Query 005913
Match_columns 670
No_of_seqs 844 out of 3838
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 9E-102 2E-106 821.3 48.8 634 1-667 19-706 (707)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-46 2.3E-51 369.2 26.2 282 343-668 107-473 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-45 1.1E-49 362.2 24.3 280 347-669 171-453 (459)
4 KOG0286 G-protein beta subunit 100.0 2.9E-39 6.3E-44 307.6 32.7 281 345-669 49-338 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-41 1.6E-45 332.7 20.9 261 328-617 195-458 (459)
6 KOG0271 Notchless-like WD40 re 100.0 4.6E-40 1E-44 322.6 23.8 259 330-617 137-479 (480)
7 KOG0284 Polyadenylation factor 100.0 3E-39 6.4E-44 319.7 18.3 277 351-670 96-374 (464)
8 KOG0279 G protein beta subunit 100.0 5.9E-37 1.3E-41 290.4 32.0 292 346-669 10-306 (315)
9 KOG0273 Beta-transducin family 100.0 3.2E-37 6.9E-42 310.3 30.3 273 351-669 235-516 (524)
10 cd08044 TAF5_NTD2 TAF5_NTD2 is 100.0 8.2E-39 1.8E-43 287.4 13.9 132 64-195 1-132 (133)
11 PF04494 TFIID_90kDa: WD40 ass 100.0 1.6E-38 3.5E-43 288.6 14.2 133 59-191 7-142 (142)
12 KOG0295 WD40 repeat-containing 100.0 2.5E-36 5.5E-41 295.3 24.0 281 346-669 103-399 (406)
13 KOG0286 G-protein beta subunit 100.0 2.1E-35 4.6E-40 281.3 29.6 264 330-617 77-343 (343)
14 KOG0273 Beta-transducin family 100.0 1E-35 2.2E-40 299.5 27.3 289 346-669 173-475 (524)
15 KOG0265 U5 snRNP-specific prot 100.0 2E-35 4.4E-40 282.5 26.7 281 346-669 42-331 (338)
16 cd00200 WD40 WD40 domain, foun 100.0 3E-34 6.4E-39 292.1 36.9 281 346-669 4-284 (289)
17 KOG0315 G-protein beta subunit 100.0 1.3E-34 2.7E-39 270.1 30.4 284 327-654 17-308 (311)
18 KOG0285 Pleiotropic regulator 100.0 3E-35 6.5E-40 286.6 27.0 293 340-669 140-432 (460)
19 KOG0266 WD40 repeat-containing 100.0 3E-34 6.6E-39 313.9 33.8 281 346-667 153-443 (456)
20 KOG0263 Transcription initiati 100.0 6E-35 1.3E-39 311.6 24.3 237 418-669 375-642 (707)
21 KOG0279 G protein beta subunit 100.0 5.3E-34 1.2E-38 270.3 27.9 247 344-620 56-314 (315)
22 KOG0291 WD40-repeat-containing 100.0 1.7E-33 3.6E-38 297.3 33.7 303 339-669 294-605 (893)
23 KOG0315 G-protein beta subunit 100.0 1.6E-33 3.6E-38 262.6 28.0 263 363-669 10-281 (311)
24 KOG0284 Polyadenylation factor 100.0 4.1E-35 9E-40 290.4 14.9 263 329-621 117-382 (464)
25 PLN00181 protein SPA1-RELATED; 100.0 2.8E-32 6E-37 319.8 41.1 298 347-669 479-786 (793)
26 KOG0316 Conserved WD40 repeat- 100.0 3.5E-33 7.6E-38 258.4 25.2 281 339-666 5-290 (307)
27 KOG0291 WD40-repeat-containing 100.0 1.7E-32 3.6E-37 289.7 33.4 277 350-669 264-543 (893)
28 KOG0305 Anaphase promoting com 100.0 8.7E-34 1.9E-38 298.6 23.8 296 294-621 161-463 (484)
29 KOG0645 WD40 repeat protein [G 100.0 3.7E-32 8.1E-37 256.7 32.0 288 343-669 6-304 (312)
30 KOG0295 WD40 repeat-containing 100.0 1.8E-33 3.9E-38 275.3 22.0 247 345-618 144-405 (406)
31 KOG0281 Beta-TrCP (transducin 100.0 2.8E-34 6E-39 278.6 16.0 270 350-667 196-468 (499)
