BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005913
(670 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 142/252 (56%), Gaps = 22/252 (8%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHY 477
GHS V+ +FSP G I S+S D T++LW+ N L+ GH+ VW V F+P G
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
AS+S D+T ++W+ + Q L+ + GH S V V + + IA+ S DKTV+LW+ +G
Sbjct: 195 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 252
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ ++ GH S + +A PDG+ +AS +D T+ +W+ +G+ + L GH+S VW +A+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 311
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
S +G +AS S D TVKLW+ ++G + L+TL S+ V+ + FS
Sbjct: 312 SPDGQTIASASDDKTVKLWN------------RNG----QHLQTLTGHSSSVWGVAFSPD 355
Query: 658 NLLFAAGALSKT 669
A+ + KT
Sbjct: 356 GQTIASASDDKT 367
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 6/201 (2%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGH 476
+ HS V +FSP G I S+S D T++LW+ N L+ GH+ VW V F+P G
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
AS+S D+T ++W+ + Q L+ + GH S V V + + IA+ S DKTV+LW+ +
Sbjct: 71 TIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
G+ ++ GH S + +A SPDG+ +AS +D T+ +W+ +G+ + L GH+S VW +A
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 597 YSCEGSLLASGSADCTVKLWD 617
+S +G +AS S D TVKLW+
Sbjct: 188 FSPDGQTIASASDDKTVKLWN 208
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 150/277 (54%), Gaps = 26/277 (9%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT------TPREDIIGPNGRK 411
+ S DG +A D ++K+W+ + GQ + L G + + +P I
Sbjct: 310 AFSPDGQTIASASDDKTVKLWN--RNGQHLQT--LTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 412 RSYTLYQ----------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYK 460
++ L+ GHS V +FSP G I S+S D T++LW+ N L+
Sbjct: 366 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLT 423
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
GH+ VW V F+P AS+S D+T ++W+ + Q L+ + GH S V V + + I
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTI 482
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
A+ S DKTV+LW+ +G+ ++ GH S + +A SPDG+ +AS +D T+ +W+ +G+
Sbjct: 483 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 540
Query: 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
+ L GH+S VW +A+S +G +AS S+D TVKLW+
Sbjct: 541 LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 177/358 (49%), Gaps = 57/358 (15%)
Query: 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV 388
RNR+ S+++ V+F S DG +A D ++K+W+ + GQ +
Sbjct: 9 RNRLEAHSSSVRGVAF---------------SPDGQTIASASDDKTVKLWN--RNGQ--L 49
Query: 389 SSGLQGENDT------TPREDIIGPNGRKRSYTLYQ----------GHSGPVYSASFSPL 432
L G + + +P I ++ L+ GHS V +FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 109
Query: 433 GDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
G I S+S D T++LW N L+ GH+ VW V F+P G AS+S D+T ++W+
Sbjct: 110 GQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551
+ Q L+ + GH S V V + + IA+ S DKTV+LW+ +G+ ++ GH S +
Sbjct: 168 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611
+A SPDG+ +AS +D T+ +W+ +G+ + L GH+S V +A+ +G +AS S D
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
TVKLW+ ++G + L+TL S+ V+ + FS A+ + KT
Sbjct: 285 TVKLWN------------RNG----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 141/277 (50%), Gaps = 39/277 (14%)
Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
T + +N + DG +A D ++K+W+
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN------------------------ 290
Query: 404 IIGPNGRKRSYTLYQ---GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
R+ L Q GHS V+ +FSP G I S+S D T++LW+ + +L
Sbjct: 291 --------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLT 341
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
GH+ VW V F+P G AS+S D+T ++W+ + Q L+ + GH S V V + + I
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTI 400
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
A+ S DKTV+LW+ +G+ ++ GH S + +A SPD + +AS +D T+ +W+ +G+
Sbjct: 401 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQ 458
Query: 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
+ L GH+S V +A+S +G +AS S D TVKLW+
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 32/246 (13%)
Query: 406 GPNGRKR-----------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
GP G+KR Y L GH PV F P+ ++S+S D TI++W +
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
KGH V D+ F+ G AS S D T ++W + +R M GH +V V
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
N ++I + S DKT+++W+V +G CV+ F GHR + + + DG +AS D T+ +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 575 DLASGRCVTPLMGHTSCVWTLAYSCE--------------------GSLLASGSADCTVK 614
+A+ C L H V ++++ E G L SGS D T+K
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 615 LWDVTT 620
+WDV+T
Sbjct: 322 MWDVST 327
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 48/280 (17%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S G L+A +D ++K+WD G + + +
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQ--GFECIRT--------------------------M 188
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH V S S P GD I+S+S D TI++W + + + GH V V+ N G
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY------------------ 519
AS S+D+T R+W + + + H V+C+ W +Y
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 520 --IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577
+ +GS DKT+++WDVS+G C+ +GH + + + G+++ S +D T+ +WD
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
+ RC+ L H V +L + + +GS D TVK+W+
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
TF + +QDG+L+A +D +++VW +A + + L+ E+
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA---TKECKAELR-EHRHVVECISW 284
Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
P SY+ +G S P G F+LS S D TI++W L+ GH+
Sbjct: 285 APES---SYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
V V F+ G + S + D+T R+W + ++ + H V + +H Y+ TGS
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 526 DKTVRLWD 533
D+TV++W+
Sbjct: 401 DQTVKVWE 408
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
G G + T + + PN + +TL GH+ V S FSP G+++ SSSAD I++W
Sbjct: 1 GAMGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
GH + DV ++ + S+S D+T +IW + + L+ + GH + V C
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
++ N I +GS D++VR+WDV +G+C++ H + ++ + DG + S DG
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
+WD ASG+C+ L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 104
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 172
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 30 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 253
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 35/280 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 121
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 122 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ + + V V++ N YI
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
V L GHT V + A +++AS + D T+KLW
Sbjct: 293 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 163 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 28 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 251
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 35/280 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 119
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 120 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ + + V V++ N YI
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
V L GHT V + A +++AS + D T+KLW
Sbjct: 291 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 161 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
G G + T + + PN + +TL GH+ V S FSP G+++ SSSAD I++W
Sbjct: 1 GPLGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
GH + DV ++ + S+S D+T +IW + + L+ + GH + V C
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
++ N I +GS D++VR+WDV +G+C++ H + ++ + DG + S DG
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
+WD ASG+C+ L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 104
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 23 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 246
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 115
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 296 TDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 156 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 12 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 104
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ ++ V V++ N YI + D T++L
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 7 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 66
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 230
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 99
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 280 TDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 140 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 2 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 225
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 94
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 275 TDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ LKTLP S PV ++ F+R L + +
Sbjct: 135 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 11 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 70
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 234
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 103
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 284 TDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 144 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 171
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ + PN + +TL GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 10 EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
GS D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 126/269 (46%), Gaps = 34/269 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKL 615
T V + A +++AS + D T+KL
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKL 310
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH + ++S + ++S+S D T+++W L KGH+ V+ FNPQ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S S D + RIW + + L+ + H V V ++ + + I + S D R+WD +SG+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 539 CVRIFIGHRSMILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS---CVWT 594
C++ I + +S SP+G+Y+ + D T+ +WD + G+C+ GH + C++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628
G + SGS D V +W++ T V K +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ + PN + +TL GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 10 EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
GS D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KL+
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH + ++S + ++S+S D T+++W L KGH+ V+ FNPQ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S S D + RIW + + L+ + H V V ++ + + I + S D R+WD +SG+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 539 CVRIFIGHRSMILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS---CVWT 594
C++ I + +S SP+G+Y+ + D T+ +WD + G+C+ GH + C++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628
G + SGS D V +W++ T V K +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%)
Query: 405 IGPNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
+G K +Y L GH+ V S FSP G+++ SSSAD I++W G
Sbjct: 3 LGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 62
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
H + DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
+GS D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 582 VTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
+ L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 228
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 97
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 278 TDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 138 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 165
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
LKTLP S PV ++ F+R L + +
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ + PN + +TL GH+ V S FSP G+++ +SSAD I++W GH
Sbjct: 10 EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
GS D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D T+KLWD + K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH + ++S + ++S+S D T+++W L KGH+ V+ FNPQ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S S D + RIW + + L+ + H V V ++ + + I + S D R+WD +SG+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 539 CVRIFIGHRSMILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS---CVWT 594
C++ I + +S SP+G+Y+ + D T+ +WD + G+C+ GH + C++
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628
G + SGS D V +W++ T V K +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
+ LKTLP S PV ++ F+R L +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
L+ + V + +S G + + + D +KLWD + K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKT 232
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 34/270 (12%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D ++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCVWTLAYSCEGSLLASGSA--DCTVKLW 616
T V + A +++AS + D T+KLW
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ S +D T+ +WD++SG+C+ L GH++ V+ ++ + +L+ SGS D +V++WDV T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
LKTLP S PV ++ F+R L + +
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 9/212 (4%)
Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +S + +GH V + G+ I+S S D T+++WS L GH VW
Sbjct: 106 GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
Q + + S S DRT ++W+ + + + + GH S V C+ H++ + +GS D T
Sbjct: 165 SQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM--HLHEKRVVSGSRDAT 220
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+R+WD+ +G+C+ + +GH + + + DGR + SG D + +WD + C+ L GH
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
T+ V++L + +G + SGS D ++++WDV T
Sbjct: 279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVET 308
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 37/323 (11%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420
G+ + G D++LKVW A G+ + + G + R++II R+ ++
Sbjct: 129 GNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 421 SGPVYSASFSPLGDF---------ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
+G + ++S S D T+R+W + L GH V VQ+
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
+ G S ++D ++W + L + GH + V ++ + ++ +GS D ++R+
Sbjct: 248 D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRV 303
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---H 588
WDV +G C+ GH+S L+ M + SG+ D T+ +WD+ +G+C+ L G H
Sbjct: 304 WDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648
S V L ++ + + + S D TVKLWD LKT E +R+L TL + +
Sbjct: 362 QSAVTCLQFN--KNFVITSSDDGTVKLWD-------LKTGE-----FIRNLVTLESGGSG 407
Query: 649 --VYSLQFSRRNLLFAAGALSKT 669
V+ ++ S L+ A G+ + T
Sbjct: 408 GVVWRIRASNTKLVCAVGSRNGT 430
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 49/152 (32%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAK-------LGQQAVSSGLQGENDTTPREDIIGPNGR 410
S+ DG V G D+S++VWD+ G Q+++SG++ ++
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-------------- 329
Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG---HNYPVW 467
