT--LE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---------HLPMLYIGLEYGL 171 (330)
T ss_dssp --CHHHHHHHHHHHHT--TC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---------SHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHH--hC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHH
Confidence 36788899998876 22 2246778889999999999999999999888753221 1267778889999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT- 241 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~- 241 (670)
.|++++|...|+...+... .+.. .+..+... +...|..++|..+|+.....
T Consensus 172 ~~~~~~A~~~~~~al~~~~---~~~~----~~~~l~~~---------------------~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAP---EDPF----VMHEVGVV---------------------AFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCT---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCC---CChH----HHHHHHHH---------------------HHHcccHHHHHHHHHHHHHHh
Confidence 9999999999998877642 2211 23333322 35677889999888877532
Q ss_pred ---C--CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccc
Q 005912 242 ---P--LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKP 316 (670)
Q Consensus 242 ---g--i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~ 316 (670)
+ ..+.....+|.. +...|.+.|+.++|...|+......-. +...+..+-..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~------------- 281 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNN----LGHVCRKLKKYAEALDYHRQALVLIPQ-----NASTYSAIGYIHS------------- 281 (330)
T ss_dssp TTTSCSCTTTTCCHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHH-------------
T ss_pred hhccccccccHHHHHHHH----HHHHHHHhcCHHHHHHHHHHHHhhCcc-----chHHHHHHHHHHH-------------
Confidence 1 111111134443 447889999999999999998876432 3333444333443
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHH-HHhCCh
Q 005912 317 KAASKMVVSELKEELDAQGLPTD-GTRNVLYQRV-QKARRI 355 (670)
Q Consensus 317 ~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~-~~aG~~ 355 (670)
..|..++|...|++..+.. |.+ ..+..+...+ ...|+.
T Consensus 282 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 4466999999999877644 444 5666666655 344443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.10 E-value=9e-09 Score=107.67 Aligned_cols=296 Identities=10% Similarity=-0.057 Sum_probs=197.3
Q ss_pred HHhcCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 5 DCKAGDHSNALE-IAYEMEAAGR-MA--TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 5 y~k~G~~~~Al~-lf~~M~~~Gv-~P--d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|...|++++|++ .|.+.....- .| +...+..+-..|.+.|++++|..+|+++.. . -..+..+|..+..+|.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--Q-DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHC
Confidence 445567777776 6664332210 11 345677888999999999999999999983 2 134778999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC------CCch-HH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG------NFGD-PL 153 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g------~~pd-ty 153 (670)
| +.++|+..|.+... .. ..+..+|..+..+|...|++++|...|..+.............. ..+. .+
T Consensus 112 g---~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 112 E---QELLAISALRRCLE--LK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp T---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred c---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 9 78999999999987 22 33678999999999999999999999999987654322111000 0000 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 154 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 154 n~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
+ .+..+.+.|++++|..+|+.+.+.... .++.. .+..+... +...|..++|..
T Consensus 186 ~-~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~----~~~~l~~~---------------------~~~~g~~~~A~~ 238 (368)
T 1fch_A 186 R-ILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPD----VQCGLGVL---------------------FNLSGEYDKAVD 238 (368)
T ss_dssp C-TTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHH----HHHHHHHH---------------------HHHTTCHHHHHH
T ss_pred H-HHHHHhhcccHHHHHHHHHHHHHhCcC-cccHH----HHHHHHHH---------------------HHHcCCHHHHHH
Confidence 1 244445899999999999999876521 11222 23333333 366789999999
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccc
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHV 313 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~ 313 (670)
+|+..... .|+. ..+|..+ ...|.+.|+.++|+.+|+......-. +...+..+-..+.
T Consensus 239 ~~~~al~~--~~~~-~~~~~~l----~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~---------- 296 (368)
T 1fch_A 239 CFTAALSV--RPND-YLLWNKL----GATLANGNQSEEAVAAYRRALELQPG-----YIRSRYNLGISCI---------- 296 (368)
T ss_dssp HHHHHHHH--CTTC-HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH----------
T ss_pred HHHHHHHh--CcCC-HHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHH----------
Confidence 99887653 2432 2345444 47889999999999999998765322 3444444444444
Q ss_pred cccccCCHHHHHHHHHHHHhCCCCC-----------HHHHHHHHHHHHHhCChhhhhcC
Q 005912 314 LKPKAASKMVVSELKEELDAQGLPT-----------DGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 314 L~~~~g~~~~A~~l~~~M~~~Gip~-----------d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|.+++|...|++.....-.. ..+|..+..++...|+.++|..+
T Consensus 297 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 297 ---NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ---HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 4566999999998886533211 47899999999999999998754
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.08 E-value=4.1e-07 Score=93.74 Aligned_cols=289 Identities=13% Similarity=0.030 Sum_probs=202.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC----CHHHHHHH-----
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP----DTETYNCV----- 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P----d~~tyn~L----- 73 (670)
..|...|++++|+..|++..+.. .-+...|..+-..|.+.|++++|...|++... +.| +...|..+
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHH
Confidence 46788999999999999988752 23678899999999999999999999999872 245 44555554
Q ss_pred -------HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 74 -------IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 74 -------I~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
...+...| +.++|+.+|.+.... ...+..++..+..+|...|++++|...+..+.+....
T Consensus 120 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------- 186 (359)
T 3ieg_A 120 MQRLRSQALDAFDGA---DYTAAITFLDKILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD------- 186 (359)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-------
T ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------
Confidence 47888899 789999999999872 2346788999999999999999999999998875321
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.+|..+...|.+.|++++|...|+...+.... .+... ..+..+ ......+ .....+...|
T Consensus 187 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~---~~~~~~-~~~~~~~-----------~~a~~~~~~~ 248 (359)
T 3ieg_A 187 --NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCF---AHYKQV-KKLNKLI-----------ESAEELIRDG 248 (359)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH---HHHHHH-HHHHHHH-----------HHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHH---HHHHHH-HHHHHHH-----------HHHHHHHHcC
Confidence 1238999999999999999999999998876421 11111 011111 1000000 0123356678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHcc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLI 306 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~ 306 (670)
..++|...++...... |+.. ..+......+...|.+.|+.++|+.+|+......-. +...+..+-..+.
T Consensus 249 ~~~~A~~~~~~~~~~~--~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~--- 317 (359)
T 3ieg_A 249 RYTDATSKYESVMKTE--PSVA-EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-----NVNALKDRAEAYL--- 317 (359)
T ss_dssp CHHHHHHHHHHHHHHC--CSSH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhcC--CCch-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHH---
Confidence 8999999998876532 4421 222222223557889999999999999998875321 3444444334443
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHH
Q 005912 307 KGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRV 349 (670)
Q Consensus 307 ~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~ 349 (670)
..|.+++|...|++..+.. |.. ..+..|..+.
T Consensus 318 ----------~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 318 ----------IEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp ----------HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred ----------HcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4567999999999998765 433 4555554443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.08 E-value=6.9e-08 Score=98.73 Aligned_cols=270 Identities=9% Similarity=-0.063 Sum_probs=195.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
...+...+..+...|...|++++|..+|+++.. . -..+...+..++.++.+.| +.++|+.+|.++... . .-
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~-~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~--~-~~ 88 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVME--K-DPFHASCLPVHIGTLVELN---KANELFYLSHKLVDL--Y-PS 88 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCTTTHHHHHHHHHHHT---CHHHHHHHHHHHHHH--C-TT
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCCChhhHHHHHHHHHHhh---hHHHHHHHHHHHHHh--C-cC
Confidence 445666778888999999999999999999873 1 1234566777888999999 889999999999872 1 23
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 106 NVKTYALLVECFTKYC-AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g-~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
+..+|..+...|...| ++++|.+.|......... .+.+|..+...|...|++++|...|+...+.... .
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 158 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-C 158 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-C
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-c
Confidence 5678888999999999 999999999998875321 1238999999999999999999999998876521 1
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHH
Q 005912 185 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 264 (670)
Q Consensus 185 p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~ 264 (670)
+.. +..+.. .+...|..++|..+|+...... |+. ..++.. +...|.
T Consensus 159 ~~~------~~~l~~---------------------~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~----l~~~~~ 204 (330)
T 3hym_B 159 HLP------MLYIGL---------------------EYGLTNNSKLAERFFSQALSIA--PED-PFVMHE----VGVVAF 204 (330)
T ss_dssp SHH------HHHHHH---------------------HHHHTTCHHHHHHHHHHHHTTC--TTC-HHHHHH----HHHHHH
T ss_pred HHH------HHHHHH---------------------HHHHHhhHHHHHHHHHHHHHhC--CCC-hHHHHH----HHHHHH
Confidence 211 222222 2366788999999999887642 432 234433 447889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc---cC-CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHH
Q 005912 265 LEDGKKYHRKLLRTLQNEGPAV---LG-DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDG 340 (670)
Q Consensus 265 ~~G~~e~A~~Lf~~M~~~gv~~---~g-~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~ 340 (670)
+.|+.++|..+|+......-.. .. ......+..+-..+. ..|.+++|...+++.....-....
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-------------~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-------------KLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-------------HhcCHHHHHHHHHHHHhhCccchH
Confidence 9999999999999887642110 00 012233333333333 456799999999999876533347
Q ss_pred HHHHHHHHHHHhCChhhhhcC
Q 005912 341 TRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 341 t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+-..+.+.|++++|...
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHH
Confidence 888899999999999988643
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=1.6e-08 Score=104.79 Aligned_cols=276 Identities=8% Similarity=0.083 Sum_probs=193.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
|+-.-..|++..|+..++.... ..|+. ...-.+..+|...|+++.|...|+... .|+..++..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~------~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS------APELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC------ChhHHHHHHHHHHHcC
Confidence 3445678999999998876543 33443 344667789999999999998775543 6788999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
.| +.++|++.|+++.. .++.|+. ..+..+-.+|...|++++|.+.++. +.+. +++..+..
T Consensus 78 ~~---~~~~A~~~l~~ll~--~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~--------~~~~~l~~ 138 (291)
T 3mkr_A 78 HS---RRDAIVAELDREMS--RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSL--------ECMAMTVQ 138 (291)
T ss_dssp ST---THHHHHHHHHHHHH--SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSH--------HHHHHHHH
T ss_pred CC---cHHHHHHHHHHHHh--cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCH--------HHHHHHHH
Confidence 99 78999999999988 6666764 4455566889999999999999986 2222 28899999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.|.+.|++++|...|+.+.+.+ |+.. ...+..++. ..+...|..++|..+|+.+
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~----p~~~-----~~~l~~a~~-----------------~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD----EDAT-----LTQLATAWV-----------------SLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCH-----HHHHHHHHH-----------------HHHHCTTHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC----cCcH-----HHHHHHHHH-----------------HHHhCchHHHHHHHHHHHH
Confidence 9999999999999999998864 3332 122222221 1124568899999999998
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccccc
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKA 318 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~ 318 (670)
... .|+. ...|+.+ ...|.+.|++++|+..|++.....-. +...+..+...+...
T Consensus 193 l~~--~p~~-~~~~~~l----a~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~l~~l~~~~~~~------------- 247 (291)
T 3mkr_A 193 ADK--CSPT-LLLLNGQ----AACHMAQGRWEAAEGVLQEALDKDSG-----HPETLINLVVLSQHL------------- 247 (291)
T ss_dssp HHH--SCCC-HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHT-------------
T ss_pred HHh--CCCc-HHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc-------------
Confidence 764 2432 2445444 37889999999999999998765432 455555555444443
Q ss_pred CCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhh
Q 005912 319 ASKMV-VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 319 g~~~~-A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
|+..+ +.++++++.+.. |.+.. +.....+.+.++++.
T Consensus 248 g~~~eaa~~~~~~~~~~~-P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 248 GKPPEVTNRYLSQLKDAH-RSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp TCCHHHHHHHHHHHHHHC-TTCHH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCChH---HHHHHHHHHHHHHHH
Confidence 33544 567888887654 33321 223344555555543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.04 E-value=2.3e-08 Score=104.59 Aligned_cols=227 Identities=11% Similarity=-0.011 Sum_probs=171.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|+++.+.. ..+..+|..+...|.+.|++++|...|++... .. ..+..+|..+...|...|
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g- 146 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE--LK-PDNQTALMALAVSFTNES- 146 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHcC-
Confidence 46788999999999999999763 44788899999999999999999999999873 21 347889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHH-HHHH---------------HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVK-TYAL---------------LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~---------------LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.++.. . .|+.. .+.. .+..+...|++++|..+|..+.+......
T Consensus 147 --~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----- 215 (368)
T 1fch_A 147 --LQRQACEILRDWLR--Y--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI----- 215 (368)
T ss_dssp --CHHHHHHHHHHHHH--T--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC-----
T ss_pred --CHHHHHHHHHHHHH--h--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc-----
Confidence 88999999999987 2 23322 2211 24444599999999999999987543210
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.+|+.+...|.+.|++++|...|+...+... .+.. .+..+... +...|
T Consensus 216 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~----~~~~l~~~---------------------~~~~g 265 (368)
T 1fch_A 216 --DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYL----LWNKLGAT---------------------LANGN 265 (368)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTT
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHH----HHHHHHHH---------------------HHHcC
Confidence 122899999999999999999999999877642 2221 23333333 36678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..++|..+|+..... .|+. ..+|.. +...|.+.|+.++|...|+.....
T Consensus 266 ~~~~A~~~~~~al~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 266 QSEEAVAAYRRALEL--QPGY-IRSRYN----LGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp CHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCc-HHHHHH----HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999987653 2432 134433 448889999999999999988754
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.03 E-value=1.1e-08 Score=107.49 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=167.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|+++.... ..+..+|+.+...|.+.|++++|...|++... .. ..+..+|+.+...|.+.|
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g- 147 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQ-PNNLKALMALAVSYTNTS- 147 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHccc-
Confidence 46788999999999999998753 34788999999999999999999999999873 11 345889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-----------VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-----------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
+.++|+..|.++.. +.|+ ..++..+...|.+.|++++|..+|..+.+..... ..+.
T Consensus 148 --~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 214 (365)
T 4eqf_A 148 --HQQDACEALKNWIK----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-------IDPD 214 (365)
T ss_dssp --CHHHHHHHHHHHHH----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-------CCHH
T ss_pred --cHHHHHHHHHHHHH----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-------cCHH
Confidence 78899999999876 2233 2334456788999999999999999998854321 0233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
+|+.+...|.+.|++++|...|+...+... .+.. .+..+...+ ...|..++|
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~----~~~~l~~~~---------------------~~~g~~~~A 266 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYS----LWNRLGATL---------------------ANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHHH---------------------HHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHHH---------------------HHcCCHHHH
Confidence 899999999999999999999999887642 2221 244444333 667899999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
...|+..... .|+. ..+|..+ ...|.+.|+.++|...|+.....
T Consensus 267 ~~~~~~al~~--~p~~-~~~~~~l----~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 267 VEAYTRALEI--QPGF-IRSRYNL----GISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHHH----HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCc-hHHHHHH----HHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988653 2442 2444434 47889999999999999988754
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.02 E-value=1.4e-07 Score=103.92 Aligned_cols=245 Identities=9% Similarity=-0.027 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhHhccCCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPN--------VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd--------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
.++|+.+|.++.. ..|+ ..+|..+-..+...|++++|...|....+.... +.+|..+-
T Consensus 218 ~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~l~ 283 (537)
T 3fp2_A 218 LTKSTDMYHSLLS----ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----------PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----------chHHHHHH
Confidence 3445555555544 2343 446777778888999999999999998875322 22788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH---------HHHHHHHHHHHHHcCC-CHHH---HHHHHHc
Q 005912 158 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL---------VSSWIEPLQEEAELGY-EIDY---IARYISE 224 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l---------l~a~~~ll~~m~~~G~-~pd~---i~~~~~~ 224 (670)
..|.+.|++++|...|+...+.... .+.. +..+ ...+...+....+..- .+.. +...+..
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPE-YPPT------YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTT-CHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCC-CHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8899999999999999988776421 1211 2222 2333344554444322 1222 3355667
Q ss_pred CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccCCCCHHHHHHHHHHHH
Q 005912 225 GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA-VLGDVSESDYVRVEERLK 303 (670)
Q Consensus 225 ~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~-~~g~~~~~~~~~~l~~l~ 303 (670)
.|..++|..+|+...... |+. ..+|.. +...|.+.|+.++|...|+......-. +......+.+...-..+.
T Consensus 357 ~g~~~~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKF--PTL-PEVPTF----FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTC-THHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCC-hHHHHH----HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 788999999988876532 332 133433 347778899999999999887654211 000112222222112222
Q ss_pred HccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 304 KLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 304 k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.... ... ..-..|.+++|..+|++.....-.+...+..+...+...|+.++|...
T Consensus 430 ~~~~--~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 430 RQSS--QDP-TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHT--C-----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhh--ccc-hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2100 000 000116789999999999876533447888899999999999998754
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.01 E-value=1e-09 Score=120.05 Aligned_cols=280 Identities=11% Similarity=-0.005 Sum_probs=92.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
+.|++++|.++++++.. ..+|..|..++.+.|++++|.+.|.+ .+|..+|..++.++.+.| +.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik--------a~D~~~y~~V~~~ae~~g---~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK--------ADDPSSYMEVVQAANTSG---NW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc--------CCCHHHHHHHHHHHHhCC---CH
Confidence 44666777777766632 24667777777777777777777743 245556777777777666 55
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
++|.+.+...++ . .++..+.+.|+.+|++.|++.++.++++. |+.. +|+.+-+.|...|++
T Consensus 78 EeAi~yl~~ark---~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~--------a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 78 EELVKYLQMARK---K-ARESYVETELIFALAKTNRLAELEEFING-------PNNA--------HIQQVGDRCYDEKMY 138 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC-------C------------------------CT
T ss_pred HHHHHHHHHHHH---h-CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHH--------HHHHHHHHHHHcCCH
Confidence 566664444333 1 34456666677777777777666665531 1111 555666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI---DYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~p---d~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
++|...|..+. .+..+...+..-+-..++++.+... + .| ..+...|...|..+.|......+.
T Consensus 139 eeA~~~Y~~a~------n~~~LA~~L~~Lg~yq~AVea~~KA---~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---- 204 (449)
T 1b89_A 139 DAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA---N-STRTWKEVCFACVDGKEFRLAQMCGLHIV---- 204 (449)
T ss_dssp TTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH---T-CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----
T ss_pred HHHHHHHHHhh------hHHHHHHHHHHhccHHHHHHHHHHc---C-CchhHHHHHHHHHHcCcHHHHHHHHHHHH----
Confidence 66666666440 1111111111111112222222222 1 23 233455677888888855444322
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
..+++ +..++..|.+.|++++|..+|+.-.... + ...+.++.+-..+.+- +.+..++
T Consensus 205 -~~ad~------l~~lv~~Yek~G~~eEai~lLe~aL~le-~----ah~~~ftel~il~~ky-----------~p~k~~e 261 (449)
T 1b89_A 205 -VHADE------LEELINYYQDRGYFEELITMLEAALGLE-R----AHMGMFTELAILYSKF-----------KPQKMRE 261 (449)
T ss_dssp -TCHHH------HHHHHHHHHHTTCHHHHHHHHHHHTTST-T----CCHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred -hCHhh------HHHHHHHHHHCCCHHHHHHHHHHHhCCc-H----HHHHHHHHHHHHHHhc-----------CHHHHHH
Confidence 22322 2345688999999999999998876444 2 4566666654444442 3344555
Q ss_pred HHHHHHHHHhCCCCC-----H--HHHHHHHHHHHHhCChhhhhcC
Q 005912 324 VSELKEELDAQGLPT-----D--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 324 A~~l~~~M~~~Gip~-----d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..++|. .+-.+|+ . ..|.-++..|.+.+.++.|...
T Consensus 262 hl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555554 2333455 2 4677788888889999888653
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.98 E-value=5.2e-08 Score=99.53 Aligned_cols=225 Identities=11% Similarity=-0.038 Sum_probs=167.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|+.+|+++.... ..+...|..+...|.+.|++++|...|+++.. . ...+..+|..+...|...|
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~~~~~~~- 103 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--L-DPKDIAVHAALAVSHTNEH- 103 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CcCCHHHHHHHHHHHHHcC-
Confidence 35778999999999999988753 34778899999999999999999999999873 1 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHH-HHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVK-TYALL--------------VE-CFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~L--------------L~-a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.+... . .|+.. .+..+ .. .+...|++++|..++..+.+.... +
T Consensus 104 --~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~----- 171 (327)
T 3cv0_A 104 --NANAALASLRAWLL--S--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D----- 171 (327)
T ss_dssp --CHHHHHHHHHHHHH--T--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C-----
T ss_pred --CHHHHHHHHHHHHH--h--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C-----
Confidence 78899999999887 2 23322 22222 11 377889999999999998875322 1
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
+.++..+...|.+.|++++|...|+...+... .+.. .+..+... +...|
T Consensus 172 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~----~~~~l~~~---------------------~~~~~ 220 (327)
T 3cv0_A 172 ---AQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQ----LWNKLGAT---------------------LANGN 220 (327)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTT
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHH----HHHHHHHH---------------------HHHcC
Confidence 22789999999999999999999999877642 2221 23333322 36678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..++|..+|+..... .|+. ..+|.. +...|.+.|+.++|...|+.....
T Consensus 221 ~~~~A~~~~~~a~~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 221 RPQEALDAYNRALDI--NPGY-VRVMYN----MAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp CHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCC-HHHHHH----HHHHHHHhccHHHHHHHHHHHHHh
Confidence 899999999887653 2332 134433 447889999999999999988754
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.95 E-value=4.4e-08 Score=102.91 Aligned_cols=271 Identities=10% Similarity=-0.060 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...|..+-..|.+.|++++|..+|+++.. . -..+..+|+.+...|.+.| +.++|+..|.+... +.| +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~ 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--Q-DPGDAEAWQFLGITQAENE---NEQAAIVALQRCLE----LQPNNL 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh----cCCCCH
Confidence 344578888999999999999999999873 1 1346889999999999999 88999999999987 234 57
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK-VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~-v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
.+|..+..+|.+.|++++|..+|..+.+...... .....+..+..++.+...|.+.|++++|..+|+++.+.+.. ..+
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 212 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-MID 212 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-ccC
Confidence 8999999999999999999999999987432111 11000011125566788999999999999999999886521 112
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhc
Q 005912 187 AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 187 ~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~ 266 (670)
.. .+..+... +...|..++|..+|+..... .|+. ..+|+.+. ..|.+.
T Consensus 213 ~~----~~~~l~~~---------------------~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~ 260 (365)
T 4eqf_A 213 PD----LQTGLGVL---------------------FHLSGEFNRAIDAFNAALTV--RPED-YSLWNRLG----ATLANG 260 (365)
T ss_dssp HH----HHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--CTTC-HHHHHHHH----HHHHHT
T ss_pred HH----HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHHh--CCCC-HHHHHHHH----HHHHHc
Confidence 22 23333332 35567899999999887653 2332 24555444 788999
Q ss_pred CCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC----C-----
Q 005912 267 DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL----P----- 337 (670)
Q Consensus 267 G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi----p----- 337 (670)
|+.++|+..|+......-. +...+..+-..+. ..|++++|...|++.....- +
T Consensus 261 g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEIQPG-----FIRSRYNLGISCI-------------NLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-------------HHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 9999999999998876322 3444444444444 34568899999988865321 1
Q ss_pred ---CHHHHHHHHHHHHHhCChhhhhc
Q 005912 338 ---TDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 338 ---~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
....|..|-.++...|+.+.+..
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 23678889999999999887764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.91 E-value=4.8e-08 Score=101.21 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=163.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA 80 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~ 80 (670)
..+|...|+++.|+..++. .-.|+..++..+...|.+.|+.++|...|+++. ..++.|+ ...+..+-..|.+.
T Consensus 41 ~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll--~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREM--SRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH--HSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH--hcccCCCCHHHHHHHHHHHHHC
Confidence 4678899999999987754 245678899999999999999999999999987 4555565 44555556889999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|++.|.+ ..+..++..+...|.+.|++++|.+.|+.+.+........ ....+++..+
T Consensus 115 g---~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-------~l~~a~~~l~ 176 (291)
T 3mkr_A 115 Q---NPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT-------QLATAWVSLA 176 (291)
T ss_dssp T---CHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHH
T ss_pred C---CHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH-------HHHHHHHHHH
Confidence 9 88999999875 3577899999999999999999999999998754211000 0123344555
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...|++++|..+|+++.+.. +.+.. .++.+...+ .+.|..++|...|+....
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~---p~~~~----~~~~la~~~---------------------~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKC---SPTLL----LLNGQAACH---------------------MAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHS---CCCHH----HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhC---CCcHH----HHHHHHHHH---------------------HHcCCHHHHHHHHHHHHH
Confidence 55699999999999998874 23332 244444433 677899999999998765
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 005912 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKY-HRKLLRTLQNEG 283 (670)
Q Consensus 241 ~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~-A~~Lf~~M~~~g 283 (670)
. .|+. .-++..+. ..+...|+..+ +.++++.+....
T Consensus 229 ~--~p~~-~~~l~~l~----~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 K--DSGH-PETLINLV----VLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp H--CTTC-HHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred h--CCCC-HHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3 2432 13455454 56677888765 678998877554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.90 E-value=3e-07 Score=93.76 Aligned_cols=261 Identities=10% Similarity=-0.084 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..+-.+-..|.+.|++++|..+|+++.. . ...+..+|..+...|.+.| +.++|+..|.+... . -..+..+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~--~-~~~~~~~~ 92 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--A-APEREEAWRSLGLTQAENE---KDGLAIIALNHARM--L-DPKDIAVH 92 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--c-CcCCHHHH
Confidence 3456677788999999999999999873 1 1347889999999999999 78899999999987 2 22367889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH--------------HH-HHHHcCCHHHHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY--------------LR-ALCREGRIIELLEALEA 175 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L--------------I~-ay~k~G~~eeA~~vf~~ 175 (670)
..+...|...|++++|.+.+..+......... .+..+ -. .|...|++++|..+|+.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999875432211 22222 22 37788999999999999
Q ss_pred HhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhh
Q 005912 176 MAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNP 255 (670)
Q Consensus 176 M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~L 255 (670)
+.+... .+.. .+..+... +...|..++|..+++..... .|+. ..+|..
T Consensus 164 ~~~~~~---~~~~----~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~- 211 (327)
T 3cv0_A 164 ALEMNP---NDAQ----LHASLGVL---------------------YNLSNNYDSAAANLRRAVEL--RPDD-AQLWNK- 211 (327)
T ss_dssp HHHHST---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH--CTTC-HHHHHH-
T ss_pred HHhhCC---CCHH----HHHHHHHH---------------------HHHhccHHHHHHHHHHHHHh--CCCc-HHHHHH-
Confidence 887652 2221 23333322 36678899999999887653 2332 134433
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 256 METSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 256 Ie~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
+...|.+.|+.++|..+|.......-. +...+..+-..+. ..|.+++|...+++.....
T Consensus 212 ---l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 212 ---LGATLANGNRPQEALDAYNRALDINPG-----YVRVMYNMAVSYS-------------NMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHHhC
Confidence 347889999999999999998765422 3344444333443 4566999999999886643
Q ss_pred CC------------CHHHHHHHHHHHHHhCChhhhhcCC
Q 005912 336 LP------------TDGTRNVLYQRVQKARRINRSRGRP 362 (670)
Q Consensus 336 ip------------~d~t~~~Ll~a~~~aG~~~eA~~~~ 362 (670)
-. ...++..+...+...|+.++|....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22 2468888999999999999998654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.83 E-value=1.8e-08 Score=110.21 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=8.8
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcC
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 121 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g 121 (670)
++|++++|.++++++. .|+ +|+.|..++.+.| ++++|++.|.+ .+|..+|..++.+|...|
T Consensus 15 ~~~~ld~A~~fae~~~------~~~--vWs~La~A~l~~g---~~~eAIdsfik--------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPA--VWSQLAKAQLQKG---MVKEAIDSYIK--------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChH--HHHHHHHHHHHcC---CHHHHHHHHHc--------CCCHHHHHHHHHHHHhCC
Confidence 6888999999999998 554 9999999999999 78899999954 267789999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 122 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 122 ~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
++++|+..+....+.. +. |.+.+.|+.+|++.|++.++.++|+
T Consensus 76 ~~EeAi~yl~~ark~~-~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~ 118 (449)
T 1b89_A 76 NWEELVKYLQMARKKA-RE---------SYVETELIFALAKTNRLAELEEFIN 118 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHhC-cc---------chhHHHHHHHHHHhCCHHHHHHHHc
Confidence 9999999887766531 11 1278899999999999999998885
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.9e-07 Score=90.53 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=168.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~ 78 (670)
..|.+.|++++|+.+|++..+.. .+...|..+-..|...|++++|...|++.........|+ ..+|..+-..|.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 45778999999999999998877 888999999999999999999999999976310111122 688999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
+.| +.++|+..|.+... +.|+. ..+.+.|++++|...+..+...... .+..|..+-.
T Consensus 91 ~~~---~~~~A~~~~~~a~~----~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~ 147 (258)
T 3uq3_A 91 KLG---DLKKTIEYYQKSLT----EHRTA-------DILTKLRNAEKELKKAEAEAYVNPE---------KAEEARLEGK 147 (258)
T ss_dssp HTT---CHHHHHHHHHHHHH----HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHH
T ss_pred Hcc---cHHHHHHHHHHHHh----cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc---------hHHHHHHHHH
Confidence 999 78999999999987 34663 3466778899999999998874211 1127889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.|.+.|++++|...|+...+... .+.. .+..+... +...|..++|...|+..
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~---~~~~----~~~~l~~~---------------------~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAP---EDAR----GYSNRAAA---------------------LAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc---ccHH----HHHHHHHH---------------------HHHhCCHHHHHHHHHHH
Confidence 99999999999999999887652 2221 23333332 36678899999999888
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
... .|+. ..+|.. +...|.+.|+.++|...|+......
T Consensus 200 l~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 IEK--DPNF-VRAYIR----KATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHH--CTTC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--CHHH-HHHHHH----HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 653 2432 133433 4478899999999999999886543
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.81 E-value=8.4e-07 Score=85.19 Aligned_cols=193 Identities=8% Similarity=-0.080 Sum_probs=151.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-C
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-E 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g 81 (670)
..|...|++++|+.+|++..+.. ..+...|..+...|...|++++|..+|++... . ...+..+|..+...|... |
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS--I-KPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHhcC
Confidence 46788999999999999988752 34678899999999999999999999999873 1 134678899999999999 9
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+.+|.++.. .+..|+ ..+|..+..+|.+.|++++|...|..+.+..... +..+..+...|
T Consensus 92 ---~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~ 157 (225)
T 2vq2_A 92 ---RPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---------PPAFKELARTK 157 (225)
T ss_dssp ---CHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------chHHHHHHHHH
Confidence 78999999999986 444454 6788889999999999999999999988753221 22788999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+.|++++|..+|+...+... ..+.. .+..+ ..++...|..+++..+++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~--~~~~~----~~~~~---------------------~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVE--VLQAD----DLLLG---------------------WKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC--SCCHH----HHHHH---------------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCCHH----HHHHH---------------------HHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999877531 02221 12111 1234677888999999888764
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.80 E-value=6.4e-07 Score=88.44 Aligned_cols=193 Identities=10% Similarity=-0.030 Sum_probs=151.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+.+|+++.... ..+...|..+...|.+.|++++|..+|++... .. ..+...|..+...|.+.|
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~la~~~~~~g- 119 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALA--SD-SRNARVLNNYGGFLYEQK- 119 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HC-cCcHHHHHHHHHHHHHHh-
Confidence 45778999999999999988753 34678899999999999999999999999873 11 346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+++|.+... .+..| +...|..+..+|.+.|++++|..+|....+..... +.+|..+...|.
T Consensus 120 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~ 186 (252)
T 2ho1_A 120 --RYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ---------PSVALEMADLLY 186 (252)
T ss_dssp --CHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHH
Confidence 78999999999876 44556 46778888899999999999999999988753221 227889999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|..+|+...+... .+.. .+..+. ..+...|..++|..+++.+...
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~---~~~~----~~~~~~---------------------~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGG---QNAR----SLLLGI---------------------RLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSC---CCHH----HHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc---CcHH----HHHHHH---------------------HHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999877542 1211 122222 2235678899999999888653
No 31
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.75 E-value=1.2e-06 Score=96.24 Aligned_cols=258 Identities=11% Similarity=-0.006 Sum_probs=186.0
Q ss_pred CChHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 9 GDHSNALEIAYEMEAAGRMAT--------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~Pd--------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|++++|+.+|+++.+. .|+ ..+|..+-..|...|++++|...|++... +.|+..+|..+-..|.+.
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHh
Confidence 5789999999998864 344 33567777888899999999999999873 357788999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+..|.+.... . ..+..+|..+...|...|++++|...|....+.... .+.+|..+...|
T Consensus 290 ~---~~~~A~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~ 354 (537)
T 3fp2_A 290 E---NSQEFFKFFQKAVDL--N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE---------NVYPYIQLACLL 354 (537)
T ss_dssp S---CCHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CSHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHhcc--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH
Confidence 9 788999999998872 2 235788999999999999999999999999875322 123899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+.|++++|..+|+...+.... .+. .+..+... +...|..++|...|+....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~-~~~------~~~~l~~~---------------------~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPT-LPE------VPTFFAEI---------------------LTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CTH------HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChH------HHHHHHHH---------------------HHHhCCHHHHHHHHHHHHH
Confidence 9999999999999998876521 221 13333222 3667889999999888754
Q ss_pred CCCCCCcccchhhhh--HHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 241 TPLDPDAVGFIYSNP--METSFKQRCLE----------DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 241 ~gi~Pd~d~~ty~~L--Ie~lv~~~~~~----------G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
.. |+.. ..+..+ +......|.+. |++++|...|+......-. +...+..+-..+.
T Consensus 407 ~~--~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~----- 473 (537)
T 3fp2_A 407 LE--EVQE-KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-----SEQAKIGLAQLKL----- 473 (537)
T ss_dssp HH--HHCS-SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-----
T ss_pred cC--Ccch-hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-----
Confidence 22 1111 111111 11123456666 9999999999998876432 3334444334444
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCC
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGL 336 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gi 336 (670)
..|+.++|..+|++.....-
T Consensus 474 --------~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 474 --------QMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp --------HTTCHHHHHHHHHHHHHHC-
T ss_pred --------HhccHHHHHHHHHHHHHhCC
Confidence 45679999999999987654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.71 E-value=2.5e-06 Score=84.16 Aligned_cols=203 Identities=6% Similarity=-0.105 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|...|++++|..+|+++.. . ...+...|..+...|.+.| +.++|+++|.+... .. ..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--I-DPSSADAHAALAVVFQTEM---EPKLADEEYRKALA--SD-SRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--c-CCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--HC-cCcHHH
Confidence 56678888899999999999999999873 1 1346889999999999999 88999999999887 22 236788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI 189 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i 189 (670)
|..+...|...|++++|.++|..+...+..+.. +..|..+...|.+.|++++|...|+...+... .+..
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~- 176 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPS- 176 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHH-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHH-
Confidence 999999999999999999999998772111111 12788899999999999999999999877642 1211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCH
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 269 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~ 269 (670)
.+..+... +...|..++|..+++..... .|+. ...+. .+...|.+.|+.