32 KOG0293 WD40 repeat-containing 100.0 2.1E-33 4.6E-38 278.2 22.6 292 336-669 209-506 (519)
33 KOG0296 Angio-associated migra 100.0 4.8E-32 1E-36 265.5 28.6 280 345-669 58-391 (399)
34 KOG0282 mRNA splicing factor [ 100.0 1.7E-33 3.7E-38 284.7 18.3 288 339-669 202-498 (503)
35 KOG0319 WD40-repeat-containing 100.0 1.8E-32 3.9E-37 289.5 26.3 280 346-669 318-612 (775)
36 KOG0318 WD40 repeat stress pro 100.0 3.6E-31 7.9E-36 269.8 33.1 281 345-669 184-553 (603)
37 KOG0276 Vesicle coat complex C 100.0 6.7E-32 1.4E-36 279.6 26.7 281 346-669 8-292 (794)
38 KOG0285 Pleiotropic regulator 100.0 1.8E-32 4E-37 267.2 21.2 242 411-669 141-382 (460)
39 KOG0266 WD40 repeat-containing 100.0 1.9E-31 4.1E-36 291.9 29.5 250 343-619 195-454 (456)
40 KOG0292 Vesicle coat complex C 100.0 1.8E-31 4E-36 285.4 25.6 276 350-668 8-314 (1202)
41 KOG0319 WD40-repeat-containing 100.0 1.2E-31 2.6E-36 283.3 23.3 254 344-621 358-621 (775)
42 cd00200 WD40 WD40 domain, foun 100.0 5E-30 1.1E-34 260.9 34.2 260 329-617 30-289 (289)
43 KOG0318 WD40 repeat stress pro 100.0 5.7E-30 1.2E-34 261.1 33.7 309 347-668 55-509 (603)
44 KOG0283 WD40 repeat-containing 100.0 5.2E-31 1.1E-35 284.0 27.3 270 349-621 265-578 (712)
45 KOG0645 WD40 repeat protein [G 100.0 7.6E-30 1.6E-34 241.1 29.5 235 413-668 6-253 (312)
46 KOG0296 Angio-associated migra 100.0 3E-30 6.5E-35 253.0 27.6 260 329-619 85-398 (399)
47 KOG1407 WD40 repeat protein [F 100.0 2.9E-30 6.3E-35 242.6 26.1 279 347-669 16-295 (313)
48 KOG0281 Beta-TrCP (transducin 100.0 5.5E-32 1.2E-36 262.7 13.0 258 325-623 211-481 (499)
49 KOG0276 Vesicle coat complex C 100.0 3E-30 6.4E-35 267.5 26.3 259 328-615 33-295 (794)
50 KOG0275 Conserved WD40 repeat- 100.0 3.2E-31 6.9E-36 255.1 17.6 286 348-669 210-502 (508)
51 KOG0313 Microtubule binding pr 100.0 4.8E-30 1E-34 252.5 26.1 274 348-669 102-411 (423)
52 KOG0973 Histone transcription 100.0 5.8E-30 1.3E-34 282.2 28.5 294 346-669 7-348 (942)
53 KOG0277 Peroxisomal targeting 100.0 2E-30 4.3E-35 242.8 21.0 261 331-618 39-308 (311)
54 KOG0306 WD40-repeat-containing 100.0 9.5E-30 2.1E-34 268.8 27.8 280 344-669 366-657 (888)
55 KOG0643 Translation initiation 100.0 2.3E-29 5E-34 237.2 26.6 292 346-669 5-310 (327)
56 PTZ00421 coronin; Provisional 100.0 1.4E-28 3.1E-33 268.5 34.8 257 352-623 21-294 (493)
57 KOG0289 mRNA splicing factor [ 100.0 2.9E-29 6.3E-34 250.6 26.4 276 352-668 220-498 (506)
58 PLN00181 protein SPA1-RELATED; 100.0 2.1E-28 4.6E-33 287.0 36.9 239 350-618 531-792 (793)
59 KOG0310 Conserved WD40 repeat- 100.0 2.1E-29 4.6E-34 255.6 24.4 275 348-669 23-302 (487)
60 KOG0292 Vesicle coat complex C 100.0 7.8E-29 1.7E-33 265.4 28.9 263 329-621 30-323 (1202)
61 KOG1446 Histone H3 (Lys4) meth 100.0 5.4E-28 1.2E-32 234.1 32.0 275 347-666 10-295 (311)
62 KOG0299 U3 snoRNP-associated p 100.0 8.6E-29 1.9E-33 249.4 26.9 302 341-666 132-445 (479)