+ ++S +AD+T+++W K L +G H V
Sbjct: 330 -----------------------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 468 DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499
+QFN ++ +SS D T ++W + + +R
Sbjct: 367 CLQFNK--NFVITSSDDGTVKLWDLKTGEFIR 396
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 63/310 (20%)
Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
+L++++ PS Y + S DG +A G D +++WD+
Sbjct: 113 NLNTSSSPSSDLY--------IRSVCFSPDGKFLATGAEDRLIRIWDI------------ 152
Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
EN ++ + QGH +YS + P GD ++S S D T+R+W +
Sbjct: 153 --EN--------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 453 NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS------MDRIQPLRIMA-GH 504
+ + V V +P G Y A+ S DR R+W ++R+ GH
Sbjct: 197 GQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDV------------SSGECVRIFIGHRSMILS 552
V V + + + +GS D++V+LW++ +SG C +IGH+ +LS
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL------LAS 606
+A + + Y+ SG +D ++ WD SG + L GH + V ++A + SL A+
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 607 GSADCTVKLW 616
GS DC ++W
Sbjct: 376 GSGDCKARIW 385
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
V F+P G + A+ + DR RIW ++ + + I+ GH D+ + + + + + +GS D+T
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPL-- 585
VR+WD+ +G+C + + + ++A+SP DG+Y+A+G D + +WD +G V L
Sbjct: 189 VRIWDLRTGQC-SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 586 -----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
GH V+++ ++ +G + SGS D +VKLW++
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
++ATG+ D+ +R+WD+ + + V I GH I SL P G + SG D T+ +WDL +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRL 636
G+C L +G +A+GS D V++WD T V L +E +SGT
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
S VYS+ F+R +G+L ++
Sbjct: 257 DS----------VYSVVFTRDGQSVVSGSLDRS 279
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 19/135 (14%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--------------- 548
H S V CV++ + Y+ATG +KT +++ VS G V +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 549 ---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
I S+ SPDG+++A+G ED I +WD+ + + V L GH +++L Y G L
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 606 SGSADCTVKLWDVTT 620
SGS D TV++WD+ T
Sbjct: 182 SGSGDRTVRIWDLRT 196
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
++DG V G D S+K+W+ LQ N+ + D PN T Y
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWN------------LQNANN---KSDSKTPNSGTCEVT-YI 307
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV------QFN 472
GH V S + + ++ILS S D + W K L+ +GH V V
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 367
Query: 473 PQGHYFASSSHDRTARIWSMDRIQP 497
P+ + FA+ S D ARIW +I P
Sbjct: 368 PEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 49/308 (15%)
Query: 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
T G+ C + D + G D+++K+WD L + + +G
Sbjct: 132 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG------------------ 171
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
H+G V + I++ S+D+T+R+W L H V +
Sbjct: 172 ----------HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 470 QFNPQGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
+FN + S DR+ +W M I R++ GH + V+ V + YI + S D
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGD 275
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
+T+++W+ S+ E VR GH+ I L R + SG D TI +WD+ G C+ L
Sbjct: 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 333
Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
GH V + + + + SG+ D +K+WD+ + L +GT L+TL S
Sbjct: 334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA---LDPRAPAGT---LCLRTLVEHS 385
Query: 647 TPVYSLQF 654
V+ LQF
Sbjct: 386 GRVFRLQF 393
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 11/246 (4%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GHS V S G F LS S D +RLW + + GH V V F+
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHINC--NYIATGSSDKTVRLWD 533
S+S DRT ++W+ I G H V CVR+ N I + S DKTV++W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
+S+ + GH + ++A+SPDG ASG +DG +++WDLA G+ + L + S +
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIH 606
Query: 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVY- 650
L +S L + + + +K+WD+ + + V LK + K+ + + TK +Y
Sbjct: 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 651 -SLQFS 655
SL +S
Sbjct: 666 TSLNWS 671
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 56/285 (19%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
+S DG G D L++WD+A G + R+ +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAA-----------------------GVSTRR-----FV 469
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG 475
GH+ V S +FS I+S+S D TI+LW+T +GH V V+F+P
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 476 --HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
S+S D+T ++W++ + +AGH V V + + A+G D V LWD
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Query: 534 VSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--------- 583
++ G+ +++ + S+I +L SP+ ++ + E G I +WDL S V
Sbjct: 590 LAEGK--KLYSLEANSVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAE 646
Query: 584 --------PLMGHTSCVW--TLAYSCEGSLLASGSADCTVKLWDV 618
P ++ +L +S +GS L SG D +++W +
Sbjct: 647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 516 NCNYIATGSSDKTVRLW-----DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
N + I + S DK++ LW D + G R GH + + +S DG++ SG DG
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630
+ +WDLA+G +GHT V ++A+S + + S S D T+KLW+ K +E
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 631 SG 632
G
Sbjct: 514 EG 515
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 84/206 (40%), Gaps = 52/206 (25%)
Query: 478 FASSSHDRTARIWSMDRIQPL-----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
S+S D++ +W + + R + GH V+ V + + +GS D +RLW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM------------------- 573
D+++G R F+GH +LS+A S D R + S D TI +
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 574 ----------------------------WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
W+L++ + + L GHT V T+A S +GSL A
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
SG D V LWD+ K+ E S
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSLEANS 603
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHD 484
+++P G + S D IR+W T+ ++ + V +GH V V ++P G+Y AS+S D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 485 RTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---EC 539
T IW + D + + + GH ++V V W + N +AT S DK+V +W+V EC
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTLAY 597
V + H + + P +AS D T+ ++ + C L GH S VW+LA+
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 598 SCEGSLLASGSADCTVKLW 616
G LAS S D TV++W
Sbjct: 203 DPSGQRLASCSDDRTVRIW 221
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
L +GH V ++SP G+++ S+S D T +W K + C +GH V V +
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWA 114
Query: 473 PQGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
P G+ A+ S D++ +W + D + + ++ H DV V WH + +A+ S D TV
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 530 RLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL----------- 576
+L+ + C GH S + SLA P G+ +AS +D T+ +W
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234
Query: 577 ----ASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKL 615
S +C+ L G H+ ++ +A+ LA+ D +++
Sbjct: 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
W + +NP G AS DR RIW + I + GH V V W NY+A+
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 523 GSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG- 579
S D T +W + ECV GH + + S+A +P G +A+ D ++ +W++
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 580 --RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
CV+ L HT V + + LLAS S D TVKL
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 513 WHINCNYIATGSSDKTVRLWDV--SSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDG 569
W+ +A+ D+ +R+W S C + GH+ + +A SP G Y+AS D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 570 TIMMW--DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
T +W + CVT L GH + V ++A++ G+LLA+ S D +V +W+V
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 45/215 (20%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT------PREDIIGPNGRKRSYTL 416
G+L+A D S+ VW++ + + S L P ++++ + L
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 417 Y-------------QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------- 455
Y +GH V+S +F P G + S S D T+R+W L N
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236
Query: 456 ------LVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIW----SMDRIQPLRIMAG 503
+C H+ ++D+ + A++ D R++ + D QP +
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296
Query: 504 HL-----SDVDCVRWHIN-CNYIATGSSDKTVRLW 532
HL DV+CV W+ +A+ S D V W
Sbjct: 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLA--SGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSA 609
LA +P G +AS D I +W S C + L GH V +A+S G+ LAS S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 610 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
D T +W T + N ++S+ P+
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|B Chain B, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|C Chain C, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|D Chain D, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|E Chain E, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
Length = 138
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 68 QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
+ Y L++W SLDL+K++LL +LYP+FIH + DL+ + EA+ FF +R DH
Sbjct: 9 ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YN 67
Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIIN 187
++++ E + + H+ E FA++ ++SK ++ + +Y+++LL+ +L + T +L I+N
Sbjct: 68 KSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 127
Query: 188 ERINFQVSPG 197
+ ++ +V G
Sbjct: 128 QHLDIKVYVG 137
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 9/212 (4%)
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
+K+S + H+ + + SF+ IL++S D T LW + L + GH V +
Sbjct: 146 KKKSVAM---HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202
Query: 470 QFNPQ--GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK 527
P G+ F S D+ A +W M Q ++ H SDV+ VR++ + + A+GS D
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA 262
Query: 528 TVRLWDVSSGECVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
T RL+D+ + V I+ S+I S+ S GR + +G D TI +WD+ G V+
Sbjct: 263 TCRLYDLRADREVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
L GH + V TL S +G+ SGS D T+++W
Sbjct: 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
R + +G K TL +GH V + I+SSS D + +W + K
Sbjct: 45 RVEALGQFVMKTRRTL-KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNK 98
Query: 461 GHNYP-----VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
H V + P G A D ++ + + + A S V H
Sbjct: 99 EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS----VAMHT 154
Query: 516 N----CNY------IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--GRYMA 563
N C++ I T S D T LWDV SG+ ++ F GH + +L L ++P G
Sbjct: 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
SG D M+WD+ SG+CV H S V ++ Y G ASGS D T +L+D+ +
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 624 V 624
V
Sbjct: 275 V 275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT-----PREDIIGP---NGRK 411
S+ G+ G D VWDM Q V + E+D P D +
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Query: 412 RSYTLYQGHSGPVYS----------ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
R Y L +YS FS G + + D TI +W + + G
Sbjct: 265 RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
H V ++ +P G F S S D T R+W+
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
+GH S + TL S +G+L+AS D + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG I +W+LA+ +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATA 257
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 545 GHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS-----GRCVTPLMGHTSCVWTLAYS 598
GH + SLA S + S D T++ W L G V GH+ V +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 599 CEGSLLASGSADCTVKLWDVTT 620
+G+ S S D T++LWDV T
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT 96
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
++ F+ + + I + S + G D ++KVW + GQ + L G ND +
Sbjct: 99 TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 403 DII---------------GPNGRKRSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
++ G + +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDVSSG 537
LR AG+ + + W + + G +D +R+W V +
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
+GH S + TL S +G+L+AS D + LW++ +++ TL +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
V+SL FS AA
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATA 257
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
+GH S + TL S +G+L+AS D + LW++ +++ TL +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
V+SL FS AA
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATA 257
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLW 532
LR AG+ + + W + + G +D +R+W
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
+GH S + TL S +G+L+AS D + LW++ +++ TL +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
V+SL FS AA
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATA 257
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
+GH S + TL S +G+L+AS D + LW++ +++ TL +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
V+SL FS AA
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATA 257
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
+GH+G V S A+ + + +LS+S D T+ W K + +KGH++ V D
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 67
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G Y S+S D+T R+W + + + GH SDV V + I +GS DKT+++
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
W + G+C+ +GH + + + P D + S D + W+L +
Sbjct: 128 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
+GH S + TL S +G+L+AS D + LW++ +++ TL +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 231
Query: 646 STPVYSLQFSRRNLLFAAG 664
V+SL FS AA
Sbjct: 232 D-EVFSLAFSPNRYWLAAA 249
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 167
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSA 609
L V++LA+S LA+ +A
Sbjct: 228 LSAQDE-VFSLAFSPNRYWLAAATA 251
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 93 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 148
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 208
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 266
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 267 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
GH G V++ ++ G ++S S D T+R+W K ++GHN V D+
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPLR------------IMAGHLSDVDCVRW 513
Y + S D T +W + + PL ++ GH++ V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
H N + +GS D T+ +WDV+ +C+ I GH I S + + S D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
WDL +G + L GHT+ V L S L S +AD +++ WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+++++ + D IR++ + L+ GH+ VW +++ G S S DRT R+W +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