T Consensus 177 ---~~~~la~~---------------------~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~g~~ 225 (252)
T 2ho1_A 177 ---VALEMADL---------------------LYKEREYVPARQYYDLFAQG--GGQN-ARSLL----LGIRLAKVFEDR 225 (252)
T ss_dssp ---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHTT--SCCC-HHHHH----HHHHHHHHTTCH
T ss_pred ---HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CcCc-HHHHH----HHHHHHHHccCH
Confidence 13333322 36678899999999988653 2332 12333 244778899999
Q ss_pred HHHHHHHHHHHHCC
Q 005912 270 KYHRKLLRTLQNEG 283 (670)
Q Consensus 270 e~A~~Lf~~M~~~g 283 (670)
++|..+++.+....
T Consensus 226 ~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 226 DTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999998754
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.71 E-value=2e-06 Score=82.57 Aligned_cols=203 Identities=8% Similarity=-0.106 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+...|..+...|...|++++|..+|++... . ...+...|..+...|...| +.++|+..|.+... . ...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~--~-~~~~~~ 77 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--S-DPKNELAWLVRAEIYQYLK---VNDKAQESFRQALS--I-KPDSAE 77 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--h-CccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHH--h-CCCChH
Confidence 456788889999999999999999999873 1 1345889999999999999 78999999999887 2 123678
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 109 TYALLVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 109 Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
+|..+...|... |++++|..++..+.+.+..+.. +.+|..+...|.+.|++++|...|+.+.+... .+.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 147 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFP 147 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCc
Confidence 899999999999 9999999999999872211111 12788999999999999999999999877642 111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCC-CcccchhhhhHHHHHHHHHhc
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDP-DAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~P-d~d~~ty~~LIe~lv~~~~~~ 266 (670)
. .+..+... +...|..++|..+++..... .| +. ...+.. +...+...
T Consensus 148 ~----~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~--~~~~~-~~~~~~----~~~~~~~~ 195 (225)
T 2vq2_A 148 P----AFKELART---------------------KMLAGQLGDADYYFKKYQSR--VEVLQ-ADDLLL----GWKIAKAL 195 (225)
T ss_dssp H----HHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--HCSCC-HHHHHH----HHHHHHHT
T ss_pred h----HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CCCCC-HHHHHH----HHHHHHhc
Confidence 1 13333222 35567889999999887653 23 22 133433 33677889
Q ss_pred CCHHHHHHHHHHHHHC
Q 005912 267 DGKKYHRKLLRTLQNE 282 (670)
Q Consensus 267 G~~e~A~~Lf~~M~~~ 282 (670)
|+.+.|..+++.+...
T Consensus 196 ~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998754
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.66 E-value=2.2e-06 Score=85.22 Aligned_cols=225 Identities=10% Similarity=-0.086 Sum_probs=162.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 6 CKAGDHSNALEIAYEMEAAGRM---ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~---Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
...|++++|+..|+++.+.... .+..+|..+-..|...|++++|...|++... . -..+..+|..+-..|.+.|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~- 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--I-RPDMPEVFNYLGIYLTQAG- 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHTT-
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--c-CCCcHHHHHHHHHHHHHcc-
Confidence 3568899999999999876421 1467888999999999999999999999873 1 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+.... .| +..+|..+..+|.+.|++++|...|..+.+...... .+..++..+.
T Consensus 92 --~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~ 155 (275)
T 1xnf_A 92 --NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP----------FRSLWLYLAE 155 (275)
T ss_dssp --CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHH
Confidence 889999999999872 34 578899999999999999999999999987532211 3444555667
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|...|........ ++... +. +... +...+..+++...+......
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~---~~~~~----~~-~~~~---------------------~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSD---KEQWG----WN-IVEF---------------------YLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSC---CCSTH----HH-HHHH---------------------HTTSSCHHHHHHHHHHHCCS
T ss_pred HhcCHHHHHHHHHHHHhcCC---cchHH----HH-HHHH---------------------HHHhcCHHHHHHHHHHHhcc
Confidence 78999999999987776542 22211 11 1111 23344556777777776543
Q ss_pred CCCCCc-ccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 242 PLDPDA-VGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 242 gi~Pd~-d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.....+ +..+|. .+...|.+.|+.++|...|+......
T Consensus 207 ~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 207 NTSLAEHLSETNF----YLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccccccccHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 210000 013333 34478889999999999999988654
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.62 E-value=1.6e-06 Score=84.57 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=140.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+.+|++.... ...+...+..+...|.+.|++++|...|++... . ...+..+|..+...|.+.|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~-- 105 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALE--L-DSSAATAYYGAGNVYVVKE-- 105 (243)
T ss_dssp ----------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCcchHHHHHHHHHHHHhc--
Confidence 567889999999999998864 334688889999999999999999999999873 1 1346888999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.++|+.+|.+..+ . ...+..+|..+...|.+.|++++|..++..+.+.... .+..+..+...|.+.
T Consensus 106 -~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 106 -MYKEAKDMFEKALR--A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------DTEARFQFGMCLANE 172 (243)
T ss_dssp -CHHHHHHHHHHHHH--H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHc
Confidence 78899999999876 2 2346778889999999999999999999998875321 122788899999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
|++++|...|+...+... .+.. .+..+.. .+...|..++|..+|+...+
T Consensus 173 ~~~~~A~~~~~~~~~~~~---~~~~----~~~~la~---------------------~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP---GHAD----AFYNAGV---------------------TYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT---TCHH----HHHHHHH---------------------HHHHTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc---ccHH----HHHHHHH---------------------HHHHccCHHHHHHHHHHHHc
Confidence 999999999999877642 1211 1333222 23566788889988888765
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.61 E-value=3.6e-07 Score=92.46 Aligned_cols=169 Identities=9% Similarity=-0.001 Sum_probs=127.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-----CCCCCCHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA-------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE-----DYMKPDTETY 70 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~-------Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~-----~gi~Pd~~ty 70 (670)
..|...|++++|+.+|++..+. .......+++.+-..|...|++++|..+|++..... ........+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5678899999999999998763 233356678889999999999999999999876300 1112346788
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHK----RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~----gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+.+...|...| +.++|+.+|.+...... +-.| ...+|..+...|...|++++|.++|.......... .
T Consensus 115 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~-- 187 (311)
T 3nf1_A 115 NNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK--L-- 187 (311)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--S--
T ss_pred HHHHHHHHHcC---cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--h--
Confidence 99999999999 78899999988765200 2223 34668888899999999999999999987641000 0
Q ss_pred CCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 146 EGNFGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 146 ~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.+..|. +++.+...|.+.|++++|...|++..+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000111 788999999999999999999998875
No 37
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.55 E-value=2.8e-06 Score=78.52 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=131.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|+++... ...+...+..+...|...|++++|..+|++... . ...+...|..+...|...|
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~- 90 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--D-APDNVKVATVLGLTYVQVQ- 90 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHhc-
Confidence 4577889999999999888754 234688899999999999999999999999873 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.+... . ...+...+..+..+|.+.|++++|..++....+..... +.+|..+...|.+
T Consensus 91 --~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~ 156 (186)
T 3as5_A 91 --KYDLAVPLLIKVAE--A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---------GKVHRAIAFSYEQ 156 (186)
T ss_dssp --CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHh--c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHH
Confidence 78899999999876 2 23467888899999999999999999999988753211 2278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|+...+..
T Consensus 157 ~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 157 MGRHEEALPHFKKANELD 174 (186)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999876643
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.54 E-value=2.8e-05 Score=78.09 Aligned_cols=216 Identities=8% Similarity=-0.067 Sum_probs=167.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
.|.+.|++++|+..|++..+. -+...+..|-..|.. .+++++|...|++... .+ +...|..|-..|.+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHhC
Confidence 467789999999999998873 356778888889999 9999999999999873 33 78889999999998
Q ss_pred ----cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 80 ----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 80 ----~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
.+ +.++|+..|.+... .+ +..++..+-..|.+ .+++++|...|....+.+. +.
T Consensus 87 g~~~~~---~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~ 147 (273)
T 1ouv_A 87 GQGVSQ---NTNKALQYYSKACD--LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-----------GD 147 (273)
T ss_dssp TSSSCC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----------HH
T ss_pred CCCccc---CHHHHHHHHHHHHH--cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-----------HH
Confidence 88 78999999999887 43 77888889899999 9999999999999887541 22
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc---
Q 005912 152 PLSLYLRALCR----EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE--- 224 (670)
Q Consensus 152 tyn~LI~ay~k----~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~--- 224 (670)
++..+-..|.+ .+++++|...|+...+.+. +.. +..+-.. +..
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a------~~~lg~~---------------------~~~g~~ 197 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG------CFNAGNM---------------------YHHGEG 197 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH------HHHHHHH---------------------HHHTCS
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH------HHHHHHH---------------------HHcCCC
Confidence 67778888888 8999999999999887652 221 2222221 234
Q ss_pred -CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005912 225 -GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 225 -~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~ 285 (670)
.+..++|..+|+...+.+ | . ..+.. +...|.+ .++.++|...|+.....+..
T Consensus 198 ~~~~~~~A~~~~~~a~~~~--~-~--~a~~~----l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELE--N-G--GGCFN----LGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--C-H--HHHHH----HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccHHHHHHHHHHHHhCC--C-H--HHHHH----HHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 678999999998887653 2 2 33332 3356666 89999999999998877643
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.54 E-value=1.9e-06 Score=85.81 Aligned_cols=218 Identities=13% Similarity=-0.092 Sum_probs=156.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|++..... ..+..+|..+-..|...|++++|...|++... . ...+..+|..+...|.+.|
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~g- 125 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--L-DPTYNYAHLNRGIALYYGG- 125 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCTHHHHHHHHHHHHTT-
T ss_pred HHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c-CccccHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34688999999999999999999999999873 1 1235789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..|.++.. +.|+...+...+..+...|++++|..++.......... .. .++ ++..+..
T Consensus 126 --~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--------~~~-~~~~~~~ 189 (275)
T 1xnf_A 126 --RDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE-QW--------GWN-IVEFYLG 189 (275)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC-ST--------HHH-HHHHHTT
T ss_pred --cHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-hH--------HHH-HHHHHHH
Confidence 88999999999987 35666666666677788899999999998877643221 11 344 7777888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHH-HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMI-LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
.++.++|...+....... |.... ....+..+ ...+...|..++|...|+.....
T Consensus 190 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 190 NISEQTLMERLKADATDN----TSLAEHLSETNFYL---------------------GKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SSCHHHHHHHHHHHCCSH----HHHHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHhccc----ccccccccHHHHHH---------------------HHHHHHcCCHHHHHHHHHHHHhC
Confidence 889999999999885543 21100 00112222 23346778999999999998764
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHH
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLL 276 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf 276 (670)
.|+. ...+ ...+...|++++|+.-+
T Consensus 245 --~p~~-~~~~-------~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN-FVEH-------RYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT-CHHH-------HHHHHHHHHHHHC----
T ss_pred --Cchh-HHHH-------HHHHHHHHHHHhhHHHH
Confidence 2532 1222 13456677777776655
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.1e-05 Score=79.07 Aligned_cols=224 Identities=8% Similarity=-0.040 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
...|..+-..|.+.| +.++|+.+|.+... .. .+..+|..+..+|...|++++|...|............. .
T Consensus 5 a~~~~~~g~~~~~~~---~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR---QFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD--Y 75 (258)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--H
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--h
Confidence 456788888889999 78899999999887 44 778899999999999999999999999887643211000 0
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
...+.+|..+-..|.+.|++++|...|+...+.. |+..+ + ...|
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~----~----------------------------~~~~ 119 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTADI----L----------------------------TKLR 119 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHH----H----------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----chhHH----H----------------------------HHHh
Confidence 0001278999999999999999999999988754 32211 1 1223
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHcc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLI 306 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~ 306 (670)
..+++...++..... .|+. ...|. .+...|...|+.++|...|+......-. +...+..+-..+.
T Consensus 120 ~~~~a~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~--- 184 (258)
T 3uq3_A 120 NAEKELKKAEAEAYV--NPEK-AEEAR----LEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALA--- 184 (258)
T ss_dssp HHHHHHHHHHHHHHC--CHHH-HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHc--Ccch-HHHHH----HHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHH---
Confidence 445555555555432 1211 12222 2336677788888888888877664322 3333333333333
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 307 KGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 307 ~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|.+++|...+++.....-....+|..+-..+...|+.++|..
T Consensus 185 ----------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 185 ----------KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34557888888887766543334677777778888888887764
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.50 E-value=4.5e-06 Score=81.37 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=134.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|++..... ..+...+..+...|...|++++|..+|+++.. . ...+...|..+...|.+.|
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~- 139 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--A-GMENGDLFYMLGTVLVKLE- 139 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-TCCSHHHHHHHHHHHHHTS-
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34788899999999999999999999999873 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+.+|.+... . ...+...+..+...|.+.|++++|...|..+.+.... .+.+|..+...|.+
T Consensus 140 --~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 140 --QPKLALPYLQRAVE--L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---------HADAFYNAGVTYAY 205 (243)
T ss_dssp --CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHH
Confidence 88999999999876 2 2246788999999999999999999999998875321 12278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|+...+..
T Consensus 206 ~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHccC
Confidence 999999999999988764
No 42
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.50 E-value=1.9e-05 Score=81.55 Aligned_cols=220 Identities=8% Similarity=-0.050 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHchhCCCCCCC-CHHHHHHHHHH
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQA-------TCGIP-------EVAFATFENMEYGEDYMKP-DTETYNCVIQA 76 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya-------k~G~~-------e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~a 76 (670)
++|+.+|++.... ..-+...|..+...+. +.|++ ++|..+|++.. . .+.| +...|..+...
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl--~-~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--S-TLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH--T-TTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH--H-HhCcccHHHHHHHHHH
Confidence 6888999988764 2346778888877776 35886 99999999988 2 2245 56689999999
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.+.| +.++|..+|++..+ +.|+. .+|..+...+.+.|++++|..+|....+..... +..|.
T Consensus 109 ~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---------~~~~~ 172 (308)
T 2ond_A 109 EESRM---KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---------HHVYV 172 (308)
T ss_dssp HHHTT---CHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---------THHHH
T ss_pred HHhcC---CHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------HHHHH
Confidence 99999 88999999999986 45643 379999999999999999999999998753221 11454
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 155 LYLRALC-REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 155 ~LI~ay~-k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
....... ..|+.++|..+|+...+.. |+..- .+..++. ++...|..++|+.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~----p~~~~---~~~~~~~---------------------~~~~~g~~~~A~~ 224 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY----GDIPE---YVLAYID---------------------YLSHLNEDNNTRV 224 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH----TTCHH---HHHHHHH---------------------HHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHH---HHHHHHH---------------------HHHHCCCHHHHHH
Confidence 4433322 3699999999999887753 22211 1333332 2366789999999
Q ss_pred HHHHhccC-CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 234 WVPRRGKT-PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 234 lf~~m~~~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
+|+..... .+.|+.....|..++ ..+.+.|+.+.|..+++.+....
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~----~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFL----AFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHc
Confidence 99998775 345543234454444 66678899999999999887653
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.49 E-value=7.6e-06 Score=80.25 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=132.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc-
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA- 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~- 80 (670)
..+.+.|++++|+..|++..+. -+.+...|..+-..|.+.|++++|...|++... +.| +...|..+-..|.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHhh
Confidence 3577899999999999998864 234678889999999999999999999999773 234 577899999999999
Q ss_pred ----------CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 81 ----------ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 81 ----------g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
| +.++|+..|.+..+ +.| +...|..+-.+|...|++++|...|+...+.. . .
T Consensus 88 ~~~~~~~~~~g---~~~~A~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~--------~ 150 (217)
T 2pl2_A 88 RQAEDRERGKG---YLEQALSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D--------T 150 (217)
T ss_dssp HTCSSHHHHHH---HHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--------C
T ss_pred hhhhhhccccc---CHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c--------c
Confidence 9 89999999999877 346 46788888899999999999999999998854 1 2
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+..+..+-..|...|++++|...|+...+..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3378999999999999999999999988764
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.46 E-value=7.2e-06 Score=86.19 Aligned_cols=306 Identities=8% Similarity=-0.079 Sum_probs=192.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCC-CHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKP-DTETYNCVIQA 76 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~P-d~~tyn~LI~a 76 (670)
.+.+.|++++|+.+|++....+- .+ ...|..+-..|...|++++|...|++.... ..+-.| ...+|..+-..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 56788999999999999887632 23 357888889999999999999999886420 111122 25678888899
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCA--------------------VTEAIRHFRA 132 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~--------------------~d~A~~lf~~ 132 (670)
|...| +.++|+..|.+....... .++ ..+|..+-..|...|+ ++.|...+..
T Consensus 97 ~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 97 LKVLG---NFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999 788899888877541000 122 4578888899999999 9999999987
Q ss_pred HHHccCCCcccccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHH
Q 005912 133 LQNYEGGTKVLHNEGNFGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 209 (670)
Q Consensus 133 M~~~g~~~~v~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~ 209 (670)
....... .+..+. +|+.+-..|...|++++|...|++..+.... .++.......+..+.
T Consensus 173 al~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la----------- 234 (406)
T 3sf4_A 173 NLSLVTA------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLG----------- 234 (406)
T ss_dssp HHHHHHH------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-----------
T ss_pred HHHHHHh------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHH-----------
Confidence 6642100 011111 7888999999999999999999987653211 122111111222222
Q ss_pred HcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccC
Q 005912 210 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLG 288 (670)
Q Consensus 210 ~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g 288 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|++++|..+|.......-..
T Consensus 235 ----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-- 300 (406)
T 3sf4_A 235 ----------NAYIFLGEFETASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-- 300 (406)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred ----------HHHHHcCChHHHHHHHHHHHHHHHhCcCc--hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--
Confidence 22356678888888887764310 00111 1111222345588899999999999998876532210
Q ss_pred CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh----CCCCCH--HHHHHHHHHHHHhCChh
Q 005912 289 DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA----QGLPTD--GTRNVLYQRVQKARRIN 356 (670)
Q Consensus 289 ~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~d--~t~~~Ll~a~~~aG~~~ 356 (670)
.+......+...+...- ...|..++|..++++... .|-++. .++..+-..+...|+..
T Consensus 301 -~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 -NDRIGEGRACWSLGNAY---------TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp -TCHHHHHHHHHHHHHHH---------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -CCcHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11111112221221110 145678899888877543 344222 56777777777777664
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.46 E-value=7e-06 Score=83.12 Aligned_cols=283 Identities=8% Similarity=-0.081 Sum_probs=177.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCC-CCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYM-KPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi-~Pd~~tyn~LI~ 75 (670)
.+.+.|++++|+.+|++..+.. |+ ...|+.+-..|...|++++|...|++.... ..+- .....+|..+-.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 5678999999999999988763 33 467888999999999999999999886520 1111 123567888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCA--------------------VTEAIRHFR 131 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~--------------------~d~A~~lf~ 131 (670)
.|...| +.++|+..|.+....... .++ ..+|..+-..|...|+ ++.|.+.+.
T Consensus 92 ~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 92 TLKVLG---NFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHcc---CHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999 788888888876541011 122 3478888899999999 999999998
Q ss_pred HHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH
Q 005912 132 ALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 208 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m 208 (670)
........ .+..+ .++..+-..|...|++++|...|+...+.... .++.......+..+.
T Consensus 168 ~a~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~---------- 230 (338)
T 3ro2_A 168 ENLSLVTA------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLG---------- 230 (338)
T ss_dssp HHHHHHHH------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHh------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHH----------
Confidence 76542100 00001 17888899999999999999999987543211 111111111122222
Q ss_pred HHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 005912 209 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVL 287 (670)
Q Consensus 209 ~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~ 287 (670)
..+...|..++|..+++...... -.++. .........+...|...|+.++|...|+......-..
T Consensus 231 -----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~- 296 (338)
T 3ro2_A 231 -----------NAYIFLGEFETASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL- 296 (338)
T ss_dssp -----------HHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred -----------HHHHHcCCHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-
Confidence 22345567888888877654210 00111 1111222335578899999999999998876542210
Q ss_pred CCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhC
Q 005912 288 GDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 334 (670)
Q Consensus 288 g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~ 334 (670)
.+......+...+...- ...|..++|..++++....
T Consensus 297 --~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 --KDRIGEGRACWSLGNAY---------TALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp --TCHHHHHHHHHHHHHHH---------HHHTCHHHHHHHHHHHHHC
T ss_pred --CCcHHHHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHH
Confidence 11111111111121110 2556788999998887653
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.45 E-value=1.9e-05 Score=78.51 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=156.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay~k~ 80 (670)
..|.+.|++++|+.+|++..+.. +-+...+..+...|.+.|++++|...|++.. ..+-.|+ ..+|..+-..|.+.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYF--SKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--TTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHc
Confidence 45778999999999999988752 2244578888889999999999999999998 4322222 45589999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+..|.+.... . .-+..+|..+-..|...|++++|...|....+.... .+.+|..+-..+
T Consensus 88 ~---~~~~A~~~~~~a~~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~ 152 (272)
T 3u4t_A 88 G---QDSLAIQQYQAAVDR--D-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT---------DPKVFYELGQAY 152 (272)
T ss_dssp T---CHHHHHHHHHHHHHH--S-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC---------CHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHhc--C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC---------cHHHHHHHHHHH
Confidence 9 789999999998772 1 224578999999999999999999999988764211 112566666234
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...+++++|...|+...+.. |+... .+..+...+. .+ ......+.|...++....
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~----p~~~~---~~~~~~~~~~----~~--------------~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK----PNIYI---GYLWRARANA----AQ--------------DPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHH---HHHHHHHHHH----HH--------------STTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC----ccchH---HHHHHHHHHH----Hc--------------CcchhhHHHHHHHHHHHH
Confidence 44569999999999988764 32211 1222222110 00 010113334444443322
Q ss_pred C-CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 241 T-PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 241 ~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
. .-.|+.+..........+...|.+.|+.++|...|+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 111221100011111234477889999999999999988654
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.40 E-value=1.5e-05 Score=78.04 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP- 105 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P- 105 (670)
+++...+..+-..|.+.|++++|...|++... . -..+...|..+-..|.+.| +.++|+..|.+..+ +.|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~-~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~----~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--E-NPQDPEALYWLARTQLKLG---LVNPALENGKTLVA----RTPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T-SSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCC
Confidence 35667788888999999999999999999872 1 1346788999999999999 88999999999887 345
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 106 NVKTYALLVECFTKY-----------CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~-----------g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
+...|..+-.+|.+. |++++|...|+...+..+.. +.+|..+=..|...|++++|...|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---------~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---------APLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 467888888999999 99999999999988753221 1278888899999999999999999
Q ss_pred HHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh
Q 005912 175 AMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN 254 (670)
Q Consensus 175 ~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~ 254 (670)
+..+.+ . .+.. +..+... +...|..++|...|+..... .|+. ...+.
T Consensus 143 ~al~~~-~-~~~~------~~~la~~---------------------~~~~g~~~~A~~~~~~al~~--~P~~-~~~~~- 189 (217)
T 2pl2_A 143 QALALE-D-TPEI------RSALAEL---------------------YLSMGRLDEALAQYAKALEQ--APKD-LDLRV- 189 (217)
T ss_dssp HHHHHC-C-CHHH------HHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--STTC-HHHHH-
T ss_pred HHHhcc-c-chHH------HHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CCCC-hHHHH-
Confidence 987765 2 3322 3333332 35668899999999988653 2543 12333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTL 279 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M 279 (670)
.+...+.+.|+.++|...|+..
T Consensus 190 ---~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 190 ---RYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp ---HHHHHHTC--------------
T ss_pred ---HHHHHHHHccCHHHHHHHHHHH
Confidence 2447789999999999988764
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.37 E-value=4e-05 Score=71.91 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=129.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|++..+.. +-+...|..+-..|.+.|++++|...|..... ...-+...|..+-..+...+
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 87 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILGSANFMID- 87 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHcC-
Confidence 35778999999999999987652 23678899999999999999999999998863 11345677888888888888
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.+.|...+.+.... ..-+..++..+-.+|.+.|++++|.+.|+...+..+. .+.+|..+-..|.+
T Consensus 88 --~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 88 --EKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---------FIRAYQSIGLAYEG 153 (184)
T ss_dssp --CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---------hhhHHHHHHHHHHH
Confidence 788999999888762 2235778888999999999999999999998875322 12278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|++..+.+
T Consensus 154 ~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 999999999999887653
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.36 E-value=7.1e-06 Score=87.09 Aligned_cols=285 Identities=9% Similarity=-0.062 Sum_probs=180.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHchhC--CCC-CCCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-T----FHFNHLLSCQATCGIPEVAFATFENMEYG--EDY-MKPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~g-i~Pd~~tyn~LI~ 75 (670)
.|...|++++|+.+|++..+.+ |+ . ..|..+-..|...|++++|...|++.... ..+ ......+|+.+-.
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 5678899999999999988763 33 2 47888889999999999999999887520 011 1234577888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CC-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KR-LQPNVKTYALLVECFTKYCA-----------------VTEAIRHFRALQN 135 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~g-i~Pd~~Ty~~LL~a~ak~g~-----------------~d~A~~lf~~M~~ 135 (670)
.|...| +.++|+..|.+..... .+ ......+|..+-..|...|+ ++.|.+.+.....
T Consensus 135 ~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 135 TLKVMG---RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999 7888888888765410 01 11134578888899999999 9999999988664
Q ss_pred ccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcC
Q 005912 136 YEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELG 212 (670)
Q Consensus 136 ~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G 212 (670)
.... .+..+ .+|..+-..|...|++++|...|++..+.... ..+.......+..+
T Consensus 212 ~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l--------------- 269 (411)
T 4a1s_A 212 LMRD------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNL--------------- 269 (411)
T ss_dssp HHHH------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHH---------------
T ss_pred HHHH------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHH---------------
Confidence 2100 00001 17888899999999999999999987553211 01111111112222
Q ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhccCCC-CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCC
Q 005912 213 YEIDYIARYISEGGLTGERKRWVPRRGKTPL-DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVS 291 (670)
Q Consensus 213 ~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi-~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~ 291 (670)
...+...|..++|..+|+......- ..+. .........+...|...|+.++|..+|++.....-.. .+
T Consensus 270 ------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 338 (411)
T 4a1s_A 270 ------GNSHIFLGQFEDAAEHYKRTLALAVELGER--EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL---GD 338 (411)
T ss_dssp ------HHHHHTTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC
T ss_pred ------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CC
Confidence 2334677888999888877643210 0111 1111222345588899999999999999876542210 11
Q ss_pred HHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 292 ESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 292 ~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
......+...+...- ...|+.++|..++++.....
T Consensus 339 ~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAH---------SAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHH
Confidence 111111111111110 25577888888888876643
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.34 E-value=1.3e-05 Score=69.44 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
.|+.+...|...|++++|..+|+++.. .. ..+..+|..+...|...| +.++|..+|.++.. .. ..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~~-~~~~~~~~ 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--LD-PRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--HC-TTCHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cC-CcchhHHHHHHHHHHHhc---CHHHHHHHHHHHHH--HC-CCchHHHH
Confidence 467777888888888999888888762 11 346778888888888888 78888888888876 22 23567778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+...|...|++++|.++|..+.+..... +.++..+...|.+.|++++|...|+.+...+
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888899999998888887643211 2267788888889999999999888876543
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.34 E-value=0.0015 Score=71.66 Aligned_cols=310 Identities=11% Similarity=-0.019 Sum_probs=171.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR---- 79 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k---- 79 (670)
.+++++|+..|++..+.| +...+..|=..|.. .+++++|...|++... . -+...+..|=..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~---~~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--K---GLPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCC
Confidence 677888888887777654 45666667777777 7778888888877762 2 356666666666666
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+ +.++|+..|.+-.. .+ +...+..|-..|.. .++.++|.+.|....+.+. . ..+..
T Consensus 128 ~~---~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~---~--------~a~~~ 188 (490)
T 2xm6_A 128 KV---DKAESVKWFRLAAE--QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN---V--------WSCNQ 188 (490)
T ss_dssp CC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---H--------HHHHH
T ss_pred CC---CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---H--------HHHHH
Confidence 45 57777777777766 33 45566666666666 6777788877777766531 1 15666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCCCHHH--HHHHH
Q 005912 156 YLRALCR----EGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGYEIDY--IARYI 222 (670)
Q Consensus 156 LI~ay~k----~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~~pd~--i~~~~ 222 (670)
|-..|.+ .++.++|...|+...+.|. +... .++..|.. -...+...+....+.|...-. +-.++
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666 6777777777777666653 2221 12222211 123344455554444432211 11223
Q ss_pred Hc----CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCc-------
Q 005912 223 SE----GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE-----DGKKYHRKLLRTLQNEGPAV------- 286 (670)
Q Consensus 223 ~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~-----G~~e~A~~Lf~~M~~~gv~~------- 286 (670)
.. .+..++|..+|+...+.| ++ ..+..|- ..|... ++.++|+.+|+...+.+...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~--~a~~~Lg----~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 336 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NS--DGQYYLA----HLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGA 336 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CH--HHHHHHH----HHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CH--HHHHHHH----HHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 466777777777765543 11 2222222 344444 67777777777766654431
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCC--C-cccccc---cc----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 005912 287 ---LGDVSESDYVRVEERLKKLIKG--P-EQHVLK---PK----AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQK-- 351 (670)
Q Consensus 287 ---~g~~~~~~~~~~l~~l~k~~~~--p-~~~~L~---~~----~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~-- 351 (670)
.+ .....+..++..+.+.... | .+..+- .. .++.++|..+|++-.+.|. ...+..|-..|..
T Consensus 337 ~y~~~-g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 337 IYFRL-GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHS-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTS
T ss_pred HHHhC-CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 00 1122333333333333221 1 111111 11 4567777777777777663 2334444444444
Q ss_pred --hCChhhhh
Q 005912 352 --ARRINRSR 359 (670)
Q Consensus 352 --aG~~~eA~ 359 (670)
.++.++|.
T Consensus 414 g~~~d~~~A~ 423 (490)
T 2xm6_A 414 GVERDYVQAW 423 (490)
T ss_dssp SSCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 45555554
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.30 E-value=0.0001 Score=76.04 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=138.6
Q ss_pred hcCCh-------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HH-HHHHHHHH
Q 005912 7 KAGDH-------SNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TE-TYNCVIQA 76 (670)
Q Consensus 7 k~G~~-------~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~-tyn~LI~a 76 (670)
+.|++ ++|+.+|++-... +.| +...|..+...+.+.|++++|..+|++.. . +.|+ .. .|..+...
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~ 143 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--A--IEDIDPTLVYIQYMKF 143 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--T--SSSSCTHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--ccccCccHHHHHHHHH
Confidence 45776 8999999998863 244 56689999999999999999999999998 3 3454 33 89999999
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF-TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~-ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
+.+.| +.++|..+|.+..+ .. .++...|....... ...|+.+.|..+|+...+..+. .+..|..
T Consensus 144 ~~~~~---~~~~A~~~~~~a~~--~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~ 208 (308)
T 2ond_A 144 ARRAE---GIKSGRMIFKKARE--DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---------IPEYVLA 208 (308)
T ss_dssp HHHHH---CHHHHHHHHHHHHT--ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---------CHHHHHH
T ss_pred HHHhc---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHH
Confidence 99999 78999999999987 22 23444454333332 2379999999999998875321 2338999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc-hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPR-AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~-~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
++..+.+.|++++|..+|+....... ++|+ ... .|..++.- ....|..+.+..+
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~-l~p~~~~~---l~~~~~~~---------------------~~~~g~~~~a~~~ 263 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGE---IWARFLAF---------------------ESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHH---HHHHHHHH---------------------HHHHSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccC-CCHHHHHH---HHHHHHHH---------------------HHHcCCHHHHHHH
Confidence 99999999999999999999988641 2443 211 13333222 2445778888888
Q ss_pred HHHhcc
Q 005912 235 VPRRGK 240 (670)
Q Consensus 235 f~~m~~ 240 (670)
++...+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.29 E-value=2e-05 Score=77.94 Aligned_cols=166 Identities=10% Similarity=0.007 Sum_probs=118.9
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-----CCCCCCHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEA-------AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE-----DYMKPDTETYNCV 73 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~-------~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~-----~gi~Pd~~tyn~L 73 (670)
...|++++|+.+|++..+ ........+++.+-..|...|++++|...|++..... ..-.....+|+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666777777766553 1222356788999999999999999999999876300 1112346789999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhcc----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDH----KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~----~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
-..|...| +.++|+..|.+..... ..-.| ...+|..+-..|...|++++|..+|....+..... . ...
T Consensus 92 ~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~ 164 (283)
T 3edt_B 92 AVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--L--GPD 164 (283)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--S--CTT
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--c--CCC
Confidence 99999999 7888998888876510 01123 35778889999999999999999999988641000 0 000
Q ss_pred Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 149 FGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 149 ~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.|. ++..+-..|.+.|++++|..+|++..+
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 788999999999999999999998765
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.28 E-value=9.5e-05 Score=67.98 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|...|++++|...|+++. .. ...+..+|..+...|...| +.++|...|.+... . ...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY--DA-DAFDVDVALHLGIAYVKTG---AVDRGTELLERSLA--D-APDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC--CT-TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH--Hh-CccChHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--c-CCCCHHH
Confidence 3456778888999999999999999987 22 2347889999999999999 78999999999887 2 2346788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI 189 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i 189 (670)
|..+...|...|++++|.++|..+.+.... .+..+..+...|.+.|++++|...|+...+... .+..
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~- 145 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPI---------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGK- 145 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchH-
Confidence 899999999999999999999998875322 122788899999999999999999999877642 2211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+..+... +...|..++|..+++....
T Consensus 146 ---~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 146 ---VHRAIAFS---------------------YEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHH
Confidence 23333322 3567788999998887754
No 55
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.28 E-value=1.9e-05 Score=68.40 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...|...|++++|+.+|+++...+ ..+...+..+...|...|++++|..+|+++.. .. ..+...|..+...|.+.|
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HC-CCchHHHHHHHHHHHHhc
Confidence 356788999999999999998753 34678889999999999999999999999873 21 346788999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+.++|+.+|.++.. .. ..+..++..+...|.+.|++++|...|..+...