63 KOG0278 Serine/threonine kinas 100.0 7.3E-30 1.6E-34 238.2 17.6 279 345-669 8-290 (334)
64 KOG0316 Conserved WD40 repeat- 100.0 4.3E-29 9.2E-34 231.4 22.5 237 413-668 9-249 (307)
65 KOG0288 WD40 repeat protein Ti 100.0 3.6E-30 7.9E-35 255.8 16.3 291 336-669 160-454 (459)
66 KOG0265 U5 snRNP-specific prot 100.0 8.5E-29 1.9E-33 237.2 25.1 262 327-617 66-336 (338)
67 KOG0640 mRNA cleavage stimulat 100.0 3.7E-29 8E-34 239.9 22.0 264 345-619 106-426 (430)
68 KOG0641 WD40 repeat protein [G 100.0 2.1E-27 4.5E-32 218.5 32.2 305 340-669 21-342 (350)
69 KOG0282 mRNA splicing factor [ 100.0 4.6E-30 9.9E-35 259.9 15.9 261 328-617 235-503 (503)
70 PTZ00420 coronin; Provisional 100.0 1.3E-27 2.8E-32 262.1 36.4 247 369-658 50-318 (568)
71 KOG0277 Peroxisomal targeting 100.0 8E-29 1.7E-33 232.1 22.6 236 420-669 59-302 (311)
72 KOG0313 Microtubule binding pr 100.0 1.8E-28 3.8E-33 241.6 25.7 264 328-620 123-419 (423)
73 KOG0274 Cdc4 and related F-box 100.0 6.1E-28 1.3E-32 263.8 29.9 266 350-669 207-475 (537)
74 KOG0772 Uncharacterized conser 100.0 3.7E-28 8.1E-33 247.1 24.5 292 339-669 155-480 (641)
75 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.9E-32 229.1 26.7 269 351-664 27-311 (347)
76 KOG0293 WD40 repeat-containing 100.0 2.3E-28 5.1E-33 242.5 20.6 249 344-621 262-515 (519)
77 KOG0275 Conserved WD40 repeat- 100.0 1.2E-27 2.5E-32 230.6 23.9 242 347-617 259-507 (508)
78 KOG0268 Sof1-like rRNA process 100.0 1.2E-28 2.5E-33 241.3 16.8 273 347-669 62-338 (433)
79 KOG0294 WD40 repeat-containing 100.0 3E-27 6.5E-32 227.9 25.8 246 344-623 36-285 (362)
80 KOG0973 Histone transcription 100.0 2.3E-27 5.1E-32 261.7 27.6 266 346-621 64-357 (942)
81 KOG0264 Nucleosome remodeling 100.0 2.4E-27 5.2E-32 239.3 23.8 264 339-620 112-405 (422)
82 PTZ00421 coronin; Provisional 100.0 2.2E-26 4.7E-31 251.4 32.9 233 347-600 71-314 (493)
83 KOG0274 Cdc4 and related F-box 100.0 9.2E-27 2E-31 254.6 29.2 260 329-625 227-488 (537)
84 KOG0310 Conserved WD40 repeat- 100.0 4.3E-27 9.4E-32 238.9 24.3 244 347-621 64-311 (487)
85 KOG0306 WD40-repeat-containing 100.0 5.7E-27 1.2E-31 248.0 25.1 263 329-622 393-667 (888)
86 KOG0305 Anaphase promoting com 100.0 1.6E-26 3.5E-31 243.8 27.7 268 354-669 180-454 (484)
87 KOG0643 Translation initiation 100.0 1.7E-26 3.6E-31 218.0 24.2 234 416-666 5-251 (327)
88 KOG0641 WD40 repeat protein [G 100.0 1.6E-25 3.5E-30 206.2 29.9 258 338-619 76-349 (350)
89 KOG0308 Conserved WD40 repeat- 100.0 2.1E-27 4.5E-32 247.9 19.0 239 361-621 35-287 (735)
90 KOG0300 WD40 repeat-containing 99.9 1.7E-26 3.8E-31 222.0 21.0 281 346-667 143-467 (481)
91 KOG0278 Serine/threonine kinas 99.9 5.1E-27 1.1E-31 219.3 16.1 247 345-623 53-301 (334)
92 KOG1036 Mitotic spindle checkp 99.9 2.5E-25 5.5E-30 214.5 28.1 267 351-666 13-294 (323)
93 KOG0283 WD40 repeat-containing 99.9 3E-26 6.5E-31 247.3 24.2 232 419-668 265-568 (712)
94 PTZ00420 coronin; Provisional 99.9 3.4E-25 7.5E-30 243.0 32.7 218 439-669 50-286 (568)