+ + GH S V C + + N YI TGS D T+ +W + GE
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V + GH + + + +S G + SG D T+++WD+A +C+ L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
T +++ Y E S S D T+++WD+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 54/290 (18%)
Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
F ++ H+G A G ++ G +D +++VWD+ K + +G N T D
Sbjct: 154 FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLD 210
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGH 462
I+ K +I++ S D T+ +W +++ + + H
Sbjct: 211 IVEYKNIK-----------------------YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 463 NYPVWDVQFNPQ----------------------GHYFASSSHDRTARIWSMDRIQPLRI 500
+YP+ V P+ G+ S S+D T +W + +++ L I
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
++GH + + + S D T+R+WD+ +GE + GH +++ L +S +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K 363
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610
++ S DG+I WD A+ HT+ + ++L SGS +
Sbjct: 364 FLVSAAADGSIRGWD-ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 412
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
GH + +++ D Y+ +G +D I ++D + + + L GH VW L Y+ G +L
Sbjct: 119 GHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
++S G++V G D++L VWD+A++ + +
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQM----------------------------KCLYIL 306
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH+ +YS + +S+S DTTIR+W + + +GH V ++ + + +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--F 364
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSS 536
S++ D + R W + R + H +++ + ++++ N + +GS ++ ++++ S
Sbjct: 365 LVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRS 421
Query: 537 GECV 540
G+ V
Sbjct: 422 GKLV 425
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 406 GPNGRKRS----YTL----YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV 457
GPN + S Y L +GHS V + S G+F +S+S D ++RLW+ +
Sbjct: 44 GPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY 103
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWH- 514
+ GH V V F+P S D R+W++ + + + ++ H V CVR+
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162
Query: 515 -INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
++ I +G D V++WD+++G V GH + + S+ +SPDG AS D+DG +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 574 WDLASGRCVTPL 585
WDL G ++ +
Sbjct: 223 WDLTKGEALSEM 234
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
+GH+ V DV + G++ S+S D + R+W++ Q GH DV V + +
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 520 IATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSP--DGRYMASGDEDGTIMMWD 575
I +G D +R+W+V GEC+ H + + SP D + SG D + +WD
Sbjct: 124 IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
LA+GR VT L GHT+ V ++ S +GSL AS D +LWD+T
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
P R + GH + V V N N+ + S D ++RLW++ +G+C F+GH +LS+A S
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHT---SCVWTLAYSCEGSLLASGSADC 611
PD R + SG D + +W++ G C+ L HT SCV + S + ++ SG D
Sbjct: 119 PDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCV-RFSPSLDAPVIVSGGWDN 176
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
VK+WD+ T L T+ K TN + S+ P S
Sbjct: 177 LVKVWDLATGR--LVTDLKGHTNYVTSVTVSPDGS 209
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-- 473
+ GH+ V S +FSP I+S D +R+W+ K +G H V V+F+P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
S D ++W + + + + GH + V V + + A+ D RLWD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH----- 588
++ GE + + + I + SP+ +M + E G I ++DL + + L
Sbjct: 225 LTKGEALS-EMAAGAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSK 282
Query: 589 ---TSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
CV ++A+S +GS L SG D +++W V+
Sbjct: 283 KIVPECV-SIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 38/242 (15%)
Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
Y F+ + + S D + G D++L+VW++ +S G
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG------------- 149
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
H+ V FSP D I+S D +++W + KGH
Sbjct: 150 --------------AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH 195
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
V V +P G ASS D AR+W + + + L MA + ++ + + N Y
Sbjct: 196 TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG-APINQICFSPN-RYWMC 253
Query: 523 GSSDKTVRLWDVSSGECVRIFI----GHRSMI---LSLAMSPDGRYMASGDEDGTIMMWD 575
+++K +R++D+ + + + G + ++ +S+A S DG + SG D I +W
Sbjct: 254 AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWG 313
Query: 576 LA 577
++
Sbjct: 314 VS 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+++++ + D IR++ + L+ GH+ VW +++ G S S DRT R+W +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
+ + GH S V C + + N YI TGS D T+ +W + GE
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V + GH + + + +S G + SG D T+++WD+A +C+ L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
T +++ Y E S S D T+++WD+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 30/224 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
GH G V++ ++ G ++S S D T+R+W K ++GHN V D+
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPLR------------IMAGHLSDVDCVRW 513
Y + S D T +W + + PL ++ GH + V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
H N + +GS D T+ +WDV+ +C+ I GH I S + + S D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
WDL +G L GHT+ V L S L S +AD +++ WD
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 117/290 (40%), Gaps = 54/290 (18%)
Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
F ++ H+G A G ++ G +D +++VWD+ K + +G N T D
Sbjct: 154 FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLD 210
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGH 462
I+ K +I++ S D T+ +W +++ + + H
Sbjct: 211 IVEYKNIK-----------------------YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 463 NYPVWDVQFNPQ----------------------GHYFASSSHDRTARIWSMDRIQPLRI 500
+YP+ V P+ G+ S S+D T +W + + + L I
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
++GH + + + S D T+R+WD+ +GE GH +++ L +S +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--K 363
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610
++ S DG+I WD A+ HT+ + ++L SGS +
Sbjct: 364 FLVSAAADGSIRGWD-ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 412
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
GH + +++ D Y+ +G +D I ++D + + + L GH VW L Y+ G +L
Sbjct: 119 GHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 34/184 (18%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
++S G++V G D++L VWD+A+ + +
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQ----------------------------XKCLYIL 306
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH+ +YS + +S+S DTTIR+W + +GH V ++ + + +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--F 364
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSS 536
S++ D + R W + R + H +++ + ++++ N + +GS ++ ++++ S
Sbjct: 365 LVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRS 421
Query: 537 GECV 540
G+ V
Sbjct: 422 GKLV 425
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + +LS+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
G C GH S + + + G+ A+GS D T +L+D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 5/202 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595
+ + H ++I S++ S GR + +G +D +WD L GH + V L
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 596 AYSCEGSLLASGSADCTVKLWD 617
+ +G +A+GS D +K+W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + +LS+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
G C GH S + + + G+ A+GS D T +L+D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 5/202 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595
+ + H ++I S++ S GR + +G +D +WD L GH + V L
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 596 AYSCEGSLLASGSADCTVKLWD 617
+ +G +A+GS D +K+W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 48 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
G C GH S + + + G+ A+GS D T +L+D+ +++
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 5/202 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 152 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 210
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595
+ + H ++I S++ S GR + +G +D +WD L GH + V L
Sbjct: 271 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 329
Query: 596 AYSCEGSLLASGSADCTVKLWD 617
+ +G +A+GS D +K+W+
Sbjct: 330 GVTDDGMAVATGSWDSFLKIWN 351
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 234
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 235 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 293
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
G C GH S + + + G+ A+GS D T +L+D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 7/203 (3%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH+G + F L D I++SS DTT LW + + GH V + P
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
F S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 538 ECVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
+ + + H ++I S++ S GR + +G +D +WD L GH + V
Sbjct: 259 QELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 595 LAYSCEGSLLASGSADCTVKLWD 617
L + +G +A+GS D +K+W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
G C GH S + + + G+ A+GS D T +L+D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 5/202 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595
+ + H ++I S++ S GR + +G +D +WD L GH + V L
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 596 AYSCEGSLLASGSADCTVKLWD 617
+ +G +A+GS D +K+W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+ VY A FS G I S AD T++++ + L+ K H V F+ Y A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSG 537
+ S D+ +IW + + H V+C + N++ ATGS+D ++LWD++
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
EC GH + + SPD +AS DGT+ +WD+ S
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
N + + + H V+ F+ G AS D+T +++ + + L + H +V C
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
+ + +YIAT S+DK V++WD ++G+ V + H + + + +A+G D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+ +WDL C + GHT+ V +S + LLAS SAD T++LWDV ++ +
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 13/271 (4%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D +++VW+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNS-AIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +++ D I++ N GH V
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
+QF G SSS D ++W+ + + H V R + + + + S D T
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGT 1073
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V++W+V +G R F H+ +LS A+S D +S D T +W + L GH
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
CV A+S +G LLA+G + +++W+V+
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 354 LNCASISQDGSLVAGGFSDSSLKVWDM-------AKLGQQAVSSGLQ----GENDTTPRE 402
++C +S VA G D ++K+ ++ + +G + +Q G+ + E
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 403 DIIGP--NGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWST---KLNANL 456
D + N + Y Q H V F L D +LS S D T+++W+ ++ +
Sbjct: 1031 DSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
C++G V + F+S+S D+TA+IWS D + PL + GH V C + ++
Sbjct: 1089 TCHQG---TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 517 CNYIATGSSDKTVRLWDVSSGE----CVRIFI-----GHRSMILSLAMSPDGRYMASGDE 567
+ATG + +R+W+VS G+ C I + H + + SPD + + S
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-- 1203
Query: 568 DGTIMMWDLASG 579
G + W++A+G
Sbjct: 1204 GGYLKWWNVATG 1215
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
T N +N S D L+A +D +L++WD+ + ++++ + P ED
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 404 ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
I+ + + ++ GH + FSP +
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
+ + + LW+ + +GH V V F+P G F ++S D+T R+W ++
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
+ ++D V +A + +R + +G+ +I + + +SP
Sbjct: 925 SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 979
Query: 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
Y+A GDEDG I + +L + R + +GH V + ++ +G L S S D +++W+
Sbjct: 980 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Query: 619 TTSTKVLKTEEKSGTNRLRSLK 640
T V + R L+
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQ 1061
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
PN R S + GH V F+ G ++SSS D+ I++W+ + + V + H V
Sbjct: 998 PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1054
Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
D + Q S S D T ++W++ + R H V + ++ S+D
Sbjct: 1055 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1113
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
KT ++W + GH + A S DG +A+GD++G I +W+++ G+ +
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1173
Query: 584 PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
P+ H V + +S + L S +K W+V T +T +GTN L+
Sbjct: 1174 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1229
Query: 638 SLKTLPTKSTPV 649
+ P T V
Sbjct: 1230 KIHVSPDFRTYV 1241
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 45/284 (15%)
Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
A SQDG +A +D +L+V+ A+ G++ + DI
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFK-AETGEKLL--------------DI------------ 660
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H V +FS +I + SAD +++W + + Y H+ V F + +
Sbjct: 661 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 477 Y--FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
+ A+ S+D ++W +++ + M GH + V+ R+ + +A+ S+D T+RLWDV
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 535 SSGECVRIFIGHRSMILSLAMSPDG--------RYMASGDE-----DGTIMMWDL-ASGR 580
S R I + LS P+ + A GD+ ++++D+ SG
Sbjct: 780 RSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 838
Query: 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
GH S + +S L + V+LW++ + KV
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 882
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
H + S DG+ +AS D T+ ++ +G + + H V A+S + S +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
+ SAD VK+WD T V +E S
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHS 706
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 9/207 (4%)
Query: 376 KVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434
+V+ AKL +Q V +G+ E I N S + + H+ VY A FS G
Sbjct: 581 EVYQQAKLQAKQEVDNGM------LYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQ 634
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
I S AD T++++ + L+ K H V F+ + A+ S D+ +IW+
Sbjct: 635 RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSGECVRIFIGHRSMILS 552
+ + H V+C + + +++ ATGSSD ++LWD++ EC GH + +
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNH 754
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASG 579
SPD + +AS DGT+ +WD S
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
N + + + H V+ F+ G AS D+T +++ + + L + H +V C
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM--ASGDEDGT 570
+ + +IAT S DK V++W+ +GE V + H + + ++ A+G D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+ +WDL C + GHT+ V +S + LLAS SAD T+KLWD T++ +