T Consensus 84 ---~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 ---DYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78999999999987 22 335788889999999999999999999988764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=0.0006 Score=68.19 Aligned_cols=228 Identities=8% Similarity=-0.095 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHhHhccCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k----~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
+..++..+-..|.+.|++++|...|++... .-+...|..|-..|.+ .+ +.++|+..|.+-.+ .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~---~~~~A~~~~~~a~~--~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEK---NLKKAASFYAKACD--LN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHH--TT--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCC---CHHHHHHHHHHHHH--CC--
Confidence 556777888889999999999999999883 3456788888888988 88 78999999999888 44
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 005912 105 PNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EGRIIELLEALEAM 176 (670)
Q Consensus 105 Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G~~eeA~~vf~~M 176 (670)
+...+..+-..|.. .+++++|...|......+ .+.++..|-..|.+ .|++++|...|+..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 77888889999999 999999999999988753 12378888889999 99999999999998
Q ss_pred hhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc----CCcHHHHHHHHHHhccCCCCCCcccchh
Q 005912 177 AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE----GGLTGERKRWVPRRGKTPLDPDAVGFIY 252 (670)
Q Consensus 177 ~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty 252 (670)
.+.+. +.. +..+-.. +.. .+..++|..+|+...+.+ ++ ..+
T Consensus 141 ~~~~~---~~a------~~~lg~~---------------------~~~~~~~~~~~~~A~~~~~~a~~~~---~~--~a~ 185 (273)
T 1ouv_A 141 CDLND---GDG------CTILGSL---------------------YDAGRGTPKDLKKALASYDKACDLK---DS--PGC 185 (273)
T ss_dssp HHTTC---HHH------HHHHHHH---------------------HHHTSSSCCCHHHHHHHHHHHHHTT---CH--HHH
T ss_pred HhcCc---HHH------HHHHHHH---------------------HHcCCCCCCCHHHHHHHHHHHHHCC---CH--HHH
Confidence 88662 222 2222111 233 678899999998887653 22 333
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 253 SNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 253 ~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
.. +...|.. .++.++|+..|+.....+.. ..+..+-..+.+ +. ...+..++|..+|
T Consensus 186 ~~----lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~~~-g~--------~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 186 FN----AGNMYHHGEGATKNFKEALARYSKACELENG-------GGCFNLGAMQYN-GE--------GVTRNEKQAIENF 245 (273)
T ss_dssp HH----HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHT-TS--------SSSCCSTTHHHHH
T ss_pred HH----HHHHHHcCCCCCccHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHc-CC--------CcccCHHHHHHHH
Confidence 33 3366677 99999999999998876532 122221122221 00 1245677888888
Q ss_pred HHHHhCC
Q 005912 329 EELDAQG 335 (670)
Q Consensus 329 ~~M~~~G 335 (670)
++-.+.|
T Consensus 246 ~~a~~~~ 252 (273)
T 1ouv_A 246 KKGCKLG 252 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 8888777
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.19 E-value=0.00012 Score=78.97 Aligned_cols=220 Identities=6% Similarity=-0.057 Sum_probs=154.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI-PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~-~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|++++|+..|++..... .-+...|+.+-..|.+.|+ +++|...|++... .. .-+...|+.+-..|.+.|
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~-P~~~~a~~~~g~~~~~~g- 180 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQ-PKNYQVWHHRRVLVEWLR- 180 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT-
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHcc-
Confidence 4667889999999999888642 2357788888888999996 9999999998873 11 236788999989999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+..+ +.| +...|..+-.++.+.|++++|+..|+.+.+..... +..|+.+-..|.
T Consensus 181 --~~~eAl~~~~kal~----ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~---------~~a~~~lg~~l~ 245 (382)
T 2h6f_A 181 --DPSQELEFIADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---------NSVWNQRYFVIS 245 (382)
T ss_dssp --CCTTHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Confidence 66788889998877 344 57888889999999999999999999988754321 127888888888
Q ss_pred H-cCCHHHH-----HHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--cHHHHHH
Q 005912 162 R-EGRIIEL-----LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG--LTGERKR 233 (670)
Q Consensus 162 k-~G~~eeA-----~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g--~~~~a~~ 233 (670)
+ .|..++| +..|+...+.. |+... .|..+... +...| ..+++..
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~----P~~~~---a~~~l~~l---------------------l~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV----PHNES---AWNYLKGI---------------------LQDRGLSKYPNLLN 297 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS----TTCHH---HHHHHHHH---------------------HTTTCGGGCHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC----CCCHH---HHHHHHHH---------------------HHccCccchHHHHH
Confidence 8 6665777 47777766643 33211 13332222 23344 4667777
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLED---------GKKYHRKLLRTL 279 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G---------~~e~A~~Lf~~M 279 (670)
++..+ + ..|+. .+.+.. +...|.+.| ..++|+.+|+.+
T Consensus 298 ~~~~~-~--~~p~~-~~al~~----La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 298 QLLDL-Q--PSHSS-PYLIAF----LVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-T--TTCCC-HHHHHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHh-c--cCCCC-HHHHHH----HHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 77776 2 33443 233433 346666653 358999999998
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.17 E-value=2.2e-05 Score=79.10 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-----KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-- 137 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~-----~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g-- 137 (670)
.+..+|..+...|...| +.++|+.+|.+..... ........++..+...|...|++++|..+|.......
T Consensus 25 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQG---RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34677888888899999 7788888888876510 0122245678888899999999999999999887641
Q ss_pred ----CCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCCchHHHHhHHHHHHHHHHHHHHHHH
Q 005912 138 ----GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ----PVPPRAMILSRKYRTLVSSWIEPLQEEA 209 (670)
Q Consensus 138 ----~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi----~i~p~~~i~~~ty~~ll~a~~~ll~~m~ 209 (670)
..+.. +.+|+.+...|...|++++|...|++..+... .-.+... ..+..+.
T Consensus 102 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~la----------- 160 (311)
T 3nf1_A 102 TLGKDHPAV-------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA---KQLNNLA----------- 160 (311)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH---HHHHHHH-----------
T ss_pred HhCCCChHH-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH---HHHHHHH-----------
Confidence 11111 11788999999999999999999998765410 0012211 1222222
Q ss_pred HcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC---CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 005912 210 ELGYEIDYIARYISEGGLTGERKRWVPRRGKT---PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG--- 283 (670)
Q Consensus 210 ~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~---gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g--- 283 (670)
..+...|..++|..+|+..... ...++. .........+...|.+.|+.++|..+|++.....
T Consensus 161 ----------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 161 ----------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp ----------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346778889999888877542 111111 1111222345588899999999999999887531
Q ss_pred ----CCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhh
Q 005912 284 ----PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRS 358 (670)
Q Consensus 284 ----v~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA 358 (670)
.. +....+......+...... + ...+...++...++...... |.. .++..+-..|...|++++|
T Consensus 229 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 229 EFGSVD----DENKPIWMHAEEREECKGK--Q----KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHC----------CCHHHHHHHHHHC-------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCCC----cchHHHHHHHHHHHHhcCc--h----hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHH
Confidence 11 1111111222222222210 0 11222222333444433322 322 6888899999999999998
Q ss_pred hcC
Q 005912 359 RGR 361 (670)
Q Consensus 359 ~~~ 361 (670)
...
T Consensus 298 ~~~ 300 (311)
T 3nf1_A 298 ETL 300 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.14 E-value=1.5e-05 Score=80.59 Aligned_cols=249 Identities=8% Similarity=-0.122 Sum_probs=160.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~L 73 (670)
..|...|++++|+..|++.... +-.| ...++..+-..|...|++++|...|++... ...-.++ ..+|+.+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHH
Confidence 4677899999999999886532 2222 256778888999999999999999988652 0000122 4588888
Q ss_pred HHHHHHcCCccc--------------------HHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005912 74 IQAYTRAESYDR--------------------VQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHF 130 (670)
Q Consensus 74 I~ay~k~g~~~~--------------------~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf 130 (670)
-..|...| + .++|+..|.+..... .+-.| ...+|..+...|...|++++|...+
T Consensus 130 ~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 130 GNVYHAKG---KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHHHH---HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcC---cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999 7 788888887764310 11111 2347788888999999999999999
Q ss_pred HHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHH
Q 005912 131 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAE 210 (670)
Q Consensus 131 ~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~ 210 (670)
....+....... ......++..+...|.+.|++++|...|++....... ..+.......+..+.
T Consensus 207 ~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la------------ 270 (338)
T 3ro2_A 207 EQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLG------------ 270 (338)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHH------------
Confidence 987753211000 0000017888999999999999999999876543211 111111111122222
Q ss_pred cCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 211 LGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 211 ~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|+.++|..+|++....
T Consensus 271 ---------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 271 ---------NTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp ---------HHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 23456678888888887764310 00111 111112234568889999999999999988754
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.14 E-value=0.0088 Score=73.22 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=67.1
Q ss_pred HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHH
Q 005912 220 RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299 (670)
Q Consensus 220 ~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l 299 (670)
..|.+.|..+++..++....+.. +++ ...+.+ ..+|++.++++....++ .+ ++...+..+=
T Consensus 1142 ~~~~~lGkyEEAIeyL~mArk~~--~e~--~Idt~L----afaYAKl~rleele~fI-----~~------~n~ad~~~iG 1202 (1630)
T 1xi4_A 1142 QAANTSGNWEELVKYLQMARKKA--RES--YVETEL----IFALAKTNRLAELEEFI-----NG------PNNAHIQQVG 1202 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhc--ccc--cccHHH----HHHHHhhcCHHHHHHHH-----hC------CCHHHHHHHH
Confidence 44577888899998888766543 332 222223 36778888887544332 11 3444444443
Q ss_pred HHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 300 ~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|. ..|.+++|..+|... ..|..+...+++.|++++|..
T Consensus 1203 d~le-------------~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1203 DRCY-------------DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHH-------------hcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 4444 456699999999984 479999999999999988863
No 61
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.14 E-value=0.0087 Score=65.57 Aligned_cols=234 Identities=10% Similarity=-0.053 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCCcc
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AESYD 84 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k----~g~~~ 84 (670)
.++..+....+.| +...+..|=..|.. .+++++|...|++... .-+...+..|=..|.. .+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~--- 93 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQ--- 93 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCC---
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCC---
Confidence 3456666665554 67788888888888 8999999999999873 2467788888888887 67
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|++.|.+-.+ .+ +...+..|-..|.. .++.++|...|+.....+. ++.+..|-..|
T Consensus 94 ~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------~~a~~~Lg~~y 157 (490)
T 2xm6_A 94 DYAQAVIWYKKAAL--KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-----------DSGQQSMGDAY 157 (490)
T ss_dssp CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------HHHHHHHHHHH
Confidence 78999999999887 44 66777778888888 8999999999999887652 22677787888
Q ss_pred HH----cCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCCCHHH--HHHHHHc---
Q 005912 161 CR----EGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGYEIDY--IARYISE--- 224 (670)
Q Consensus 161 ~k----~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~~pd~--i~~~~~~--- 224 (670)
.. .++.++|...|+...+.|. +... .++..|.. -...+...+....+.|...-. +-.++..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQGN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIG 234 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 87 8999999999999888763 3332 23333322 245566677777776643222 2233433
Q ss_pred -CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005912 225 -GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 225 -~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~ 285 (670)
.+..++|..+|+...+.| ++ ..+..|- ..|.. .++.++|+.+|+.....|..
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~--~a~~~lg----~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NS--IAQFRLG----YILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CH--HHHHHHH----HHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred CCCCHHHHHHHHHHHHHCC---CH--HHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 678999999999987764 22 3333332 34444 89999999999999877643
No 62
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.13 E-value=0.001 Score=69.73 Aligned_cols=247 Identities=10% Similarity=-0.020 Sum_probs=157.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTF----HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~----tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ 75 (670)
.+...|+++.|+..+++.....-..+.. .++.+-..|...|+++.|...|++... ...-.++ ..+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHH
Confidence 3567899999999999877643222222 456677788899999999999988652 0000122 234667777
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KRLQ--PN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~--Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
.|...| +.++|...|.+..... .+.. |. ..++..+-..|...|++++|...+.............. ..
T Consensus 102 ~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~ 174 (373)
T 1hz4_A 102 ILFAQG---FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ----QL 174 (373)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----GH
T ss_pred HHHHCC---CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----HH
Confidence 888999 7888888888765410 1221 32 35667788889999999999999998876432211000 01
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHH
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~ 230 (670)
.+|..+-..|...|++++|...+++............. +...+... ....+...|..++
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~-----~~~~~~~~----------------~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-----WISNANKV----------------RVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH-----HHHHHHHH----------------HHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh-----HHHHHHHH----------------HHHHHHHCCCHHH
Confidence 16888889999999999999999987643211011111 11110000 0112346688999
Q ss_pred HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 231 RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 231 a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|..++....... |...++.... ...+...+...|+.++|..+++.....
T Consensus 234 A~~~~~~a~~~~--~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 234 AANWLRHTAKPE--FANNHFLQGQ-WRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHSCCCC--CTTCGGGHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC--CCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998876532 2211121111 123557888999999999999887543
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.11 E-value=0.0006 Score=67.48 Aligned_cols=227 Identities=8% Similarity=0.020 Sum_probs=117.5
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
...-..|.+.| +.++|+.+|.+..+ ..|+ ...|..+..+|...|++++|...|.........+...
T Consensus 7 ~~~a~~~~~~~---~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------ 73 (272)
T 3u4t_A 7 FRYADFLFKNN---NYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK------ 73 (272)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC------
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH------
Confidence 33445555666 56677777777665 1232 3356666667777777777777777666532111111
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHH
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~ 229 (670)
+.+|..+-..|.+.|++++|...|+...+.... .+. .+..+... +...|..+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~------~~~~l~~~---------------------~~~~~~~~ 125 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLD------MYGQIGSY---------------------FYNKGNFP 125 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTH------HHHHHHHH---------------------HHHTTCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHH------HHHHHHHH---------------------HHHccCHH
Confidence 114666677777777777777777766654321 111 12222222 24556677
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCC
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGP 309 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p 309 (670)
+|...|+..... .|+. ..+|.. +...+...++.++|...|.......-. +...+...-..+..+++
T Consensus 126 ~A~~~~~~al~~--~~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~~~~~~~~~~-- 191 (272)
T 3u4t_A 126 LAIQYMEKQIRP--TTTD-PKVFYE----LGQAYYYNKEYVKADSSFVKVLELKPN-----IYIGYLWRARANAAQDP-- 191 (272)
T ss_dssp HHHHHHGGGCCS--SCCC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHhhc--CCCc-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCc--
Confidence 777777666543 2322 122211 111223345777777777777654322 22222222222222211
Q ss_pred cccccccccCCHHHHHHHHHHHHhCCC--CC------HHHHHHHHHHHHHhCChhhhhc
Q 005912 310 EQHVLKPKAASKMVVSELKEELDAQGL--PT------DGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 310 ~~~~L~~~~g~~~~A~~l~~~M~~~Gi--p~------d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
....++|...+++..+..- |. ..+|..+-..+...|++++|..
T Consensus 192 --------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 192 --------DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp --------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0113334445544433221 21 1467778888889999998864
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.11 E-value=2e-05 Score=82.69 Aligned_cols=246 Identities=8% Similarity=-0.108 Sum_probs=160.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~L 73 (670)
..|...|++++|+..|++.... +-.| ...+|..+-..|...|++++|...|++... ...-.++ ..+|+.+
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHH
Confidence 4677899999999999886532 2222 255778888899999999999999988753 0000122 4588888
Q ss_pred HHHHHHcCCccc--------------------HHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005912 74 IQAYTRAESYDR--------------------VQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHF 130 (670)
Q Consensus 74 I~ay~k~g~~~~--------------------~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf 130 (670)
-..|...| + .++|+..|.+..... .+-.| ...+|..+-..|...|++++|...|
T Consensus 134 ~~~~~~~g---~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 134 GNVYHAKG---KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHH---HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHcC---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 89999999 7 788888887654310 11112 2357888889999999999999999
Q ss_pred HHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHH
Q 005912 131 RALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQE 207 (670)
Q Consensus 131 ~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~ 207 (670)
....+..... +..+ .+|+.+-..|.+.|++++|...|+...+.... ..+......++..+.
T Consensus 211 ~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la--------- 274 (406)
T 3sf4_A 211 EQRLLIAKEF------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLG--------- 274 (406)
T ss_dssp HHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHH---------
Confidence 9887532110 0000 17888999999999999999999987543211 111111111222222
Q ss_pred HHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 208 EAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 208 m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|+.++|...|++....
T Consensus 275 ------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 275 ------------NTYTLLQDYEKAIDYHLKHLAIAQELNDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHhCcHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23466778888888887764311 00111 111122234558889999999999999886543
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.08 E-value=0.00011 Score=77.95 Aligned_cols=281 Identities=9% Similarity=-0.109 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-H----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCC-
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-T----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRL- 103 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi- 103 (670)
.+..+-..|...|++++|..+|++... . .|+ . ..|..+-..|...| +.++|+..|.+..... .+-
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQ--A--GTEDLRTLSAIYSQLGNAYFYLG---DYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH--h--cccChhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHccCc
Confidence 344455678899999999999999873 2 333 2 57889999999999 7888888888775410 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCC---------------
Q 005912 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGR--------------- 165 (670)
Q Consensus 104 ~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~--------------- 165 (670)
.....+|..+-..|...|++++|...|......... .+..+ .+|+.+-..|...|+
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ------LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 123467888889999999999999999987753110 00011 178889999999999
Q ss_pred --HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 166 --IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 166 --~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
+++|...|++..+..... .+.......+..+ ...+...|..++|..+|+......-
T Consensus 197 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDL-GDRGAQGRACGNL---------------------GNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH---------------------HHHHHHcCChHHHHHHHHHHHHHHH
Confidence 888888887754321000 0101001112222 2234566788888888877643210
Q ss_pred -CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHH
Q 005912 244 -DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 322 (670)
Q Consensus 244 -~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~ 322 (670)
.++. .........+...|...|+.++|...|++.....-.. .+......+...+... -...|+++
T Consensus 255 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~---------~~~~g~~~ 320 (411)
T 4a1s_A 255 EFGDR--AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNT---------YTLLHEFN 320 (411)
T ss_dssp HHTCH--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH---------HHHTTCHH
T ss_pred hcCCc--HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH---------HHHcCCHH
Confidence 0111 1111122235588899999999999998876542210 1111111222112111 02567799
Q ss_pred HHHHHHHHHHhC----CCCCH--HHHHHHHHHHHHhCChhhhhcC
Q 005912 323 VVSELKEELDAQ----GLPTD--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 323 ~A~~l~~~M~~~----Gip~d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+|..++++.... +-+.. .++..+-..+...|+.++|...
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999887553 22222 4777888999999999998754
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.08 E-value=0.0005 Score=76.42 Aligned_cols=218 Identities=7% Similarity=-0.051 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHchhCCCCCCC-CHHHHHHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQAT-------CGIPE-------VAFATFENMEYGEDYMKP-DTETYNCVIQAY 77 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak-------~G~~e-------~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay 77 (670)
+|+.+|++.... ..-+...|..+...+.+ .|+++ +|..+|++.. . .+.| +...|..+...+
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al--~-~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--S-TLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT--T-TTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH--H-HhCcccHHHHHHHHHHH
Confidence 666778776654 23367788888888776 69987 8999999987 2 2234 588999999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+.| +.++|..+|+...+ +.|+ ...|......+.+.|+++.|+.+|....+.... . +..|-.
T Consensus 332 ~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~--------~~~~~~ 395 (530)
T 2ooe_A 332 ESRM---KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R--------HHVYVT 395 (530)
T ss_dssp HHTT---CHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C--------THHHHH
T ss_pred HhcC---CHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c--------hHHHHH
Confidence 9999 88999999999987 3564 257888888899999999999999998874221 1 112222
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 156 YLR-ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 156 LI~-ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
... .|...|+.++|..+|+...+.. |+... .+..++.. ....|..+.|+.+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~---~~~~~~~~---------------------~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY----GDIPE---YVLAYIDY---------------------LSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHH---HHHHHHHH---------------------HTTTTCHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC----CCCHH---HHHHHHHH---------------------HHhCCCHhhHHHH
Confidence 221 2346899999999999887653 32211 13333322 3566899999999
Q ss_pred HHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 235 VPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 235 f~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|+.....+ ..|......|... +....+.|+.+.+..++..+...
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~----~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARF----LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHH----HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99987642 3333211234333 35557789999999999887654
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.07 E-value=0.00063 Score=83.05 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=164.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
..+++++|.++..+.. +..+|..+=.++...|++++|..-|.+- -|...|.-++.+|.+.| +.
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lG---ky 1150 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSG---NW 1150 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcC---CH
Confidence 6678888888877552 4677788888888888888888888543 36777888888888888 67
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
++|+++|..-+. ..++....+.+..+|++.++++....+. + .++.. .|..+=..|-..|++
T Consensus 1151 EEAIeyL~mArk----~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a--------d~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1151 EELVKYLQMARK----KARESYVETELIFALAKTNRLAELEEFI----N---GPNNA--------HIQQVGDRCYDEKMY 1211 (1630)
T ss_pred HHHHHHHHHHHh----hcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH--------HHHHHHHHHHhcCCH
Confidence 788888876544 2344444455888888888877544332 1 11111 344566666677777
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY---IARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~---i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
++|..+|.... .|......+...+-++.+++..+.. ..+.. +...|...|....|......+..
T Consensus 1212 eeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--- 1278 (1630)
T 1xi4_A 1212 DAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--- 1278 (1630)
T ss_pred HHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---
Confidence 77777776631 1111110111111111221111111 11221 23445556666666665443222
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
+++.+ +.++..|-+.|.+++|+.+++.-.... + ...+.++.+-..+.+- +.+...+
T Consensus 1279 --~~deL------eeli~yYe~~G~feEAI~LlE~aL~Le-r----aH~gmftELaiLyaKy-----------~peklmE 1334 (1630)
T 1xi4_A 1279 --HADEL------EELINYYQDRGYFEELITMLEAALGLE-R----AHMGMFTELAILYSKF-----------KPQKMRE 1334 (1630)
T ss_pred --CHHHH------HHHHHHHHHcCCHHHHHHHHHHHhccC-h----hHhHHHHHHHHHHHhC-----------CHHHHHH
Confidence 22112 345588899999999999996654333 2 3445555544444442 4455777
Q ss_pred HHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhCChhhhhc
Q 005912 324 VSELKEELDAQGLPT-------DGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 324 A~~l~~~M~~~Gip~-------d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
+.++|.. +-.+|+ ...|.-++..|.+.|.++.|..
T Consensus 1335 hlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777763 333444 2578888888999999998874
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.07 E-value=0.00038 Score=74.91 Aligned_cols=256 Identities=9% Similarity=0.009 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCccc-HHHHHHHHHHhHhccCCCCC-C
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~-~~eAl~lf~eM~~~~~gi~P-d 106 (670)
...|+.+-..|.+.|++++|...|++... +.| +...|+.+-..|.+.| + .++|+..|++... +.| +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g---~d~~eAl~~~~~al~----l~P~~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIE----EQPKN 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH----HCTTC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHH----HCCCC
Confidence 45678888889999999999999999873 244 5788999999999999 6 8999999999987 345 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
...|..+-.+|.+.|++++|+..|+.+.+..... +.+|+.+-.+|.+.|++++|+..|+.+.+.+. .+
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P---~~ 233 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV---RN 233 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---TC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC
Confidence 7889999999999999999999999998753221 22799999999999999999999999988763 22
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc-CCcHHHH-----HHHHHHhccCCCCCCcccchhhhhHHHHH
Q 005912 187 AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE-GGLTGER-----KRWVPRRGKTPLDPDAVGFIYSNPMETSF 260 (670)
Q Consensus 187 ~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~-~g~~~~a-----~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv 260 (670)
.. .|+.+...+ .. .|..++| ...|+.... +.|+. ...|+.+-
T Consensus 234 ~~----a~~~lg~~l---------------------~~l~~~~~eA~~~~el~~~~~Al~--l~P~~-~~a~~~l~---- 281 (382)
T 2h6f_A 234 NS----VWNQRYFVI---------------------SNTTGYNDRAVLEREVQYTLEMIK--LVPHN-ESAWNYLK---- 281 (382)
T ss_dssp HH----HHHHHHHHH---------------------HHTTCSCSHHHHHHHHHHHHHHHH--HSTTC-HHHHHHHH----
T ss_pred HH----HHHHHHHHH---------------------HHhcCcchHHHHHHHHHHHHHHHH--HCCCC-HHHHHHHH----
Confidence 21 244433333 22 4443444 355555543 23543 23444333
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccC-CHHHHHHHHHHH-HhCCC
Q 005912 261 KQRCLED--GKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA-SKMVVSELKEEL-DAQGL 336 (670)
Q Consensus 261 ~~~~~~G--~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g-~~~~A~~l~~~M-~~~Gi 336 (670)
..|.+.| +.++|++++..+ .... .+...+..+...+.+.+.. .. ...+ ..++|..+++++ .+..
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p-----~~~~al~~La~~~~~~~~~--~~---~~~~~~~~~A~~~~~~l~~~~D- 349 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSH-----SSPYLIAFLVDIYEDMLEN--QC---DNKEDILNKALELCEILAKEKD- 349 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTC-----CCHHHHHHHHHHHHHHHHT--TC---SSHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHccCccchHHHHHHHHHh-ccCC-----CCHHHHHHHHHHHHHHhcc--cc---cchHHHHHHHHHHHHHHHHHhC-
Confidence 5566677 588999999887 2221 2445555555556554210 00 0112 258899999998 4432
Q ss_pred CCH-HHHHHHHHHHHHh
Q 005912 337 PTD-GTRNVLYQRVQKA 352 (670)
Q Consensus 337 p~d-~t~~~Ll~a~~~a 352 (670)
|.. ..|.-+...+...
T Consensus 350 P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 350 TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 544 5666665555443
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.0035 Score=67.56 Aligned_cols=172 Identities=11% Similarity=0.022 Sum_probs=105.1
Q ss_pred HHHhcCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh----CCCCCC-CCHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA--------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEY----GEDYMK-PDTETY 70 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~--------Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~----~~~gi~-Pd~~ty 70 (670)
.|...|++++|++.|++-.+. ......++|+.+-..|...|++++|...|++... ...... ....+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 456789999999999875431 1233578999999999999999999999887642 011112 235666
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHH---HHHHcCCHHHHHHHHHHHHHccCCCccc---
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVE---CFTKYCAVTEAIRHFRALQNYEGGTKVL--- 143 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~---a~ak~g~~d~A~~lf~~M~~~g~~~~v~--- 143 (670)
+.+-.++.+.|. .+.++|+..|.+..+ +.|+. ..+..+.. .+...+..++|.+.++...+........
T Consensus 140 ~~~g~~~~~~~~-~~y~~A~~~~~kal~----~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 140 CEEGWTRLKCGG-NQNERAKVCFEKALE----KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHCT-THHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcc-ccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 666556665542 147889999988766 34543 22322222 2344555566666665544432211000
Q ss_pred --------------------------ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 144 --------------------------HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 144 --------------------------~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
......+.+++.+-..|.+.|++++|...|+...+..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 0001111267777778888888888888888776653
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.06 E-value=0.00013 Score=77.17 Aligned_cols=236 Identities=8% Similarity=-0.071 Sum_probs=157.5
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCC--CCCCHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDY--MKPDTETYNCVI 74 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~g--i~Pd~~tyn~LI 74 (670)
.+...|++++|+..|++.... +-.+ ...+|+.+-..|...|+++.|...|++... ...+ ......+|+.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 356789999999999998753 1111 346788888999999999999999988653 0111 112256788888
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cCCCcccccC
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNY----EGGTKVLHNE 146 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~----g~~~~v~~~~ 146 (670)
..|...| +.++|+..|.+........ ++ ..+|..+-.+|...|++++|.+.|...... +..+..
T Consensus 192 ~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---- 263 (383)
T 3ulq_A 192 TNFLDLK---QYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL---- 263 (383)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH----
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH----
Confidence 9999999 7888888888765410111 22 247888999999999999999999988762 110111
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV-PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i-~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+++.+-..|.+.|++++|...|++..+..... .+.... .+.. +...+...
T Consensus 264 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~---------------------l~~~~~~~ 316 (383)
T 3ulq_A 264 ---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS---EFEF---------------------LKSLYLSG 316 (383)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH---HHHH---------------------HHHHHTSS
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHH---------------------HHHHHhCC
Confidence 1278999999999999999999998765432100 111110 0111 11223445
Q ss_pred Cc---HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 226 GL---TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 226 g~---~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|. ..+|..+++.... .|... ..+ ..+...|.+.|+.++|...|+.....
T Consensus 317 ~~~~~~~~al~~~~~~~~---~~~~~-~~~----~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKML---YADLE-DFA----IDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHH-HHH----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCcC---HHHHH-HHH----HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55 6777777776522 12210 112 23568899999999999999887643
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.06 E-value=0.00047 Score=64.43 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
++..|..|=..|.+.|++++|...|++..+ +.| +..+|..+-..|.+.| +.++|+..+...... ..-+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~---~~~~~ 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVL---DTTSA 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH---CCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhc---CchhH
Confidence 677899999999999999999999999763 233 6788999999999999 788999999988762 22356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
..+..+-..+...++++.+...+......... .+.++..+-..|.+.|++++|...|++..+.+ |+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~ 140 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTV---------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PGF 140 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----chh
Confidence 77778888899999999999999998774321 12278889999999999999999999988764 222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.. .+..+... +...|..++|...|+...+
T Consensus 141 ~~---~~~~lg~~---------------------~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 IR---AYQSIGLA---------------------YEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HH---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred hh---HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHh
Confidence 11 23333333 3667889999999988755
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.98 E-value=3.9e-05 Score=75.85 Aligned_cols=173 Identities=11% Similarity=0.015 Sum_probs=126.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhC-----CCCCCCCHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA------GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYG-----EDYMKPDTETY 70 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~------Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~-----~~gi~Pd~~ty 70 (670)
..|...|++++|+..|.+.... +-.| ...+|+.+-..|...|++++|...|++.... ...-.....+|
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4677899999999999988754 2223 4667899999999999999999999987630 01112246788
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhcc---C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC------
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDH---K-RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG------ 139 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~---~-gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~------ 139 (670)
..+-..|...| +.++|+..|.+..... . +-.| ...+|..+-.+|.+.|++++|..+|....+....
T Consensus 131 ~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 131 NNLALLCQNQG---KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999 7889999998886510 0 1133 3567888999999999999999999988763100
Q ss_pred -Ccc-----------------------------cccC-CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 140 -TKV-----------------------------LHNE-GNFGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 140 -~~v-----------------------------~~~~-g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+.. .... ...|. +|..|-..|.+.|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0000 01122 788899999999999999999998654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.95 E-value=0.00024 Score=82.95 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=126.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
..|.+.|++++|+..|++..+. .| +...|+.|=..|.+.|++++|...|++..+ +.| +...|+.|=..|.+.
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHc
Confidence 3577899999999999988764 34 578889999999999999999999998763 244 478899999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| +.++|++.|++..+ +.|+ ...|+.+-.+|.+.|++++|...|+...+.... .+..|..|...
T Consensus 91 g---~~~~A~~~~~kAl~----l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---------~~~a~~~L~~~ 154 (723)
T 4gyw_A 91 Q---DVQGALQCYTRAIQ----INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---------FPDAYCNLAHC 154 (723)
T ss_dssp T---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------CHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHhhhhhH
Confidence 9 78899999999876 3564 678999999999999999999999998875321 12288999999
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 005912 160 LCREGRIIELLEALEAMA 177 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~ 177 (670)
|.+.|++++|.+.|++..
T Consensus 155 l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHTTCCTTHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 999999999888887654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.93 E-value=0.00019 Score=79.19 Aligned_cols=214 Identities=10% Similarity=-0.065 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHH
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP-EVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQD 88 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~-e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~e 88 (670)
+++++..+...... -..+...|..+-..|...|++ ++|...|++... +.| +...|+.+-..|.+.| +.++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g---~~~~ 155 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPELVEAWNQLGEVYWKKG---DVTS 155 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHT---CHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcC---CHHH
Confidence 56667777665532 234788888888999999999 999999999763 134 4789999999999999 8899
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVECFTKY---------CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~---------g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
|+..|.+..+ +.|+..+|..+-.+|... |++++|...|+...+.... .+..|+.+-.+
T Consensus 156 A~~~~~~al~----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~ 222 (474)
T 4abn_A 156 AHTCFSGALT----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---------DGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHHT----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred HHHHHHHHHh----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH
Confidence 9999999977 468888899999999999 9999999999998875322 12278889999
Q ss_pred HHHc--------CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 160 LCRE--------GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 160 y~k~--------G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
|... |++++|...|+...+.... .++... .|..+... +...|..++|
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~---~~~~lg~~---------------------~~~~g~~~~A 277 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPD---LHLNRATL---------------------HKYEESYGEA 277 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHH---HHHHHHHH---------------------HHHTTCHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHH---HHHHHHHH---------------------HHHcCCHHHH
Confidence 9988 9999999999998775310 002211 23333332 3667899999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...|+..... .|+. ...+.. +...+...|+.++|+..+.
T Consensus 278 ~~~~~~al~l--~p~~-~~a~~~----l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 278 LEGFSQAAAL--DPAW-PEPQQR----EQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCC-HHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 9999887653 2443 122322 3366677777777776543
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.92 E-value=0.00064 Score=75.51 Aligned_cols=152 Identities=12% Similarity=0.062 Sum_probs=119.5
Q ss_pred cCChH-------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHH
Q 005912 8 AGDHS-------NALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAY 77 (670)
Q Consensus 8 ~G~~~-------~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay 77 (670)
.|+++ +|+.+|++-.+. +.| +...|..+...+.+.|++++|..+|++... +.|+ ...|..+...+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHH
Confidence 68877 899999888752 334 688999999999999999999999999883 3454 35899999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYAL-LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~-LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+.| +.++|..+|.+-.+ . .|+ ...|.. ....+...|+.++|..+|+...+..+ ..++.|..
T Consensus 367 ~~~~---~~~~A~~~~~~Al~--~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p---------~~~~~~~~ 430 (530)
T 2ooe_A 367 RRAE---GIKSGRMIFKKARE--D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---------DIPEYVLA 430 (530)
T ss_dssp HHHH---HHHHHHHHHHHHHT--C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT---------TCHHHHHH
T ss_pred HHhc---CHHHHHHHHHHHHh--c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC---------CCHHHHHH
Confidence 9999 89999999999876 2 232 233322 22234469999999999998877532 12338999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 156 YLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
++..+.+.|+.++|..+|+.....+
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999999999999999999998875
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.88 E-value=0.00033 Score=68.07 Aligned_cols=145 Identities=13% Similarity=0.026 Sum_probs=113.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|++++|+..|++.....-.++...+..+-..|.+.|++++|...|++... ..| +...|..+-..|.+.|
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~- 90 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNLANAYIGKSAAYRDMK- 90 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHHHHHHHHHHHHTT-
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHcc-
Confidence 5678999999999999988765446777777799999999999999999999873 234 5678999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-V-------KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~-------~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.++|+..|.+..+ +.|+ . .+|..+-..+.+.|++++|...|....+....... +.+|.
T Consensus 91 --~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~ 157 (228)
T 4i17_A 91 --NNQEYIATLTEGIK----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-------TDALY 157 (228)
T ss_dssp --CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-------HHHHH
T ss_pred --cHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-------HHHHH
Confidence 78999999999877 3454 3 45777778888999999999999998874221001 12677
Q ss_pred HHHHHHHHcCCH
Q 005912 155 LYLRALCREGRI 166 (670)
Q Consensus 155 ~LI~ay~k~G~~ 166 (670)
.+-..|...|+.
T Consensus 158 ~l~~~~~~~~~~ 169 (228)
T 4i17_A 158 SLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.87 E-value=0.00019 Score=79.26 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=132.5
Q ss_pred HHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc--
Q 005912 4 EDCKAGDH-SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-- 80 (670)
Q Consensus 4 ~y~k~G~~-~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-- 80 (670)
.|...|++ ++|+..|++..+.. .-+...|+.|-..|.+.|++++|...|++... +.|+...|..+-..|.+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT----HCKNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCCCHHHHHHHHHHHTTCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHhcc
Confidence 56678999 99999999988752 23588999999999999999999999999883 358888999999999988
Q ss_pred -------CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHccCCCcccc
Q 005912 81 -------ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY--------CAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 81 -------g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~--------g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
| +.++|+..|.+..+ +.| +...|..+-.+|... |++++|...|+...+....