95 KOG0301 Phospholipase A2-activ 99.9 4.9E-26 1.1E-30 239.4 24.8 270 346-668 9-280 (745)
96 KOG1407 WD40 repeat protein [F 99.9 3.3E-26 7.2E-31 215.4 20.8 237 415-668 14-253 (313)
97 KOG0640 mRNA cleavage stimulat 99.9 3.7E-26 8E-31 219.4 20.8 256 413-668 104-418 (430)
98 KOG0288 WD40 repeat protein Ti 99.9 2.2E-26 4.7E-31 229.0 18.5 257 328-616 195-458 (459)
99 KOG0267 Microtubule severing p 99.9 2.2E-27 4.8E-32 250.3 10.6 236 417-667 24-259 (825)
100 KOG0639 Transducin-like enhanc 99.9 5.9E-26 1.3E-30 230.1 20.3 278 347-668 415-696 (705)
101 KOG0289 mRNA splicing factor [ 99.9 2.2E-25 4.9E-30 222.9 23.2 232 422-667 220-453 (506)
102 KOG0264 Nucleosome remodeling 99.9 2E-24 4.2E-29 218.3 27.5 255 413-668 116-396 (422)
103 KOG0772 Uncharacterized conser 99.9 1.8E-25 4E-30 227.5 20.0 242 414-667 160-430 (641)
104 KOG2055 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 219.1 25.6 278 350-669 212-505 (514)
105 KOG1539 WD repeat protein [Gen 99.9 7.6E-24 1.6E-28 227.0 32.6 295 329-668 181-639 (910)
106 KOG2096 WD40 repeat protein [G 99.9 4.2E-24 9.1E-29 206.1 26.2 282 346-667 81-394 (420)
107 KOG1274 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 229.7 30.7 270 348-665 10-289 (933)
108 KOG0646 WD40 repeat protein [G 99.9 1.1E-24 2.3E-29 220.4 22.5 221 420-656 80-329 (476)
109 KOG0300 WD40 repeat-containing 99.9 4.5E-25 9.8E-30 212.3 18.8 209 413-622 140-389 (481)
110 KOG0301 Phospholipase A2-activ 99.9 1.5E-24 3.3E-29 228.3 24.3 252 331-621 36-290 (745)
111 KOG1332 Vesicle coat complex C 99.9 5.1E-25 1.1E-29 205.6 18.1 248 348-620 8-287 (299)
112 KOG0308 Conserved WD40 repeat- 99.9 3.4E-25 7.3E-30 231.5 16.1 224 431-669 35-278 (735)
113 KOG2445 Nuclear pore complex c 99.9 1.2E-23 2.6E-28 202.5 25.4 248 348-620 10-319 (361)
114 KOG0299 U3 snoRNP-associated p 99.9 3.8E-24 8.1E-29 216.0 22.2 239 349-618 200-455 (479)
115 KOG2048 WD40 repeat protein [G 99.9 6.8E-23 1.5E-27 215.6 32.0 277 350-668 24-311 (691)
116 KOG1446 Histone H3 (Lys4) meth 99.9 8.4E-23 1.8E-27 198.2 29.9 257 331-620 37-304 (311)
117 KOG0269 WD40 repeat-containing 99.9 1E-24 2.3E-29 231.9 18.1 283 351-669 39-333 (839)
118 KOG1332 Vesicle coat complex C 99.9 1.9E-24 4E-29 201.8 17.6 240 417-668 7-278 (299)
119 KOG1408 WD40 repeat protein [F 99.9 1E-23 2.2E-28 221.6 24.8 324 330-668 346-705 (1080)
120 KOG0267 Microtubule severing p 99.9 1.4E-25 3.1E-30 236.7 9.8 237 347-611 24-260 (825)
121 KOG0646 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 215.0 20.7 242 350-620 80-351 (476)
122 KOG0269 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 231.4 16.1 245 354-623 90-344 (839)
123 KOG1273 WD40 repeat protein [G 99.9 3.8E-23 8.2E-28 199.4 24.1 267 354-664 26-311 (405)
124 KOG1408 WD40 repeat protein [F 99.9 9E-24 2E-28 222.0 21.2 246 347-620 455-714 (1080)
125 KOG1063 RNA polymerase II elon 99.9 5.3E-23 1.1E-27 216.6 25.8 314 344-669 184-641 (764)