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 17/273 (6%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D ++++W+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNS-AVMLKQEVDVVFQENEVMVLAVDHIRRLQL 954
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +I + I + N H VW
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWH 1014
Query: 469 VQFNPQGHYFASSSHDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
+QF SSS D ++W+ +D+ LR GH V R N + + + S D
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRLLKN-SRLLSWSFD 1070
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
TV++W++ +G + F+ H+ +LS +S D +S D T +W + L
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
GH CV A+S + +LLA+G + +++W+V+
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 34/300 (11%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPREDI 404
T N +N S D L+A +D +LK+WD + ++++ N P+ED+
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 405 ---------------IGPNGRKRSYT-----------LYQGHSGPVYSASFSPLGDFILS 438
I + + + ++ GH + FSP +
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QP 497
+ + + LW+T + + +GH V V F+P G F +SS D+T R+W ++ +
Sbjct: 864 ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKN 923
Query: 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557
+M +VD V N + + D RL + +G +I + + +SP
Sbjct: 924 SAVMLKQ--EVDVV---FQENEVMVLAVDHIRRL-QLINGRTGQIDYLTEAQVSCCCLSP 977
Query: 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
+Y+A GDE+G I + +L + R H VW + ++ + L S S D +++W+
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 436 ILSSSADTTIRLWST---KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
+LS S D T+++W+ + VC++G V + F+S+S D+TA+IWS
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQG---TVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--------I 544
D + PL + GH V C + ++ +ATG + +R+W+VS+GE + +
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
H + L SPDG+ + S G I W++ +G
Sbjct: 1181 THGGWVTDLCFSPDGKMLISA--GGYIKWWNVVTG 1213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 117/324 (36%), Gaps = 85/324 (26%)
Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
A S+DG +A +D +L+V+ A+ G++ +
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFK-AETGEKLLE--------------------------- 658
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H V +FS FI + S D +++W++ + Y H+ V F H
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 477 YF--ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
+ A+ S D ++W +++ + M GH + V+ R+ + +A+ S+D T++LWD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 535 SSG--------------------------ECV---------------RIFI--------- 544
+S +C +IF+
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL 838
Query: 545 -----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
GH S I SP + +W+ S V GH S V + +S
Sbjct: 839 GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP 898
Query: 600 EGSLLASGSADCTVKLWDVTTSTK 623
+GS + S D T++LW+ K
Sbjct: 899 DGSSFLTSSDDQTIRLWETKKVCK 922
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H G V S S S+SAD T ++WS L L +GHN V F+
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR---WHINCNYIATG----SSDKTV 529
A+ + RIW++ + L + A LS+ W + + G S+ +
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAP-LSEEGAATHGGWVTDLCFSPDGKMLISAGGYI 1205
Query: 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
+ W+V +GE + F + + + + +SPD + + D G + +
Sbjct: 1206 KWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYI 1249
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
H + S DG+ +AS D T+ ++ +G + + H V A+S + +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
+ S D VK+W+ T V +E S
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHS 705
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
HNG + C++ S D +L+A G + +++W+++ + + L E T
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT---------- 1181
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
H G V FSP G ++S+ I+ W+
Sbjct: 1182 ----------HGGWVTDLCFSPDGKMLISAGG--YIKWWNV 1210
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+ VY A FS G I S AD T++++ + L+ K H V F+ Y A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSG 537
+ S D+ +IW + + H V+C + N++ ATGS+D ++LWD++
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
EC GH + + SPD +AS DGT+ +WD+ S
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
N + + + H V+ F+ G AS D+T +++ + + L + H +V C
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
+ + +YIAT S+DK V++WD ++G+ V + H + + + +A+G D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+ +WDL C + GHT+ V +S + LLAS SAD T++LWDV ++ +
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 13/271 (4%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D +++VW+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNS-AIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +++ D I++ N GH V
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
+QF G SSS D ++W+ + + H V R + + + + S D T
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGT 1066
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V++W+V +G R F H+ +LS A+S D +S D T +W + L GH
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
CV A+S +G LLA+G + +++W+V+
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 354 LNCASISQDGSLVAGGFSDSSLKVWDM-------AKLGQQAVSSGLQ----GENDTTPRE 402
++C +S VA G D ++K+ ++ + +G + +Q G+ + E
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 403 DIIGP--NGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWST---KLNANL 456
D + N + Y Q H V F L D +LS S D T+++W+ ++ +
Sbjct: 1024 DSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
C++G V + F+S+S D+TA+IWS D + PL + GH V C + ++
Sbjct: 1082 TCHQG---TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 517 CNYIATGSSDKTVRLWDVSSGE----CVRIFI-----GHRSMILSLAMSPDGRYMASGDE 567
+ATG + +R+W+VS G+ C I + H + + SPD + + S
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-- 1196
Query: 568 DGTIMMWDLASG 579
G + W++A+G
Sbjct: 1197 GGYLKWWNVATG 1208
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
T N +N S D L+A +D +L++WD+ + ++++ + P ED
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 404 ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
I+ + + ++ GH + FSP +
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
+ + + LW+ + +GH V V F+P G F ++S D+T R+W ++
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
+ ++D V +A + +R + +G+ +I + + +SP
Sbjct: 918 SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
Y+A GDEDG I + +L + R + +GH V + ++ +G L S S D +++W+
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 619 TTSTKVLKTEEKSGTNRLRSLK 640
T V + R L+
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQ 1054
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
PN R S + GH V F+ G ++SSS D+ I++W+ + + V + H V
Sbjct: 991 PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1047
Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
D + Q S S D T ++W++ + R H V + ++ S+D
Sbjct: 1048 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
KT ++W + GH + A S DG +A+GD++G I +W+++ G+ +
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166
Query: 584 PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
P+ H V + +S + L S +K W+V T +T +GTN L+
Sbjct: 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1222
Query: 638 SLKTLPTKSTPV 649
+ P T V
Sbjct: 1223 KIHVSPDFRTYV 1234
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 45/284 (15%)
Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
A SQDG +A +D +L+V+ A+ G++ + DI
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFK-AETGEKLL--------------DI------------ 653
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H V +FS +I + SAD +++W + + Y H+ V F + +
Sbjct: 654 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 477 Y--FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
+ A+ S+D ++W +++ + M GH + V+ R+ + +A+ S+D T+RLWDV
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 535 SSGECVRIFIGHRSMILSLAMSPDG--------RYMASGDE-----DGTIMMWDL-ASGR 580
S R I + LS P+ + A GD+ ++++D+ SG
Sbjct: 773 RSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831
Query: 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
GH S + +S L + V+LW++ + KV
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
H + S DG+ +AS D T+ ++ +G + + H V A+S + S +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
+ SAD VK+WD T V +E S
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHS 699
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
QGHSG VYS ++P ++I+S+S D + +W+ + K H V + F P G
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 478 FASSSHDRTARIWSM------DRIQPL-RIMAGHLSDVDCVRWHINCNYIA-------TG 523
A D I+++ D P+ R++ GH + +C Y+ TG
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------YASSCQYVPDQETRLITG 176
Query: 524 SSDKTVRLWDVSSGECVRIF-----IGHRSMILSLAM-SPDGRYMASGDEDGTIMMWDL- 576
S D+T LWDV++G+ + IF GH + +LSL++ S + SG D T+ +WDL
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ R V GH + ++ + +G +GS D T +L+D+ T
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 27/230 (11%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFN 472
GH G S + P + +++ S D T LW + + GH V + N
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 473 P-QGHYFASSSHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
+ F S S D T R+W + RI + +R GH D++ V++ + TGS D T
Sbjct: 215 SLNANMFISGSCDTTVRLWDL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 530 RLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
RL+D+ +G ++++ ++ S+A S GR + +G +G +WD V
Sbjct: 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Query: 583 TPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
L G SC L S +GS L +GS D +K+W + K++
Sbjct: 334 LNLGTLQNSHEGRISC---LGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
S + RTA ++ + R + GH V + W N+I + S D + +W+ + +
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHT 589
H ++ A +P+G+ +A G D +++L+S R +T G+
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 590 SCVWTLAYSC-----EGSLLASGSADCTVKLWDVTTSTKV 624
S SC + + L +GS D T LWDVTT ++
Sbjct: 161 S-------SCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 392 LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451
+ G DTT R + R+ Y GH G + S F P G + S D T RL+ +
Sbjct: 222 ISGSCDTTVR--LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 452 LNANLVCY------KGHNYP-VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----RI 500
L Y + P V V F+ G + + +W + + +
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550
H + C+ + + + TGS DK +++W F GHR ++
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW---------AFSGHRKIV 380
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 346 TFINTHNG-LNCASISQDGSLVAGGFSDSSLKVW 378
T N+H G ++C +S DGS + G D +LK+W
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
+GH+G V + +P D ILS+S D TI +W KL + Y +GH++ V DV
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
+ G + S S D T R+W + R GH DV V + + I +GS DKT+
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
+LW+ + G C H + + SP+ + S D + +W+LA+ + T
Sbjct: 153 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
+GHT + T+ S +GSL ASG D LWD+
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GHS V S G F LS S D T+RLW + GH V V F+
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
S S D+T ++W+ + + H V CVR+ N + I + DK V++W++
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-------------- 580
++ + IGH + ++ +SPDG ASG +DG M+WDL G+
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 581 CVTP-------LMGHTSCVW----------------------------TLAYSCEGSLLA 605
C +P G + +W +LA+S +G L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 606 SGSADCTVKLWDVTTSTK 623
+G D V++W VT T+
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
+ I + S DKT+ +W ++ E R GH + + +S DG++ SG DGT+
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
+WDL +G +GHT V ++A+S + + SGS D T+KLW+ K +++S
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 170
Query: 633 TNRLRSLKTLPTKSTPV 649
+ + ++ P S P+
Sbjct: 171 SEWVSCVRFSPNSSNPI 187
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDM 380
H G LN ++S DGSL A G D +WD+
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
+GH+G V + +P D ILS+S D TI +W KL + Y +GH++ V DV
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
+ G + S S D T R+W + R GH DV V + + I +GS DKT+
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
+LW+ + G C H + + SP+ + S D + +W+LA+ + T
Sbjct: 130 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
+GHT + T+ S +GSL ASG D LWD+
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GHS V S G F LS S D T+RLW + GH V V F+
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
S S D+T ++W+ + + H V CVR+ N + I + DK V++W++
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-------------- 580
++ + IGH + ++ +SPDG ASG +DG M+WDL G+
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 581 CVTP-------LMGHTSCVW----------------------------TLAYSCEGSLLA 605
C +P G + +W +LA+S +G L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 606 SGSADCTVKLWDVTTSTK 623
+G D V++W VT T+
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
+ I + S DKT+ +W ++ E R GH + + +S DG++ SG DGT+
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
+WDL +G +GHT V ++A+S + + SGS D T+KLW+ K +++S
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 147
Query: 633 TNRLRSLKTLPTKSTPV 649
+ + ++ P S P+
Sbjct: 148 SEWVSCVRFSPNSSNPI 164
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDM 380
H G LN ++S DGSL A G D +WD+
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain
Length = 148
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 62 DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFR 121
+ P Y YS L++W SSL++YK EL +++YP+FI+ F++LVAK + AR FF+ F
Sbjct: 5 NAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFS 63
Query: 122 EDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS-- 179
D + H ++ +L V S H++E E A + + K I + + + LLL +L++ +S
Sbjct: 64 PDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIG 123
Query: 180 -TKMLGIINERIN 191
+ ++ +IN+ ++
Sbjct: 124 GSLIISVINQHLD 136
>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|B Chain B, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|C Chain C, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|D Chain D, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|E Chain E, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|F Chain F, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|G Chain G, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|H Chain H, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
Length = 156
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 42 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
+ + + P++S +++ D P Y++ YS L+ + SLD ++ EL + YP+F+H +
Sbjct: 3 VAVEDQPDVSAVLSAYNQQGD-PTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXY 61
Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
++LV H EA++FF F D E + DL+ L + H + E R SK ++
Sbjct: 62 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLR 121
Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERI 190
I + SY+LL ++L + Q+ ++ I+ E +
Sbjct: 122 ISRDSYQLLKRHLQEKQNNQIWNIVQEHL 150
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
PV + F ++I+ S D IR+++ +V ++ H + + +P Y S S
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS-SGEC 539
D T ++W+ + L + GH V CV ++ + + A+G D+TV++W + S