T Consensus 186 ~~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----- 253 (474)
T 4abn_A 186 DSGDEHSR---HVMDSVRQAKLAVQ----MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK----- 253 (474)
T ss_dssp SCHHHHHH---HHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----
T ss_pred CChhhhhh---hHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----
Confidence 8 88999999999887 235 478889999999998 9999999999999875320
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....+..|..+-..|.+.|++++|...|++..+..
T Consensus 254 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 254 -ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp -GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00112289999999999999999999999987764
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.86 E-value=0.0013 Score=69.44 Aligned_cols=300 Identities=7% Similarity=-0.075 Sum_probs=179.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHH--HcCChHHHH-----------HHHHHchhCCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA--GRM--ATTFHFNHLLSCQA--TCGIPEVAF-----------ATFENMEYGEDYMKPD 66 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~--Gv~--Pd~~tyn~LI~~ya--k~G~~e~A~-----------~lf~~M~~~~~gi~Pd 66 (670)
.+.+.+++++|..++++..+. .+. ++...|-.|+..-. -.+.++.+. .+|+.+.. .|+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-----~~~ 95 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-----KQA 95 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-----HTH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-----cCC
Confidence 356889999999999998754 232 34444444444321 223344444 67777652 111
Q ss_pred H-HH----HH--HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 67 T-ET----YN--CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 67 ~-~t----yn--~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
. .. |- ..-..+...| +.++|+..|.+....... .|| ..+|..+-..|...|+++.|...+.....
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQR---EYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11 11 1233456778 788999999988652111 233 35788888999999999999999998775
Q ss_pred ccCCCcccccCCC-Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHc
Q 005912 136 YEGGTKVLHNEGN-FG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 211 (670)
Q Consensus 136 ~g~~~~v~~~~g~-~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~ 211 (670)
.-... +. .+ .+++.+-..|...|++++|...|++..+.... ..+....+.++..+..
T Consensus 172 ~~~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~------------ 232 (383)
T 3ulq_A 172 IYKEH------EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EKQPQLMGRTLYNIGL------------ 232 (383)
T ss_dssp HHHTC------STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH------------
T ss_pred HHHhC------ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHH------------
Confidence 31110 00 01 17888889999999999999999876543211 1222211222333322
Q ss_pred CCCHHHHHHHHHcCCcHHHHHHHHHHhccC----CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 005912 212 GYEIDYIARYISEGGLTGERKRWVPRRGKT----PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVL 287 (670)
Q Consensus 212 G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~----gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~ 287 (670)
.+...|..++|...|+..... +-.|.. ..++. .+...|.+.|+.++|...|++.....-..
T Consensus 233 ---------~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 297 (383)
T 3ulq_A 233 ---------CKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYF----LITQIHYKLGKIDKAHEYHSKGMAYSQKA- 297 (383)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred ---------HHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 236678889998888776541 111221 12232 35588899999999999998876542210
Q ss_pred CCCCHHHHHHHHHHHHHccCCCcccccccccCC---HHHHHHHHHHHHhCCC-CCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 288 GDVSESDYVRVEERLKKLIKGPEQHVLKPKAAS---KMVVSELKEELDAQGL-PTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 288 g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~---~~~A~~l~~~M~~~Gi-p~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+...... +..+...- ...|. ..+|..+++.. +. |.. ..+..|-..+...|+.++|...
T Consensus 298 --~~~~~~~~-~~~l~~~~---------~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 298 --GDVIYLSE-FEFLKSLY---------LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAY 361 (383)
T ss_dssp --TCHHHHHH-HHHHHHHH---------TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CCHHHHHH-HHHHHHHH---------hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111111 22222211 13344 56666666654 55 333 5777889999999999998743
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.83 E-value=0.00099 Score=70.37 Aligned_cols=236 Identities=8% Similarity=-0.008 Sum_probs=155.2
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCC-CCC-CHHHHHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAG-RMAT----TFHFNHLLSCQATCGIPEVAFATFENMEY--GEDY-MKP-DTETYNCVIQ 75 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G-v~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~g-i~P-d~~tyn~LI~ 75 (670)
+...|++++|+..|++....- -.++ ..+|+.|-..|...|+++.|...|++... ...+ ..+ ...+|+.+=.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 467899999999999887531 1133 45778888899999999999998887652 0111 111 3567888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc---CCCcccccCCCC
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE---GGTKVLHNEGNF 149 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g---~~~~v~~~~g~~ 149 (670)
.|...| +.++|++.|.+..... .+-.+ ...+|..+-.+|...|++++|.+.|....... ..+..
T Consensus 191 ~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 260 (378)
T 3q15_A 191 NYDDFK---HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL------- 260 (378)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-------
T ss_pred HHHHhC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-------
Confidence 999999 7788888887765410 11111 23567888889999999999999999887621 00111
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc--
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL-- 227 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~-- 227 (670)
+.++..+-..|.+.|+.++|...|++..+......... +...+.. +...+...+.
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~-----------------l~~ly~~~~~~~ 317 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF------YKELFLF-----------------LQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC------HHHHHHH-----------------HHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHH-----------------HHHHHhCCCcHH
Confidence 12788899999999999999999998766432211111 1111111 1112234444
Q ss_pred -HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 228 -TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 228 -~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
..++..+++.... .|+. . .+...+...|...|+.++|...|+....
T Consensus 318 ~~~~al~~~~~~~~---~~~~--~---~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKKNL---HAYI--E---ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTC---HHHH--H---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---hhHH--H---HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777766322 1222 1 1112456888999999999999987753
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.74 E-value=0.001 Score=66.18 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=122.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAY 77 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay 77 (670)
..+.+.|++++|+..|++..... |+ ...+..+-..|.+.|++++|...|++... ...-.|. ...|..+-.+|
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHHHHHHHH
Confidence 35678999999999999998752 33 56778888899999999999999999874 1111223 45677777788
Q ss_pred HH--------cCCcccHHHHHHHHHHhHhccCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 005912 78 TR--------AESYDRVQDVAELLGMMVEDHKRLQPNV-KTY-----------------ALLVECFTKYCAVTEAIRHFR 131 (670)
Q Consensus 78 ~k--------~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty-----------------~~LL~a~ak~g~~d~A~~lf~ 131 (670)
.+ .| +.++|+..|.+.... .|+. ... -.+-..|.+.|+++.|...|+
T Consensus 100 ~~~~~~~~~~~~---~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 100 YKLSPPYELDQT---DTRKAIEAFQLFIDR----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHCCCTTSCCH---HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcccccccch---hHHHHHHHHHHHHHH----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88 88 899999999998872 3432 222 445677889999999999999
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHc----------CCHHHHHHHHHHHhhCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE----------GRIIELLEALEAMAKDN 180 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~----------G~~eeA~~vf~~M~~~g 180 (670)
.+.+....... .+..+..+-.+|.+. |++++|...|+...+..
T Consensus 173 ~~l~~~p~~~~------~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 173 AVFDAYPDTPW------ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHCTTSTT------HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCch------HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99875432211 122677788888866 89999999999988764
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.72 E-value=0.015 Score=60.50 Aligned_cols=277 Identities=10% Similarity=-0.057 Sum_probs=164.7
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV---- 107 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~---- 107 (670)
+-..+...|++++|...+++... ... ..+. .+++.+-..|...| +.++|...|.+....... .++.
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~-~~~-~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~ 93 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALE-ELP-PGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQ-HDVWHYAL 93 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TCC-TTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCC-CCchhHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHh-cCcHHHHH
Confidence 33456678999999999998663 221 2222 25667777888899 788888888876541011 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC-Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN-FGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPV 183 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~-~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i 183 (670)
.++..+-..+...|++++|...+.......... .+. .|. +++.+-..|...|++++|...+++........
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ-----HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 345667778889999999999999877532100 000 011 66778888999999999999999876543221
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhH-HHHHHH
Q 005912 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPM-ETSFKQ 262 (670)
Q Consensus 184 ~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI-e~lv~~ 262 (670)
.+.... .++..+... +...|..++|..+++......-.++. +..+...+ ......
T Consensus 169 ~~~~~~--~~~~~la~~---------------------~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 169 QPQQQL--QCLAMLIQC---------------------SLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIY 224 (373)
T ss_dssp CGGGGH--HHHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHH
T ss_pred CcHHHH--HHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 222111 123222222 35567889999888876432111111 01122211 112244
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh----CCCCC
Q 005912 263 RCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA----QGLPT 338 (670)
Q Consensus 263 ~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~ 338 (670)
+...|+.+.|..++.......... +......+..+-..+. ..|+.++|..+++.... .|.+.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la~~~~-------------~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQI-------------LLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 778999999999998875432110 0001111111112222 45778889888887643 34332
Q ss_pred H--HHHHHHHHHHHHhCChhhhhcC
Q 005912 339 D--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 339 d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
. ..+..+-.++...|+.++|...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3 3666677788899999988753
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.69 E-value=0.0019 Score=67.49 Aligned_cols=164 Identities=15% Similarity=0.032 Sum_probs=118.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-----CHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-----DTETYNCVIQA 76 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-----d~~tyn~LI~a 76 (670)
..|...|++++|++++.+-...|- .-+...+-.++..|.+.|+++.|.+.|++|.+ ..| +-.+...|..+
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHHHHHHHHH
Confidence 457788999999999998765543 23677888999999999999999999999984 356 25566666666
Q ss_pred HHH---cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc---CCCCc
Q 005912 77 YTR---AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN---EGNFG 150 (670)
Q Consensus 77 y~k---~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~---~g~~p 150 (670)
++. .|. +..+|+.+|+++.. -.|+..+-..+++++.+.|++++|.++++.+.+.-.. +-.. ....|
T Consensus 184 ~v~l~~g~~--~~q~A~~~f~El~~----~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~--~~~k~~~~p~~~ 255 (310)
T 3mv2_B 184 YIKFATNKE--TATSNFYYYEELSQ----TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS--VEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHTCS--TTTHHHHHHHHHHT----TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH--TTTCHHHHSSHH
T ss_pred HHHHHhCCc--cHHHHHHHHHHHHH----hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--ccccccCCCCCH
Confidence 433 332 68899999999976 2477666677777999999999999999977653100 0000 01123
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
++.-.+|..+...|+ +|.+++.++.+..
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 366555666666776 8999999998875
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.67 E-value=0.0022 Score=61.06 Aligned_cols=138 Identities=10% Similarity=-0.000 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..+..+-..|...|++++|...|++.. .|+...|..+-..|.+.| +.++|+..|.+... .. ..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~--~~-~~~~~~~ 74 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILK---NMTEAEKAFTRSIN--RD-KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hC-ccchHHH
Confidence 345566677889999999999999886 678999999999999999 78899999999876 22 3357889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc--cCC--CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH--NEG--NFG---DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~--~~g--~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
..+-.+|.+.|++++|.+.|....+......... ..| ..| .+|..+-..|.+.|++++|...|+...+..
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987543221000 000 111 278889999999999999999999987765
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.64 E-value=0.0026 Score=64.93 Aligned_cols=218 Identities=10% Similarity=-0.018 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP- 105 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P- 105 (670)
.|+-....|...|++++|...|++.... ..+-.++ ..+|+.+-..|.+.| +.++|+..|.+-.... .|-.+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444566788999999999999876520 1121122 578999999999999 7888888887765410 11000
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 106 NVKTYALLVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
-..+|+.+-..|... |++++|...|+..........-. .....+|+.+-..|.+.|++++|...|+...+.... .
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~ 191 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-N 191 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-C
Confidence 145788888999996 99999999999887632110000 000116888999999999999999999998876532 1
Q ss_pred Cch-HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHH
Q 005912 185 PRA-MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQR 263 (670)
Q Consensus 185 p~~-~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~ 263 (670)
+.. ......|..+.. .+...|..++|...|+..... .|+.....-+..+..+...|
T Consensus 192 ~~~~~~~~~~~~~lg~---------------------~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGL---------------------CQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTTGGGHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH---------------------HHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHH
Confidence 111 000001222221 135567899999999887652 24321110111222333444
Q ss_pred H--hcCCHHHHHHHHHHH
Q 005912 264 C--LEDGKKYHRKLLRTL 279 (670)
Q Consensus 264 ~--~~G~~e~A~~Lf~~M 279 (670)
. ..+++++|+..|+.+
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 3 456677887777544
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.63 E-value=0.0014 Score=76.50 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN- 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd- 106 (670)
+...|+.|=..|.+.|++++|...|++..+ +.| +...|+.|=..|.+.| +.++|+..|++..+ +.|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~----l~P~~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIR----ISPTF 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCC
Confidence 366889999999999999999999999763 245 4788999999999999 89999999999877 4565
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
...|..+-.+|.+.|++++|.+.|+...+.... .+.+|+.|-..|.+.|++++|...|++..+.+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---------FADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 688999999999999999999999998875321 12289999999999999999999999987754
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.60 E-value=0.0027 Score=62.00 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=117.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTR 79 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k 79 (670)
..+.+.|++++|+..|+++....- .|. ...+..+-.+|.+.|++++|...|++... ...-.+.. ..|-.+-.+|.+
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCcHHHHHHHHHHHHHh
Confidence 357789999999999999987421 122 35677788999999999999999999873 11112222 234434444443
Q ss_pred ------------------cCCcccHHHHHHHHHHhHhccCCCCCCHH-HH-----------------HHHHHHHHHcCCH
Q 005912 80 ------------------AESYDRVQDVAELLGMMVEDHKRLQPNVK-TY-----------------ALLVECFTKYCAV 123 (670)
Q Consensus 80 ------------------~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty-----------------~~LL~a~ak~g~~ 123 (670)
.| +.++|+..|.+..+ ..|+.. ++ -.+-..|.+.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQ---QARAAFSDFSKLVR----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHC--------------CCH---HHHHHHHHHHHHHT----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhhhhccchhhcCcH---HHHHHHHHHHHHHH----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 34 78999999999986 235432 21 2344567899999
Q ss_pred HHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 124 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 124 d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.|...|+.+.+..+..... ++.+..+..+|.+.|+.++|...|+.+...+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~------~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQAT------RDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCcCCCcc------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999999998753322111 1268889999999999999999999988875
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.58 E-value=0.029 Score=58.97 Aligned_cols=305 Identities=8% Similarity=-0.039 Sum_probs=174.4
Q ss_pred HHhcCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHH--HcCChHHHH---------HHHHHchhCCCCCCC-C-H
Q 005912 5 DCKAGDHSNALEIAYEMEAA--GR--MATTFHFNHLLSCQA--TCGIPEVAF---------ATFENMEYGEDYMKP-D-T 67 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~--Gv--~Pd~~tyn~LI~~ya--k~G~~e~A~---------~lf~~M~~~~~gi~P-d-~ 67 (670)
+.+.+++++|..++++.... .+ .+++..|-.|+..-. -.+.+..+. ..++.+.. .. .| + .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~--~~-~~~~~~ 98 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET--PQ-KKLTGL 98 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG--GG-HHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc--cC-CCCccH
Confidence 37889999999999987653 22 234444455544311 112222222 56666541 00 11 1 1
Q ss_pred -HHHHH--HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 68 -ETYNC--VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 68 -~tyn~--LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
..|-. .=..+...| +.++|+..|.+.... ..-.+| ..+|..+-..|...|+++.|...+..........
T Consensus 99 l~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQK---EYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 11111 222345678 788999999988752 111233 4577888889999999999999998877531110
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
.-. ......+++.+=..|...|++++|...|++..+..... .+....+.++..+-..
T Consensus 175 ~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~-------------------- 231 (378)
T 3q15_A 175 PLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANS-------------------- 231 (378)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--------------------
T ss_pred CCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--------------------
Confidence 000 00001178889999999999999999998765421110 1111111223333222
Q ss_pred HHHcCCcHHHHHHHHHHhccCC---CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHH
Q 005912 221 YISEGGLTGERKRWVPRRGKTP---LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVR 297 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~~g---i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~ 297 (670)
+...|..++|...|+...... ..|.. ..++ ..+...|.+.|+.++|..+|++.....-.. +.+....
T Consensus 232 -y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~--- 301 (378)
T 3q15_A 232 -YDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL----FGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYKE--- 301 (378)
T ss_dssp -HHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHHH---
T ss_pred -HHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHH---
Confidence 355678888888887765410 11221 1222 245588899999999999999887654331 1122222
Q ss_pred HHHHHHHccCCCcccccccccCC---HHHHHHHHHHHHhCCC-CCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 298 VEERLKKLIKGPEQHVLKPKAAS---KMVVSELKEELDAQGL-PTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 298 ~l~~l~k~~~~p~~~~L~~~~g~---~~~A~~l~~~M~~~Gi-p~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+..+-. ..+. ..+|..+++. .+. +.. ..+..+-..|...|+.++|...
T Consensus 302 ~~~~l~~ly~---------~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 302 LFLFLQAVYK---------ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp HHHHHHHHHS---------SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHh---------CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2222332211 2333 5566666655 444 332 5677888999999999998754
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.57 E-value=0.00071 Score=63.39 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=114.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH-HHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a-y~k~g 81 (670)
..+.+.|++++|+..|++..+. -+-+...+..+-..|.+.|++++|...|++... ..|+...+..+... +.+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHHHHhhc
Confidence 3577899999999999886643 123577888999999999999999999999863 23444433332111 12222
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
...+|+..|.+..+ +.| +...+..+-.++...|++++|...|..+.+..+.+.- +..+..+...|
T Consensus 89 ---~~~~a~~~~~~al~----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~a~~~l~~~~ 154 (176)
T 2r5s_A 89 ---AESPELKRLEQELA----ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-------GEVKKTFMDIL 154 (176)
T ss_dssp ---TSCHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-------THHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-------HHHHHHHHHHH
Confidence 12246788888776 346 4788888999999999999999999999875432210 12788999999
Q ss_pred HHcCCHHHHHHHHHHHh
Q 005912 161 CREGRIIELLEALEAMA 177 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~ 177 (670)
...|+.++|...|+...
T Consensus 155 ~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHCSSCHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHH
Confidence 99999999999998654
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.55 E-value=0.0018 Score=72.63 Aligned_cols=153 Identities=11% Similarity=-0.036 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++++|+..|++..+. -.-+...|..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.| +.+
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g---~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LH-PGHPEAVARLGRVRWTQQ---RHA 74 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TS-TTCHHHHHHHHHHHHHTT---CHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHCC---CHH
Confidence 47889999999987754 123578899999999999999999999999872 21 335788999999999999 789
Q ss_pred HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc---
Q 005912 88 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE--- 163 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~--- 163 (670)
+|+..|++..+ +.| +...|..+-.+|.+.|++++|.+.|+...+..... +.++..+...|.+.
T Consensus 75 ~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 75 EAAVLLQQASD----AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---------PYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhcc
Confidence 99999999877 234 46789999999999999999999999988753221 22788899999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 005912 164 GRIIELLEALEAMAKDN 180 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~g 180 (670)
|+.++|...|++..+.+
T Consensus 142 g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999999988765
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.49 E-value=0.0014 Score=67.03 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=122.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCC-CHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKP-DTETYNCVI 74 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~P-d~~tyn~LI 74 (670)
..|...|++++|+..|.+.... |-.+. ..+|+.+-..|.+.|++++|...|++.... ..|-.+ -..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577889999999999876542 32222 568899999999999999999999886520 111000 145788899
Q ss_pred HHHHHc-CCcccHHHHHHHHHHhHhccCCCC-C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 QAYTRA-ESYDRVQDVAELLGMMVEDHKRLQ-P-N-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ~ay~k~-g~~~~~~eAl~lf~eM~~~~~gi~-P-d-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..|... | +.++|+..|.+-.....+.. + . ..+|..+-..|.+.|++++|...|+............. + ...
T Consensus 125 ~~~~~~lg---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~-~~~ 199 (292)
T 1qqe_A 125 EILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ-W-SLK 199 (292)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG-G-GHH
T ss_pred HHHHHhhc---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc-H-HHH
Confidence 999996 9 78899999988765100100 0 0 35788899999999999999999999987543321110 0 000
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|..+..+|...|++++|...|+...+.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 14677788899999999999999987654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.47 E-value=0.00094 Score=69.73 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 14 Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi-~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
|+..|++....+ .++..++..+-..|...|++++|.+++.+-. ..+- .-+...+-.++..|.+.| +.+.|.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALLNN---NVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 566677666554 5666777788899999999999999999875 2222 236788999999999999 89999999
Q ss_pred HHHhHhccCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 93 LGMMVEDHKRLQP-----NVKTYALLVECFTK--YC--AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 93 f~eM~~~~~gi~P-----d~~Ty~~LL~a~ak--~g--~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
|..|.+ ..| +..+...|..++.. .| +...|..+|+++...... .. +-..|+.++.+.
T Consensus 159 l~~~~~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~--------~~~lLln~~~~~ 224 (310)
T 3mv2_B 159 FDNYTN----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WK--------TQLGLLNLHLQQ 224 (310)
T ss_dssp HHHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HH--------HHHHHHHHHHHH
T ss_pred HHHHHh----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cc--------cHHHHHHHHHHc
Confidence 999987 467 36677777777443 34 899999999998764321 00 334555689999
Q ss_pred CCHHHHHHHHHHHhh
Q 005912 164 GRIIELLEALEAMAK 178 (670)
Q Consensus 164 G~~eeA~~vf~~M~~ 178 (670)
|++++|...++.+.+
T Consensus 225 g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 225 RNIAEAQGIVELLLS 239 (310)
T ss_dssp TCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997655
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.45 E-value=0.0041 Score=63.95 Aligned_cols=164 Identities=10% Similarity=0.026 Sum_probs=110.5
Q ss_pred cCChHHHHHHHHHHHHc------CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCC-CCHHHHHHHH
Q 005912 8 AGDHSNALEIAYEMEAA------GRMATT----FHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMK-PDTETYNCVI 74 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~------Gv~Pd~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~-Pd~~tyn~LI 74 (670)
.|++.+|.+++++-.+. +..++. ..|+.....|...|++++|...|.+.... ..+-. .-..+|+.+-
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888766542 123442 36778888899999999999999876520 11101 1146889999
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhcc--CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDH--KRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..|.+.| +.++|+..|.+-.... .| .|. ..+|..+-..|.. |++++|...|...........-. ....
T Consensus 84 ~~~~~~g---~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQ---RMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---RQAA 155 (307)
T ss_dssp HHHHHTT---CGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---HHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---hHHH
Confidence 9999999 5556666666543310 11 122 3577788888888 99999999999877532110000 0001
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|+.+-..|.+.|++++|...|++..+.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 17888999999999999999999987653
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.45 E-value=0.0028 Score=64.69 Aligned_cols=154 Identities=13% Similarity=-0.000 Sum_probs=118.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g~ 82 (670)
.+.+.|++++|+.+|++..+.. .-+...+..|-..|.+.|++++|..+|++... ..|+......... .+.+.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~- 199 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQA- 199 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhc-
Confidence 4678899999999999987642 23677888999999999999999999999873 2466554333333 255556
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
...+|+..|.+... ..| +...+..+-..|...|++++|...|..+.+...... .+..+..|...|.
T Consensus 200 --~~~~a~~~l~~al~----~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~-------~~~a~~~l~~~~~ 266 (287)
T 3qou_A 200 --ADTPEIQQLQQQVA----ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA-------DGQTRXTFQEILA 266 (287)
T ss_dssp --TSCHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG-------GGHHHHHHHHHHH
T ss_pred --ccCccHHHHHHHHh----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-------cchHHHHHHHHHH
Confidence 45568888888876 245 567888899999999999999999999988643221 0127999999999
Q ss_pred HcCCHHHHHHHHHHH
Q 005912 162 REGRIIELLEALEAM 176 (670)
Q Consensus 162 k~G~~eeA~~vf~~M 176 (670)
..|+.++|...|+.-
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 999999999888764
No 94
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.44 E-value=0.0015 Score=61.36 Aligned_cols=163 Identities=11% Similarity=-0.047 Sum_probs=113.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCC-CCHHHHHHHHHHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMK-PDTETYNCVIQAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~-Pd~~tyn~LI~ay~k~g 81 (670)
+...|++++|.++++.+... ......+++.+-..|...|++++|...|++... ...+.. ....+|+.+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35689999999966655432 223567888999999999999999999988762 012222 23567888888999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC--C-CcccccCCCCchHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-N----VKTYALLVECFTKYCAVTEAIRHFRALQNYEG--G-TKVLHNEGNFGDPL 153 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~--~-~~v~~~~g~~pdty 153 (670)
+.++|...|.+....... .+ + ..++..+-..+...|++++|...+........ . +... ..++
T Consensus 81 ---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~ 150 (203)
T 3gw4_A 81 ---NWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI------ACAF 150 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH------HHHH
Confidence 788888888876541011 12 2 34577788889999999999999998775311 0 0000 0056
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 154 SLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 154 n~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+-..|.+.|++++|...|++..+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7888899999999999999987644
No 95
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.42 E-value=0.0035 Score=53.16 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|.+.|++++|..+|+++.. . ...+..+|..+...|.+.| +.++|+.+|.++.. . -..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--L-DPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH--h-CCccHHH
Confidence 56788888999999999999999999873 1 1346788999999999999 78899999999887 2 2346778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+..+...|.+.|++++|...|..+.+.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 889999999999999999999998774
No 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.42 E-value=0.009 Score=64.25 Aligned_cols=287 Identities=12% Similarity=-0.037 Sum_probs=164.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh------CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEY------GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 99 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~------~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~ 99 (670)
.......||.|=..|...|+.++|.+.|++-.. +...-....++|+.+-..|...| +.++|...|++....
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g---~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG---RLSDVQIYVDKVKHV 123 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHH
Confidence 344567899999999999999999999987531 01112334689999999999999 778888888765431
Q ss_pred c---CC-CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH---HHHcCCHHHH
Q 005912 100 H---KR-LQP-NVKTYALLVECFTKY--CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA---LCREGRIIEL 169 (670)
Q Consensus 100 ~---~g-i~P-d~~Ty~~LL~a~ak~--g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a---y~k~G~~eeA 169 (670)
. .+ ..+ ...+|+.+-.++.+. +++++|...|+...+..+. .|+.++.+... +...|+.++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---------~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---------NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCchHHHHH
Confidence 0 11 122 346676666666654 4689999999998875321 12244444433 4566788889
Q ss_pred HHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCccc
Q 005912 170 LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVG 249 (670)
Q Consensus 170 ~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~ 249 (670)
+..|+...+.+. .+.. .+..+...+. ......+..++|..+++..... .|+. .
T Consensus 195 l~~~~~al~l~p---~~~~----~~~~l~~~~~-----------------~~~~~~~~~~~a~~~~~~al~~--~~~~-~ 247 (472)
T 4g1t_A 195 IDPLRQAIRLNP---DNQY----LKVLLALKLH-----------------KMREEGEEEGEGEKLVEEALEK--APGV-T 247 (472)
T ss_dssp HHHHHHHHHHCS---SCHH----HHHHHHHHHH-----------------HCC------CHHHHHHHHHHHH--CSSC-H
T ss_pred HHHHHHHhhcCC---cchH----HHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHHHh--CccH-H
Confidence 998887766542 2221 1222211110 0112334566777777765442 2332 1
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC---Ccccccc---cccCCHHH
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG---PEQHVLK---PKAASKMV 323 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~---p~~~~L~---~~~g~~~~ 323 (670)
.++. .+...|.+.|+.++|...|.......-. +...+..+-..+...... ..+.... ......+.
T Consensus 248 ~~~~----~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 248 DVLR----SAAKFYRRKDEPDKAIELLKKALEYIPN-----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHcCchHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Confidence 2333 3447889999999999999988765322 222222221111111000 0000000 11224566
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 324 VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 324 A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|...++......-....++..+-..+...|++++|..
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 7777777665443223567777888889999998864
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.40 E-value=0.0052 Score=58.39 Aligned_cols=124 Identities=10% Similarity=-0.053 Sum_probs=102.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+..|.+. +.|+...|..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.|
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~lg~~~~~~~-- 85 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RD-KHLAVAYFQRGMLYYQTE-- 85 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT--
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcc--
Confidence 567889999999999876 467899999999999999999999999999773 11 346788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCC------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 84 DRVQDVAELLGMMVEDHKR------------LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~g------------i~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.++|+..|.+..+...+ ..| +...|..+-.+|.+.|++++|...|....+..
T Consensus 86 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 -KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp -CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 788999999998772110 112 23678889999999999999999999988753
No 98
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.38 E-value=0.0066 Score=58.65 Aligned_cols=141 Identities=11% Similarity=0.019 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN- 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd- 106 (670)
.|...|..+-..|.+.|++++|...|++... ..-.++...|..+-.+|.+.| +.++|+..|.+... +.|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~p~~ 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK--LTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIK----KNYNL 75 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----TTCSH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHH----hCcch
Confidence 3567778888889999999999999999872 222378888888999999999 78999999999877 3454
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
..+|..+-.+|...|++++|...|+...+........ ......+|..+=..|.+.|++++|...|+...+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI--EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 5678889999999999999999999988754321100 0000014777778888999999999999998765
No 99
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.30 E-value=0.0053 Score=55.39 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+-..|...|++++|...|++... . ...+..+|..+-..|.+.| +.++|+..|.+... .. ..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--L-NPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIE--LD-KKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hC-cccHHH
Confidence 34567777888899999999999998763 1 1336888999999999999 78899999998876 21 235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS--LYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn--~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
|..+-.+|.+.|++++|...|........... ..+. .+...+.+.|++++|...+....
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDK---------DAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888999999999999999999887533211 1343 34444778899999999887653
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.25 E-value=0.0045 Score=52.49 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=83.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|.++.... ..+..++..+...|.+.|++++|..+|+++.. . ...+..+|..+...|.+.|
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~- 91 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQG- 91 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34678899999999999999999999999873 2 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFT 118 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a 118 (670)
+.++|...|.++.. +.|+ ...+..+-..+.
T Consensus 92 --~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 92 --DYDEAIEYYQKALE----LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHH
Confidence 78999999999877 2343 444444444443
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.18 E-value=0.017 Score=57.23 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
+...+-.+-..|.+.|++++|...|+.+.. . .|+ ...|..+-.+|.+.| +.++|+..|........+ .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~--~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~-~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT--Y--GRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQI-D 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG--G--CSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTT-C
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h--CCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCC-C
Confidence 456666677788899999999999999873 1 233 678888899999999 788999999998872111 1
Q ss_pred CC-HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHccCCCcccccCCCCchHH--------------HHHHHHHH
Q 005912 105 PN-VKTYALLVECFTK--------YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--------------SLYLRALC 161 (670)
Q Consensus 105 Pd-~~Ty~~LL~a~ak--------~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty--------------n~LI~ay~ 161 (670)
|. ...+..+-.++.+ .|++++|...|..+.+..+..... .... ..+-..|.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4556677777878 999999999999998754322111 0011 45577889
Q ss_pred HcCCHHHHHHHHHHHhhCC
Q 005912 162 REGRIIELLEALEAMAKDN 180 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~g 180 (670)
+.|++++|...|+...+..
T Consensus 160 ~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHHHC
Confidence 9999999999999988764
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.12 E-value=0.011 Score=50.97 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..+...|..+-..|.+.|++++|...|++... . ...+...|..+-..|...| +.++|+..|.+... .. ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~ 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--R-NPKDAKLYSNRAACYTKLL---EFQLALKDCEECIQ--LE-PTF 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--T-CTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHH--HC-TTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH--hC-CCc
Confidence 34677888899999999999999999999872 2 1336888999999999999 78899999999876 21 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
..+|..+-.+|.+.|++++|.+.|....+..... +..+..+-..|.+.|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC---------KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---------THHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhc
Confidence 7888889999999999999999999987643211 115666666666554
No 103
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.11 E-value=0.021 Score=57.86 Aligned_cols=168 Identities=7% Similarity=-0.060 Sum_probs=117.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHchhC-CCCCCCC--HHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMAT-T----FHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPD--TETYNCV 73 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~-~~gi~Pd--~~tyn~L 73 (670)
+..+...|++++|++.+.+.....-..+ . ..+..+-..|...|++++|...|++.... .....+. ..+|+.+
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3467889999999999988776432211 1 22344556677889999999999887520 1111222 5589999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
-..|...| +.++|+..|.+.... ....|+ ..+|..+-..|.+.|++++|...+............ ...
T Consensus 162 g~~y~~~~---~~~~A~~~~~kal~~-~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---~~~ 234 (293)
T 2qfc_A 162 ANIYAENG---YLKKGIDLFEQILKQ-LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---MAL 234 (293)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---CSS
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHH-HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---HHH
Confidence 99999999 788999999887621 011222 258889999999999999999999987753211000 001
Q ss_pred CchHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 005912 149 FGDPLSLYLRALCREGRIIEL-LEALEAM 176 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~~eeA-~~vf~~M 176 (670)
.+.+|..+-..|.+.|+.++| ...|+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 122788889999999999999 7767654
No 104
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.11 E-value=0.0082 Score=51.27 Aligned_cols=120 Identities=9% Similarity=-0.053 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+...|..+-..|...|+++.|...|++... . ...+...|..+...|...| +.++|+..|.+... . -..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~ 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIE--L-NPANAVYFCNRAAAYSKLG---NYAGAVQDCERAIC--I-DPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHhh---chHHHHHHHHHHHh--c-CccCHH
Confidence 456677888889999999999999998763 1 1346788999999999999 78899999999876 2 123477
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
.|..+..+|.+.|++++|...|....+..... +..+..+...|.+.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDN---------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHhcC
Confidence 88888899999999999999999988753221 22677777777777654
No 105
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.11 E-value=0.014 Score=59.14 Aligned_cols=169 Identities=8% Similarity=-0.040 Sum_probs=118.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAG-RMATT----FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNC 72 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~G-v~Pd~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~ 72 (670)
+..+...|++++|..++++..... ..|+. ..|+.+...|...|++++|...|++... ...-.++ ..+|+.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHH
Confidence 456788999999999999988642 22332 2344566777778899999999999873 1111233 447999
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhcc--C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDH--K-RLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~-gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
+-..|...| +.++|+..|.+..... . +..|.. .+|..+-..|.+.|++++|...+............ .-.
T Consensus 161 lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---~~~ 234 (293)
T 3u3w_A 161 IANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---MAL 234 (293)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---CTT
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc---HHH
Confidence 999999999 7889999998876310 1 222222 47888999999999999999999987753211100 000
Q ss_pred CchHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 005912 149 FGDPLSLYLRALCREGR-IIELLEALEAMA 177 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~-~eeA~~vf~~M~ 177 (670)
.+.+|..+=..|.+.|+ .++|...|++..
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 12278888889999995 699988887653
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.06 E-value=0.0082 Score=54.09 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=95.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|+++.|+..|.+..... ..+..++..+-..|...|++++|...|++... . ...+...|..+-..|.+.|
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~~a~~~~~~~- 95 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L-DKKYIKGYYRRAASNMALG- 95 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHhc-
Confidence 35678999999999999987642 33688889999999999999999999999773 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYAL--LVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~--LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+.++|+..|.+.... .| +...+.. +...+.+.|++++|...+.....