126 KOG4283 Transcription-coupled 99.9 1.1E-22 2.5E-27 194.4 24.8 291 349-669 41-358 (397)
127 KOG0639 Transducin-like enhanc 99.9 7.2E-24 1.6E-28 215.1 17.2 259 331-618 441-703 (705)
128 KOG0650 WD40 repeat nucleolar 99.9 8.2E-23 1.8E-27 211.7 24.0 295 338-669 387-728 (733)
129 KOG0270 WD40 repeat-containing 99.9 4.4E-23 9.5E-28 207.5 21.3 262 354-624 176-454 (463)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-21 4.9E-26 201.0 34.8 260 330-623 11-283 (300)
131 KOG0302 Ribosome Assembly prot 99.9 7.1E-23 1.5E-27 201.9 21.9 254 414-668 144-431 (440)
132 KOG0294 WD40 repeat-containing 99.9 3.4E-22 7.3E-27 193.2 25.8 267 366-669 4-274 (362)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-21 1.1E-25 198.2 33.7 258 363-668 1-271 (300)
134 KOG0268 Sof1-like rRNA process 99.9 1.4E-23 3.1E-28 205.8 13.2 234 415-669 60-295 (433)
135 KOG0302 Ribosome Assembly prot 99.9 2.4E-22 5.2E-27 198.2 21.8 256 348-616 148-435 (440)
136 KOG2919 Guanine nucleotide-bin 99.9 1.7E-21 3.6E-26 188.8 24.8 286 352-667 50-361 (406)
137 KOG2106 Uncharacterized conser 99.9 1.4E-20 3.1E-25 191.7 32.3 231 352-617 247-519 (626)
138 KOG2096 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 189.0 23.0 243 415-666 80-351 (420)
139 KOG2445 Nuclear pore complex c 99.9 2.4E-21 5.1E-26 186.7 24.5 252 417-669 9-311 (361)
140 KOG1274 WD40 repeat protein [G 99.9 2E-21 4.3E-26 210.9 25.9 236 418-668 10-254 (933)
141 KOG1036 Mitotic spindle checkp 99.9 3.9E-21 8.4E-26 185.7 24.0 231 346-609 49-294 (323)
142 KOG4283 Transcription-coupled 99.9 2.4E-21 5.2E-26 185.3 22.3 209 416-625 38-282 (397)
143 KOG0647 mRNA export protein (c 99.9 3.4E-21 7.3E-26 185.3 23.2 249 328-608 48-312 (347)
144 KOG2106 Uncharacterized conser 99.9 3.4E-20 7.3E-25 189.0 31.0 273 350-667 199-512 (626)
145 KOG4328 WD40 protein [Function 99.9 3.3E-21 7.2E-26 194.6 23.1 281 348-667 183-485 (498)
146 KOG1539 WD repeat protein [Gen 99.9 3.8E-20 8.3E-25 198.8 31.8 314 327-669 131-599 (910)
147 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-21 4.9E-26 196.9 20.6 290 328-658 10-305 (673)
148 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4.1E-25 197.5 25.4 290 347-668 263-691 (764)
149 KOG0307 Vesicle coat complex C 99.9 5.4E-22 1.2E-26 220.4 13.3 234 421-669 64-320 (1049)
150 KOG0307 Vesicle coat complex C 99.9 1.6E-21 3.6E-26 216.6 16.9 254 348-623 61-331 (1049)
151 KOG0321 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 197.3 21.9 270 362-668 63-383 (720)
152 KOG2055 WD40 repeat protein [G 99.9 1.5E-20 3.1E-25 190.1 20.8 236 421-666 213-455 (514)
153 KOG1009 Chromatin assembly com 99.9 4.2E-20 9.1E-25 184.3 23.2 285 350-668 12-364 (434)
154 KOG1538 Uncharacterized conser 99.9 4.3E-20 9.3E-25 193.1 22.9 266 353-669 14-286 (1081)
155 KOG1273 WD40 repeat protein [G 99.9 3.6E-20 7.7E-25 179.0 20.3 236 424-666 26-269 (405)
156 KOG0270 WD40 repeat-containing 99.9 4.6E-20 9.9E-25 185.9 21.5 200 424-623 176-408 (463)