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ G + + PD YM + +D TI +WD + CV L GH S V +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
++ SGS D T+K+W+ +T KV KT G R + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
PV + F ++I+ S D IR+++ +V ++ H + + +P Y S S
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
D T ++W+ + L + GH V CV ++ + + A+G D+TV++W + S
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ G + + PD YM + +D TI +WD + CV L GH S V +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
++ SGS D T+K+W+ +T KV KT G R + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
GH+ V +++ P G + AS +D +W + PL+ H V V W
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
N +ATG +SD+ +R+W+V SG C+ H S + S+ SP + + SG +
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
++W + V L GHTS V +L S +G+ +AS +AD T++LW
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
+ V W NY+A G+S V+LWDV + +R H + + SL+ + ++SG
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 218
Query: 568 DGTIMMWDL-ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
G I D+ + V L GH+ V L ++ +G LASG D V +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
+ H++ V +L+++ +L+SGS + DV + + T
Sbjct: 195 NMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVAT 236
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499
A + +W A + KGH V + +P G AS++ D T R+W + P R
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
GH+ V +++ P G + AS +D +W + PL+ H V V W
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
N +ATG +SD+ +R+W+V SG C+ H S + S+ SP + + SG +
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
++W + V L GHTS V +L S +G+ +AS +AD T++LW
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
+ V W NY+A G+S V+LWDV + +R H + + SL+ + ++SG
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 207
Query: 568 DGTIMMWDL-ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
G I D+ + V L GH+ V L ++ +G LASG D V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
+ H++ V +L+++ +L+SGS + DV + + T
Sbjct: 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT 225
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499
A + +W A + KGH V + +P G AS++ D T R+W + P R
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
PV + F ++I+ S D IR+++ +V ++ H + + +P Y S S
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
D T ++W+ + L + GH V CV ++ + + A+G D+TV++W + S
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ G + + PD YM + +D TI +WD + CV L GH S V +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
++ SGS D T+K+W+ +T KV KT G R + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
PV + F ++I+ S D IR+++ +V ++ H + + +P Y S S
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
D T ++W+ + L + GH V CV ++ + + A+G D+TV++W + S
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ G + + PD YM + +D TI +WD + CV L GH S V +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
++ SGS D T+K+W+ +T KV KT G R + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GH V S S SSS D IRLW + + W + F+P Y
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
A+ +H I+ ++ + + + + + + Y+A+G+ D + ++D+++G
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ + GH I SL SPD + + + +DG I ++D+ L GH S V +A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKV 624
+ + S S+D +VK+WDV T T V
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 2/199 (1%)
Query: 421 SGPV--YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
+GPV ++ +FSP ++ + + + ++ + + + ++P G Y
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
AS + D I+ + + L + GH + + + + + T S D ++++DV
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS 598
GH S +L++A PD + S D ++ +WD+ + CV H VW + Y+
Sbjct: 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Query: 599 CEGSLLASGSADCTVKLWD 617
GS + S D + ++D
Sbjct: 300 GNGSKIVSVGDDQEIHIYD 318
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 460 KGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+ H+ +W V + + S D ++W +R+ + GH V V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
A+ S D +RLWD+ +G+ ++ +LA SPD +Y+A+G G + +
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
+ + SG+ L + ++AYS +G LASG+ D + ++D+ T
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------------ 196
Query: 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ L TL + P+ SL FS + L +
Sbjct: 197 ---KLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 30/273 (10%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVW 467
+S LY+ ++S FS + + S D I+L S K + +++ H +
Sbjct: 8 KSLKLYKE---KIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 468 DVQFNPQGHYFASSSHDRTARIW----SMDR---IQPLRIMAGHLSDVDCVRWHINCNYI 520
V + P A+ S D T IW S DR + L I+ GH ++V V W + Y+
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 521 ATGSSDKTVRLWDVS-SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
AT S DK+V +W+ SG EC+ + H + + P +AS D T+ +W
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 577 ASG--RCVTPLMGHTSCVWTLAYS-CEGSL-LASGSADCTVKLWDVTTSTKVLKTEEKSG 632
CV L GH VW+ + EG L SGS D TV++W K + +E
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW------KYMGDDEDDQ 236
Query: 633 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
+ VY++ + L+ + GA
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 53/280 (18%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
SL+A G DS++ +W AK + D T D++ + +GH
Sbjct: 71 SLLAAGSFDSTVSIW--AK----------EESADRTFEMDLLA---------IIEGHENE 109
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFA 479
V ++S G ++ + S D ++ +W T + + + H+ V V ++P A
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 480 SSSHDRTARIWS--MDRIQPLRIMAGH-----LSDVDCVRWHINCNYIATGSSDKTVRLW 532
SSS+D T RIW D + + ++ GH SD D + +GS D TVR+W
Sbjct: 170 SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE---GVFRLCSGSDDSTVRVW 226
Query: 533 --------DVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMM-------WDL 576
D C I H+ + ++A +G +AS DG + + W +
Sbjct: 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV 285
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
+ R + + + V L + + ++LA+G D V W
Sbjct: 286 FAKRALCHGVYEINVVKWLELNGK-TILATGGDDGIVNFW 324
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQF 471
++ Q HS V + P + SSS D T+R+W + + C GH VW F
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDF 205
Query: 472 NPQGHYF--ASSSHDRTARIWSM-----DRIQPLRIMA----GHLSDVDCVRWHINCNYI 520
+ F S S D T R+W D Q A H V V W N I
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLI 264
Query: 521 ATGSSDKTVRLWDVSSGECVRIFI------GHRSMILSLAMSPDGR-YMASGDEDGTIMM 573
A+ +D + +++ GE ++F G + + + +G+ +A+G +DG +
Sbjct: 265 ASVGADGVLAVYEEVDGEW-KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 574 WDL 576
W L
Sbjct: 324 WSL 326
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
GH+ V +++ P G + AS +D +W + PL+ H V V W
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
N +ATG +SD+ +R+W+V SG C+ H S + S+ SP + + SG +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
++W + V L GHTS V +L S +G+ +AS +AD T++LW
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
+ V W NY+A G+S V+LWDV + +R H + + SL S + ++SG
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGSR 127
Query: 568 DGTIMMWDL-ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
G I D+ + V L GH+ V L ++ +G LASG D V +W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 584 PLMGHTSCVWTLAYSCEGSLLASGS 608
+ H++ V +L+++ +L+SGS
Sbjct: 104 NMTSHSARVGSLSWN--SYILSSGS 126
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497
A + +W A + KGH V + +P G AS++ D T R+W + P
Sbjct: 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGH 462
+ +G YTL GH G V S SF ++S S D T ++W L NL + H
Sbjct: 88 LFATSGEDPLYTLI-GHQGNVCSLSFQD--GVVISGSWDKTAKVWKEGSLVYNL---QAH 141
Query: 463 NYPVWD---VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
N VWD V F+ + F ++S D+T ++W D++ ++ +G +DV ++ +
Sbjct: 142 NASVWDAKVVSFSE--NKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH 197
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+ S+D ++L D +G+ +R + GH S + + + P+G ++ G ED T+ +W +G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256
Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
+ +W++ G ++ GS+D V++
Sbjct: 257 SLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRI 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 53/227 (23%)
Query: 436 ILSSSADTTIRLWSTKLN------------ANLVCYK----------------------- 460
+ S S D T+RLWS N VCY
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 461 ----------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
GH V + F Q S S D+TA++W + + A + S D
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSL-VYNLQAHNASVWDA 148
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDG 569
+ N T S+DKT++LW + + ++ F G H ++ LA+ DG +++ + DG
Sbjct: 149 KVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DG 205
Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
I + D +G + GH S V+ + G +++ G D TV++W
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIW 251
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+ V + S F +SSS D T+RLW + + GH V+ V F+P
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRW----------HINCNYIATGS 524
S+ +R ++W++ + + + H V CVR+ Y A+
Sbjct: 134 LSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
D +++W+ ++ + F H S + L++SP+G+Y+A+G +D +++WD+ +
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK----------VLKTEEKSGTN 634
S + +A++ + +A G+ D VK++++ T +K + K E + G N
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW----- 467
+Y + GH VYS +FSP ILS+ A+ I+LW+ + N+ W
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169
Query: 468 -------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
+ P YFAS D ++W+ + Q H S+V+ + N YI
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYI 228
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-- 578
ATG DK + +WD+ + + S I +A +P +++A G + G + +++L +
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQS 287
Query: 579 --------GRCVTPLMGHTS----CVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621
+T G C +LA++ G L +G D ++ + TS
Sbjct: 288 KAPVCTIEAEPITKAEGQKGKNPQCT-SLAWNALGKKLFAGFTDGVIRTFSFETS 341
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 480 SSSHDRTARIWSMDRIQ-------PLRIMAGHLSDV-DCVRWHINCNYIATGSSDKTVRL 531
S S D+T IW + + P + + GH V D NC I++ S DKT+RL
Sbjct: 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRL 102
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
WD+ +G + F+GH+S + S+A SPD R + S + I +W++ G C
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GEC 151
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIM 572
+ +GS DKTV +W + E F GH + LA+S + + S D T+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
+WDL +G +GH S V+++A+S + + S A+ +KLW++ K E+++
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 633 TNRLRSLKTLP 643
++ + ++ P
Sbjct: 162 SDWVSCVRYSP 172
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKL 383
YTF + +N SIS +G +A G D L +WD+ L
Sbjct: 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 420 HSGPVYSASFSPL-GDFILSSSADTTIRLW-------STKLNANLVCYKG------HNYP 465
H G + + P+ G ++LS +D I L+ + VC G H Y
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 466 VWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVD---CVRWH 514
V VQ+ P F SSS D+T ++W + +Q + + H+S V C+
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL--- 158
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDGTIMM 573
+A G+ V+L D+ SG C I GHR IL+++ SP Y +A+ D + +
Sbjct: 159 -----VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 574 WDL--ASGRCVTPL---------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
WD+ ASG C+ L H V L ++ +G L + D ++LW
Sbjct: 214 WDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 617 DVTTSTKVLKTEEKSGTNRLRSLK 640
+ + L K N + LK
Sbjct: 273 NSSNGENTLVNYGKVCNNSKKGLK 296
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 40/211 (18%)
Query: 416 LYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNP 473
+ QGH + + S+SP D+IL++ SAD+ ++LW + + L+ HN
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK------KS 234
Query: 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
Q A+++H+ ++ L + L ++ T +D +RLW+
Sbjct: 235 QAVESANTAHN--------GKVNGLCFTSDGL-------------HLLTVGTDNRMRLWN 273
Query: 534 VSSGECVRIFIGHRS--------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
S+GE + G +S S + ++ G TI ++ + SG +T L
Sbjct: 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQITML 330
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
GH V + L SGS DC + W
Sbjct: 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-----LNANLVCYKG 461
P G +Y HS A SP G + S +R+W T L + + G
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104
Query: 462 HNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
PV D+ ++ + A+ +R ++ D + G ++ V + + +
Sbjct: 105 ---PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161
Query: 520 -IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I +GS D TV +++ + F H + S+ +PDG AS DGTI++++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 579 GRCVTPL-------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
G + H+ V+ L +S +G+ +AS SAD T+K+W+V T KV KT
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKT 276
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 11/212 (5%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
G + + S F P F I+S S D T+ ++ + H V V++NP G
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 204
Query: 478 FASSSHDRTARIWS-MDRIQ-------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
FAS+ D T +++ +D + L+ +A H V + W + IA+ S+DKT+
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTI 263
Query: 530 RLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
++W+V++ + + I +G R L + + + S +G I + G GH
Sbjct: 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
+ L+ S +G L S A+ + WD++T
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 21/220 (9%)
Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL----SDVDCVRWH 514
Y H++ + +P G+Y AS RIW D Q I+ + V + W
Sbjct: 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW--DTTQTTHILKTTIPVFSGPVKDISWD 112
Query: 515 INCNYIATGSSDKT----VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDG 569
IA + V L+D +G G + S+ P + + SG +D
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629
T+ +++ + + HT V ++ Y+ +GSL AS D T+ L++ T
Sbjct: 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT------- 223
Query: 630 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
K+G SLK + S V+ L +S A+ + KT
Sbjct: 224 KTGVFEDDSLKNV-AHSGSVFGLTWSPDGTKIASASADKT 262
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDED 568
CV + ++A G D V ++ +S + I H + I S+A S +G ++ + D+
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 569 GTIMMWDLASG---RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
++ + +A+ HT+ V +++S + LA+GS D +V +W++
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRY 561
H + V CV W + +ATGS D +V +W+++ S + I H ++ + +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 562 MASGDEDGTIMMWDL 576
+ S +D I W++
Sbjct: 595 IVSAGQDSNIKFWNV 609
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 227 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 346 LHVWDLS 352
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
+++ +A S +D +M+WD + P + HT+ V L+++
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 603 LLASGSADCTVKLWDV 618