T Consensus 96 --~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 96 --KFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 789999999998772 33 3444533 33447788999999998877654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.04 E-value=0.071 Score=51.62 Aligned_cols=171 Identities=9% Similarity=0.033 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV- 107 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~- 107 (670)
...+-.+-..|.+.|++++|...|+++.. ...-.|. ...+..+-.+|.+.| +.++|+..|.+..+. .|+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~----~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDN-RYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRL----NPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCCC
Confidence 34455566778899999999999999873 1111222 357888889999999 788999999998772 3432
Q ss_pred ---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHccCCCcccccCCCCchHH-------------
Q 005912 108 ---KTYALLVECFTK------------------YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL------------- 153 (670)
Q Consensus 108 ---~Ty~~LL~a~ak------------------~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty------------- 153 (670)
..+-.+-.++.+ .|+.++|...|+.+.+..+.... ++
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~---------a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY---------TTDATKRLVFLKDRL 146 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT---------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh---------HHHHHHHHHHHHHHH
Confidence 133333333433 57899999999999875332211 22
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHH
Q 005912 154 ----SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229 (670)
Q Consensus 154 ----n~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~ 229 (670)
-.+-..|.+.|++++|...|+.+.+.. |+.-...-.+..+. ..+.+.|..+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~l~---------------------~~~~~~g~~~ 201 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY----PDTQATRDALPLME---------------------NAYRQMQMNA 201 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTSHHHHHHHHHHH---------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC----cCCCccHHHHHHHH---------------------HHHHHcCCcH
Confidence 234556889999999999999988764 22211000122222 2346778999
Q ss_pred HHHHHHHHhccCC
Q 005912 230 ERKRWVPRRGKTP 242 (670)
Q Consensus 230 ~a~~lf~~m~~~g 242 (670)
+|...++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999887653
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.02 E-value=0.013 Score=59.37 Aligned_cols=132 Identities=10% Similarity=0.004 Sum_probs=95.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC-CCC----
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL-QPN---- 106 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi-~Pd---- 106 (670)
.+..+.+.|++++|..++++... .....|+. ..|+.+...|...| +.++|+..|.+... ... .++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~al~--~~~~~~~~~~~ 154 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKV---DYEYCILELKKLLN--QQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH--TCCCCSCTTHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHccc---CHHHHHHHHHHHHH--HhcccccHHHH
Confidence 46778899999999999999873 22333442 23334555566666 68899999999876 222 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+|+.+-.+|...|++++|...|....+.-... .+..+ .+|+.+-..|.+.|++++|...+++..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-----HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3368999999999999999999999987421000 00011 1788999999999999999999987654
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.93 E-value=0.011 Score=56.96 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=108.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHHcCChHHHHHHHHHchhCCCCCCC-
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNH----------------LLSCQATCGIPEVAFATFENMEYGEDYMKP- 65 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~----------------LI~~yak~G~~e~A~~lf~~M~~~~~gi~P- 65 (670)
.+.+.|++++|+..|++.... .|+ ...|.. +-..|.+.|++++|...|++... +.|
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~ 86 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ----KAPN 86 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC
Confidence 467889999999999998764 343 344555 78889999999999999999773 234
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHccCCCcc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAV--TEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~--d~A~~lf~~M~~~g~~~~v 142 (670)
+...|..+-..|...| +.++|+..|.+..+ +.| +..+|..+-.+|...|.. ..+...+..... +.
T Consensus 87 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~- 154 (208)
T 3urz_A 87 NVDCLEACAEMQVCRG---QEKDALRMYEKILQ----LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----PT- 154 (208)
T ss_dssp CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----CC-
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----CC-
Confidence 6788999999999999 88999999999987 346 467777777777655543 334444443321 11
Q ss_pred cccCCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pd--tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|. .+..+=.++...|++++|...|++..+..
T Consensus 155 -------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 155 -------KMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp -------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred -------chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 11 22233344566899999999999987653
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.004 Score=71.89 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=125.1
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEA-------AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 78 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~-------~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~ 78 (670)
...|++++|++.|++... .....+...|..+-..|.+.|++++|...|++... . -.-+...|+.+=.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~-~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--R-VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--c-CcchHHHHHHHHHHHH
Confidence 467899999999999871 11234567888888999999999999999999873 1 1336788999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
+.| +.++|+..|++..+ +.| +...|..+-.+|.+.|++++ .+.|+...+..... +..|..+-
T Consensus 479 ~~g---~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---------~~a~~~lg 541 (681)
T 2pzi_A 479 LTG---DYDSATKHFTEVLD----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---------ISAAFGLA 541 (681)
T ss_dssp HHT---CHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC---------HHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch---------HHHHHHHH
Confidence 999 88999999999877 345 46788889999999999999 99999988753221 12788999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC
Q 005912 158 RALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|.+.|++++|...|++..+.
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHcCCHHHHHHHHHhhccc
Confidence 9999999999999999987554
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.82 E-value=0.0057 Score=62.83 Aligned_cols=167 Identities=7% Similarity=-0.061 Sum_probs=115.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCCCC--HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPD--TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~Pd--~~tyn~L 73 (670)
..|...|++++|+..|.+..+. |-.+ -..+|+.+-..|.+.|++++|...|++... ...| .|. ..+|+.+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 4577789999999999876542 2111 145788888999999999999999987542 0111 122 4677888
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
-..|.+ | +.++|+..|.+-.... .+-.+ -..+|..+-..|.+.|++++|...|.............. ...
T Consensus 123 g~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~ 195 (307)
T 2ifu_A 123 GKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP---TCY 195 (307)
T ss_dssp HHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHH
T ss_pred HHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh---HHH
Confidence 888877 8 7889998988765410 01000 146788889999999999999999998876321110000 000
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.++..+...|...|++++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 156677778888899999999999987
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.82 E-value=0.015 Score=49.53 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=87.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+...|+++.|+..|++..... ..+...|..+-..|...|++++|...|+.... . ...+...|..+-..|.+.|
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~- 94 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--I-DPAYSKAYGRMGLALSSLN- 94 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--c-CccCHHHHHHHHHHHHHhC-
Confidence 45778999999999999988652 34678889999999999999999999999773 1 1335788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCA 122 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~ 122 (670)
+.++|...|.+... +.| +...+..+..++.+.|+
T Consensus 95 --~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 --KHVEAVAYYKKALE----LDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp --CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHhc
Confidence 78999999999876 234 56677777777776665
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.74 E-value=0.0079 Score=55.69 Aligned_cols=122 Identities=10% Similarity=0.072 Sum_probs=95.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH-HHHcCCc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTRAESY 83 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a-y~k~g~~ 83 (670)
+...|++++|+..|....... ..+...|..+-..|...|++++|...|++... .. ..+...|..+-.. |.+.|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~la~~l~~~~~-- 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LR-GENAELYAALATVLYYQAS-- 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH-CSCHHHHHHHHHHHHHHTT--
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CCCHHHHHHHHHHHHHhcC--
Confidence 456788999999998877642 34678899999999999999999999999763 11 2367788888888 77888
Q ss_pred ccH--HHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 84 DRV--QDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 84 ~~~--~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+. ++|+..|.+... +.| +...+..+-..|...|++++|...|....+..
T Consensus 94 -~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 -QHMTAQTRAMIDKALA----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp -TCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -CcchHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 55 899999999877 234 46788888899999999999999999988754
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.66 E-value=0.014 Score=54.63 Aligned_cols=126 Identities=6% Similarity=-0.112 Sum_probs=88.2
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECF 117 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ 117 (670)
...|++++|..+++.+. . .......+|+.+-..|...| +.++|+..|.+..... .+..| ...++..+-..|
T Consensus 3 ~~~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--A-HPATASGARFMLGYVYAFMD---RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHH--T-STTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46799999999555555 2 11345788999999999999 7888888888765410 12222 346678888899
Q ss_pred HHcCCHHHHHHHHHHHHHcc--CC--CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 118 TKYCAVTEAIRHFRALQNYE--GG--TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g--~~--~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...|++++|...+....... .+ +... ..+++.+-..|...|++++|...|++...
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAA------SANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998877531 11 1000 11688888999999999999999987654
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.66 E-value=0.026 Score=48.43 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc
Q 005912 63 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 141 (670)
Q Consensus 63 i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~ 141 (670)
...+...|..+-..|.+.| +.++|+..|.+... ..| +..+|..+..+|...|++++|...|....+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 3556788999999999999 78899999999876 234 6788899999999999999999999998875321
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 142 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 142 v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.+|..+-..|.+.|++++|...|+...+..
T Consensus 83 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 83 -------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 12278889999999999999999999887654
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.65 E-value=0.043 Score=61.26 Aligned_cols=151 Identities=9% Similarity=-0.111 Sum_probs=101.6
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYC 121 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g 121 (670)
.|++++|...|++... . -.-+...|..+-..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|...|
T Consensus 2 ~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--H-RPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLA----LHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHT----TSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC
Confidence 4788999999998762 1 1235788999999999999 78999999999876 345 4788899999999999
Q ss_pred CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHH
Q 005912 122 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 201 (670)
Q Consensus 122 ~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~ 201 (670)
++++|.+.|+...+.... .+..|..+-..|.+.|++++|...|+...+..- .+.. .+..+...+
T Consensus 72 ~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~----~~~~l~~~~ 135 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPE---------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EEPY----ITAQLLNWR 135 (568)
T ss_dssp CHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHHH
Confidence 999999999998875322 122788999999999999999999999877642 1211 133332222
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 005912 202 IEPLQEEAELGYEIDYIARYISEG---GLTGERKRWVPRRGK 240 (670)
Q Consensus 202 ~~ll~~m~~~G~~pd~i~~~~~~~---g~~~~a~~lf~~m~~ 240 (670)
... |..++|...++...+
T Consensus 136 ---------------------~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 136 ---------------------RRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp ---------------------HHTTCCTTHHHHHHHHHHHHH
T ss_pred ---------------------HHhhccccHHHHHHHHHHHHh
Confidence 444 788888888887755
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.63 E-value=0.022 Score=59.52 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----------------HHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----------------TETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----------------~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
+...|+.+-..|.+.|++++|...|++... +.|+ ...|+.+-.+|.+.| +.++|+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~ 218 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 356778888899999999999999998763 1333 589999999999999 78999999
Q ss_pred HHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHH-H
Q 005912 93 LGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL-L 170 (670)
Q Consensus 93 f~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA-~ 170 (670)
|.+..+ +.| +...|..+-.+|...|++++|...|....+..... +.++..+-..|.+.|+.++| .
T Consensus 219 ~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 219 CNKALE----LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---------KAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 234 67889999999999999999999999988753221 22788899999999999988 4
Q ss_pred HHHHHHh
Q 005912 171 EALEAMA 177 (670)
Q Consensus 171 ~vf~~M~ 177 (670)
.+|..|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666664
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.63 E-value=0.03 Score=56.95 Aligned_cols=134 Identities=12% Similarity=0.009 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
..+...+..+-..+.+.|++++|...|++... ..| +...+..+-..|.+.| +.++|..+|++... ..|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~----~~p 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPL----QDQ 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCG----GGC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCch----hhc
Confidence 34456677777888999999999999999763 134 5678999999999999 89999999998865 457
Q ss_pred CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 106 NVKTYALLV-ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 106 d~~Ty~~LL-~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+........ ..+...+..+.|...++......+. + ++.+..+-..|...|++++|...|....+..
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~--------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-D--------AALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-C--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-c--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 655333322 3366778888899999888765322 1 2278889999999999999999999998875
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.61 E-value=0.16 Score=48.85 Aligned_cols=115 Identities=16% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR- 79 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G----~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k- 79 (670)
|...+++++|+..|++..+.| +...++.|=..|.. + ++++|...|++... .-+...++.|=..|..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-----~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-----AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTCG
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcC
Confidence 334555555555555555543 33444444444444 4 55555555555542 1234444444444433
Q ss_pred ---cCCcccHHHHHHHHHHhHhccCCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 005912 80 ---AESYDRVQDVAELLGMMVEDHKRLQPN---VKTYALLVECFTK----YCAVTEAIRHFRALQN 135 (670)
Q Consensus 80 ---~g~~~~~~eAl~lf~eM~~~~~gi~Pd---~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~ 135 (670)
.+ +..+|+.+|.+-.+ . .|. ...+..|-..|.. .++.++|...|.....
T Consensus 99 ~g~~~---d~~~A~~~~~~A~~--~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 99 QAGAT---DVAHAITLLQDAAR--D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp GGSSC---CHHHHHHHHHHHTS--S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CCCcc---CHHHHHHHHHHHHH--c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33 45555555555543 1 221 3444455555554 5555555555555544
No 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.034 Score=46.37 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+...|..+...+...| +.++|+..|.+... . -..+...+..+..+|.+.|++++|...+....+....
T Consensus 3 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVG---NIDDALQCYSEAIK--L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcc---cHHHHHHHHHHHHH--H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------
Confidence 4567788888888888 78899999998876 2 1236777888888899999999999999988775321
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-..|.+.|++++|...|+...+.+
T Consensus 71 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 71 ---WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 12278888889999999999999999887654
No 121
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.59 E-value=0.021 Score=50.42 Aligned_cols=140 Identities=14% Similarity=-0.019 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
.+++.+-..|...|++++|...|++... ...-.++ ..+|+.+-..|...| +.++|+..|.+........ ++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~ 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQL-KD 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHhCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh-CC
Confidence 4677888889999999999999988762 0000122 257888899999999 7888988888765410011 12
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 ----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..++..+-..|...|++++|.+.+...........-. ...+.++..+-..|...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch---HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567788888999999999999998877531100000 00011788888999999999999999987654
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.55 E-value=0.0049 Score=56.34 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=102.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
+...|++++|+..|...... .| +...+-.|-..|.+.|++++|...|++... +.| +..+|..+-..|.+.|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~- 79 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERDPKAHRFLGLLYELEE- 79 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT-
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcC-
Confidence 44567889999888776532 23 234455677889999999999999999763 234 6789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH-HHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRH-FRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~l-f~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+..|.+..+ +.|+ ..+|..+-..|.+.|+.+++.+. ++...+..+. .|.+|+..-..+
T Consensus 80 --~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~---------~~~~~~l~~~ll 144 (150)
T 4ga2_A 80 --NTDKAVECYRRSVE----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG---------SPAVYKLKEQLL 144 (150)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT---------CHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHH
Confidence 88999999999877 4564 67888999999999999876665 4666664321 122666666666
Q ss_pred HHcCC
Q 005912 161 CREGR 165 (670)
Q Consensus 161 ~k~G~ 165 (670)
.+.|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 55553
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.51 E-value=0.013 Score=48.65 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC---C
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP---N 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P---d 106 (670)
...|..+-..|.+.|++++|...|++... . ...+...|..+-..|.+.| +.++|+..|.+..+ . .| +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~--~--~~~~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--L-DPEESKYWLMKGKALYNLE---RYEEAVDCYNYVIN--V--IEDEYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--T--SCCTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH--h--Ccccch
Confidence 34566677778888999999999988762 1 1335778888888888888 78889999988876 2 34 4
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccC
Q 005912 107 VKTYALLVECFTKY-CAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~ 138 (670)
...+..+..+|.+. |++++|.+.+........
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77888888888899 999999999988876543
No 124
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.05 Score=47.67 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
.+...|..+-..+.+.| +.++|+.+|.+..+ +.|+ ...|..+-.+|.+.|++++|...+....+....
T Consensus 26 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCG---DYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG- 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-
Confidence 46778888888888888 78899999998876 4576 577888888889999999999999888764321
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-.+|.+.|++++|...|+...+..
T Consensus 98 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 98 --------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 12277788888999999999999999887654
No 125
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.49 E-value=0.043 Score=59.75 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHhhCCC
Q 005912 109 TYALLVECFTKYC---AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE----GRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 109 Ty~~LL~a~ak~g---~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~----G~~eeA~~vf~~M~~~gi 181 (670)
.+..|-..|.+.| +.++|.+.|......+..... .+..|-..|... +++++|...|+... .|.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~ 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---------RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC
Confidence 6667777777888 888888888888776543321 234555566444 68899999999887 543
Q ss_pred CCCCchHH-HHhH-H----HHHHHHHHHHHHHHHHcCCCHHH--HHHHHHcC----CcHHHHHHHHHHhccCCCCCCccc
Q 005912 182 PVPPRAMI-LSRK-Y----RTLVSSWIEPLQEEAELGYEIDY--IARYISEG----GLTGERKRWVPRRGKTPLDPDAVG 249 (670)
Q Consensus 182 ~i~p~~~i-~~~t-y----~~ll~a~~~ll~~m~~~G~~pd~--i~~~~~~~----g~~~~a~~lf~~m~~~gi~Pd~d~ 249 (670)
+.... ++.. | ..-...++..+....+.|...-. +-.++..+ ...++|..+|+... .| ++
T Consensus 248 ---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g---~~-- 318 (452)
T 3e4b_A 248 ---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GR---EV-- 318 (452)
T ss_dssp ---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TT---CH--
T ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CC---CH--
Confidence 33321 1111 1 01123344555665666632211 11223322 26777777777665 22 22
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
..+..|=..+..+.....+.++|..+|+.-...|..
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 222222211111112234777788877777766654
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.47 E-value=0.026 Score=48.06 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--- 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--- 106 (670)
...|..+-..|...|+++.|...|++... . ...+...|..+-..|.+.| +.++|+..|.+.........++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--L-DPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhccccchhHHH
Confidence 34677777888889999999999988763 1 1346778888888888888 7888888888876521111223
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 -VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 -~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
..+|..+..+|.+.|++++|...|......
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 677888888899999999999999888774
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.42 E-value=0.078 Score=61.21 Aligned_cols=194 Identities=10% Similarity=0.025 Sum_probs=127.1
Q ss_pred HHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC---------CCCC--------
Q 005912 5 DCKAGDHSNAL-EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY---------MKPD-------- 66 (670)
Q Consensus 5 y~k~G~~~~Al-~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~g---------i~Pd-------- 66 (670)
+-+.|+.+.|. .+|..-... ++.+...|-.++..+-+.|+++.|+.+|+.+.. .. -.|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~--~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID--RIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhhhhhhccCcchhhhhhh
Confidence 34567788886 888887653 444666677788888889999999999998872 10 0142
Q ss_pred ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 67 ----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-R-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 67 ----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~-g-i~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
...|-..+....+.| ..+.|..+|..... . + ..+...+..+.|.-.+ .++.+.|..+|+...+.-
T Consensus 430 ~~~~~~vWi~y~~~erR~~---~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~--- 500 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQ---GLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYF--- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHH---
T ss_pred ccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHC---
Confidence 236778887777777 68899999998876 3 2 2233333333333222 345899999999887741
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
...+..|..+++.....|+.+.|..+|+....... ++.. ...+...+ ..
T Consensus 501 ------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~--~~~~------~~~lw~~~-----------------~~ 549 (679)
T 4e6h_A 501 ------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS--DSHL------LKMIFQKV-----------------IF 549 (679)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS--STTH------HHHHHHHH-----------------HH
T ss_pred ------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--CHHH------HHHHHHHH-----------------HH
Confidence 12233678888888889999999999998877643 1111 11111111 12
Q ss_pred HHHcCCcHHHHHHHHHHhccC
Q 005912 221 YISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+-...|..+.+..+.+++.+.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 234557778888888888653
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.043 Score=45.72 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...+..+-..|...|++++|...|+.... . ...+...|..+-..|.+.| +.++|...|.+... . .| +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~--~~~~~ 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--L-DPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVD--L--KPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--H--CTTCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--H-CCCcHHHHHHHHHHHHhhc---cHHHHHHHHHHHHH--h--CcccH
Confidence 345677788888899999999999998762 1 1236778888888888888 78889999988876 2 33 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
..|..+..+|.+.|++++|...+....+.
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 78888888999999999999999888764
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.41 E-value=0.088 Score=47.95 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
.+...|..+-..|.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+....
T Consensus 9 ~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---- 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARK---EYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---- 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Confidence 35667888888888999 78899999998876 234 6778888889999999999999999988875322
Q ss_pred ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 144 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-..|.+.|++++|...|+...+..
T Consensus 78 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 78 -----YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12278888999999999999999999887654
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.40 E-value=0.035 Score=57.93 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=98.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT--------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd--------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
..|.+.|++++|+..|++.....-... ...|+.+-.+|.+.|++++|...|++... .. ..+..
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~-p~~~~ 231 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD-SNNEK 231 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCcHH
Confidence 357789999999999999887532211 58899999999999999999999999873 11 34688
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEA-IRHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A-~~lf~~M~~ 135 (670)
.|..+-.+|.+.| +.++|+..|.+..+ +.| +...+..+-.++.+.|+.+++ ..++..|..
T Consensus 232 a~~~lg~~~~~~g---~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVN---DFELARADFQKVLQ----LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 88999999999877 345 567888888899999999888 445665543
No 131
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.39 E-value=0.042 Score=50.99 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
+..+-..|.+.|++++|...|++... ..| +...|..+-..|.+.| +.++|+..|+.... ..|+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~----~~p~~~~~~ 77 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETK---QFELAQELLATIPL----EYQDNSYKS 77 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCG----GGCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhh----ccCChHHHH
Confidence 44556678899999999999998762 133 5788999999999999 89999999998865 334443332
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a-~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+... +...+....+...|+...+..+. .+..+..+-..|.+.|++++|...|+...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPD---------NFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 22111 22222333567888877764322 12278889999999999999999999998875
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.39 E-value=0.015 Score=53.72 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH-HH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC-FT 118 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a-~a 118 (670)
...|++++|...|+.... . -..+...|..+-..|...| +.++|+..|.+... +.| +...|..+..+ |.
T Consensus 21 ~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--A-NPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQ----LRGENAELYAALATVLYY 90 (177)
T ss_dssp C-----CCCCHHHHHHHH--H-CCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HHCSCHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--h-CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 456788889888888652 1 1346789999999999999 78899999999876 234 56677777777 77
Q ss_pred HcCCH--HHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 119 KYCAV--TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 119 k~g~~--d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
..|++ ++|...|.......... +..|..+-..|.+.|++++|...|+...+...
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNE---------ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCcchHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 99998 99999999988753221 22788889999999999999999999888753
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.38 E-value=0.046 Score=50.41 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+=..|.+.| +.++|+..|..... +.| +...|..+-.+|...|++++|...|+...+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~----- 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKG---RIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN----- 102 (151)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----
Confidence 3456777788888999 78899999999887 345 5778888999999999999999999998875422
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|..|..+=.+|.+.|++++|...|+...+..
T Consensus 103 ----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 ----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12378889999999999999999999987754
No 134
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.37 E-value=0.021 Score=48.72 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=81.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~ 78 (670)
..|...|++++|+..|.+..... ..+...+..+-..|...|++++|...|++.........++ ..+|..+-..|.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 45778999999999999988753 3467888999999999999999999999876300011222 778999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 116 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a 116 (670)
+.| +.++|...|.+... +.|+......+-.+
T Consensus 91 ~~~---~~~~A~~~~~~~~~----~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 91 KEE---KYKDAIHFYNKSLA----EHRTPDVLKKCQQA 121 (131)
T ss_dssp HTT---CHHHHHHHHHHHHH----HCCCHHHHHHHHHH
T ss_pred Hhc---cHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 999 78899999999877 34665555444433
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.37 E-value=0.027 Score=46.60 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+...|..+-..|.+.| +.++|+..|.+... .. ..+..+|..+-.+|...|++++|...|....+....
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------ 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAG---NYTESIDLFEKAIQ--LD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------ 72 (112)
T ss_dssp STTGGGGHHHHHHSSC---CHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------
T ss_pred cHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH--hC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------
Confidence 3456778888888999 78899999999876 21 235778889999999999999999999999875322
Q ss_pred CCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCRE-GRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~-G~~eeA~~vf~~M~~~g 180 (670)
...+.+|..+-..|.+. |++++|.+.|.......
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 -EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 00123788999999999 99999999999988765
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.33 E-value=0.13 Score=51.78 Aligned_cols=136 Identities=8% Similarity=-0.019 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC-CCCC--
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPN-- 106 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~g-i~Pd-- 106 (670)
...+..|...|++++|...+..... .....++. ..+..+...|...| +.++|+..|.+....... ..+.
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKV---DYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHTSS---CHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4566778899999999999987663 11111211 22344555566777 788999999987651011 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY---EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~---g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+|+.+-..|...|++++|...|...... ....... ...+|+.+-..|.+.|++++|...|++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~-----~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-----DVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 458899999999999999999999988732 1110000 002788899999999999999999987654
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.27 E-value=0.33 Score=46.53 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
+|+..|.+..+.| +...+..|=..|...+++++|...|++... . -+...++.|=..|...|.-.+.++|+++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~---g~~~a~~~lg~~y~~~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA--Q---GDGDALALLAQLKIRNPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--T---TCHHHHHHHHHHTTSSTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 5778888888775 778888888999999999999999999883 3 3667777777777764322358899999
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cC
Q 005912 93 LGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EG 164 (670)
Q Consensus 93 f~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G 164 (670)
|.+-.+ .+ +...+..|-..|.. .+++++|...|......+.... .+..++.|=..|.. .+
T Consensus 76 ~~~A~~--~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~-------~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 76 AEKAVE--AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA-------AVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp HHHHHH--TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH-------HHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHH--CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc-------hHHHHHHHHHHHHcCCCCCC
Confidence 999877 43 56677777777776 8899999999999877543100 02277888888888 88
Q ss_pred CHHHHHHHHHHHhhC
Q 005912 165 RIIELLEALEAMAKD 179 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~ 179 (670)
+.++|...|+.-.+.
T Consensus 144 d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL 158 (212)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998776
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.26 E-value=0.059 Score=48.96 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+-..+.+.| +.++|+..|..... +.| +...|..+-.+|...|++++|...|+........
T Consensus 20 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----- 87 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSG---XYEDAHXVFQALCV----LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX----- 87 (148)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred hHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----
Confidence 4556777778888999 78899999998876 234 6777888888999999999999999998875322
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|.+|..+-.+|...|++++|...|+...+..
T Consensus 88 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 ----EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12278888899999999999999999877654
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.26 E-value=0.09 Score=45.70 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 64 ~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
..+...|..+-..|.+.| +.++|+..|.+.... . ..+...|..+-.+|...|+++.|...|....+....
T Consensus 6 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---- 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGR---KYPEAAACYGRAITR--N-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---- 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhh--C-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----
Confidence 456788888888888888 788888888887662 1 234677888888888999999999999888775322
Q ss_pred ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 144 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+.+|..+-..|.+.|++++|...|+...+.
T Consensus 76 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1227888888899999999999999877654
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.078 Score=46.40 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi 103 (670)
.+...+..+-..|.+.|++++|...|++... +.|+ ...|..+-.+|.+.| +.++|+..|.+... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~----~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLE---DYDKAETEASKAIE----K 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHh----h
Confidence 3677888889999999999999999999872 3566 688899999999999 78899999998876 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 104 QP-NVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 104 ~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.| +...|..+-.+|...|++++|...|......
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34 5778888889999999999999999988774
No 141
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.21 E-value=0.0087 Score=54.63 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=93.3
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF 117 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ 117 (670)
|...|++++|...|..... ..| +...|-.|=..|.+.| +.++|++.|.+..+ +.| +..+|..+-.+|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYIN----VQERDPKAHRFLGLLY 75 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Confidence 3456788999999988761 123 2445666778899999 78899999999887 345 578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH-HHHHhhCC
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA-LEAMAKDN 180 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v-f~~M~~~g 180 (670)
.+.|++++|...|....+..+. .+++|..+-..|.+.|+.++|.+. ++...+..
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT---------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHcCchHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 9999999999999998875321 123788999999999999877665 57666543
No 142
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.21 E-value=0.24 Score=57.06 Aligned_cols=221 Identities=7% Similarity=0.008 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF-ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 91 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~-~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~ 91 (670)
.+..+|++.... +.-+...|-.....+-+.|+.+.|. .+|++.. . .+..+...|-..+...-+.| +.+.|..
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~-~~P~s~~Lwl~~a~~ee~~~---~~e~aR~ 399 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--Q-CIPNSAVLAFSLSEQYELNT---KIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--H-HCTTCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHHhC---CHHHHHH
Confidence 445666666543 3336667777777788889999996 9999876 2 23446667888888888999 7888999
Q ss_pred HHHHhHhccCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-cCCCcccccCCCC
Q 005912 92 LLGMMVEDHKR---------LQPN------------VKTYALLVECFTKYCAVTEAIRHFRALQNY-EGGTKVLHNEGNF 149 (670)
Q Consensus 92 lf~eM~~~~~g---------i~Pd------------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~-g~~~~v~~~~g~~ 149 (670)
+|+.... .. -.|+ ..+|...+....+.|.++.|+.+|....+. +...
T Consensus 400 iyek~l~--~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------- 468 (679)
T 4e6h_A 400 TILSCID--RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------- 468 (679)
T ss_dssp HHHHHHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---------
T ss_pred HHHHHHH--HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---------
Confidence 9998875 21 0142 235777777777889999999999998875 2111
Q ss_pred chHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcH
Q 005912 150 GDPLSLYLRALCRE-GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLT 228 (670)
Q Consensus 150 pdtyn~LI~ay~k~-G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~ 228 (670)
+..|-.....--+. ++.+.|..+|+...+.- +.+..+ +. .+++ +....|..
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~~----w~----~y~~-----------------fe~~~~~~ 520 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGEY----IN----KYLD-----------------FLIYVNEE 520 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHHH----HH----HHHH-----------------HHHHHTCH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchHH----HH----HHHH-----------------HHHhCCCH
Confidence 11333322233344 45899999999887752 111111 11 2211 12334688
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
+.|+.+|+......-.|......|.. .+.--.+.|+.+.+.++.+.|...-
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~----~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQK----VIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHH----HHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999987653212111133433 3355577899999999999998764
No 143
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.20 E-value=0.12 Score=49.44 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=50.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+-.+|.+.|++++|...|....+..+. .++.|..+-..|...|++++|...|+...+.+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN---------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778899999999999999998875322 12288999999999999999999999988765
No 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.19 E-value=0.043 Score=48.47 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTY 110 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty 110 (670)
.|+-+=..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+..+ +.| +...|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~p~~~~a~ 84 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--R-DPENAILYSNRAACLTKLM---EFQRALDDCDTCIR----LDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHhhHHHhhc---cHHHHHHHHHHHHH----hhhhhhHHH
Confidence 344455567777777777777777552 1 1235667777777777777 66777777777665 233 35667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..+-.+|...|++++|.+.|+...+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777777766543
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.18 E-value=0.079 Score=46.08 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
.+...|..+-..|.+.|++++|...|+.... .. ..+...|..+-.+|.+.| +.++|+..|.+.... .| +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~----~p~~ 76 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RN-PLVAVYYTNRALCYLKMQ---QPEQALADCRRALEL----DGQS 76 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hC-cCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHh----Cchh
Confidence 4678888899999999999999999998763 11 335788999999999999 788999999998772 34 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
...|..+-.+|...|+++.|...|......
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 778899999999999999999999988764
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.15 E-value=0.036 Score=51.14 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
+...+..+-..|.+.|++++|...|++... +.| +...|..+=.+|.+.| +.++|+..|.+... +.| +
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~----l~P~~ 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFA----LGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHc---cHHHHHHHHHHHHh----hCCCC
Confidence 344667777889999999999999999873 234 6888999999999999 88999999999987 345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
...|..+-.+|.+.|++++|...|+...+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6788889999999999999999999988753
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.15 E-value=0.077 Score=47.31 Aligned_cols=98 Identities=8% Similarity=-0.029 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...+..+-..+.+.| +.++|+..|..... ..| +...|..+-.+|.+.|++++|...|.........
T Consensus 18 ~~~~~~~a~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 84 (142)
T 2xcb_A 18 LEQLYALGFNQYQAG---KWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------ 84 (142)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHc---cHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------
Confidence 445666677788889 78899999999876 234 5677888888999999999999999998875322
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|..|..+-.+|...|++++|...|+...+..
T Consensus 85 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 ---EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12278888899999999999999999877654
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.11 Score=54.97 Aligned_cols=165 Identities=8% Similarity=-0.047 Sum_probs=112.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-T---------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d---------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
.+.+.|++++|++.|.......-.. + ...++.|...|.+.|++++|..+|..... -.+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~-~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE-YMMQFAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH-HHHTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHccch
Confidence 4678999999999999988643221 1 12367889999999999999999988763 11112222
Q ss_pred H---HHHHHHHHHH-HcCCcccHHHHHHHHHHhHhcc--CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 68 E---TYNCVIQAYT-RAESYDRVQDVAELLGMMVEDH--KRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 68 ~---tyn~LI~ay~-k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
. ....++..+. ..| ..+.|..++.+..... .+..+. ..++..+...|...|++++|..++......-...
T Consensus 92 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPD---SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHHCSCCS---CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 2 2222333332 334 6778888877654210 233333 4577889999999999999999999877532111
Q ss_pred cccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 141 KVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 141 ~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...+ .+|+.++..|...|++++|..+++....
T Consensus 169 ------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 169 ------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp ------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0111 1899999999999999999999987654
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.07 E-value=0.055 Score=49.37 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...|..+-..|.+.|++++|...|++... .. .-+...|..+-.+|.+.| +.++|+..|.+... +.| +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~----~~p~~~ 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IA-PANPIYLSNRAAAYSASG---QHEKAAEDAELATV----VDPKYS 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCH
Confidence 456778888899999999999999999763 11 236888999999999999 78899999999877 234 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..|..+-.+|.+.|++++|...|....+..
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999988754
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.93 E-value=0.074 Score=50.15 Aligned_cols=158 Identities=8% Similarity=-0.047 Sum_probs=99.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--------------HHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--------------TETYN 71 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--------------~~tyn 71 (670)
...|.++++.+.|+.-... .......+..+-..|.+.|++++|...|++... ...-.|+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555321111 011344567777788899999999999998773 1111221 27888
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
.+-.+|.+.| +.++|+..|..... . -..+...|..+-.+|...|++++|...|....+..... +.
T Consensus 93 ~la~~~~~~~---~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~ 157 (198)
T 2fbn_A 93 NLATCYNKNK---DYPKAIDHASKVLK--I-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---------LD 157 (198)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------HH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------HH
Confidence 8999999999 78899999999877 2 12357888889999999999999999999988753221 22
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHhhCC
Q 005912 152 PLSLYLRALCREGRIIELL-EALEAMAKDN 180 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~-~vf~~M~~~g 180 (670)
++..+-..+.+.|+..++. ..|..|...+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6778888888877777766 5666665444
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.92 E-value=0.061 Score=48.87 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...+..+-..|.+.|++++|...|+.... . -..+...|..+-.+|.+.| +.++|+..|.+... +.| +.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----l~p~~~ 89 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--L-DHYDSRFFLGLGACRQAMG---QYDLAIHSYSYGAV----MDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCT
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--c-CcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCc
Confidence 345667777889999999999999998763 1 1347788999999999999 88999999999877 334 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..|..+-.+|...|++++|...|....+..
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 788888999999999999999999887743
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.088 Score=45.46 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~ 108 (670)
...|..+-..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+..+ +.| +..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~----~~p~~~~ 73 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--R-APEDARGYSNRAAALAKLM---SFPEAIADCNKAIE----KDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCcHH
Confidence 34566677788889999999999988763 1 1335788899999999999 78899999988876 234 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.|..+-.+|...|++++|...|....+.
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888999999999999999887764
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.13 Score=44.30 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...|..+-..+.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+.....