157 KOG1445 Tumor-specific antigen 99.9 4.8E-20 1E-24 191.8 21.2 150 508-670 630-788 (1012)
158 KOG0321 WD40 repeat-containing 99.9 5.1E-20 1.1E-24 192.6 21.3 253 344-622 93-394 (720)
159 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-20 2.8E-25 195.0 15.7 258 345-623 288-565 (577)
160 KOG2048 WD40 repeat protein [G 99.8 6E-19 1.3E-23 186.1 28.2 238 415-669 19-268 (691)
161 COG2319 FOG: WD40 repeat [Gene 99.8 6.7E-18 1.5E-22 180.9 37.2 281 346-667 60-350 (466)
162 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-20 1E-24 187.3 18.7 241 331-601 58-305 (673)
163 KOG0650 WD40 repeat nucleolar 99.8 1E-19 2.2E-24 189.0 21.0 240 413-669 392-673 (733)
164 KOG1007 WD repeat protein TSSC 99.8 3.4E-19 7.4E-24 170.3 22.0 255 413-669 55-354 (370)
165 KOG1034 Transcriptional repres 99.8 3.4E-19 7.4E-24 173.3 20.0 284 349-669 36-376 (385)
166 KOG1034 Transcriptional repres 99.8 1.3E-19 2.8E-24 176.2 17.1 241 349-619 87-383 (385)
167 KOG0290 Conserved WD40 repeat- 99.8 4.1E-18 8.9E-23 163.2 26.2 292 338-666 31-356 (364)
168 COG2319 FOG: WD40 repeat [Gene 99.8 7.7E-17 1.7E-21 172.7 38.9 294 330-669 134-435 (466)
169 KOG4328 WD40 protein [Function 99.8 5.8E-19 1.3E-23 178.5 19.5 244 413-666 178-440 (498)
170 KOG1007 WD repeat protein TSSC 99.8 2.5E-18 5.3E-23 164.5 20.7 254 346-620 58-362 (370)
171 KOG1587 Cytoplasmic dynein int 99.8 8.4E-18 1.8E-22 182.9 25.2 267 331-620 223-517 (555)
172 KOG0649 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 152.2 26.0 241 353-620 12-275 (325)
173 KOG0303 Actin-binding protein 99.8 1.2E-17 2.6E-22 166.1 23.0 209 413-623 73-298 (472)
174 KOG0322 G-protein beta subunit 99.8 1.7E-18 3.7E-23 163.8 15.4 249 340-618 3-322 (323)
175 KOG1524 WD40 repeat-containing 99.8 4.8E-18 1E-22 174.4 19.0 204 433-668 75-278 (737)
176 KOG1538 Uncharacterized conser 99.8 7.7E-18 1.7E-22 176.4 20.2 259 327-621 30-295 (1081)
177 KOG1963 WD40 repeat protein [G 99.8 7E-17 1.5E-21 175.7 28.2 289 349-667 203-530 (792)
178 KOG1188 WD40 repeat protein [G 99.8 3.2E-18 7E-23 167.5 15.5 229 364-620 41-347 (376)
179 KOG1009 Chromatin assembly com 99.8 2.3E-17 4.9E-22 164.9 21.1 265 346-623 60-376 (434)
180 KOG4227 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 162.9 21.2 299 346-667 51-378 (609)
181 KOG1517 Guanine nucleotide bin 99.8 4.5E-17 9.8E-22 178.8 24.7 283 352-669 1065-1374(1387)
182 KOG1587 Cytoplasmic dynein int 99.8 6E-17 1.3E-21 176.3 25.2 238 420-670 241-510 (555)
183 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.3E-22 162.5 17.1 232 352-610 105-361 (406)
184 KOG0644 Uncharacterized conser 99.8 7.6E-19 1.6E-23 188.3 9.9 264 347-664 186-456 (1113)
185 KOG2110 Uncharacterized conser 99.8 5.1E-16 1.1E-20 153.8 27.9 236 352-622 6-251 (391)
186 PRK11028 6-phosphogluconolacto 99.8 1.7E-15 3.6E-20 160.0 33.9 264 330-620 12-305 (330)
187 KOG1523 Actin-related protein 99.8 8.2E-17 1.8E-21 156.5 20.0 232 420-665 9-268 (361)