+LA+GSAD TV LWD+
Sbjct: 292 ILATGSADKTVALWDL 307
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 335 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 380
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNA 454
+ S++P +I+ S S D +++W N
Sbjct: 381 ISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 228
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 229 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 348 LHVWDLS 354
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
+++ +A S +D +M+WD + P + HT+ V L+++
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 603 LLASGSADCTVKLWDV 618
+LA+GSAD TV LWD+
Sbjct: 294 ILATGSADKTVALWDL 309
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 337 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 382
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNA 454
+ S++P +I+ S S D +++W N
Sbjct: 383 ISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 414
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 230
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 231 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 350 LHVWDLS 356
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
+++ +A S +D +M+WD + P + HT+ V L+++
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 603 LLASGSADCTVKLWDV 618
+LA+GSAD TV LWD+
Sbjct: 296 ILATGSADKTVALWDL 311
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 339 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 384
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNA 454
+ S++P +I+ S S D +++W N
Sbjct: 385 ISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 416
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S++P L +LS+S D TI LW K+
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH V DV ++ F S + D+ IW S + +P + H ++V+C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 572 MMWDLA 577
+WDL+
Sbjct: 343 NVWDLS 348
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N K S+++ H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 261 NTSKPSHSV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 319
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ VQ++P ASS DR +W + +I + L I GH + +
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECV---RIFIGHRSMI-- 550
+ GH + + W+ N + ++ + S D T+ LWD+S+ G+ V IF GH +++
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLAS 606
+S + + + + D D +M+WD S P + HT+ V L+++ +LA+
Sbjct: 233 VSWHLLHESLFGSVAD-DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 607 GSADCTVKLWDV 618
GSAD TV LWD+
Sbjct: 292 GSADKTVALWDL 303
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G++ +P + GP ++ GH+
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEE-----------QSPEDAEDGP---PELLFIHGGHTAK 376
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+ S++P +++ S S D +++W N
Sbjct: 377 ISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S+ S L +LS+S D T+ LW K+
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH+ V DV ++ F S + D+ IW S +P ++ H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
+WDL+
Sbjct: 345 NVWDLS 350
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N + L H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ V ++P ASS DR +W + +I + L I GH + +
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 511 VRWHINCNY-IATGSSDKTVRLW 532
W+ N + I + S D ++W
Sbjct: 382 FSWNPNEPWVICSVSEDNIXQIW 404
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
+ GH + + W+ N + ++ + S D TV LWD+++G + IF GH +++
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
+A S +D + +WD S P + HT+ V L+++ +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
SAD TV LWD+ L T E S + + + P T + S RR
Sbjct: 295 SADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRR 343
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 284 DKAINATAKTSRL------EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA 337
D N T+K S L E N +S P + LA V L +L+ ++H +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
+ F + HN +++A +D L VWD++K+G++ + +
Sbjct: 318 HKDEI-FQVHWSPHNE----------TILASSGTDRRLNVWDLSKIGEEQSAEDAE---- 362
Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+G ++ GH+ + S++P +++ S S D ++W N
Sbjct: 363 ----------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S+ S L +LS+S D T+ LW K+
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH+ V DV ++ F S + D+ IW S +P ++ H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
+WDL+
Sbjct: 345 NVWDLS 350
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N + L H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ V ++P ASS DR +W + +I + L I GH + +
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 382 FSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
+ GH + + W+ N + ++ + S D TV LWD+++G + IF GH +++
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
+A S +D +M+WD S P + HT+ V L+++ +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
SAD TV LWD+ L T E S + + + P T + S RR
Sbjct: 295 SADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRR 343
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 284 DKAINATAKTSRL------EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA 337
D N T+K S L E N +S P + LA V L +L+ ++H +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
+ F + HN +++A +D L VWD++K+G++ + +
Sbjct: 318 HKDEI-FQVHWSPHNE----------TILASSGTDRRLNVWDLSKIGEEQSAEDAE---- 362
Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+G ++ GH+ + S++P +++ S S D +++W N
Sbjct: 363 ----------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----DVDCVRWHI 515
GH P+ V++N +G S S D +A +W + L + GH DVDC
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF---- 85
Query: 516 NCNYIATGSSDKTVRLWDVSSGECV 540
Y TGS+D +++LWDVS+G+CV
Sbjct: 86 -TKYCVTGSADYSIKLWDVSNGQCV 109
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G ++S + ++ SAD +I+LW N V PV V+F+P G+YF
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 479 AS-----SSHDRTARIWSMDRI-----------QPLRIMAGH--LSDVDCVRWHINCNYI 520
+ + + I+ ++R +P+ + H L W YI
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 521 ATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
G D + +DVS+ E V H I + SPD Y + D + D+++
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
GH + + + +G + S +D + +W +G + L GHT +W++ C
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 605 ASGSADCTVKLWDVT 619
+GSAD ++KLWDV+
Sbjct: 90 VTGSADYSIKLWDVS 104
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+ GH + V+++ + + + S D + +W +GE + GH I S+ + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 561 YMASGDEDGTIMMWDLASGRCV 582
Y +G D +I +WD+++G+CV
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCV 109
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 30/169 (17%)
Query: 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDR 485
A +S G +I++ D I + N V H + D+QF+P YF +SS D
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI---------ATGSSDKTVRLWDVSS 536
+ + + +Q L+ + DC +N I G K V +
Sbjct: 241 NSFLVDVSTLQVLKKY-----ETDCP---LNTAVITPLKEFIILGGGQEAKDVTTTSANE 292
Query: 537 GECVRIFI------------GHRSMILSLAMSPDGRYMASGDEDGTIMM 573
G+ F GH + ++A+SP G ASG EDG I +
Sbjct: 293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
V+++ G + + + I+ ++ LR MAGH + V C+ W N + +++GS
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 529 VRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
+ DV + + GH S + LA DG +ASG D + +WD S
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 588 HTSCVWTLAY-SCEGSLLASGSA--DCTVKLWDVTTSTKVLKTEEKSGTNRL 636
H + V +A+ + +LLA+G D + W+ T +V + S L
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
V V+W + ++++ G + V ++DV S +R GH++ + L+ + ++SG
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 568 DGTIMMWDL-ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST-KVL 625
G I D+ + + L GH+S V LA+ +G LASG D V++WD +S K
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 626 KTEEKSG 632
KT +
Sbjct: 255 KTNHNAA 261
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGH 476
QGHS V ++ G + S D +++W + + HN V V + P Q +
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 477 YFASS--SHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCNYIAT--GSSDKTVRL 531
A+ + D+ W+ + + AG S V + W + I + G D + +
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 532 WDVSS-GECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
W SS G ++ I H + +L A+SPDGR +++ D + W + G V
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H + F P G+ ++SSS D +++WS K +N GH V D+ +G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
S+S D T R+W D + + + G S + + +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
Y+ G + + +V S E I + + +++ DG Y+ +G E+G
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
+ WDL S C V + + Y G+L S D ++KL
Sbjct: 312 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 357
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
I H+S++ +++ + + + S D +++W V G R IGHR+ + +A+ G
Sbjct: 131 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 560 RYMASGDEDGTIMMWDLASGRCV 582
R + S DGTI +W+ +G +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTI 213
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
G+++ +++ D + I H S I L P G + S +D + +W + G
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
L+GH + V +A G + S S D T++LW+ T T +
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
FIL ++ + I++ + N + H + ++F P G SSS D +IWS+
Sbjct: 109 FILGTT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
R + GH + V + + + S D T+RLW+ +G + F
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H + F P G+ ++SSS D +++WS K +N GH V D+ +G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
S+S D T R+W D + + + G S + + +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
Y+ G + + +V S E I + + +++ DG Y+ +G E+G
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
+ WDL S C V + + Y G+L S D ++KL
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
I H+S++ +++ + + + S D +++W V G R IGHR+ + +A+ G
Sbjct: 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 560 RYMASGDEDGTIMMWDLASGRCV 582
R + S DGTI +W+ +G +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTI 216
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
G+++ +++ D + I H S I L P G + S +D + +W + G
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
L+GH + V +A G + S S D T++LW+ T T +
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
FIL ++ + I++ + N + H + ++F P G SSS D +IWS+
Sbjct: 112 FILGTT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
R + GH + V + + + S D T+RLW+ +G + F
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD 533
G F +T R+ D+ PL + GH + V + W N N IA+GS D TV +W+
Sbjct: 56 GGAFLVLPLGKTGRV---DKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE 110
Query: 534 VSSG-------ECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPL 585
+ G E V GH + +A P + + S D I++WD+ +G V L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Query: 586 MG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
H ++++ +S +G+L+ + D V++ + T V
Sbjct: 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
V + GH + +L +A P + +ASG ED T+M+W++ G V PL GHT
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
V +A+ + + LL++G D + +WDV T VL
Sbjct: 134 VGIVAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVL 168
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 51/238 (21%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGH 462
+G GR ++ L GH+ PV ++ P D +++S S D T+ +W + LV
Sbjct: 64 LGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLV----- 117
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIA 521
+ +P+ + GH V V WH N +
Sbjct: 118 -----------------------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 522 TGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D + +WDV +G V + +G H I S+ S DG + + D + + +
Sbjct: 149 SAGXDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Query: 579 GRCVT----PLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEE 629
G V P G + EG +L +G + + V LWD + L +E
Sbjct: 208 GTVVAEKDRPHEGTRPV--HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 583 TPLM-GHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640
PL+ GHT+ V +A+ +++ASGS DCTV +W++ VL E T
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH--- 130
Query: 641 TLPTKSTPVYSLQFSRRNLLFAAG 664
TK + + + +N+L +AG
Sbjct: 131 ---TKRVGIVAWHPTAQNVLLSAG 151
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
V + GH + +L +A P + +ASG ED T+M+W++ G V PL GHT
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
V +A+ + + LL++G D + +WDV T VL
Sbjct: 134 VGIVAWHPTAQNVLLSAG-CDNVILVWDVGTGAAVL 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD 533
G F +T R+ D+ PL + GH + V + W N N IA+GS D TV +W+
Sbjct: 56 GGAFLVLPLGKTGRV---DKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110
Query: 534 VSSG-------ECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPL 585
+ G E V GH + +A P + + S D I++WD+ +G V L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Query: 586 MG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
H ++++ +S +G+L+ + D V++ + T V
Sbjct: 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 51/238 (21%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGH 462
+G GR ++ L GH+ PV ++ P D +++S S D T+ +W + LV
Sbjct: 64 LGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLV----- 117
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIA 521
+ +P+ + GH V V WH N +
Sbjct: 118 -----------------------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 522 TGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D + +WDV +G V + +G H I S+ S DG + + D + + +
Sbjct: 149 SAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Query: 579 GRCVT----PLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEE 629
G V P G T V + S EG +L +G + + V LWD + L +E
Sbjct: 208 GTVVAEKDRPHEG-TRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 583 TPLM-GHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640
PL+ GHT+ V +A+ +++ASGS DCTV +W++ VL E T
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH--- 130
Query: 641 TLPTKSTPVYSLQFSRRNLLFAAGA 665
TK + + + +N+L +AG
Sbjct: 131 ---TKRVGIVAWHPTAQNVLLSAGC 152
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
C I G + T+ +WD+++ RI +LA+SPD + S DG I +
Sbjct: 110 CTLIVGGEA-STLSIWDLAA-PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
WDL + V GHT + S +G+ L +G D TV+ WD+ ++ ++ T
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL---QQHDFT 224
Query: 634 NRLRSLKTLPT 644
+++ SL PT
Sbjct: 225 SQIFSLGYCPT 235
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 108/289 (37%), Gaps = 31/289 (10%)
Query: 348 INT--HNGLNCA-SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
INT H + CA +IS V G +KVWD++ G ++ S L D R++
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQL----DCLNRDNY 99
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
I RS L + S L + L A T R+ + ++ CY
Sbjct: 100 I------RSCKLLPDGCTLIVGGEASTLSIWDL---AAPTPRIKAELTSSAPACYA---- 146
Query: 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
+ +P S D +W + +R GH C+ + + TG
Sbjct: 147 ----LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 525 SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
D TVR WD+ G R H S I SL P G ++A G E + + +
Sbjct: 203 LDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K 258
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631