T Consensus 4 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKS---DWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence 456777778889999 78899999999876 234 57889999999999999999999999988753221
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.+|..+-.+|...|++++|...|+...+.+
T Consensus 72 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 ----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2278889999999999999999999876643
No 154
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.80 E-value=0.022 Score=65.73 Aligned_cols=141 Identities=9% Similarity=-0.085 Sum_probs=107.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g 81 (670)
..|.+.|++++|+..|++..+.. .-+...|+.+=..|.+.|++++|...|++... +.| +...|+.+-.+|.+.|
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcC
Confidence 35778999999999999988642 23677888888999999999999999999763 234 5688999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
++ ++ +..|++..+ +.| +...|..+-.+|.+.|++++|.+.|+...+..... +..|..+..+|
T Consensus 516 ~~---~~-~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~~~~~~ 578 (681)
T 2pzi_A 516 NT---DE-HKFYQTVWS----TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF---------TTARLTSAVTL 578 (681)
T ss_dssp CC---CT-TCHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH---------HHHHHHHHHHT
T ss_pred Ch---HH-HHHHHHHHH----hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc---------HHHHHHHHHHH
Confidence 54 46 778888766 235 56788999999999999999999999876542211 11677777777
Q ss_pred HHcCC
Q 005912 161 CREGR 165 (670)
Q Consensus 161 ~k~G~ 165 (670)
...|.
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 66555
No 155
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.74 E-value=0.18 Score=44.25 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=83.6
Q ss_pred CCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 63 MKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 63 i~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
+.|+ ...|...=..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.+.|++++|...|....+....
T Consensus 8 inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK- 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-
Confidence 4454 356777778899999 78899999999876 234 6788999999999999999999999998875322
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.+|..+-.+|...|++++|...|+...+..
T Consensus 80 --------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 80 --------FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 12278899999999999999999999987754
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.67 E-value=0.038 Score=48.69 Aligned_cols=130 Identities=8% Similarity=0.005 Sum_probs=92.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCC-CCHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMK-PDTETYNCVI 74 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~-Pd~~tyn~LI 74 (670)
..|...|++++|+..|.+.....- .++ ..+++.+-..|...|++++|...|++.... ..+-. ....+|..+-
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 356788999999999988764311 112 247788888999999999999999986520 01111 1156788888
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
..|...| +.++|...|.+..... .+-.+ ...++..+-..|...|++++|.+.+....+
T Consensus 97 ~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 97 NTYTLLQ---DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHh---hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8899999 7888888887765310 11111 245677888899999999999999988765
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.60 E-value=0.098 Score=49.30 Aligned_cols=122 Identities=14% Similarity=-0.016 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CC---C-----------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGR-MA---T-----------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv-~P---d-----------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
.|.+.|++++|+..|.+.....- .| . ...|..+-.+|.+.|++++|...|+.... . -..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~-~p~~~~ 123 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I-DKNNVK 123 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-STTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CcccHH
Confidence 56788999999999999886421 12 1 27788888899999999999999999873 1 134678
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAI-RHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~-~lf~~M~~ 135 (670)
.|..+-.+|...| +.++|+..|.+... +.| +...+..+-.++...++..++. ..|..|..
T Consensus 124 ~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 124 ALYKLGVANMYFG---FLEEAKENLYKAAS----LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHcc---cHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999 78899999999876 345 4567777777777777666665 44554443
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.59 E-value=0.081 Score=54.29 Aligned_cols=123 Identities=11% Similarity=-0.034 Sum_probs=95.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~ 78 (670)
..|...|++++|.++|+.+...+ |+....-.+-..|.+.+++++|...|+.... .|+. ..+..+=.++.
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCcccHHHHHHHHHHHHH
Confidence 45788999999999999887643 6544555566689999999999999986652 2332 35777778899
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.| +.++|+..|++-.. ....|. .......-.++.+.|+.++|..+|+.+....
T Consensus 183 ~LG---~~~eAl~~l~~a~~--g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLA---LFTEAERRLTEAND--SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTT---CHHHHHHHHHHHHT--STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCC---CHHHHHHHHHHHhc--CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999 89999999999876 444364 2355666678889999999999999998753
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.59 E-value=0.011 Score=50.99 Aligned_cols=86 Identities=17% Similarity=0.016 Sum_probs=62.9
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 7 KAGDHSNALEIAYEMEAAGR--MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv--~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
..|++++|+..|++..+.+. .-+...|..|-..|.+.|++++|...|++... .. .-+...|..+-.+|.+.|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g--- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QF-PNHQALRVFYAMVLYNLG--- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT---
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCchHHHHHHHHHHHHcC---
Confidence 46788889999988887541 22456778888888999999999999998763 11 234778888888899999
Q ss_pred cHHHHHHHHHHhHh
Q 005912 85 RVQDVAELLGMMVE 98 (670)
Q Consensus 85 ~~~eAl~lf~eM~~ 98 (670)
+.++|+..|.+...
T Consensus 76 ~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 76 RYEQGVELLLKIIA 89 (117)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 78889998888766
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.54 E-value=0.12 Score=46.11 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKT 109 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~T 109 (670)
..+..+-..|.+.|++++|...|+.... .. ..+...|..+-.+|.+.| +.++|+..|..... +.| +...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~ 88 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LD-HYDARYFLGLGACRQSLG---LYEQALQSYSYGAL----MDINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCTHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hC-CccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCcHH
Confidence 3455566778899999999999999763 11 236788888989999999 78899999999877 234 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
|..+-.+|...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888889999999999999999988764
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.49 E-value=0.12 Score=44.24 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+-..+.+.| +.++|+..|...... .|+. ..+..+-.+|.+.|++++|...|....+.......
T Consensus 7 ~~a~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----- 74 (129)
T 2xev_A 7 NVAFDALKNG---KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----- 74 (129)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-----
T ss_pred HHHHHHHHhC---CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-----
Confidence 3445667788 788999999988762 2432 46777888899999999999999998875432110
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.++..+-.+|.+.|++++|...|+...+..
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12267788889999999999999999988764
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.49 E-value=0.15 Score=52.25 Aligned_cols=127 Identities=17% Similarity=0.091 Sum_probs=94.6
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYA 111 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~ 111 (670)
+...|...|++++|.++|+.+. .. .|+....-.+-..|.+.+ +..+|+..|..... .|+ ...+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~--~~--~p~~~~~~~~a~l~~~~~---r~~dA~~~l~~a~~-----~~d~~~~~~a~~ 175 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAP--VA--GSEHLVAWMKAVVYGAAE---RWTDVIDQVKSAGK-----WPDKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSC--CT--TCHHHHHHHHHHHHHHTT---CHHHHHHHHTTGGG-----CSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--hc--CCchHHHHHHHHHHHHcC---CHHHHHHHHHHhhc-----cCCcccHHHHHH
Confidence 5567888999999999999987 32 355445555555777888 78899999985544 232 23677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+=.++.+.|++++|+..|+........|... ++....+-.++.+.|+.++|..+|+++...+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~------~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACA------RAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999887432212211 1255667778899999999999999998876
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.40 E-value=0.12 Score=56.84 Aligned_cols=117 Identities=14% Similarity=0.027 Sum_probs=89.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+..|++..+. -.-+...|+.+-..|.+.|++++|...|++..+ . -..+..+|+.+-.+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l-~p~~~~~~~~lg~~~~~~g-- 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L-DKKYIKGYYRRAASNMALG-- 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHHT--
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC--
Confidence 466789999999999988875 233588999999999999999999999999873 2 1235788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPN-VKTYALLVEC--FTKYCAVTEAIRHFR 131 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a--~ak~g~~d~A~~lf~ 131 (670)
+.++|++.|++..+. .|+ ...+..+-.+ +.+.|++++|.++++
T Consensus 89 -~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 -KFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -CHHHHHHHHHHHHHH----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 889999999998762 332 2344444444 888899999999987
No 164
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.31 E-value=1.8 Score=44.57 Aligned_cols=228 Identities=11% Similarity=-0.012 Sum_probs=145.8
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH----
Q 005912 6 CKAGD-HSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCG--IPEVAFATFENMEYGEDYMKPDTETYNCVIQAY---- 77 (670)
Q Consensus 6 ~k~G~-~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G--~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay---- 77 (670)
.+.|. -++|+.+++.+... -|+ ...||.-=..+...| +++++..+++.+.. . ...+...||.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~--~-nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL--D-NEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--H-CTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH--H-CcccHHHHHHHHHHHHHHH
Confidence 34444 46899999888864 343 445666666666677 99999999999873 1 134556676554444
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT--EAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d--~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
...+...+.++++.+++.+.+. -.-|-.+|+.---.+.+.|..+ ++++.+..+.+..+...- .|+-
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~---~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s---------AW~~ 185 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSS---DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS---------AWSH 185 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH---------HHHH
T ss_pred HhccccCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH---------HHHH
Confidence 4441111678999999999872 2347888988888888899888 999999999876543221 5665
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc-H
Q 005912 156 YLRALCREGR------IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL-T 228 (670)
Q Consensus 156 LI~ay~k~G~------~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~-~ 228 (670)
---.+.+.|+ ++++++.++.+...+. ...+. |+-+-.. +.+.|. .
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p--~n~Sa-----W~y~~~l---------------------l~~~~~~~ 237 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCP--QNPST-----WNYLLGI---------------------HERFDRSI 237 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS--SCHHH-----HHHHHHH---------------------HHHTTCCG
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCC--CCccH-----HHHHHHH---------------------HHhcCCCh
Confidence 5455555565 8889999998887763 22221 2221111 122222 3
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
.+...+.......+ .++ ....-.++.+.+.|.+.|+.++|.++++.+...
T Consensus 238 ~~~~~~~~~~~~~~-~~~---~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 238 TQLEEFSLQFVDLE-KDQ---VTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GGGHHHHHTTEEGG-GTE---ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-CCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 33445555544322 011 222233456778999999999999999998763
No 165
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.29 E-value=0.38 Score=52.16 Aligned_cols=193 Identities=6% Similarity=-0.000 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHccCCCccc
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY----CAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~----g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
..+..|-..|.+.|...+..+|++.|..-.+ .| .++...+..|-..|... ++.++|...|+... .+.+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~--- 249 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVS--RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPA--- 249 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTH---
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHH---
Confidence 3788888888888855568899999999887 44 34555545555666544 68999999999876 33221
Q ss_pred ccCCCCchHHHHHHHH-H--HHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCC
Q 005912 144 HNEGNFGDPLSLYLRA-L--CREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGY 213 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~a-y--~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~ 213 (670)
.++.|=.. | ...|++++|...|+.-.+.|. +... .++..|.. -...+...+.... .|.
T Consensus 250 --------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~ 317 (452)
T 3e4b_A 250 --------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GRE 317 (452)
T ss_dssp --------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTC
T ss_pred --------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCC
Confidence 45555554 3 458899999999999888874 3332 22222221 2233444444444 332
Q ss_pred CHHH---HHHHHHc----CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 214 EIDY---IARYISE----GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 214 ~pd~---i~~~~~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
+.. +-.++.. ....++|..+|+.-.+.|. | ..+..|-..+..+.....+..+|..+|..-...|..
T Consensus 318 -~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 318 -VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N----SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T----THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 222 1233333 2378889999998877653 2 222222211122222356888999998888877764
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.24 E-value=0.13 Score=44.76 Aligned_cols=96 Identities=9% Similarity=-0.058 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+..+-..+.+.| +.++|+..|++..+ ..| +...|..+-.++...|++++|...|+...+.....
T Consensus 19 ~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------- 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLA---NLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------- 84 (121)
T ss_dssp CHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 3455566778888 78899999988876 345 56777888888899999999999999887753221
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+..|..+-..|.+.|++++|...|+...+.+
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 85 --IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2278888888999999999999999876643
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.17 E-value=0.3 Score=41.76 Aligned_cols=90 Identities=13% Similarity=0.000 Sum_probs=58.6
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----H
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----V 107 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~ 107 (670)
+-..+.+.|++++|...|+.... . .|+. ..|..+-.+|.+.| +.++|+..|...... .|+ .
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~--~--~p~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~ 76 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE--L--YPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSR----YPTHDKAA 76 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--H--CSSSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTSTTHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--H--CCCCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHH----CCCCcccH
Confidence 34456667777777777777652 1 2222 35666667777777 677777777777652 233 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.++..+-.+|.+.|+.++|...|+.+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666667777788888888877777664
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.23 Score=52.41 Aligned_cols=212 Identities=8% Similarity=-0.090 Sum_probs=125.2
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCC---------------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPD---------------TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 102 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd---------------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~g 102 (670)
..+.+.|++++|.+.|..... ...-..+ ...+..|...|.+.| +.++|.+++...... .+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~---~~~~a~~~~~~~~~~-~~ 86 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLD-KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG---AKDKLREFIPHSTEY-MM 86 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHTHHH-HH
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH-HH
Confidence 346788999999999999874 1111111 134788999999999 788999999887652 11
Q ss_pred CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 103 LQPNVKT----YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 103 i~Pd~~T----y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
-.++..+ .+.+-..+...|..+.+..++............ ......++..|...|...|++++|..+++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2233322 222223334578899999999877642111000 000112788899999999999999999998754
Q ss_pred CCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC--CCCCCcccchhhhhH
Q 005912 179 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT--PLDPDAVGFIYSNPM 256 (670)
Q Consensus 179 ~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~--gi~Pd~d~~ty~~LI 256 (670)
.-......... .-.+..+. ..|...|....|..+++..... .+ +++ +.....+.
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~---------------------~~~~~~~~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~~ 219 (434)
T 4b4t_Q 164 EFKKLDDKPSL-VDVHLLES---------------------KVYHKLRNLAKSKASLTAARTAANSI-YCP-TQTVAELD 219 (434)
T ss_dssp HHTTSSCSTHH-HHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHS-CCC-HHHHHHHH
T ss_pred HHHhcccchhH-HHHHHHHH---------------------HHHHHhCcHHHHHHHHHHHHHHhhcC-CCc-hHHHHHHH
Confidence 32111222111 01122222 3346677888888887765421 11 111 01111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 257 ETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 257 e~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
..+...+...|+.+.|...|.+...
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2233667788999999888876653
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.02 E-value=0.22 Score=54.31 Aligned_cols=130 Identities=10% Similarity=-0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----------------HHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----------------TETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----------------~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
...|+.+-..|.+.|++++|...|++... +.|+ ...|+.+-.+|.+.| +.++|+..|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~ 340 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS----WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence 45677788889999999999999998763 1232 588999999999999 788999999
Q ss_pred HHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHH-H
Q 005912 94 GMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL-E 171 (670)
Q Consensus 94 ~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~-~ 171 (670)
.+..+ +.| +...|..+-.+|.+.|++++|...|....+..... +..|+.+-..+.+.|+.+++. .
T Consensus 341 ~~al~----~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 341 DKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---------KAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh----cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 234 57889999999999999999999999988753211 117889999999999988776 4
Q ss_pred HHHHHhhC
Q 005912 172 ALEAMAKD 179 (670)
Q Consensus 172 vf~~M~~~ 179 (670)
++..|..+
T Consensus 408 ~~~~~f~k 415 (457)
T 1kt0_A 408 IYANMFKK 415 (457)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 56666443
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.85 E-value=0.3 Score=42.76 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VK 108 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~ 108 (670)
.-|=+.|.+.|++++|...|++... +.| +...|+.+=.+|.+.| +.++|++.|.+..+......++ ..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3333444455555555555554431 112 2444555555555555 4445554444443210111111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+|..+-.++...|++++|.+.|....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555444
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.74 E-value=0.32 Score=48.99 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+-..|.+.| +.++|+..|.+... ..| +...|..+-.+|.+.|++++|...+....+.... +
T Consensus 3 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR---KYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-S--- 71 (281)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-C---
T ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-C---
Confidence 3455666666666666 56666667766654 233 4566666666677777777777777666553211 1
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+..|+.+-.+|.+.|++++|...|+...+
T Consensus 72 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 72 -----VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11566666667777777777777766544
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.67 E-value=0.18 Score=44.25 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...|.-|=..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.+.|++++|.+.|....+........
T Consensus 8 A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 78 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQK---DFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-- 78 (127)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--
Confidence 356777778889999 78899999999877 345 47788999999999999999999999887642211000
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+.....+|..+=..|...|++++|.+.|+.-...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0000015666777888999999999999987654
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.57 E-value=0.2 Score=43.68 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYA 111 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~ 111 (670)
-.+-..+.+.|++++|...|++... ..| +...|..+=.+|.+.| +.++|+..|.+..+ +.| +...+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~----l~P~~~~~~~ 89 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENE---KDGLAIIALNHARM----LDPKDIAVHA 89 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 3445667788999999999988763 233 6778888888888888 78889989988876 345 466778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.+-.+|.+.|++++|...|+...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999887753
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.48 E-value=0.096 Score=57.62 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVE 115 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~ 115 (670)
..|.+.|++++|...|++... +.| +..+|+.+-.+|.+.| +.++|+..|.+..+ +.| +..+|..+-.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~----~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIE----LDKKYIKGYYRRAA 82 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----SCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 345678999999999998763 134 5889999999999999 78999999999987 345 5788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH--HHHcCCHHHHHHHHH
Q 005912 116 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA--LCREGRIIELLEALE 174 (670)
Q Consensus 116 a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a--y~k~G~~eeA~~vf~ 174 (670)
+|.+.|++++|.+.|+...+..... +..+..+-.+ |.+.|++++|..+++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHD---------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC---------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988753221 1155556555 888999999999988
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.16 E-value=0.29 Score=54.18 Aligned_cols=132 Identities=5% Similarity=-0.147 Sum_probs=94.9
Q ss_pred HHHcCChHHHHHHHHHchhC-CCCC---CCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc----CCCCCC-HHH
Q 005912 40 QATCGIPEVAFATFENMEYG-EDYM---KPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH----KRLQPN-VKT 109 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~-~~gi---~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~----~gi~Pd-~~T 109 (670)
+-..|++++|..++++.... ..-+ .|+ ..++|.|...|...| +.++|..++.+...-. ..-.|+ ..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g---~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ---AYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 55679999999999876531 1222 233 578999999999999 6778888777654310 122344 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC-Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN-FGD---PLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~-~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
|+.|-..|...|++++|+.++.+...-... . .|. .|+ +.+.|-.++...|.+++|..+|..+++.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~---~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLV---T--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---H--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---H--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877642100 0 111 122 6778888889999999999999998764
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.11 E-value=0.084 Score=45.32 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=67.3
Q ss_pred HcCChHHHHHHHHHchhCCCC--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHH
Q 005912 42 TCGIPEVAFATFENMEYGEDY--MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFT 118 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~g--i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~a 118 (670)
..|++++|...|++.. ..+ -.-+...|..+-..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.
T Consensus 2 ~~g~~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVK----QFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCchHHHHHHHHHHH
Confidence 4588899999999988 332 1224577888999999999 88999999999887 234 4678888999999
Q ss_pred HcCCHHHHHHHHHHHHHcc
Q 005912 119 KYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g 137 (670)
+.|++++|...|.......
T Consensus 73 ~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887753
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.92 E-value=0.54 Score=49.73 Aligned_cols=125 Identities=8% Similarity=-0.027 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhC--C----------CCCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYG--E----------DYMK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~----------~gi~-Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
..|..+-..|.+.|++++|...|++.... . .... -+..+|+.+-.+|.+.| +.++|+..|.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Confidence 44677788899999999999999887610 0 0012 24578899999999999 7889999999988
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHH
Q 005912 98 EDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 171 (670)
Q Consensus 98 ~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~ 171 (670)
+ +.| +...|..+-.+|.+.|++++|...|+...+..... +..+..+-..+.+.++.+++.+
T Consensus 301 ~----~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~---------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 E----IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 345 57888899999999999999999999988753221 1266777777777777766654
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.89 E-value=0.34 Score=52.73 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT--------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd--------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
..|.+.|+++.|+..|.+..+..-... ...|+.+-.+|.+.|++++|...|++... .. ..+..
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~-p~~~~ 352 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD-SANEK 352 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC-CccHH
Confidence 357789999999999998876421111 58888999999999999999999999873 11 33678
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIR-HFRAL 133 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~-lf~~M 133 (670)
.|..+-.+|.+.| +.++|+..|.+..+ +.|+ ...|..+-.++.+.++.+++.+ ++..|
T Consensus 353 a~~~~g~a~~~~g---~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 353 GLYRRGEAQLLMN---EFESAKGDFEKVLE----VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999 78899999999876 4564 4577778888888888776654 34444
No 179
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.78 E-value=0.36 Score=55.51 Aligned_cols=102 Identities=10% Similarity=0.019 Sum_probs=72.0
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 118 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a 118 (670)
....+|+++.|.++.+.+. +...|..|-..+.+.+ +.+.|.++|..+.. |..+...|.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--------~~~~W~~la~~al~~~---~~~~A~~~y~~~~d-----------~~~l~~l~~ 718 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--------AEMKWRALGDASLQRF---NFKLAIEAFTNAHD-----------LESLFLLHS 718 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTC-----------HHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--------cHhHHHHHHHHHHHcC---CHHHHHHHHHHccC-----------hhhhHHHHH
Confidence 3455667777777665444 5678888888888888 77888888887743 445566666
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..|+.+...++-+.....+ -++.-..+|.+.|++++|.+++.++
T Consensus 719 ~~~~~~~~~~~~~~a~~~~--------------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 719 SFNNKEGLVTLAKDAETTG--------------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHcC--------------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6777777666655555533 4677777788888888888888776
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.76 E-value=0.23 Score=54.98 Aligned_cols=130 Identities=7% Similarity=-0.115 Sum_probs=94.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCCCC-HHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA---GRMA----TTFHFNHLLSCQATCGIPEVAFATFENMEYG----EDYMKPD-TETYN 71 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~---Gv~P----d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~----~~gi~Pd-~~tyn 71 (670)
.+-..|++++|+.++++..+. -+-| ...++|.|...|...|++++|..++++.... -..-.|+ ..+||
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999876642 1222 4568899999999999999999999886530 1122455 47799
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhcc---CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDH---KR-LQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~---~g-i~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.|-..|...| +.++|..+|.+-.+-. -| =.|+ ..+.+.+-.++...+.+.+|+.++..+...
T Consensus 398 nLa~~~~~~G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAG---HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6777777776543210 11 1233 345667778888999999999999998764
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.63 E-value=0.72 Score=46.37 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
+...+..+-..|.+.|++++|...|++... ..| +...|..+-.+|.+.| +.++|+..|.+..+ +.| +
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~----~~p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALE----LDGQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTT----SCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCC
Confidence 456677777888889999999999988763 134 6788888888888888 78888888888765 345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
...|..+-.+|...|++++|...|....+.
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677888888888999999999998887764
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.56 E-value=0.14 Score=53.30 Aligned_cols=130 Identities=11% Similarity=-0.043 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH------------------HHHHHHHHHHHcCCcccHHHHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE------------------TYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~------------------tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
..+..+-..|.+.|++++|...|++... +.|+.. .|+.+-.+|.+.| +.++|+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA----YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH----HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 3456666677788889999998888552 245443 7888888999999 67899999
Q ss_pred HHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH-HHHcCCHHHHH
Q 005912 93 LGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA-LCREGRIIELL 170 (670)
Q Consensus 93 f~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a-y~k~G~~eeA~ 170 (670)
|.+..+ +.| +...|..+-.+|...|++++|...|....+..... +..++.|-.. ....+..+++.
T Consensus 253 ~~~al~----~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---------~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 253 CNIVLT----EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---------KAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 998876 235 67889999999999999999999999886543211 1144445444 33456677888
Q ss_pred HHHHHHhhCC
Q 005912 171 EALEAMAKDN 180 (670)
Q Consensus 171 ~vf~~M~~~g 180 (670)
.+|..|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888886553
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.22 E-value=0.49 Score=50.02 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHc--------------CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA--------------GRM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~--------------Gv~-Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
..|.+.|++++|+..|++..+. ... -+...|+.+-.+|.+.|++++|...|++.. ... .-+.
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al--~~~-p~~~ 307 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL--EID-PSNT 307 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTC-TTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhC-chhH
Confidence 3567899999999999887751 012 245678888899999999999999999988 221 2367
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIR 128 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~ 128 (670)
..|..+-.+|.+.| +.++|+..|.+..+ +.| +...+..+-.++.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g---~~~eA~~~l~~Al~----l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLK---EYDQALADLKKAQE----IAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 78899999999876 345 45566666666666666665543
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.07 E-value=1.3 Score=39.43 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=94.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH--
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR-- 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k-- 79 (670)
..+..-.+++++|+..|++..+.|. |... |=..|...+.+++|...|++-.. .-+...++.|=..|..
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-----~g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACE-----LNSGNGCRFLGDFYENGK 71 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHCS
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHcCC
Confidence 4455566789999999999999883 3333 66667777889999999999873 3577888888888877
Q ss_pred --cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccC
Q 005912 80 --AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 80 --~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~ 138 (670)
.+ +..+|++.|.+-.+ .| +...+..|-..|.. .++.++|...|+...+.|.
T Consensus 72 g~~~---d~~~A~~~~~~Aa~--~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 YVKK---DLRKAAQYYSKACG--LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCc---cHHHHHHHHHHHHc--CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 55 79999999999887 43 56777888888888 8999999999999887653
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.89 E-value=1.1 Score=40.23 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA-------G----------RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~-------G----------v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd 66 (670)
.|.+.|+++.|+..|.+.... . -.-+...|+.+-.+|.+.|++++|...|+.... .. ..+
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~-p~~ 96 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK--RE-ETN 96 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HS-TTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cC-Ccc
Confidence 467788899998888876653 0 011235667777777788888888888877652 11 234
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
...|..+-.+|...| +.++|+..|.+...
T Consensus 97 ~~a~~~~g~~~~~~g---~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 97 EKALFRRAKARIAAW---KLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh---cHHHHHHHHHHHHh
Confidence 667777777788888 67777777777765
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.43 E-value=1 Score=40.50 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhC-------CCC--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYG-------EDY--------MKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~-------~~g--------i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
..+...=..|.+.|++++|...|.+.... ... -.-+...|..+-.+|.+.| +.++|+..+..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~ 88 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45666677888999999999999887620 000 0123467899999999999 78899999999
Q ss_pred hHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 96 MVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 96 M~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
... +.| +...|..+-.+|...|++++|...|......
T Consensus 89 al~----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLK----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 877 234 5788999999999999999999999998874
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.31 Score=40.32 Aligned_cols=65 Identities=6% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
++...|..+-..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT--A-QPQNPVGYSNKAMALIKLG---EYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence 3456677788888899999999999988763 1 1236778888888899999 78899999998876
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.12 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
++...|..+-..+.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+..
T Consensus 2 ~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQG---LYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45677888888999999 78899999999876 234 67888899999999999999999999988753
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.82 E-value=0.26 Score=51.32 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=71.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTF------------------HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~------------------tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P 65 (670)
.|.+.|++++|+..|.+.... .|+.. .|+.+-.+|.+.|++++|...|++... +.|
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p 261 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEE 261 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCT
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence 456789999999999987653 35443 778888899999999999999999763 234
Q ss_pred -CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHH-HHHcCCHHHHHHHHHHHHHc
Q 005912 66 -DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVEC-FTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 66 -d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a-~ak~g~~d~A~~lf~~M~~~ 136 (670)
+...|..+-.+|...| +.++|+..|.+..+ +.|+.. .+..|... ....+..+.+..+|..|...
T Consensus 262 ~~~~a~~~lg~a~~~~g---~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELG---QMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTT---CHHHHHHHHHHTTC----------------------------------------
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6788999999999999 78999999999854 456543 33333333 23455667777788777653
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.41 E-value=1.9 Score=40.21 Aligned_cols=98 Identities=16% Similarity=-0.005 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-------------VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-------------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+...=..+.+.| +.++|+..|++-.+ +.|+ ...|+.+-.++.+.|++++|...++....
T Consensus 13 ~~~~~G~~l~~~g---~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAG---EYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455567778 78889999988766 3343 23899999999999999999999998887
Q ss_pred ccCCCcccccCCCCch---HH----HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 136 YEGGTKVLHNEGNFGD---PL----SLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 136 ~g~~~~v~~~~g~~pd---ty----n~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
. + +.. -...|+ .| +..=.+|...|++++|+..|+...+
T Consensus 86 l-~--n~~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 Y-F--NRR--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp H-H--HHH--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-h--hcc--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 0 000 001122 66 7777889999999999999997754
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.25 E-value=1.8 Score=36.28 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 88 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
.|+..|.+..+ ..| +...|..+-..|...|++++|...|....+..... +.+|..+-..|.+.|++
T Consensus 3 ~a~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLA----QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHT----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHcCCH
Confidence 36667777765 234 56778888888999999999999999888753211 22788888899999999
Q ss_pred HHHHHHHHHHhhC
Q 005912 167 IELLEALEAMAKD 179 (670)
Q Consensus 167 eeA~~vf~~M~~~ 179 (670)
++|...|+...+.
T Consensus 70 ~~A~~~~~~al~~ 82 (115)
T 2kat_A 70 AGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.80 E-value=5.5 Score=43.70 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=15.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 005912 4 EDCKAGDHSNALEIAYEMEAA 24 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~ 24 (670)
-+.+.|+++.|..+|......
T Consensus 222 ~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 222 YLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhC
Confidence 345677888888888877665
No 193
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=90.57 E-value=17 Score=37.24 Aligned_cols=216 Identities=9% Similarity=0.040 Sum_probs=132.0
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYC--AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g--~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
.+.|. .-++|+.++..+.. +.|+. ..|+.-=.++...| .++++++++..+....+.... +|+
T Consensus 43 ~~~~e--~s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------aW~ 107 (306)
T 3dra_A 43 MKAEE--YSERALHITELGIN----ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------IWN 107 (306)
T ss_dssp HHTTC--CSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------HHH
T ss_pred HHcCC--CCHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------HHH
Confidence 34453 45789999999987 56765 45677777777888 999999999999876443222 555
Q ss_pred HHHHHH----HHc---CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc
Q 005912 155 LYLRAL----CRE---GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 227 (670)
Q Consensus 155 ~LI~ay----~k~---G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~ 227 (670)
.=-..+ .+. +++++++.+++.+.+.+. -+.-. ..+...+ +.+-|.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p---kny~a--W~~R~~v-----------------------l~~l~~ 159 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP---KNHHV--WSYRKWL-----------------------VDTFDL 159 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT---TCHHH--HHHHHHH-----------------------HHHTTC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC---CCHHH--HHHHHHH-----------------------HHHhcc
Confidence 533333 445 789999999999988752 22211 1122111 122223
Q ss_pred HH--HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCccCCCCHHHHHHHH
Q 005912 228 TG--ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG------KKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299 (670)
Q Consensus 228 ~~--~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~------~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l 299 (670)
.+ ++..+++.+.+.. |. +...|+--- ..+.+.|. ++++++.+..+...... +.+.++..-
T Consensus 160 ~~~~~EL~~~~~~i~~d--~~-N~sAW~~R~----~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-----n~SaW~y~~ 227 (306)
T 3dra_A 160 HNDAKELSFVDKVIDTD--LK-NNSAWSHRF----FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-----NPSTWNYLL 227 (306)
T ss_dssp TTCHHHHHHHHHHHHHC--TT-CHHHHHHHH----HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-----CHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhC--CC-CHHHHHHHH----HHHHhccccchhhhHHHHHHHHHHHHHhCCC-----CccHHHHHH
Confidence 33 6666676665431 22 123443221 12233344 78899999988877654 677776666
Q ss_pred HHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG---LPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 300 ~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G---ip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
-.+.+.++ . ...+..+.......+ +.....+..+...+++.|+.++|..
T Consensus 228 ~ll~~~~~--~----------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 228 GIHERFDR--S----------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHTTC--C----------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCC--C----------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666544 1 222334555544433 3455778888899998888887763
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.42 E-value=3 Score=38.79 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-------------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-------------TETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-------------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
..+..+=..+.+.|++++|...|++... +.|+ ...|+.+=.++.+.| +.++|+..|++-.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL 84 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 3445555667788999999999998663 2232 338999999999999 7788888888776
Q ss_pred hc---cCCCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 98 ED---HKRLQPNV-KTY----ALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 98 ~~---~~gi~Pd~-~Ty----~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+. ...+.|+. ..| ...-.++...|++++|+..|+...+.
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 51 01237864 567 78888999999999999999988764
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=90.11 E-value=1.8 Score=36.36 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...|..+-..|.+.| +.++|+..|.+... +.| +...|..+-.+|...|+.++|...|.....
T Consensus 18 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHE---QFDAALPHLRAALD----FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555666666 55566666655554 122 344555555666666666666666655443
No 196
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.95 E-value=1.4 Score=47.75 Aligned_cols=97 Identities=9% Similarity=0.037 Sum_probs=70.7
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~~g-i~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
|..+.+.| +.++|+.++++..+.... +-|+ ..+++.|...|...|++++|+.++.+...-.. .+. -..
T Consensus 294 ie~~~~~g---~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~--~~l--g~~ 366 (429)
T 3qwp_A 294 IEELKAHW---KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR--IFF--PGS 366 (429)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHS--CSS
T ss_pred HHHHHhhc---cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH--HHc--CCC
Confidence 45566778 678999999888753222 2332 45789999999999999999999998774210 000 112
Q ss_pred Cch---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 149 FGD---PLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 149 ~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.|+ +|+.|-..|...|++++|..++++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233 89999999999999999999998653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=89.91 E-value=2.8 Score=32.77 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+...|..+-..|.+.| +.++|+..|.+... .. ..+..++..+-.+|.+.|++++|...|......
T Consensus 8 ~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456777777777888 67788888887765 21 224667777778888888888888888887764
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.89 E-value=1.7 Score=47.07 Aligned_cols=91 Identities=8% Similarity=-0.091 Sum_probs=65.9
Q ss_pred CcccHHHHHHHHHHhHhccCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC-CCch---H
Q 005912 82 SYDRVQDVAELLGMMVEDHKR-LQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG-NFGD---P 152 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~g-i~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g-~~pd---t 152 (670)
++.+.++|+.++.+..+.... +-|+ ..||+.|..+|...|++++|..+++....-... + +| ..|+ +
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~--~---lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK--H---YPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H---SCSSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--H---cCCCChHHHHH
Confidence 333678888888876542122 3333 468999999999999999999999987742100 0 11 1233 8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 153 LSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 153 yn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
||.|=..|...|++++|..+|++..
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.79 E-value=1.8 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
...+..+-.+|.+.|++++|...|+...+.... .+.+|..+-.+|.+.|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD---------YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666666666666553211 11156666666666666666666666544
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.61 E-value=1.6 Score=38.71 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH--
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK-- 119 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak-- 119 (670)
..+++++|...|++.. ..| .|+.. |=..|...+ .+++|++.|.+-.+ . -+...+..|-..|..