188 KOG1523 Actin-related protein 99.8 8.3E-17 1.8E-21 156.5 19.8 230 346-600 5-260 (361)
189 PRK01742 tolB translocation pr 99.7 9.4E-17 2E-21 175.3 22.3 220 415-657 197-426 (429)
190 KOG0303 Actin-binding protein 99.7 1.9E-16 4E-21 157.6 20.3 212 347-581 77-298 (472)
191 KOG1188 WD40 repeat protein [G 99.7 8.9E-17 1.9E-21 157.5 16.8 191 434-624 41-247 (376)
192 KOG0290 Conserved WD40 repeat- 99.7 3E-16 6.6E-21 150.5 19.4 245 348-615 93-361 (364)
193 KOG1272 WD40-repeat-containing 99.7 1.6E-17 3.5E-22 168.3 11.0 271 353-668 131-401 (545)
194 PRK11028 6-phosphogluconolacto 99.7 8.8E-15 1.9E-19 154.6 32.3 260 367-666 6-293 (330)
195 PRK01742 tolB translocation pr 99.7 4.7E-16 1E-20 169.8 23.1 232 331-600 185-426 (429)
196 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.6E-21 165.8 17.1 232 338-589 331-573 (577)
197 KOG2111 Uncharacterized conser 99.7 1.3E-14 2.7E-19 141.5 29.6 282 354-669 8-315 (346)
198 KOG0771 Prolactin regulatory e 99.7 1.2E-16 2.7E-21 160.9 15.4 196 425-621 148-356 (398)
199 KOG0322 G-protein beta subunit 99.7 2.7E-16 5.9E-21 149.0 13.8 240 413-669 6-316 (323)
200 KOG0649 WD40 repeat protein [G 99.7 3.2E-15 7E-20 140.1 20.3 197 422-624 11-240 (325)
201 KOG1524 WD40 repeat-containing 99.7 9.6E-16 2.1E-20 157.6 16.8 210 363-617 75-284 (737)
202 KOG0771 Prolactin regulatory e 99.7 8.6E-16 1.9E-20 154.9 15.7 195 355-578 148-355 (398)
203 KOG1272 WD40-repeat-containing 99.7 1.2E-16 2.6E-21 162.1 9.3 221 422-662 130-350 (545)
204 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.6E-19 142.4 24.1 228 422-669 6-241 (391)
205 KOG1240 Protein kinase contain 99.7 3E-14 6.6E-19 159.4 27.4 260 343-623 1040-1338(1431)
206 KOG2394 WD40 protein DMR-N9 [G 99.7 6.4E-15 1.4E-19 152.0 19.9 193 430-622 182-455 (636)
207 KOG1445 Tumor-specific antigen 99.7 3.8E-15 8.1E-20 155.7 17.9 240 359-622 587-847 (1012)
208 PRK03629 tolB translocation pr 99.7 9.5E-14 2.1E-18 151.4 29.9 220 417-657 194-428 (429)
209 KOG1517 Guanine nucleotide bin 99.6 8.8E-15 1.9E-19 161.1 20.6 250 352-621 1110-1383(1387)
210 KOG1963 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 152.9 27.0 276 356-665 21-417 (792)
211 KOG2139 WD40 repeat protein [G 99.6 5.8E-14 1.3E-18 138.7 23.4 238 353-622 100-386 (445)
212 KOG1310 WD40 repeat protein [G 99.6 2.8E-15 6.1E-20 154.6 14.4 214 414-627 43-311 (758)
213 KOG2139 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 139.2 22.3 241 422-667 99-366 (445)
214 KOG1354 Serine/threonine prote 99.6 2.6E-14 5.7E-19 140.2 20.1 293 350-667 24-426 (433)
215 PRK03629 tolB translocation pr 99.6 9E-14 2E-18 151.6 26.6 219 347-599 194-427 (429)
216 PRK04922 tolB translocation pr 99.6 1.4E-13 3E-18 150.7 27.1 200 416-620 198-412 (433)
217 KOG1334 WD40 repeat protein [G 99.6 4.9E-15 1.1E-19 151.3 14.0 281 346-668 137-458 (559)
218 PRK05137 tolB translocation pr 99.6 3.6E-13 7.8E-18 147.6 30.0 202 415-621 195-414 (435)