L H SCV +L ++ G S D + W + +++E S
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 307
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 44/227 (19%)
Query: 291 AKTSRLEANTVSTAPR-----VKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFY 345
A T R++A S+AP + PD + + DL N+ +
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--------- 178
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
F +G +C IS DG+ + G D++++ WD+ + G+Q LQ ++D T + +
Sbjct: 179 -FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL-REGRQ-----LQ-QHDFTSQIFSL 230
Query: 406 G--PNG------------------RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTI 445
G P G + Y L+ H V S F+ G + +S+ D +
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
W T A++ K + V + Y + S D+ A ++ +
Sbjct: 290 NAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 436 ILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
IL +S + LW N L+ C H+ V V G S S D ++W
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 492 MDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHR 547
+ + L H + V CV H + +++ S D + LWD C + IG
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC-SEDNRILLWDT---RCPKPASQIGCS 211
Query: 548 S---MILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-S 602
+ + SLA P GDE+GT+ + D S CV H+ CV L +S
Sbjct: 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP 271
Query: 603 LLASGSADCTVKLWDVTTS 621
LAS S DC++ + D + S
Sbjct: 272 FLASLSEDCSLAVLDSSLS 290
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 73/221 (33%), Gaps = 71/221 (32%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S+ G+ G D +KVWD+A QQ V S Y
Sbjct: 134 SVLSSGTQAVSGSKDICIKVWDLA---QQVVLSS-------------------------Y 165
Query: 418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H+ V + SP D + LS S D I LW T+ C K P + + G+
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR------CPK----PASQIGCSAPGY 215
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVS 535
S + WH + + G + TV L D
Sbjct: 216 LPTS------------------------------LAWHPQQSEVFVFGDENGTVSLVDTK 245
Query: 536 SGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWD 575
S CV H + L SP ++AS ED ++ + D
Sbjct: 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 518 NYIATGSSDKTVRLWDVS-SGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
N++ GS VR W+V SG+ + + H +L + S DG + + D T MWD
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 576 LASGRCVTPLMGHTSCVWTL------AYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
L+S + + + H + V T+ YSC + +GS D T+K WD +S ++
Sbjct: 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC----VMTGSWDKTLKFWDTRSSNPMM 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 475 GHYFASSSHDRTARIWSM-DRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
G++ + S R W + D Q + + H V V W + + + T S DKT ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 533 DVSSGECVRIFIGHRSMILSL--AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
D+SS + ++I H + + ++ +P+ + +G D T+ WD R P+M
Sbjct: 114 DLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT---RSSNPMM 165
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H+GPV +S G + ++S D T ++W N + + H+ PV + + +Y
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNY 141
Query: 478 --FASSSHDRTARIWSMDRIQPLRIM 501
+ S D+T + W P+ ++
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 550 ILSLAMSPD---GRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYSCEGSLL 604
I L+ SP G ++ +G + W++ SG+ + HT V + +S +GS +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640
+ S D T K+WD++++ + + + + +K
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK 137
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
V C+ W + N I TG + +RLW+ +G + + HR+ I+S+ + DG ++ S D
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 568 DGTIMMWDLASGRCV 582
+ ++W++ SG +
Sbjct: 170 ENVTILWNVISGTVM 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 41/222 (18%)
Query: 404 IIGPNGRKRSYTLYQ--------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455
I GP G Y + + GH GP+ F+ +LS+S D T+R+W +
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------IQPLRIMAGHLSD 507
C+ GH+ + + S S D + R+WS+ + + + I AG +S
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILS-LAMSPDGRYMASG 565
+ A D V ++D+ R G+R IL+ L + Y +S
Sbjct: 341 --------DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392
Query: 566 DEDGTI-MMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLA 605
D D + W+ A + ++AYS EGS++A
Sbjct: 393 DNDYIFDLSWNCAGNKI------------SVAYSLQEGSVVA 422
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 131/364 (35%), Gaps = 86/364 (23%)
Query: 323 SILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK 382
+I+ +LR+ LS+++ T N + C + S DG+ + G + L++W
Sbjct: 89 TIIAELRHPFALSASSGK---------TTNQVTCLAWSHDGNSIVTGVENGELRLW---- 135
Query: 383 LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442
N + H P+ S ++ G I+S +
Sbjct: 136 -------------------------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 443 TTIRLWS-----------------TKLNANLVCYKGHNYPVWDVQF---------NPQGH 476
LW+ + +NA + G DV++ P+G
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAE--NHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
F ++T P + GH + + ++ + + S D T+R+W +
Sbjct: 229 IFVYQITEKT----------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278
Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
G F GH I+S + D + + S DG++ +W L + + ++
Sbjct: 279 GNSQNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337
Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-GTNRLRSLKTLPTKSTPVY-SLQF 654
S +G A D V ++D+ K L ++ +S NR L LP P+Y S Q
Sbjct: 338 ISQDGQKYAVAFMDGQVNVYDL----KKLNSKSRSLYGNRDGILNPLP---IPLYASYQS 390
Query: 655 SRRN 658
S+ N
Sbjct: 391 SQDN 394
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
GH GPV+ ++ G + S S D + +W + + + + H+ V VQ+ P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWH-------------IN 516
G +S D + P+ I+ H V+ W
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
TG +D V++W +S + GH + +A SP Y+AS +D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
T ++W D G L+ +W ++S G++LA D V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 568 DGTIMMWDLASGRCVTPL------MGHTSCVWTLAY---------SCEGSLLASGSADCT 612
DG + + + +P+ +G S W A + E +G AD
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 613 VKLWDVTT--STKVLKTEEKSGTNRLRSLKTLPT 644
VK+W + T VL++ + ++ +R + PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
K HN V V + P + + DR A +W++ +P ++ CVRW N
Sbjct: 49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
A GS + + + W V C I RS +LSL P+ +A+G D
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164
Query: 570 TIMMW-----DLASGRCVTP---------LM--GHTSCVWT--LAYSCEGSLLASGSADC 611
++ ++ TP LM +SC W + +S GS +A S D
Sbjct: 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
TV L D ++ ++ TL +++ P+ ++ F + L AAG
Sbjct: 225 TVCLAD---------------ADKKMAVATLASETLPLLAVTFITESSLVAAG 262
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
K HN V + + P + + DR A +W++ +P ++ CVRW N
Sbjct: 49 KEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
A GS + + + W V C I RS +LSL P+ +A+G D
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164
Query: 570 TIMMW-----DLASGRCVTP---------LM--GHTSCVWT--LAYSCEGSLLASGSADC 611
++ ++ TP LM +SC W + +S GS +A S D
Sbjct: 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
TV L D ++ ++ TL +++ P+ ++ F + L AAG
Sbjct: 225 TVCLAD---------------ADKKMAVATLASETLPLLAVTFITESSLVAAG 262
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 53 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 111
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+D + +W++ + V + GH V + Y G + S D ++KLW + +
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
+ +E N ++ + P S ++ FS R++
Sbjct: 232 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 265
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAG----------------------------- 503
G S D + ++W RI R+M
Sbjct: 207 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 263
Query: 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLW----------DVSSGECVRIFIGH----R 547
H + VDCVRW + I + S + + W + E +G +
Sbjct: 264 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 321
Query: 548 SMILSLAMSPD--GRYMASGDEDGTIMMWDLA-----SGRCVTPLMGHTSC---VWTLAY 597
I + S D + +A G++ G + +WDL +C T + H C + ++
Sbjct: 322 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT--LTHHKCGAAIRQTSF 379
Query: 598 SCEGSLLASGSADCTVKLWD 617
S + S+L + D ++ WD
Sbjct: 380 SRDSSILIAVCDDASIWRWD 399
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 12 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 70
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+D + +W++ + V + GH V + Y G + S D ++KLW + +
Sbjct: 131 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
+ +E N ++ + P S ++ FS R++
Sbjct: 191 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 224
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAG----------------------------- 503
G S D + ++W RI R+M
Sbjct: 166 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 222
Query: 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLW----------DVSSGECVRIFIGH----R 547
H + VDCVRW + I + S + + W + E +G +
Sbjct: 223 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 280
Query: 548 SMILSLAMSPD--GRYMASGDEDGTIMMWDLA-----SGRCVTPLMGHTSC---VWTLAY 597
I + S D + +A G++ G + +WDL +C T + H C + ++
Sbjct: 281 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT--LTHHKCGAAIRQTSF 338
Query: 598 SCEGSLLASGSADCTVKLWD 617
S + S+L + D ++ WD
Sbjct: 339 SRDSSILIAVCDDASIWRWD 358
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
GH GPV+ ++ G + S S D + +W + + + + H+ V VQ+ P
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHI-------------N 516
G +S D + P+ I+ H V+ W
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 171
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
TG +D V++W +S + GH + +A SP Y+AS +D
Sbjct: 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
T ++W D G L+ +W ++S G++LA D V LW
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 63
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 64 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 568 DGTIMMWDLASGRCVTPL------MGHTSCVWTLAY---------SCEGSLLASGSADCT 612
DG + + + +P+ +G S W A + E +G AD
Sbjct: 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 613 VKLWDVTT--STKVLKTEEKSGTNRLRSLKTLPT 644
VK+W + T VL++ + ++ +R + PT
Sbjct: 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 74
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+D + +W++ + V + GH V + Y G + S D ++KLW + +
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
+ +E N ++ + P S ++ FS R++
Sbjct: 195 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 228
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAG----------------------------- 503
G S D + ++W RI R+M
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 226
Query: 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLW----------DVSSGECVRIFIGH----R 547
H + VDCVRW + I + S + + W + E +G +
Sbjct: 227 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 284
Query: 548 SMILSLAMSPD--GRYMASGDEDGTIMMWDLA-----SGRCVTPLMGHTSC---VWTLAY 597
I + S D + +A G++ G + +WDL +C T + H C + ++
Sbjct: 285 CDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT--LTHHKCGAAIRQTSF 342
Query: 598 SCEGSLLASGSADCTVKLWD 617
S + S+L + D ++ WD
Sbjct: 343 SRDSSILIAVCDDASIWRWD 362
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
GH GPV+ ++ G + S S D + +W + + + + H+ V VQ+ P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHI-------------N 516
G +S D + P+ I+ H V+ W
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
TG +D V++W +S + GH + +A SP YMAS +D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
T ++W D G L+ +W ++S G++LA D V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 568 DGTIMMWDLASGRCVTPL------MGHTSCVWTLAY---------SCEGSLLASGSADCT 612
DG + + + +P+ +G S W A + E +G AD
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 613 VKLWDVTT--STKVLKTEEKSGTNRLRSLKTLPT 644
VK+W + T VL++ + ++ +R + PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 75
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+D + +W++ + V + GH V + Y G + S D ++KLW + +
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
+ +E N ++ + P S ++ FS R++
Sbjct: 196 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 229
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAG----------------------------- 503
G S D + ++W RI R+M
Sbjct: 171 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227
Query: 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLW----------DVSSGECVRIFIGH----R 547
H + VDCVRW + I + S + + W + E +G +
Sbjct: 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285
Query: 548 SMILSLAMSPD--GRYMASGDEDGTIMMWDLA-----SGRCVTPLMGHTSC---VWTLAY 597
I + S D + +A G++ G + +WDL +C T + H C + ++
Sbjct: 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT--LTHHKCGAAIRQTSF 343
Query: 598 SCEGSLLASGSADCTVKLWD 617
S + S+L + D ++ WD
Sbjct: 344 SRDSSILIAVCDDASIWRWD 363
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 74
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
+D + +W++ + V + GH V + Y G + S D ++KLW + +
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
+ +E N ++ + P S ++ FS R++
Sbjct: 195 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 228
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAG----------------------------- 503
G S D + ++W RI R+M
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 226
Query: 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLW----------DVSSGECVRIFIGH----R 547
H + VDCVRW + I + S + + W + E +G +
Sbjct: 227 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 284
Query: 548 SMILSLAMSPD--GRYMASGDEDGTIMMWDLA-----SGRCVTPLMGHTSC---VWTLAY 597
I + S D + +A G++ G + +WDL +C T + H C + ++
Sbjct: 285 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT--LTHHKCGAAIRQTSF 342
Query: 598 SCEGSLLASGSADCTVKLWD 617
S + S+L + D ++ WD
Sbjct: 343 SRDSSILIAVCDDASIWRWD 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 466 VWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD----CVRWHINCNYI 520
V DV+F+P G + + DR + + L+ + V + W ++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDL 576
AT +D T+R+WDV++ +CV+ + + + + + + +GR + S DGT+ ++L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYEL 326
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
+ + GH + L + L SGS D + W
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 518 NYIATGSSD-KTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
NY+A G + T++++ +S E + R+ +++SP Y+A+GD G I+++D
Sbjct: 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYD 516
Query: 576 LASGRCVTPLMG-HTSCVWTLAY----------SCEGSLLASGSADCTVKLWDVTTSTKV 624
L S T TS + +++ E L+A+GS D + ++ V K+
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKI 576
Query: 625 LKT--EEKSGTNRL 636
+K K G N L
Sbjct: 577 IKALNAHKDGVNNL 590
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 548 SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVT-------PLMGHTSCVWTLAYSC 599
S + + SPD G ++ + D I +D SG + P+ G ++ L++
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG---IFALSW-L 262
Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLK 626
+ A+ AD T+++WDVTTS V K
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQK 289