T Consensus 7 ~~~d~~~A~~~~~~aa--~~g-~~~a~----lg~~y~~g~---~~~~A~~~~~~Aa~--~---g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 7 VKKDLKKAIQYYVKAC--ELN-EMFGC----LSLVSNSQI---NKQKLFQYLSKACE--L---NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHH--HTT-CTTHH----HHHHTCTTS---CHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHH--cCC-CHhhh----HHHHHHcCC---CHHHHHHHHHHHHc--C---CCHHHHHHHHHHHHcCC
Confidence 3457889999999987 444 44443 333333334 67889999999887 4 366777888888887
Q ss_pred --cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCC
Q 005912 120 --YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 120 --~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G~~eeA~~vf~~M~~~gi 181 (670)
.++.++|.+.|....+.+. +..+..|=..|.. .+++++|...|+.-.+.|.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8999999999999887543 2267778888888 8999999999999988874
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=89.23 E-value=2.5 Score=33.12 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~ 108 (670)
...+..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.| +.++|+..|.+..+ +.| +..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~----~~p~~~~ 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALE----LDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCHH
Confidence 45677777888899999999999998763 11 235778888889999999 78899999998876 234 345
Q ss_pred HHHHHHHHHHH
Q 005912 109 TYALLVECFTK 119 (670)
Q Consensus 109 Ty~~LL~a~ak 119 (670)
++..+-.++.+
T Consensus 79 ~~~~l~~~~~~ 89 (91)
T 1na3_A 79 AKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.59 E-value=1.8 Score=46.87 Aligned_cols=89 Identities=8% Similarity=-0.035 Sum_probs=45.1
Q ss_pred HcCChHHHHHHHHHchhC-CCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH-----hccCCCCCC-HHHH
Q 005912 42 TCGIPEVAFATFENMEYG-EDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMV-----EDHKRLQPN-VKTY 110 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~-~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~-----~~~~gi~Pd-~~Ty 110 (670)
+.|++++|..++++.... ..-+.|+ ..+++.|...|...| +.++|+.++.+.. .. ..-.|+ ..+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g---~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l 374 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG---LLEEALFYGTRTMEPYRIFF-PGSHPVRGVQV 374 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhHHHHc-CCCChHHHHHH
Confidence 345555555555554421 0111111 345666666666666 3444444444321 11 233343 4677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+.|-..|...|++++|+.++.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777777777766666554
No 203
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.16 E-value=8.6 Score=36.31 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=65.8
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 118 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a 118 (670)
.-..+|+++.|.++-+.+. +...|..|=....+.| +++-|.+.|..... |..|.--|.
T Consensus 14 LAL~lg~l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~g---n~~lAe~cy~~~~D-----------~~~L~~Ly~ 71 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN--------DSITWERLIQEALAQG---NASLAEMIYQTQHS-----------FDKLSFLYL 71 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHTTC-----------HHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHcC---ChHHHHHHHHHhCC-----------HHHHHHHHH
Confidence 3445777777777766654 5667777777777777 66677777776643 444555555
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
-.|+.+.-..+-+.....+ -+|.-...|.-.|+++++.++|.+.
T Consensus 72 ~tg~~e~L~kla~iA~~~g--------------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE--------------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHCc--------------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5666666555544433332 3677777777778888888777543
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.08 E-value=6.3 Score=43.18 Aligned_cols=45 Identities=13% Similarity=-0.130 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
..+..+|++.... +..+...|-..+..+.+.|+++.|+.+|++..
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788887764 34457778888888889999999999999877
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.21 E-value=13 Score=42.42 Aligned_cols=46 Identities=13% Similarity=-0.117 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 117 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
+...|+++.|.++.+.+.. +..|..|-..+.+.|+++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~~~--------------~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDESA--------------EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhCc--------------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455666666666443321 115666666666666666666666655
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.08 E-value=2.7 Score=34.62 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...|..+-..|.+.| +.++|+..|.+..+. .| +...|..+-.+|.+.|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHD---NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888999999 788999999988762 34 456788888999999999999998887665
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.50 E-value=1.5 Score=47.52 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
.+|+.|-..|...|++++|+.++.+..
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=84.32 E-value=43 Score=34.97 Aligned_cols=154 Identities=8% Similarity=0.014 Sum_probs=107.7
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-CCcc
Q 005912 8 AGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g~~~ 84 (670)
....++|+++++.+... .| +...||.-=..+...| .++++..+++.+.. .-..+...|+.---.+.+. +.
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~---~nPKny~aW~hR~wlL~~l~~~-- 139 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV---QNLKSYQVWHHRLLLLDRISPQ-- 139 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHCCS--
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCC--
Confidence 44557899999998875 34 4455666555666677 59999999999883 2245778888877777665 41
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT--------EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d--------~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
..++++.++..+.+ .. .-|-..|+.---.+.+.|..+ ++.+.+..+.+..+...- .|+--
T Consensus 140 ~~~~EL~~~~k~L~--~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S---------AW~~R 207 (349)
T 3q7a_A 140 DPVSEIEYIHGSLL--PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS---------AWGWR 207 (349)
T ss_dssp CCHHHHHHHHHHTS--SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH---------HHHHH
T ss_pred ChHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH---------HHHHH
Confidence 35789999999976 22 336778877666666666555 888888888875433221 67776
Q ss_pred HHHHHHcCC-------HHHHHHHHHHHhhCC
Q 005912 157 LRALCREGR-------IIELLEALEAMAKDN 180 (670)
Q Consensus 157 I~ay~k~G~-------~eeA~~vf~~M~~~g 180 (670)
--.+.+.++ ++++++.++......
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 666666665 688888888887765
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=81.03 E-value=57 Score=34.03 Aligned_cols=166 Identities=7% Similarity=0.016 Sum_probs=107.7
Q ss_pred hcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 7 KAG-DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC-G-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 7 k~G-~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~-G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
..| .+++++.+++.+.... .-+...||----.+.+. + +++++..+++.+. .. -..|...|+----.+.+.|.+
T Consensus 100 ~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L--~~-dpkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL--LP-DPKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT--SS-CTTCHHHHHHHHHHHHHHHHT
T ss_pred HhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHhccc
Confidence 345 5899999999988653 33666776666666665 6 8899999999988 22 245777887655555444421
Q ss_pred c-----cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHccCCCc----------
Q 005912 84 D-----RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA-------VTEAIRHFRALQNYEGGTK---------- 141 (670)
Q Consensus 84 ~-----~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~-------~d~A~~lf~~M~~~g~~~~---------- 141 (670)
+ ...++++++.++.+ .. .-|...|+..-..+.+.+. ++++.+.+.......+...
T Consensus 176 ~~~~~~~~~eELe~~~k~I~--~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLR--VD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 13488889998887 32 2366777777777777665 5666666554443322110
Q ss_pred -----------------------------------ccccC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 142 -----------------------------------VLHNE------GNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 142 -----------------------------------v~~~~------g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
++... -.++.....|.+.|...|+.++|.++++.+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00000 122227778888999999999999999988754
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.17 E-value=13 Score=29.58 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHchh
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTF-HFNHLLSCQATCGIPEVAFATFENMEY 58 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~-tyn~LI~~yak~G~~e~A~~lf~~M~~ 58 (670)
..|.+.|++++|+..|++..+.. ..+.. .|..+-..|.+.|++++|...|++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35778899999999999887652 22556 788888889999999999999998763
No 211
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=74.90 E-value=56 Score=30.66 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=89.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
-.+.|+++.|+++.+.+ -+...|+.|=....+.|+++-|.+.|.+... |..|.--|.-.|
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg--- 74 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTG--- 74 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHT---
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhC---
Confidence 45789999999998877 3678999999999999999999999999982 455555566667
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
+.+...+ +.++... .| -|+....++.-.|+++++.++|....+ |.--+-..-..|
T Consensus 75 ~~e~L~k-la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r-----------------~~eA~~~A~t~g 129 (177)
T 3mkq_B 75 DVNKLSK-MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGS-----------------LPLAYAVAKANG 129 (177)
T ss_dssp CHHHHHH-HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTC-----------------HHHHHHHHHHTT
T ss_pred CHHHHHH-HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCC-----------------hHHHHHHHHHcC
Confidence 3433222 2222221 11 367777788889999999999976544 222222223467
Q ss_pred CHHHHHHHHHHH
Q 005912 165 RIIELLEALEAM 176 (670)
Q Consensus 165 ~~eeA~~vf~~M 176 (670)
..+.|.++.+++
T Consensus 130 ~~~~a~~~~~~~ 141 (177)
T 3mkq_B 130 DEAAASAFLEQA 141 (177)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHh
Confidence 778888888776
No 212
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=72.62 E-value=71 Score=32.97 Aligned_cols=157 Identities=11% Similarity=0.054 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC------
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI-PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES------ 82 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~-~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~------ 82 (670)
.+++++.+++.+.+.. .-|...|+----.+.+.|. ++++...++.+.. .. .-|...|+-.-..+.+.+.
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~-p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RN-FSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HC-SCCHHHHHHHHHHHHHHSCCC----
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHhhhcccccc
Confidence 4789999999998753 3477777777777777787 5899999988873 22 4577788877666665411
Q ss_pred ---c--ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHccCCCccccc
Q 005912 83 ---Y--DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY-----------CAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 83 ---~--~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~-----------g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
. +..+++++.+.+... +.| |...|+.+-..+.+. +.++++.+.+.++....+.. .+.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~----~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~--~w~ 274 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN--KWC 274 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC--HHH
T ss_pred ccccchHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc--chH
Confidence 0 257889999988876 345 566677655555554 46788899998888754321 100
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
--+...+..+....|..+++...+.++.+-+
T Consensus 275 ----l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 275 ----LLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp ----HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 0022222233335677788888888887654
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=69.71 E-value=9.9 Score=35.17 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHchhCCCCCCC-CHHHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI----------PEVAFATFENMEYGEDYMKP-DTETYNCV 73 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~----------~e~A~~lf~~M~~~~~gi~P-d~~tyn~L 73 (670)
..+.+.+++|+..++.-.+.. .-+...|+.+=.++...++ +++|...|++... +.| +...|+.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHHH
Confidence 456778999999999887642 2367777777777777665 4699999998763 355 46789999
Q ss_pred HHHHHHcCCc--------ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 74 IQAYTRAESY--------DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 74 I~ay~k~g~~--------~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
=.+|...|.+ ++.++|+..|.+-.+ +.|+..+|...+..+ +.|-+++-++.+.+.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~----l~P~~~~y~~al~~~------~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHH------HhCHhccCccccccc
Confidence 9999876411 268999999999987 689988887777654 556666666665543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=69.01 E-value=15 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=47.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd-tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....+.+.|++++|...|....+.... .+. .|..+-.+|.+.|++++|...|+...+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV---------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS---------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677899999999999998875322 223 57778888999999999999999988765
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.31 E-value=74 Score=28.94 Aligned_cols=124 Identities=9% Similarity=0.056 Sum_probs=81.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC----------------CCCHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM----------------KPDTET 69 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi----------------~Pd~~t 69 (670)
.-.|.+++..++..+.... .|..-||-+|.-....-+-+-..++++.+-. -..+ ..+..-
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk-iFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS-YFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG-GSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh-hcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 3457778888888887754 3666777776655555555555555555432 1111 123444
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
.+.-+..++..| +-+.--+++.+.. .+-+|+....-.+-+||.+.|+..++.+++.+..++|++
T Consensus 94 vd~ALd~lv~~~---KkDqLdki~~~~l---~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQG---KRDKLEEIGREIL---KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhc---cHhHHHHHHHHHh---ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 556666666666 4444445666643 345778888889999999999999999999999888764
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=64.69 E-value=69 Score=32.65 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=79.4
Q ss_pred CHHHHHHHHHH-HHHc--CCc---ccHHHHHHHHHHhHhccCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHH
Q 005912 66 DTETYNCVIQA-YTRA--ESY---DRVQDVAELLGMMVEDHKRLQPN---VKTYALLVECFTK-----YCAVTEAIRHFR 131 (670)
Q Consensus 66 d~~tyn~LI~a-y~k~--g~~---~~~~eAl~lf~eM~~~~~gi~Pd---~~Ty~~LL~a~ak-----~g~~d~A~~lf~ 131 (670)
..-.|..++.+ +... |.+ ..+..|..++++..+ +-|+ ...|.+|-..|.+ -|+.++|+++|+
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 34567777664 4443 433 345667777777765 5677 5688999999999 499999999999
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCCc
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE-GRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~-G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
+.......-++ +++..+-+.||+. |+.+++.+.|++-........|.
T Consensus 229 rAL~LnP~~~i--------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 229 HLTRYCSAHDP--------DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHCCTTCS--------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHhCCCCCc--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 99885432222 3788899999995 99999999999998876532244
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.58 E-value=57 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 105 PNVKTYALLVECFTKYCA---VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 105 Pd~~Ty~~LL~a~ak~g~---~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
.|...+..+-.++...++ .++|..+|+...+... .++.+...+=..+.+.|++++|...|+.+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp---------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP---------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666654444 6899999998887432 2222666777788999999999999999998875
Q ss_pred CCCCc
Q 005912 182 PVPPR 186 (670)
Q Consensus 182 ~i~p~ 186 (670)
. .|+
T Consensus 75 ~-~~~ 78 (93)
T 3bee_A 75 P-NLD 78 (93)
T ss_dssp T-TCC
T ss_pred C-Ccc
Confidence 4 443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=63.23 E-value=30 Score=31.70 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=54.7
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC--CHHHHHHHHHHHHHcCCH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP--NVKTYALLVECFTKYCAV 123 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P--d~~Ty~~LL~a~ak~g~~ 123 (670)
+..+++-|.+.. ..+. ++..+.-.+--++++.++-.+..+++.+|++..+ .. .| +...+=.|--+|.+.|++
T Consensus 14 l~~~~~~y~~e~--~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 14 LLKFEKKFQSEK--AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHH--HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHH--ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cC-CccchHHHHHHHHHHHHHccCH
Confidence 345555565554 2232 6666666666677777654456788888888776 32 24 223333444566888888
Q ss_pred HHHHHHHHHHHHcc
Q 005912 124 TEAIRHFRALQNYE 137 (670)
Q Consensus 124 d~A~~lf~~M~~~g 137 (670)
++|++.++.+.+..
T Consensus 88 ~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 88 EKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888887753
No 219
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.65 E-value=1.2e+02 Score=28.74 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=20.4
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHH
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLL 276 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf 276 (670)
..+.+.+.+.|..++.....-.+.+ ...++.|+.+.+..|+
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L----~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPL----ILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHH----HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHH----HHHHHcCCHHHHHHHH
Confidence 4455555566666654222222333 3446677766544443
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.01 E-value=40 Score=35.50 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=56.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHH-----hCCCCCchh---HHHHh
Q 005912 584 IIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMET-----TGIAVPDQT---LDRVI 655 (670)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~ 655 (670)
++.+..+.+-++.++..++... .-+.+...+|..++.++...|+..+|++....+++ -|+.|+++| +.+|+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~-~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALT-FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3455556677777887777764 34677888999999999999999999999888765 599999986 44555
Q ss_pred hh
Q 005912 656 TS 657 (670)
Q Consensus 656 ~~ 657 (670)
..
T Consensus 256 ~~ 257 (388)
T 2ff4_A 256 RQ 257 (388)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=57.01 E-value=38 Score=31.03 Aligned_cols=85 Identities=8% Similarity=0.003 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCcccccCCCCch-HHHHHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC---AVTEAIRHFRALQNYEGGTKVLHNEGNFGD-PLSLYLRAL 160 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g---~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd-tyn~LI~ay 160 (670)
.+..+.+-|.+... .+. ++..+--.+-.+++++. ++++|..+|+.+.+...+..- .+ .|+ |=-+|
T Consensus 13 ~l~~~~~~y~~e~~--~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-------rd~lY~-LAv~~ 81 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA--AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-------RDYVFY-LAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHHH--TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHc--cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-------HHHHHH-HHHHH
Confidence 34556666766655 444 67777777777889988 677999999998875311010 11 344 44566
Q ss_pred HHcCCHHHHHHHHHHHhhCC
Q 005912 161 CREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.|++++|.+.|+...+..
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=56.57 E-value=35 Score=36.04 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 64 ~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
..+..+|.++-..+...| +.++|...+++... . .|+...|..+=..+.-.|+.++|.+.|....+..+.
T Consensus 274 ~~~a~~~~alal~~l~~g---d~d~A~~~l~rAl~--L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKG---KTDESYQAINTGID--L--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 567888888877777778 78899999999988 3 389889999999999999999999999888876553
No 223
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=56.48 E-value=15 Score=38.94 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh---HhccCCCCCCHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM---VEDHKRLQPNVK 108 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM---~~~~~gi~Pd~~ 108 (670)
....++..+...|++.+|...+..+.. --.-+-..|..+|.+|.+.| +..+|++.|... ..+.-|+.|...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~---~~P~~E~~~~~lm~al~~~G---r~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSD---RQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 446677888889999998887777652 11346778999999999999 677777777654 212278899887
Q ss_pred HHHHH
Q 005912 109 TYALL 113 (670)
Q Consensus 109 Ty~~L 113 (670)
+=...
T Consensus 247 l~~l~ 251 (388)
T 2ff4_A 247 LRALN 251 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 224
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=56.40 E-value=15 Score=34.00 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc-------cHHHHHHHHHHhHhccCCCCCC-HHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD-------RVQDVAELLGMMVEDHKRLQPN-VKTYAL 112 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~-------~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~ 112 (670)
.+.+.+++|...|+.... .. ..+...|+.+=.++.+.++++ .+++|+..|++-.+ +.|+ ..+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHH
Confidence 455678889998888763 11 336778887777888776332 25699999999877 5674 578899
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHcc
Q 005912 113 LVECFTKYC-----------AVTEAIRHFRALQNYE 137 (670)
Q Consensus 113 LL~a~ak~g-----------~~d~A~~lf~~M~~~g 137 (670)
+=.+|...| ++++|.+.|+......
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999998774 8999999999988753
No 225
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=54.88 E-value=1.5e+02 Score=32.66 Aligned_cols=152 Identities=11% Similarity=0.009 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 11 HSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGI----------PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~----------~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
-++|++.++++... .| +...||.-=..+.+.|+ ++++...++.+.. .-..+...|+----.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 45778888888764 34 33445443334444455 8999999999883 124567788877666777
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC-AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g-~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
.+.+ +.++++.+++++.+ .. .-|...|+.--..+.+.| ..+++.+.+..+.+..+...- +|+-.-.
T Consensus 120 l~~~-~~~~el~~~~k~l~--~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s---------aW~~r~~ 186 (567)
T 1dce_A 120 LPEP-NWARELELCARFLE--AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS---------SWHYRSC 186 (567)
T ss_dssp CSSC-CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH---------HHHHHHH
T ss_pred cccc-cHHHHHHHHHHHHh--hc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc---------HHHHHHH
Confidence 7632 35899999999988 32 247888999888888999 899999998888765433211 6666655
Q ss_pred HHHHc--------------CCHHHHHHHHHHHhhCC
Q 005912 159 ALCRE--------------GRIIELLEALEAMAKDN 180 (670)
Q Consensus 159 ay~k~--------------G~~eeA~~vf~~M~~~g 180 (670)
.+.+. +.++++.+.++......
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence 55552 55788888888776654
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=54.61 E-value=1.1e+02 Score=32.09 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..+..+|.++-..+...|+++.|...+++... . .|+...|..+=..+.-.| +.++|.+.|.+-.. +.|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--L--n~s~~a~~llG~~~~~~G---~~~eA~e~~~~Alr----L~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID--L--EMSWLNYVLLGKVYEMKG---MNREAADAYLTAFN----LRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh----cCCC
Confidence 44666666666666667888888888888773 2 377767766666677778 77788888877655 4576
Q ss_pred HHHHH
Q 005912 107 VKTYA 111 (670)
Q Consensus 107 ~~Ty~ 111 (670)
..||.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 66654
No 227
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=52.64 E-value=31 Score=29.53 Aligned_cols=61 Identities=10% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHH
Q 005912 48 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 116 (670)
Q Consensus 48 ~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a 116 (670)
+.++-++.+- ...+.|++....+.+++|-+-+ +..-|.++|+-.+. ++.+...+|..++.-
T Consensus 28 e~rrglN~l~--~~DlVP~P~ii~aaLrAcRRvN---D~alAVR~lE~iK~---K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLV--GYDLVPEPKIIDAALRACRRLN---DFASAVRILEVVKD---KAGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH---HTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHH---HhcCchhhHHHHHHH
Confidence 4444444444 4555555555555555555555 45555555555554 122223455555444
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=51.52 E-value=72 Score=26.12 Aligned_cols=73 Identities=7% Similarity=-0.079 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+..-+-.|-..+.+.+++..|...|+...+........ ....++.|..|-.+|.+.|++++|..++++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34445566677888999999999998877642111000 00112389999999999999999999999987753
No 229
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.31 E-value=2.3e+02 Score=30.15 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH----HH
Q 005912 9 GDHSNALEIAYEMEAA-----GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY----TR 79 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~-----Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay----~k 79 (670)
|++..|++.+-.+... ....+......++..|...|+++...+.+.-+.. ..|..+..++ .||+-+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk-kr~qlk~ai~--~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK-KHGQLKLSIQ--YMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT-TTTTSHHHHH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhhhhHHHHH--HHHHHHHHHHhc
Confidence 6788888887776642 3445677788999999999999999888877764 4555555544 344333 22
Q ss_pred cCCcccHHHHHHHHHHhHhcc-CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch----
Q 005912 80 AESYDRVQDVAELLGMMVEDH-KRLQP---NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD---- 151 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~-~gi~P---d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd---- 151 (670)
.... +...-+.+........ ..+.. .......|...|-..|++.+|..++..+..-- ++....
T Consensus 107 ~~~~-d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et--------~~~~~~~~kv 177 (445)
T 4b4t_P 107 SKSL-DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET--------YGSMEMSEKI 177 (445)
T ss_dssp HCTT-HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSSSCHHHHH
T ss_pred CCch-hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------HhcccHHHHH
Confidence 3311 1111122222111100 12222 12233567788889999999999999986421 111111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 152 -PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 152 -tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.|..-++.|...+++..|..++.....
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999999999999988643
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=50.05 E-value=90 Score=28.42 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=66.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
..+|++......+-.+.. +...++.-++.+...|.-+.-.+++..+. .+.+|++...-.+-+||.+-| .
T Consensus 72 s~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l---~n~~~~~~~l~kia~Ay~Klg---~ 140 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREIL---KNNEVSASILVAIANALRRVG---D 140 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTT---C
T ss_pred HhhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHh---ccCCCChHHHHHHHHHHHHhc---c
Confidence 356667777766655542 44667888899999999999999999964 245788888889999999999 7
Q ss_pred HHHHHHHHHHhHhccCCCC
Q 005912 86 VQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~ 104 (670)
..+|.+++.+--+ +|++
T Consensus 141 ~r~a~eLl~~AC~--kG~k 157 (172)
T 1wy6_A 141 ERDATTLLIEACK--KGEK 157 (172)
T ss_dssp HHHHHHHHHHHHH--TTCH
T ss_pred hhhHHHHHHHHHH--hhhH
Confidence 8899999998887 7763
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=49.96 E-value=96 Score=25.30 Aligned_cols=65 Identities=9% Similarity=-0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchh---CCC-CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEY---GED-YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~---~~~-gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
.-+-.|=..+.+.|++..|...|+.... ... .-.+....|..|-.+|.+.| +.+.|+.++++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh
Confidence 3344455556666777777776666442 000 11234556666666666666 56666666666654
No 232
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=47.28 E-value=20 Score=28.72 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhCCCCCch
Q 005912 629 LDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~ 649 (670)
|-.|-+|++.||..||--|.+
T Consensus 38 YnRAArlid~lE~~GiVgp~~ 58 (73)
T 2ve8_A 38 YNRAARMIEAMEMAGVVTPMN 58 (73)
T ss_dssp HHHHHHHHHHHHHTTSBCCCC
T ss_pred hHHHHHHHHHHHHCCcCCccc
Confidence 456779999999999976654
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=45.32 E-value=93 Score=35.95 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHchhCCCCCCCCH-HHH-HHHHHHHHHcCCcccHHHHHHHHHHhHhc----cCCCCCC
Q 005912 34 NHLLSCQATCGI-PEVAFATFENMEYGEDYMKPDT-ETY-NCVIQAYTRAESYDRVQDVAELLGMMVED----HKRLQPN 106 (670)
Q Consensus 34 n~LI~~yak~G~-~e~A~~lf~~M~~~~~gi~Pd~-~ty-n~LI~ay~k~g~~~~~~eAl~lf~eM~~~----~~gi~Pd 106 (670)
.+|+..+...|+ ++.|..+|+++.. . .|.. +-| .++|..+.+.++ +--+|.+++.+..+. ...+.+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~--~--~p~~~~~~~~~~i~~~~~~~~--~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTK--K--DPIHDIYYKTAMITILDHIET--KELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHH--H--CGGGHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHh--h--CCchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 344444444556 5889999999873 1 3432 222 334443333331 344566666554320 0112221
Q ss_pred HH------HH-HHHH----HHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 107 VK------TY-ALLV----ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 107 ~~------Ty-~~LL----~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.. .+ ..|| .-|...|+++.|+.+-+...... +.... +|-.|..+|.+.|+++.|+-.++.
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~--------tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFE--------SWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHH--------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhH--------HHHHHHHHHHHhccHHHHHHHHhc
Confidence 11 11 1122 33557899999999998877642 11222 999999999999999999999998
Q ss_pred Hh
Q 005912 176 MA 177 (670)
Q Consensus 176 M~ 177 (670)
+.
T Consensus 397 cP 398 (754)
T 4gns_B 397 MP 398 (754)
T ss_dssp SC
T ss_pred CC
Confidence 83
No 234
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=44.07 E-value=2.8e+02 Score=28.37 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=106.1
Q ss_pred HHhcCChH-HHHHHHHHHHHcCCCCCHHH-HH---HHHHHHHHcC-------ChHHHHHHHHHchhCCCCCCCCHHHHHH
Q 005912 5 DCKAGDHS-NALEIAYEMEAAGRMATTFH-FN---HLLSCQATCG-------IPEVAFATFENMEYGEDYMKPDTETYNC 72 (670)
Q Consensus 5 y~k~G~~~-~Al~lf~~M~~~Gv~Pd~~t-yn---~LI~~yak~G-------~~e~A~~lf~~M~~~~~gi~Pd~~tyn~ 72 (670)
..+.|.++ +|+.+++.+... -|+..| || .++....+.. .++++..+++.+.. .-..+..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~---~~PKny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 34555555 789999988864 454333 33 2333333321 26788899988872 12457888888
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA-VTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~-~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
---.+.+.|.. ..++++.++..+.+ .. .-|-..|+.--..+.+.|. .+++.+.+..+.+..+....
T Consensus 114 R~wlL~~l~~~-~~~~EL~~~~k~l~--~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--------- 180 (331)
T 3dss_A 114 RCWLLSRLPEP-NWARELELCARFLE--AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--------- 180 (331)
T ss_dssp HHHHHHHCSSC-CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH---------
T ss_pred HHHHHhccCcc-cHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH---------
Confidence 77777777721 27899999999987 22 3478888888888888888 68999999999886543322
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHhhCC
Q 005912 152 PLSLYLRALCRE--------------GRIIELLEALEAMAKDN 180 (670)
Q Consensus 152 tyn~LI~ay~k~--------------G~~eeA~~vf~~M~~~g 180 (670)
+|+-.-..+.+. +.++++++.+.......
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 566554444443 45788888888877654
No 235
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.77 E-value=1.3e+02 Score=27.71 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 005912 261 KQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 261 ~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
...++.|+.+.+.-|++.....+
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHcCcHHHHHHHHHhhhccC
Confidence 44477788777666665544443
No 236
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.84 E-value=89 Score=29.07 Aligned_cols=220 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
|..-++.|+.+ +++.+.+.|..++. ..-.+.+...++.|+++-+..+++.-. .--.+|...++.|..+...
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---LVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---CCCCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC---CCCCCCCCCCcHHHHHHHc
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
.. .+.++++-+... ..+......-.+.+...+..|+++ +++.+.+.|..++.... ..++.+..
T Consensus 88 ~~-----~~~~~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~------~g~t~L~~ 150 (237)
T 3b7b_A 88 GH-----YEVVQYLLSNGQ--MDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDN------EENICLHW 150 (237)
T ss_dssp TC-----HHHHHHHHTTTC--CCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCT------TSCCHHHH
T ss_pred CC-----HHHHHHHHhCCC--CCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCC------CCCCHHHH
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
.++.|+.+ +++.+.+.|..+...... -.+-+..+ ...|..+ +.+.+.
T Consensus 151 A~~~~~~~----~~~~Ll~~g~~~~~~~~~----g~t~L~~A---------------------~~~~~~~----~v~~Ll 197 (237)
T 3b7b_A 151 AAFSGCVD----IAEILLAAKCDLHAVNIH----GDSPLHIA---------------------ARENRYD----CVVLFL 197 (237)
T ss_dssp HHHHCCHH----HHHHHHTTTCCTTCCCTT----CCCHHHHH---------------------HHTTCHH----HHHHHH
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCcCCC----CCCHHHHH---------------------HHhCCHh----HHHHHH
Q ss_pred cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 240 ~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
+.|..++.....-.+.+ ...++.|+...++++.+.+++.
T Consensus 198 ~~gad~~~~d~~g~t~l----~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 198 SRDSDVTLKNKEGETPL----QCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TTTCCTTCCCTTSCCHH----HHSCTTCHHHHHHHHHHHHHHC
T ss_pred HcCCCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHhhcc
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.97 E-value=2.1e+02 Score=34.53 Aligned_cols=145 Identities=10% Similarity=0.003 Sum_probs=82.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-----------------
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----------------- 66 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----------------- 66 (670)
.+.+.+..+-|.++..... -|..+-=.+=.+|..+|++++|...|.+... |+.++
T Consensus 821 ~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~---~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hhcccchhhhhhcccccccccc
Confidence 3444555555555433222 2333321222457789999999999987642 22111
Q ss_pred ------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 67 ------TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV--KTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 67 ------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..=|.-++.-|-+.+ ..+.++++-..-.+. .+-.+ +. ..|+.++.++...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~---~~~~vi~fa~lAi~~-~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEES---AYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 112566777777777 344444443332221 11112 11 257888999999999999988887665432
Q ss_pred CCCcccccCCCCchHHHHHHHHHHHcCCHHHHH
Q 005912 138 GGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 170 (670)
Q Consensus 138 ~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~ 170 (670)
.. .+....||..+|..|.++.-.
T Consensus 969 ~r----------~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 969 LK----------KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp SC----------HHHHHHHHHHHHHHCCHHHHH
T ss_pred HH----------HHHHHHHHHHHHhCCChhhhh
Confidence 21 225677888888888765533
No 238
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=39.16 E-value=3.6e+02 Score=29.58 Aligned_cols=124 Identities=9% Similarity=0.013 Sum_probs=89.6
Q ss_pred HcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCc-------ccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESY-------DRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~-------~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
....-++|...++.+.. +.| +...||.-=..+.+.|+- ...++++++++.+.+. . .-+..+|+.-
T Consensus 41 ~~~~~eeal~~~~~~l~----~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~-pK~y~aW~hR 113 (567)
T 1dce_A 41 AGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--N-PKSYGTWHHR 113 (567)
T ss_dssp TTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--C-TTCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--C-CCCHHHHHHH
Confidence 34456788999999873 244 456677655555555510 0178999999999872 2 2367788888
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhhCCC
Q 005912 114 VECFTKYC--AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG-RIIELLEALEAMAKDNQ 181 (670)
Q Consensus 114 L~a~ak~g--~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G-~~eeA~~vf~~M~~~gi 181 (670)
-..+.+.+ +++++.+.+..+.+......- +|+----.+.+.| ..+++++.++.+.+.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~---------aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhcccccc---------HHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 88888999 779999999999985432211 6777777777888 89999999999988764
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.95 E-value=1.5e+02 Score=25.28 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.+++|..+-+.+...|. ....--+=+..+...|++++|..+.+.+. .||.+.|-+|-. .+.| ....+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce--~rlG---l~s~l 88 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA------YPDLEPWLALCE--YRLG---LGSAL 88 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC------CGGGHHHHHHHH--HHHT---CHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHH--Hhcc---cHHHH
Confidence 46788888888887765 22222233455778899999999988877 899999988754 4566 45555
Q ss_pred HHHHHHhHhccCCCCCCHHHHH
Q 005912 90 AELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
..-+..|-. +| .|-...|.
T Consensus 89 e~rL~~la~--sg-~p~~q~Fa 107 (116)
T 2p58_C 89 ESRLNRLAR--SQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTT--CC-CHHHHHHH
T ss_pred HHHHHHHHh--CC-CHHHHHHH
Confidence 555556654 33 45555544
No 240
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.94 E-value=1.4e+02 Score=27.48 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=55.7
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH---HHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV---KTYAL 112 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~---~Ty~~ 112 (670)
.|...++.|+++....++..-. ..-..+|..-++.|..+ +..| ..+ +++.+.+ .|..++. ..++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A-~~~g---~~~----~v~~Ll~--~g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADK--SLATRTDQDSRTALHWA-CSAG---HTE----IVEFLLQ--LGVPVNDKDDAGWSP 76 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCG--GGGGCCCTTSCCHHHHH-HHHT---CHH----HHHHHHH--TTCCSCCCCTTSCCH
T ss_pred hHHHHHHhCCHHHHHHHHHhch--hhhhcCCCCCCCHHHHH-HHcC---cHH----HHHHHHH--hCCCCCCcCCCCCCH
Confidence 4666777888888888887654 11113343344444444 4455 233 2333334 4443432 22233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 173 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf 173 (670)
+...+..|+.+- ++.+.+.+..++.....| .+.+...++.|+.+-+..++
T Consensus 77 -L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g------~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 77 -LHIAASAGXDEI----VKALLVKGAHVNAVNQNG------CTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp -HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTS------CCHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHcCHHHH----HHHHHHcCCCCCCCCCCC------CCHHHHHHHcCCHHHHHHHH
Confidence 334445566654 344445555444433222 22344455667766444443
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=37.93 E-value=1.9e+02 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
..|...-+++ .-++.+-++.+.. ..+.|+.....+.|.||-+.+++..|.++|+-++.+
T Consensus 16 ~~~F~~~~iD-~~e~rrglN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 16 VTYFNKPDID-AWELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHTCTTCC-HHHHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCcCcc-HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444332 5556666777766 789999999999999999999999999999998864
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=37.74 E-value=66 Score=29.03 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHH-HcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 29 TTFHFNHLLSCQA-TCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 29 d~~tyn~LI~~ya-k~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
+-.-|++=-..|. +.. +.=+.++-++.+. ...+.|++....+.+++|-+-+ +..-|.++|+-.+. ++.+.
T Consensus 50 t~EeFdaRy~~~F~~~~iD~wElrrglN~l~--~~DlVPeP~Ii~AALrAcRRvN---DfalAVR~lE~vK~---K~~~~ 121 (152)
T 2y69_E 50 TDEEFDARWVTYFNKPDIDAWELRKGMNTLV--GYDLVPEPKIIDAALRACRRLN---DFASAVRILEVVKD---KAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH---HTTTC
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHH---hcCCc
Confidence 3344444333333 333 4556677777777 7788899999999999998888 67888889988886 34455
Q ss_pred HHHHHHHHHHH
Q 005912 107 VKTYALLVECF 117 (670)
Q Consensus 107 ~~Ty~~LL~a~ 117 (670)
..+|..+|.-.