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 543 FIGH-RSMILSLAMSP--DGRYMASGDEDGTIMMW 574
F GH S++ ++ SP +Y+ SGDE G +++W
Sbjct: 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
GH GPV+ ++ G + S S D + +W + + + + H+ V VQ+ P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHI-------------N 516
G +S D + P+ I+ H V+ W
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
TG +D V++W +S + GH + +A SP Y+AS +D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
T ++W D G L+ +W ++S G++LA D V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 568 DGTIMMWDLASGRCVTPL------MGHTSCVWTLAY---------SCEGSLLASGSADCT 612
DG + + + +P+ +G S W A + E +G AD
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 613 VKLWDVTT--STKVLKTEEKSGTNRLRSLKTLPT 644
VK+W + T VL++ + ++ +R + PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 466 VWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD----CVRWHINCNYI 520
V DV+F+P G + + DR + + L+ + V + W ++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDL 576
AT +D T+R+WDV++ +CV+ + + + + + + +GR + S DGT+ ++L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYEL 326
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
+ + GH + L + L SGS D + W
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 48/260 (18%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWST----KLNANLVCY----KGHNYPV--WD 468
GH+ + + + +PL +S S D I WS+ + ++NL+ K Y WD
Sbjct: 337 GHNKGITALTVNPL----ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 392
Query: 469 VQFNPQG---HYF------ASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDCVRWH---- 514
G H F AS+++D TA + + D + L+ G + + VR +
Sbjct: 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI--IKSVRLNSPGS 450
Query: 515 ---INCNYIATGSSD-KTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
++ NY+A G + T++++ +S E + R+ +++SP Y+A+GD G
Sbjct: 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 510
Query: 570 TIMMWDLASGRCVTPLMG-HTSCVWTLAY----------SCEGSLLASGSADCTVKLWDV 618
I+++DL S T TS + +++ E L+A+GS D + ++ V
Sbjct: 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570
Query: 619 TTSTKVLKT--EEKSGTNRL 636
K++K K G N L
Sbjct: 571 KRPMKIIKALNAHKDGVNNL 590
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 548 SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVT-------PLMGHTSCVWTLAYSC 599
S + + SPD G ++ + D I +D SG + P+ G ++ L++
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG---IFALSW-L 262
Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLK 626
+ A+ AD T+++WDVTTS V K
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQK 289
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 543 FIGH-RSMILSLAMSP--DGRYMASGDEDGTIMMW 574
F GH S++ ++ SP +Y+ SGDE G +++W
Sbjct: 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 9/191 (4%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV----QFNPQGHYFASSSHDRTARIWS 491
IL +S + LW +L+ K Y D+ G S D + ++W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGE-CVRI-FIGHRS 548
+ + L+ H S+V+CV + I + D + LWD + RI F +
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227
Query: 549 MILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLAS 606
+ S+ P+ A GDE G + + ++ + H+ + LAYS S LAS
Sbjct: 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287
Query: 607 GSADCTVKLWD 617
S DCTV + D
Sbjct: 288 ISEDCTVAVLD 298
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 34/205 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S+ DG+ G D S+KVWD L Q+AV Y
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWD---LSQKAV-------------------------LKSY 177
Query: 418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ 474
HS V + P D I LS D I LW T+ A + + + V ++P+
Sbjct: 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237
Query: 475 -GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLW 532
FA + ++ + A H ++ + + + + ++A+ S D TV +
Sbjct: 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297
Query: 533 DVSSGECVRIFIGHRSMILSLAMSP 557
D E R + HR + +A SP
Sbjct: 298 DADFSEVFRD-LSHRDFVTGVAWSP 321
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
GH GPV+ ++ G + S S D + +W + + + + H+ V VQ+ P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHI-------------N 516
G +S D + P+ I+ H V+ W
Sbjct: 111 EYGPXLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
TG +D V++W +S + GH + +A SP Y AS +D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
T ++W D G L+ +W ++S G++LA D V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 62 AHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASS 121
Query: 568 DGTIMMWDLASGRCVTPL------MGHTSCVWTLAY---------SCEGSLLASGSADCT 612
DG + + + +P+ +G S W A + E +G AD
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 613 VKLWDVTT--STKVLKTEEKSGTNRLRSLKTLPT 644
VK+W + T VL++ + ++ +R + PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTI 571
+N N S + T RL D G +R+F ++ SL +S R + +GD G +
Sbjct: 175 LNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSADCTVKLWDV 618
++ ++ G+ + L H V +A + C LA+ S D TVK+WD+
Sbjct: 234 ILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 255 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTI 571
+N N S + T RL D G +R+F ++ SL +S R + +GD G +
Sbjct: 175 LNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSADCTVKLWDV 618
++ ++ G+ + L H V +A + C LA+ S D TVK+WD+
Sbjct: 234 ILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 255 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTI 571
+N N S + T RL D G +R+F ++ SL +S R + +GD G +
Sbjct: 176 LNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 234
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSADCTVKLWDV 618
++ ++ G+ + L H V +A + C LA+ S D TVK+WD+
Sbjct: 235 ILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 256 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 310
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 311 RLLTTDQKSEIRVYSASQWDCPLGLIPH 338
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQFNPQG 475
H V A F+P D+++ +SS D T++LW + K + + H PV FNP
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 476 HYFASSSHDRT-ARIW-SMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATG---- 523
++ R R++ S D +P +I+ HL+ + WH + I G
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 320
Query: 524 -----SSDKTVRLWDVSSGECV-RIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWD 575
+ +T+ ++D +SG V ++ + + I+SL SP G +ASG I++W+
Sbjct: 321 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWN 378
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQFNPQG 475
H V A F+P D+++ +SS D T++LW + K + + H PV FNP
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 476 HYFASSSHDRT-ARIW-SMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATG---- 523
++ R R++ S D +P +I+ HL+ + WH + I G
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 321
Query: 524 -----SSDKTVRLWDVSSGECV-RIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWD 575
+ +T+ ++D +SG V ++ + + I+SL SP G +ASG I++W+
Sbjct: 322 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWN 379
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 57/256 (22%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFS-PL-GDFILSSSADTTIRLWSTK-------------- 451
NG + +GH GPV+ +++ P+ G+ + S S D + +W +
Sbjct: 44 NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103
Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDV 508
+ N VC+ H+Y G A S D + + + + +I H
Sbjct: 104 SSVNSVCWAPHDY----------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 509 DCVRWHINC--------------NYI---ATGSSDKTVRLW-DVSSGECV--RIFIGHRS 548
+ V W NYI A+G D ++LW + G+ + H
Sbjct: 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213
Query: 549 MILSLAMSPD----GRYMASGDEDGTIMMW--DLASGRCVTPLMGH--TSCVWTLAYSCE 600
+ +A +P +AS +DG + +W D AS +P + H VW +++S
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273
Query: 601 GSLLASGSADCTVKLW 616
++LA D V LW
Sbjct: 274 ANILAVSGGDNKVTLW 289
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 468 DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MAGHLSDVDCVRWH--INCNYIATG 523
D Q + G A+ S DR+ +I+ + + I + GH V V W + N +A+
Sbjct: 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC 77
Query: 524 SSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMM 573
S D+ V +W +G E GH S + S+ +P G +A G DG I +
Sbjct: 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 520 IATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWD 575
+AT SSD++V+++DV +G + I GH + +A + G +AS D +++W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 576 LASGRCVTP--LMGHTSCVWTLAYSCE--GSLLASGSADCTVKL 615
+G GH S V ++ ++ G +LA GS+D + L
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMI------LSLAMSPDGRYMASGDED---GT 570
IATG ++ TV++ ++S+ + F SMI S+ SP G +A + G
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 571 IMMWDLASGRCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
I +++ G + L H+S V +L+++ G L S D ++ WD
Sbjct: 270 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Query: 618 VTTSTKV 624
V T ++
Sbjct: 330 VKTKERI 336
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
H S ++SL+ + G + S DG + WD+ + +T L H
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 53/316 (16%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN-----DTTPREDIIG----------- 406
G++ A +DSSL++W + + + LQ ++ D + II
Sbjct: 35 GTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94
Query: 407 ----PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT-TIRLWSTKLNANLVCYKG 461
N S + HS V + F+ D +L+S + I +W + N
Sbjct: 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW----DMNKCTESP 150
Query: 462 HNYP-------------VWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIM------ 501
NY V + +N H FAS+ A IW + + + +
Sbjct: 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210
Query: 502 AGHLSDVDCVRWHI-NCNYIATGS---SDKTVRLWDVSSGECV--RIFIGHRSMILSLAM 555
+G + V WH N +AT + +D ++ +WD+ + + GH+ ILSL
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 556 S-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTV 613
D + S D T+++W+ S ++ + + ++ E L A S D +
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330
Query: 614 KLWDVTTSTKVLKTEE 629
++ + T L +E
Sbjct: 331 EVQTLQNLTNTLDEQE 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMI------LSLAMSPDGRYMASGDED---GT 570
IATG ++ TV++ ++S+ + F SMI S+ SP G +A + G
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 571 IMMWDLASGRCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
I +++ G + L H+S V +L+++ G L S D ++ WD
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Query: 618 VTTSTKV 624
V T ++
Sbjct: 320 VKTKERI 326
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
H S ++SL+ + G + S DG + WD+ + +T L H
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMW----DLASGRCVTPLMGHTSCVWTLAYSCE 600
GH ++ + GR++A+ D I ++ D ++ H S + + ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 601 --GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658
G ++AS S D TVKLW+ EE SG R L TL +YS++F+ +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 659 L 659
L
Sbjct: 123 L 123
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 67
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC 95
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
H VW+++++ G++L+S D V+LW T S +
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 388 VSSGLQGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIR 446
V QG +D+ E + N + + + H+G V+S S++ G + S+ D +R
Sbjct: 272 VDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 447 LWSTKLNANLVC 458
LW + C
Sbjct: 332 LWKATYSNEFKC 343
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 554 AMSPDGRYMASGDEDGTIMMWDL-ASGRCVTPLMGHTSCV------WTLAYSCEGSLLAS 606
A S RY+A+GD G + +W+L A V + GH + L + +
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 607 GSADCTVKLWD 617
GS D TVK+WD
Sbjct: 135 GSRDGTVKVWD 145
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMW----DLASGRCVTPLMGHTSCVWTLAYSCE 600
GH ++ + GR++A+ D I ++ D ++ H S + + ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 601 --GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658
G ++AS S D TVKLW+ EE SG R L TL +YS++F+ +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 659 L 659
L
Sbjct: 123 L 123
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 67
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC 95
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
H VW+++++ G++L+S D V+LW T S +
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 393 QGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451
QG +D+ E + N + + + H+G V+S S++ G + S+ D +RLW
Sbjct: 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
Query: 452 LNANLVC 458
+ C
Sbjct: 337 YSNEFKC 343
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMW----DLASGRCVTPLMGHTSCVWTLAYSCE 600
GH ++ + GR++A+ D I ++ D ++ H S + + ++
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 601 --GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658
G ++AS S D TVKLW+ EE SG R L TL +YS++F+ +
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWNKLCTLNDSKGSLYSVKFAPAH 120
Query: 659 L 659
L
Sbjct: 121 L 121
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 65
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEEC 93
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
H VW+++++ G++L+S D V+LW T S +
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 338
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 393 QGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451
QG +D+ E + N + + + H+G V+S S++ G + S+ D +RLW
Sbjct: 275 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 334
Query: 452 LNANLVC 458
+ C
Sbjct: 335 YSNEFKC 341
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 449 STKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDR 494
S + + NLV Y N P+W Q G+Y DR I+ DR
Sbjct: 55 SMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDR 101
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQ 274
Q N ++ WG L ++ +E TGL +D KAEG K P GG +
Sbjct: 91 QRNPADLPWGKL--GVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAK 142
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQ 274
Q N ++ WG L ++ +E TGL +D KAEG K P GG +
Sbjct: 91 QRNPADLPWGKL--GVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAK 142
>pdb|1OQ1|A Chain A, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|B Chain B, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|C Chain C, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|D Chain D, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
Length = 223
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 370 FSDSSLKVWDMAKLGQQAV------SSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
F D + WD + + Q + ++G++GE D+ P+ RKR+ T + HSG
Sbjct: 59 FPDGIIVTWDFSPIEQPGLCXLFFAAAGIRGE-------DLFDPSLRKRTGTYPEYHSGD 111
Query: 424 VYSASFS 430
+ + S
Sbjct: 112 INALHLS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,820,349
Number of Sequences: 62578
Number of extensions: 840320
Number of successful extensions: 3674
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 544
length of query: 670
length of database: 14,973,337
effective HSP length: 105
effective length of query: 565
effective length of database: 8,402,647
effective search space: 4747495555
effective search space used: 4747495555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)