T Consensus 122 ~~iY~y~lqEl 132 (152)
T 2y69_E 122 KEIYPYVIQEL 132 (152)
T ss_dssp TTHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 67888887765
No 243
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=37.73 E-value=1e+02 Score=31.41 Aligned_cols=92 Identities=17% Similarity=0.111 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHchhCCCCCCC--CHHHHHHHHHHHHHc
Q 005912 11 HSNALEIAYEMEAAGRMAT---TFHFNHLLSCQATC-----GIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRA 80 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd---~~tyn~LI~~yak~-----G~~e~A~~lf~~M~~~~~gi~P--d~~tyn~LI~ay~k~ 80 (670)
...|..++++..+ +-|+ -..|+.|-..|.+. |+.++|...|++-.. +.| +..++...-..|++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~----LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR----YCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH----HCCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH----hCCCCCchHHHHHHHHHHHh
Confidence 4456666665555 3566 45788999999994 999999999999774 456 377788888888885
Q ss_pred -CCcccHHHHHHHHHHhHhccCCCC--CCHHHHHHH
Q 005912 81 -ESYDRVQDVAELLGMMVEDHKRLQ--PNVKTYALL 113 (670)
Q Consensus 81 -g~~~~~~eAl~lf~eM~~~~~gi~--Pd~~Ty~~L 113 (670)
| +.+++.+.|++-.. .... |+....+.+
T Consensus 253 ~g---d~~~a~~~L~kAL~--a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 253 LN---NRAGFDEALDRALA--IDPESVPHNKLLVIL 283 (301)
T ss_dssp TT---CHHHHHHHHHHHHH--CCGGGCSSCHHHHHH
T ss_pred cC---CHHHHHHHHHHHHc--CCCCCCCChhHHHHH
Confidence 7 68888999999887 5665 775544443
No 244
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=37.72 E-value=21 Score=32.09 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
|.+-|-++++.+..+||+|++ +.. +-.++......|+..... ..--...|.+++..|-+.|..
T Consensus 51 e~~had~l~eri~~lGg~p~~-~~~-------~~~~~~~~~e~l~~~l~~-E~~~~~~~~~~~~~a~~~~D~ 113 (154)
T 3r2k_A 51 ETQHADALLRRILLLEGTPRM-RPD-------DIHPGTTVPEMLEADLKL-ERHVRAALAKGIALCEQHKDF 113 (154)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC-CCC-------CCCCCSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CCC-------CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCH
Confidence 344588899999999999998 544 112222334444443333 233567788888888776654
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.67 E-value=1.6e+02 Score=23.75 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 64 ~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
.+|...|..+-.++...++-....+|..+|.+... +.|+ ......+-..+.+.|++++|...+..+.....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34566677777776655432235778888887766 3454 45566666777788888888888888876543
No 246
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=37.39 E-value=84 Score=27.70 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcH-HHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPS-AFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.+-|-++..++..+||+|+...-..+=...++.|... ....+|+...+ ++.--...|.++|..|-+.|..
T Consensus 51 ~~had~laeri~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~-~e~~~~~~~~~~i~~a~~~~D~ 121 (146)
T 1jig_A 51 GTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKESAEEMVQTLVN-DYSALIQELKEGMEVAGEAGDA 121 (146)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCCCCSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHhHCcCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCH
Confidence 3447778888999999999877665555555544321 12333333322 1233467889999999866654
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.43 E-value=1.5e+02 Score=25.36 Aligned_cols=87 Identities=20% Similarity=0.099 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.+++|..+-+.+...|. ....--+=+..+...|++++|..+.+.+. .||.+.|-+|-. .+.| ....+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce--~rlG---l~s~l 87 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP------WPALEPWFALCE--WHLG---LGAAL 87 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC------CGGGHHHHHHHH--HHTT---CHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHH--Hhcc---cHHHH
Confidence 46788888888887765 22222233355778899999998887777 899999988744 4667 55565
Q ss_pred HHHHHHhHhccCCCCCCHHHHHH
Q 005912 90 AELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
..-+..|-. +| .|-...|..
T Consensus 88 e~rL~~la~--sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 88 DRRLAGLGG--SS-DPALADFAA 107 (115)
T ss_dssp HHHHHHHHT--CS-SHHHHHHHH
T ss_pred HHHHHHHHh--CC-CHHHHHHHH
Confidence 555656665 33 455555543
No 248
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=36.07 E-value=40 Score=33.46 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHhhhcCCccCcccHHHHHHHHhh
Q 005912 602 QKTHSLGYVFGSPLYDEIISLCLD 625 (670)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~ 625 (670)
+++.++||+|--|.++++|.-.++
T Consensus 270 ~kl~~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 270 RRTLATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHHHHTTCCCSCCSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHH
Confidence 456789999999999999876654
No 249
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=34.74 E-value=37 Score=30.27 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcH-HHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPS-AFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.+-|-++..++..+||+|+......+=.+.++.|... ....+|+...+ ++.--...|.++|..|-+.|..
T Consensus 54 ~~had~laeri~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~-~e~~~~~~~~~~i~~a~~~~D~ 124 (149)
T 1n1q_A 54 SGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGESAAEMVSSVVN-DFVDLVGELKVARDVADEADDE 124 (149)
T ss_dssp HHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCH
Confidence 3447778888999999999877665555555544321 13333333332 2333567888999998766554
No 250
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=34.68 E-value=75 Score=28.04 Aligned_cols=89 Identities=13% Similarity=-0.008 Sum_probs=57.6
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH-HHHHHHHHHHHHc
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV-KTYALLVECFTKY 120 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~-~Ty~~LL~a~ak~ 120 (670)
...+..++.-|.... ..|. |+..|---+--++++..+-.+..+++.++.+... .+ .| +. ...-.|--||.+.
T Consensus 14 ~~~l~~~~~~y~~e~--~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEK--AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KG-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHH--HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cC-CcchHHHHHHHHHHHHHHh
Confidence 334455566665554 2222 6666655556677777755567779999998876 32 24 22 2233455688899
Q ss_pred CCHHHHHHHHHHHHHcc
Q 005912 121 CAVTEAIRHFRALQNYE 137 (670)
Q Consensus 121 g~~d~A~~lf~~M~~~g 137 (670)
|+++.|++.++.+.+..
T Consensus 88 g~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTE 104 (126)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 251
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=34.10 E-value=1.9e+02 Score=24.22 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHHH-HcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHh---hhcCCccCcccHHHHHHHHhhh---------chhH
Q 005912 564 QIMLKVI-ELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKT---HSLGYVFGSPLYDEIISLCLDL---------GELD 630 (670)
Q Consensus 564 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 630 (670)
+++..+. ...|+.+......+++..+..+-.+.+..+++.. -.-| |...|++.+.++... .++.
T Consensus 12 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~---g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 88 (149)
T 2mys_C 12 EAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA---AAITFEEFLPMLQAAANNKDQGTFEDFV 88 (149)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC---CcCcHHHHHHHHHHHhccCCcchHHHHH
Confidence 3455544 3456777777777777777666666677777666 3333 777888888777665 3333
Q ss_pred HHHHH--------------HHHHHHhCCCCCchhHHHHhhh
Q 005912 631 AAVAI--------------VADMETTGIAVPDQTLDRVITS 657 (670)
Q Consensus 631 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 657 (670)
.+..+ ..-|...|..++++.+..++..
T Consensus 89 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 89 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred HHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 43332 2335566777777777777765
No 252
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=32.65 E-value=22 Score=32.26 Aligned_cols=72 Identities=8% Similarity=0.171 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcH-HHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPS-AFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 630 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (670)
+.+-|-++..++..+||+|+...-..+=.+.++.|... ....+|+...+ ++.--...|.++|..|-+.|...
T Consensus 52 e~~had~iaERI~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~-~e~~~~~~~~~~i~~a~~~~D~~ 124 (156)
T 2d5k_A 52 ASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQ-DFTNISKQLENAIEIAGNAGDDV 124 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCCCCSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHH
Confidence 33447888888999999998876555544545544321 13333333332 23345678899999998766543
No 253
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=31.33 E-value=29 Score=32.93 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCC--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhc--------
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPL--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLG-------- 627 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 627 (670)
|.+=|.+|++.+..+||.|++.+-. .|. |+..+..|+....+=.. -...|.+++.+|.+.+
T Consensus 55 E~~HA~~l~~~i~~rGG~~~l~~i~--------~p~~~~~s~~e~le~aL~~Ek~-v~~~l~~l~~la~~~~D~~t~~fL 125 (189)
T 3uno_A 55 ERNHAMMLVQHLLDRDLRVEIPGVD--------TVRNQFDRPREALALALDQERT-VTDQVGRLTAVARDEGDFLGEQFM 125 (189)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBC--------CCCCCCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccCCCC--------CCCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455999999999999999876532 221 12233344333333222 3445566666665433
Q ss_pred ---------hhHHHHHHHHHHHHhCC
Q 005912 628 ---------ELDAAVAIVADMETTGI 644 (670)
Q Consensus 628 ---------~~~~~~~~~~~~~~~~~ 644 (670)
+.+..-.+|+.++..|-
T Consensus 126 e~fL~EQve~~~~l~~~l~~l~~~g~ 151 (189)
T 3uno_A 126 QWFLQEQIEEVALMATLVRVADRAGA 151 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455567777788874
No 254
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.99 E-value=29 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHcCCccCh
Q 005912 556 EWEVELAIQIMLKVIELGGTPTI 578 (670)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~ 578 (670)
+.-+.+||+|++|++..|-.|+-
T Consensus 6 ~RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcH
Confidence 45577899999999999988763
No 255
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=30.56 E-value=53 Score=30.03 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCC--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh------
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPL--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL------ 629 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 629 (670)
|.+=|.++++.+..+||+|++.+. ..|. |...+..|+....+=..-. ..|.+++..|.+.|..
T Consensus 50 E~~HA~~l~~~i~~~gg~~~l~~i--------~~p~~~~~~~~e~l~~al~~E~~~~-~~~~~l~~~a~~~~D~~~~~fl 120 (165)
T 1eum_A 50 EMTHMQRLFDYLTDTGNLPRINTV--------ESPFAEYSSLDELFQETYKHEQLIT-QKINELAHAAMTNQDYPTFNFL 120 (165)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCB--------CCCCCCCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCC--------CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCChhHHHHH
Confidence 334499999999999999998763 2221 1224444444444333322 3377777777765543
Q ss_pred -----------HHHHHHHHHHHHhCC
Q 005912 630 -----------DAAVAIVADMETTGI 644 (670)
Q Consensus 630 -----------~~~~~~~~~~~~~~~ 644 (670)
+..-.+|+.++..|.
T Consensus 121 ~~~l~eq~e~~~~l~~~l~~l~~~g~ 146 (165)
T 1eum_A 121 QWYVSEQHEEEKLFKSIIDKLSLAGK 146 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445566666665
No 256
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=30.34 E-value=56 Score=30.16 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCC--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPL--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.+-|-++++.+..+||+|++.+. +.|. |......|+.....=.. -...|.+++..|.+.|..
T Consensus 65 ~~HAd~l~eri~~lGg~~~l~~i--------~~p~~~~~~~~e~le~~l~~E~~-v~~~~~~l~~~A~~~~D~ 128 (176)
T 1vlg_A 65 LTHAMKFYEYIYERGGRVELEAI--------EKPPSNWNGIKDAFEAALKHEEF-VTQSIYNILELASEEKDH 128 (176)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCB--------CCCCCCCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCeecCCC--------CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCH
Confidence 34499999999999999986542 2221 11233333333332222 456677777777766543
No 257
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=29.75 E-value=33 Score=31.14 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhH
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 630 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (670)
|.+=|-+|+..+..+||+|++.+.. ....++....+|+....+= .--...|.+++..|-+.|...
T Consensus 51 E~~HA~~l~~~i~~lGG~p~~~~~~-------~~~~~~~~~e~l~~~l~~E-~~~~~~~~~~~~~a~~~~D~~ 115 (159)
T 4am5_A 51 EMAHADKFVERILFLEGLPNLQTLD-------PLRIGQTVKEVLESDLAAE-REARALYQEGAAYAASVGDFP 115 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSBCC-------CCCCCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCCcccccc-------ccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHH
Confidence 4556889999999999999987532 1111222333443333221 123567888999998887543
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=28.61 E-value=1.9e+02 Score=26.54 Aligned_cols=105 Identities=10% Similarity=0.136 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 29 TTFHFNHLLSCQATCGIP------EVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~------e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
|..+|=..+...-+.|++ ++.+++|++.. ..+.|+. ..|--|---|+.--...++++|.++|..++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi---a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI---EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH---HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH---HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555666 66666666654 2333431 2222222222211111257788889998876
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 99 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 99 ~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
.|+++ ...|...-.-=.+.|++..|++++......+..
T Consensus 89 ~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55555 556655555556899999999999988775433
No 259
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=28.22 E-value=31 Score=32.38 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=66.0
Q ss_pred CCCCChHHHHHHhhhccCCcchhhHHHHHHh-cch--hhhhhccCCCCCch---hHHHHHHHHHHHHHHHHcCCccChhc
Q 005912 507 WFPEDPFEAFKEMRKRKVFDVSDMYTIADAW-GWT--WEREITNRPPQKWS---QEWEVELAIQIMLKVIELGGTPTIGD 580 (670)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (670)
-+...+.+++....+..+ .-+.-|..-.+| . . |...- -.+|- ..=|.+=|.+|++.+..+||+|++.+
T Consensus 12 ~~~~~~~~~LN~qi~~El-~As~~Yl~~a~~~~-~~d~~l~g----~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~ 85 (183)
T 2cih_A 12 NYHQDSEAAINRQINLDL-YASYVYLSMSYYFD-RDDVALKN----FAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQD 85 (183)
T ss_dssp SCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHT-STTTCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc-ccccChHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCC
Confidence 344567788888877774 555544433333 1 0 11000 01111 11234559999999999999999877
Q ss_pred HHHHHHHHHcCCC---cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhc------------------hhHHHHHHHHHH
Q 005912 581 CAVIIRAAIRAPL---PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLG------------------ELDAAVAIVADM 639 (670)
Q Consensus 581 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 639 (670)
. ..|. |...+.+|+....+=.. -...|.+++.+|.+.+ +.+..-.+|+.+
T Consensus 86 i--------~~p~~~~~~~~~e~le~aL~~Ek~-v~~~l~~l~~~a~~~~D~~t~~fLe~~fl~eq~e~~~~l~~~l~~l 156 (183)
T 2cih_A 86 I--------QKPDCDDWESGLNAMECALHLEKN-VNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNL 156 (183)
T ss_dssp C--------CCCSCSCCCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred C--------CCCCccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2231 22244444433333222 2344666666665533 234455567777
Q ss_pred HHhCCC
Q 005912 640 ETTGIA 645 (670)
Q Consensus 640 ~~~~~~ 645 (670)
+..|..
T Consensus 157 ~~~g~~ 162 (183)
T 2cih_A 157 RKMGAP 162 (183)
T ss_dssp HHHTTT
T ss_pred HHhCCC
Confidence 777763
No 260
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.18 E-value=1.8e+02 Score=29.78 Aligned_cols=98 Identities=7% Similarity=-0.043 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH---
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT--- 109 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T--- 109 (670)
.+.+|.=|...|++++|...++++. ..... ..+.+.++..++-+.. ...+.+..++..+.. .++-+....
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~--~p~~~-~~~v~~~i~~~le~~~--~~re~~~~Ll~~L~~--~~~is~~~~~~G 86 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA--SPSLL-FIFVRHGVESTLERSA--IAREHMGQLLHQLLC--AGHLSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC--CGGGH-HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHH--TTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC--CcccH-HHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHH--CCCCCHHHHHHH
Confidence 3678899999999999999999997 22221 2344555555554432 134567788888887 555433222
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcc
Q 005912 110 YALLVECFTKY-CAVTEAIRHFRALQNYE 137 (670)
Q Consensus 110 y~~LL~a~ak~-g~~d~A~~lf~~M~~~g 137 (670)
|.-++..+-.. =++..|...+..+...-
T Consensus 87 f~~~~~~l~Dl~lDiP~a~~~La~~v~~~ 115 (339)
T 1ug3_A 87 LYEILELAEDMEIDIPHVWLYLAELVTPI 115 (339)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHGGG
T ss_pred HHHHHhhChHhhcCccchHHHHHHHHHHH
Confidence 33333333322 25667777777776543
No 261
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=27.36 E-value=34 Score=31.74 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCC-C--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhc
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAP-L--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLG 627 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (670)
|.+=|.+|++.+..+||+|++.+. ..| . |...+.+|+....+=.. -...|.+++.+|.+.+
T Consensus 59 E~~HA~~l~~~i~~rgg~~~l~~i--------~~p~~~~~~~~~e~le~aL~~E~~-v~~~l~~l~~~a~~~~ 122 (173)
T 1rcd_A 59 EKEHAEKLIEYQNQRGGRVFLQSV--------EKPERDDWANGLEALQTALKLQKS-VNQALLDLHAVAADKS 122 (173)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCC--------CCCSCSCCCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeeecCCC--------CCCCccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 344599999999999999998774 233 1 12244444443333222 2345777777777644
No 262
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=26.45 E-value=65 Score=28.23 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcH-HHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPS-AFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
+.+-|-++.+++..+||+|....-...=...++.|... ....+|+...+ +++--...|.++|..|-+.|..
T Consensus 46 e~~had~laeri~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~-~e~~~~~~~~~~~~~a~~~~D~ 117 (142)
T 1ji5_A 46 SATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYGETAEGMVEAIMK-DYEMMLVELKKGMEIAQNSDDE 117 (142)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCCCCCTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCH
Confidence 44558888999999999998854222222224332110 12333333322 2334567888888888766554
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.98 E-value=3.7e+02 Score=24.25 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.-+..+-++.+.. ..+.|+.......|.+|-+.+++..|.++|+-++.+
T Consensus 69 ~wElrrglN~l~~--~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4455555666666 789999999999999999999999999999998864
No 264
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=25.33 E-value=28 Score=32.05 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhc-----------
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLG----------- 627 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 627 (670)
.+=|.++++.+..+||+|++.+.... +..| ...+..|+....+=..-. ..|.+++..|...|
T Consensus 51 ~~HA~~l~~~i~~~gG~~~l~~i~~p-----~~~~-~~~~e~l~~al~~E~~~~-~~~~~l~~~a~~~~D~~~~~~l~~~ 123 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVELQEVKQP-----EQNF-KSLLDVFEKTYEHEQFIT-KSINTLVEHMLTHKDYSTFNFLQWY 123 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCCCCCC-----CCCC-SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC-----CCCc-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCChhHHHHHHHH
Confidence 34499999999999999988653211 1111 223444444433332222 22666666665433
Q ss_pred ------hhHHHHHHHHHHHHhCCC
Q 005912 628 ------ELDAAVAIVADMETTGIA 645 (670)
Q Consensus 628 ------~~~~~~~~~~~~~~~~~~ 645 (670)
+.+..-.+++.++..|..
T Consensus 124 l~Eq~e~~~~l~~~l~~l~~~g~~ 147 (167)
T 1krq_A 124 VSEQHEEEALFRGIVDKIKLIGEH 147 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444555677777777764
No 265
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=25.03 E-value=1.3e+02 Score=27.81 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhch---------
Q 005912 558 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGE--------- 628 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 628 (670)
|.+-|.++++.+..+||+|++.+.... +..+ ......|+....+=.. -...|.+++..|-+.|.
T Consensus 64 E~~HA~~l~e~i~~lGG~p~l~~i~~p-----~~~~-~~~~e~le~aL~~E~~-~~~~~~~l~~~A~~~~D~~t~~~l~~ 136 (181)
T 3bvf_A 64 EYEHAKKLIIFLNENNVPVQLTSISAP-----EHKF-EGLTQIFQKAYEHEQH-ISESINNIVDHAIKSKDHATFNFLQW 136 (181)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCCC-----CCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCC-----CCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 445599999999999999987652110 1111 1233333333332222 44556666666655443
Q ss_pred --------hHHHHHHHHHHHHhCCC
Q 005912 629 --------LDAAVAIVADMETTGIA 645 (670)
Q Consensus 629 --------~~~~~~~~~~~~~~~~~ 645 (670)
-...-.+|+.++..|..
T Consensus 137 ~l~eqvEe~~~l~~~l~~l~~~g~~ 161 (181)
T 3bvf_A 137 YVAEQHEEEVLFKDILDKIELIGNE 161 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33345567777777864
No 266
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=24.91 E-value=43 Score=31.44 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCccChhc
Q 005912 558 EVELAIQIMLKVIELGGTPTIGD 580 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (670)
|.+-|.+|++.+..+||+|++.+
T Consensus 59 E~~HA~~l~~~i~~~Gg~~~l~~ 81 (184)
T 3qz3_A 59 EMQHMQRLFTYVSETGALPILGA 81 (184)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCcccCC
Confidence 44569999999999999999865
No 267
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.90 E-value=4.9e+02 Score=30.47 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
-..++...|+.|+-+-...|.++|....... ..+.||... .+...-.+.|..+.-..+++.......
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~~--------- 757 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQL--------- 757 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCCS---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccCC---------
Confidence 3567888888886555778889998876521 236777543 222333456776666666666655311
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.--+.++.+++...+.....++++.....+
T Consensus 758 --~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~ 788 (909)
T 4fke_A 758 --VNEADKLRSALACSNEVWLLNRYLGYTLNPD 788 (909)
T ss_dssp --HHHHHHHHHHHTTCCCHHHHHHHHHHTTCTT
T ss_pred --HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCC
Confidence 1134678888888888888888888766543
No 268
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=24.76 E-value=45 Score=30.82 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCccChhc
Q 005912 558 EVELAIQIMLKVIELGGTPTIGD 580 (670)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (670)
|.+-|.+||+.+...||+|++.+
T Consensus 49 E~~HA~kl~~~i~~rgg~~~l~~ 71 (168)
T 3e6s_A 49 EREHGLGFVDFANKRNIPIELQA 71 (168)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCccccCC
Confidence 44569999999999999998765
No 269
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=24.49 E-value=45 Score=29.94 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.+-|-++++.+..+||+|++.+.. +-+........|+..... ..--...|.+++..|-+.|..
T Consensus 54 ~~Had~l~e~i~~lGg~p~~~~~~-------~~~~~~~~~e~l~~~l~~-E~~~~~~~~~~~~~A~~~~D~ 116 (161)
T 3uoi_A 54 MRHAEEITDRILLLDGLPNYQRIG-------SLRIGQTLREQFEADLAI-EYDVLNRLKPGIVMCREKQDT 116 (161)
T ss_dssp HHHHHHHHHHHHHTTCCCCCSCCC-------CCCCCSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCCcCCCCC-------CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCH
Confidence 344888888899999999986521 111112233444444333 233566788888888776654
No 270
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=24.20 E-value=1.3e+02 Score=28.13 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCC--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhH
Q 005912 560 ELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPL--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 630 (670)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (670)
+-|-+|.+++..+||+|....-..+=.+.++.|. +.....+|+...+ ++..-...|.++|..|-+.|...
T Consensus 75 ~had~laErI~~LGg~p~~~~~~~~~~s~i~e~~~~~~~~~e~l~~~l~-~e~~~i~~~~~~i~~a~~~~D~~ 146 (192)
T 2vxx_A 75 DHVHALGERLNGLGGVPVAGFQQLAALCCFTPEPEGAFNCRQMLSNDLQ-AEQAIIGVLRQQATQAESLGDRA 146 (192)
T ss_dssp HHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCCCCSSBCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHCcCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHH
Confidence 4477888889999999998654443334445322 2223344444433 23556788999999998776543
No 271
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=24.02 E-value=3e+02 Score=24.06 Aligned_cols=85 Identities=8% Similarity=-0.029 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE---AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~---A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+..+.+-|.+... .|. |+..|--.+-.+++++..... +..++..+.+.+.+..-. +..-.|--+|.|
T Consensus 17 l~~~~~~y~~e~~--~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R-------d~lY~LAvg~yk 86 (126)
T 1nzn_A 17 LLKFEKKFQSEKA--AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR-------DYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHH--HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHHH
Confidence 4444455555544 333 666666666678888887766 889998887743110000 022235557899
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|.+.++.+.+..
T Consensus 87 lg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999999998864
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.62 E-value=4.1e+02 Score=23.90 Aligned_cols=71 Identities=10% Similarity=-0.016 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVK-TYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 64 ~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
.|+..|-=..--++++..+-.+..+++.++++... .+ | +.. ..=.|--||.+.|+++.|++..+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45655544445567777765578899999999876 22 3 233 333455689999999999999999988643
No 273
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.42 E-value=8.6e+02 Score=29.06 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-------
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN------- 106 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd------- 106 (670)
..|+..+.+.+..+.|..+....+ .+..+-=.+=.+|...| +.++|.++|.+-. .++.++
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-------~~~~~~yl~g~~~L~~g---e~~~A~~~F~kaa---~~~~~~~~l~~~~ 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-------SDPIAVYLKALIYLKSK---EAVKAVRCFKTTS---LVLYSHTSQFAVL 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-------CCHHHHHHHHHHHHHTT---CHHHHHHHHHTCC---CSCTTCCCSCSSH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-------CCcHHHHHHHHHHHhcC---CHHHHHHHHHHHh---hhhcccchhhhhh
Confidence 346666777788888877766555 23333222334456778 7889999997642 122111
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC--cccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 107 ----------------VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT--KVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 107 ----------------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~--~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
..=|.-++..|-+.+.++.+.++-....+...+. ++. ...|+.+++++...|++++
T Consensus 883 ~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~------~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 883 REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLS------IAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHH------HHHHHHHHHHHHHHCCSGG
T ss_pred cccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhH------HHHHHHHHHHHHhhCCHHH
Confidence 1225667778888888888877766555432110 000 0158888999999999999
Q ss_pred HHHHHHHHhhCCC
Q 005912 169 LLEALEAMAKDNQ 181 (670)
Q Consensus 169 A~~vf~~M~~~gi 181 (670)
|...+-.+.....
T Consensus 957 Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 957 AHVALMVLSTTPL 969 (1139)
T ss_dssp GGHHHHHHHHSSS
T ss_pred HHHHHHhCCCHHH
Confidence 9999888876554
No 274
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=22.17 E-value=1.1e+02 Score=28.22 Aligned_cols=81 Identities=7% Similarity=-0.099 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCccChhcH--HHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccH--HHHHHHHhhhchhHHHHHHHHH
Q 005912 563 IQIMLKVIELGGTPTIGDC--AVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY--DEIISLCLDLGELDAAVAIVAD 638 (670)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+++++.+++.|..|+..+. .+.|+.|++...++.+. ...+.|..++.+-. ..++..+...|+. .++..
T Consensus 138 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~ 209 (223)
T 2f8y_A 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK----VLLDHFANRDITDHMDRLPRDIAQERMHH----DIVRL 209 (223)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHH----HHHHcCCCCccccccCCCHHHHHHHhcch----HHHHH
Confidence 3456667788888876643 35677777777776443 33455776665432 2356666667765 47788
Q ss_pred HHHhCCCCCchhH
Q 005912 639 METTGIAVPDQTL 651 (670)
Q Consensus 639 ~~~~~~~~~~~~~ 651 (670)
|.+.|...+++..
T Consensus 210 L~~~g~~~~~~~~ 222 (223)
T 2f8y_A 210 LDEYNLVRSPQLH 222 (223)
T ss_dssp HHHTTCSSCC---
T ss_pred HHHcCCCcccccC
Confidence 8899998887754
No 275
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=22.14 E-value=96 Score=28.88 Aligned_cols=61 Identities=8% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCC--cHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhch
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPL--PSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGE 628 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (670)
.+-|-++++.+..+||+|++.. ++.|. |......|+..... .+--...|.+++..|-+.|.
T Consensus 56 ~~Had~laeri~~lGg~p~~~~--------i~~~~~~~~~~~e~l~~~l~~-E~~~~~~~~~l~~~A~~~~D 118 (189)
T 3oj5_A 56 RNHAMMLVQHLLDRDLRVEIPG--------VDTVRNQFDRPREALALALDQ-ERTVTDQVGRLTAVARDEGD 118 (189)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC--------BCCCCCCCSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCeecCC--------CCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 3448899999999999998744 22221 11123333333322 22245667777777766554
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=21.99 E-value=1.6e+02 Score=29.61 Aligned_cols=119 Identities=12% Similarity=-0.025 Sum_probs=73.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+..+.+.|+++.|+.-...-.+. -.-|...=..|+..||-.|++++|..-++...+-.....|-..+|..+|.|=....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~ 82 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 34567889999999888766654 34577777889999999999999988887766311222334456666665532211
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-----NVKTYALLVECFT--KYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-----d~~Ty~~LL~a~a--k~g~~d~A~~lf~~M~~~ 136 (670)
++|. .+-.| ...-...|+.+.. ..|+.+.|.++-......
T Consensus 83 ---------~vfa------G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 83 ---------DFAQ------GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---------HHTT------SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------HHHc------CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1221 12112 2223344555544 468888888887777553
No 277
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=21.72 E-value=54 Score=30.52 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCCChHHHHHHhhhccCCcchhhHHH-HHHhc---chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhc
Q 005912 508 FPEDPFEAFKEMRKRKVFDVSDMYTI-ADAWG---WTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGD 580 (670)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (670)
+...+.+++.......+ .-|..|-. |-.+. |....- .+. -..-|+ =|.+-|.+||+.+...||.|++.+
T Consensus 9 ~~~~v~~~LN~qin~El-~As~~Yl~ma~~f~~~d~~l~g~-a~~-f~~~s~-EE~~HA~kl~~~i~~rgg~~~l~~ 81 (176)
T 3ka8_A 9 YHSDCEAAVNRMLNLEL-YASYTYSSMYAFFDRDDVALHNV-AEF-FKEHSH-EEREHAEKFMKYQNKRGGRVVLQD 81 (176)
T ss_dssp CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSTTTCCHHH-HHH-HHHHHH-HHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCcHHH-HHH-HHHHHH-HHHHHHHHHHHHHHHcCCCeeeCc
Confidence 45566677777777664 44554433 32221 111100 000 001121 244559999999999999998765
No 278
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.23 E-value=1.5e+02 Score=25.77 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCccChhcHH--HHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHH--HHHHHHhhhchhHHHHHHHHH
Q 005912 563 IQIMLKVIELGGTPTIGDCA--VIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYD--EIISLCLDLGELDAAVAIVAD 638 (670)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+++++.+++.|..|+..+.. +.|+.|++...++.+. ...+.|..++.+... .++...+..|+.+ ++..
T Consensus 55 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~ 126 (165)
T 3twr_A 55 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE----LLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKL 126 (165)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHH----HHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHH
Confidence 35667777889888877653 5677777777777333 334457776654332 3556666677654 5555
Q ss_pred HHHhCCCCC
Q 005912 639 METTGIAVP 647 (670)
Q Consensus 639 ~~~~~~~~~ 647 (670)
|-+.|..+.
T Consensus 127 Ll~~ga~~~ 135 (165)
T 3twr_A 127 LLQHGADPT 135 (165)
T ss_dssp HHHTTCCTT
T ss_pred HHHcCCCCc
Confidence 667787654
No 279
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.10 E-value=5.7e+02 Score=24.70 Aligned_cols=247 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHF--NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~ty--n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
|...++.|+.+....++.. .|..++.... ++.|..-+..|+++-+..+++.=. .--.+|..-++.|..+...
T Consensus 28 L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA---DVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHC
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch------
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYA--LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD------ 151 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~--~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd------ 151 (670)
.. .++++.+.+ .|..++..... +.|...+..|+.+ +.+.+.+.|..+......|..|-
T Consensus 102 g~--------~~iv~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~ 167 (351)
T 3utm_A 102 GH--------YEVTELLLK--HGACVNAMDLWQFTPLHEAASKNRVE----VCSLLLSHGADPTLVNCHGKSAVDMAPTP 167 (351)
T ss_dssp TC--------HHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred CC--------HHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCccccCCCCcchHHHhhh
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHH------
Q 005912 152 ---------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEID------ 216 (670)
Q Consensus 152 ---------tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd------ 216 (670)
....-+...+..+..+....++..-.............+.+.....-....+++..+.+.|..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g 247 (351)
T 3utm_A 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC
T ss_pred hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCC
Q ss_pred --HHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 217 --YIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 217 --~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
.+..++..+.. .+.+.+.+.|..++.....-.+.+ ..-++.|+.+-+.-|++
T Consensus 248 ~t~L~~A~~~g~~-----~~v~~Ll~~ga~~n~~d~~g~t~L----~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 248 MTPLHVAAERAHN-----DVMEVLHKHGAKMNALDSLGQTAL----HRAALAGHLQTCRLLLS 301 (351)
T ss_dssp CCHHHHHHHTTCH-----HHHHHHHHTTCCTTCCCTTSCCHH----HHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHcCCH-----HHHHHHHHCCCCCCCcCCCCCCHH----HHHHHcCcHHHHHHHHH
No 280
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=20.75 E-value=57 Score=29.26 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchh
Q 005912 559 VELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGEL 629 (670)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.+-|-++...+..+||+|++.+... -+.+.....+|+.....= .--...|.+++..|-+.|..
T Consensus 52 ~~Had~l~eri~~lGg~p~~~~~~~-------~~~~~~~~e~l~~~l~~E-~~~~~~~~~~~~~A~~~~D~ 114 (161)
T 3gvy_A 52 MHHADKLIQRIIFLGGHPNLQRLNP-------LRIGQTLRETLDADLAAE-HDARTLYIEARDHCEKVRDY 114 (161)
T ss_dssp HHHHHHHHHHHHHTTCCCCCSCCCC-------CCCCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHCCCCCccCCCCC-------CCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCH
Confidence 3447888888999999999854321 111122333444333321 22456777888877766654
No 281
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.66 E-value=4e+02 Score=25.67 Aligned_cols=220 Identities=10% Similarity=-0.061 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhC-------CCC-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYG-------EDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 100 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~-------~~g-i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~ 100 (670)
......+.++..+..|+.....++....+.. ..+ ...|..-++.|. ..+..| +.+- ++.+.+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g---~~~~----v~~Ll~-- 80 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHG---HQLS----LRNLIS-- 80 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTT---CHHH----HHHHHH--
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcC---CHHH----HHHHHH--
Confidence 3444577888889999988777765543210 111 122333344444 445566 3433 333444
Q ss_pred CCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 101 KRLQPNVKT--YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 101 ~gi~Pd~~T--y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.|..++... -.+.|...+..|+.+-+..++ +.|..++.....|. +-+...+..|+.+-+..+ .+
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~------t~L~~A~~~~~~~~v~~L----l~ 146 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILL----KHGAQVNGVTADWH------TPLFNACVSGSWDCVNLL----LQ 146 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH----HTTCCSSCCCTTCC------CHHHHHHHHTCHHHHHHH----HH
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH----HCCCCCCCCCCCCC------CHHHHHHHcCHHHHHHHH----HH
Confidence 444443221 123444556778876555444 45655544433332 233444566776544444 44
Q ss_pred CCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHH-------HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccch
Q 005912 179 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY-------IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFI 251 (670)
Q Consensus 179 ~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~-------i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~t 251 (670)
.|..+..+.--......+......++++.+.+.|..++. ...+.+..|..+-.+.++ +.|..++.+..-
T Consensus 147 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~g 222 (285)
T 3d9h_A 147 HGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQ 222 (285)
T ss_dssp TTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH----HCCCCCCCCCCC
Confidence 444322211100000111122223566667777776552 123344555665444443 446666654444
Q ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 252 YSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 252 y~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
.+.| ...++.|+.+.+ +.+.+.|..
T Consensus 223 ~t~L-----~~A~~~~~~~~v----~~Ll~~gad 247 (285)
T 3d9h_A 223 DSPL-----HAVVRTASEELA----CLLMDFGAD 247 (285)
T ss_dssp BCHH-----HHHHHTTCHHHH----HHHHHTTCC
T ss_pred CCHH-----HHHHHcCCHHHH----HHHHHCCCC
Confidence 4444 344667776544 334445554
Done!