219 KOG1310 WD40 repeat protein [G 99.6 4.9E-15 1.1E-19 152.9 13.9 213 346-585 45-311 (758)
220 PRK04922 tolB translocation pr 99.6 2E-13 4.3E-18 149.5 25.6 221 345-599 197-432 (433)
221 PRK02889 tolB translocation pr 99.6 2.2E-13 4.8E-18 148.6 25.6 190 417-611 191-392 (427)
222 KOG0644 Uncharacterized conser 99.6 1E-15 2.2E-20 164.7 6.8 233 412-670 181-420 (1113)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 2.2E-14 4.7E-19 148.1 16.0 173 361-557 183-384 (636)
224 KOG4497 Uncharacterized conser 99.6 1.7E-13 3.7E-18 133.7 21.2 261 356-664 13-379 (447)
225 PRK02889 tolB translocation pr 99.6 1.9E-13 4.1E-18 149.2 24.3 220 347-600 191-425 (427)
226 KOG4497 Uncharacterized conser 99.6 5.1E-13 1.1E-17 130.5 24.2 269 352-667 49-423 (447)
227 KOG1240 Protein kinase contain 99.6 2E-13 4.3E-18 153.0 23.9 219 409-627 1036-1281(1431)
228 KOG4227 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 135.6 21.2 246 348-620 102-388 (609)
229 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.7E-18 135.6 21.3 206 416-624 100-325 (412)
230 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 4E-18 142.3 20.8 269 348-622 48-346 (703)
231 PRK05137 tolB translocation pr 99.6 9.3E-13 2E-17 144.3 27.1 219 346-599 196-432 (435)
232 PF08662 eIF2A: Eukaryotic tra 99.5 7.5E-13 1.6E-17 127.9 21.1 155 425-585 9-186 (194)
233 PF08662 eIF2A: Eukaryotic tra 99.5 7.6E-13 1.6E-17 127.8 20.4 149 467-620 9-180 (194)
234 KOG2111 Uncharacterized conser 99.5 3.7E-12 8.1E-17 124.4 23.5 229 423-669 7-249 (346)
235 KOG3881 Uncharacterized conser 99.5 4E-12 8.7E-17 127.3 20.5 221 352-600 106-342 (412)
236 TIGR02800 propeller_TolB tol-p 99.5 2.7E-11 5.9E-16 132.3 28.9 199 415-618 183-396 (417)
237 PRK00178 tolB translocation pr 99.5 4.7E-11 1E-15 130.9 29.7 200 416-620 193-407 (430)
238 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-10 2.7E-15 123.6 31.7 268 355-668 40-337 (369)
239 KOG1334 WD40 repeat protein [G 99.4 4.8E-13 1E-17 137.0 11.9 267 331-622 165-469 (559)
240 KOG2321 WD40 repeat protein [G 99.4 9.1E-12 2E-16 129.9 21.1 234 418-668 48-335 (703)
241 TIGR02800 propeller_TolB tol-p 99.4 2.5E-11 5.5E-16 132.5 25.4 218 346-597 184-416 (417)
242 PRK00178 tolB translocation pr 99.4 4.2E-11 9.1E-16 131.3 27.2 221 346-600 193-428 (430)
243 PRK04792 tolB translocation pr 99.4 6E-11 1.3E-15 130.0 28.3 200 416-620 212-426 (448)
244 KOG0974 WD-repeat protein WDR6 99.4 6.4E-12 1.4E-16 139.6 20.5 197 422-621 88-290 (967)
245 PRK01029 tolB translocation pr 99.4 1.1E-10 2.4E-15 127.0 28.6 201 420-622 183-406 (428)
246 PRK01029 tolB translocation pr 99.4 6.1E-11 1.3E-15 129.0 26.0 222 349-601 182-426 (428)
247 KOG2041 WD40 repeat protein [G 99.4 2.3E-11 4.9E-16 129.4 21.3 285 350-666 13-328 (1189)
248 PF10282 Lactonase: Lactonase, 99.4 2.3E-09 4.9E-14 113.8 36.2 249 348-620 33-323 (345)
249 PF10282 Lactonase: Lactonase, 99.4 1.3E-09 2.9E-14 115.6 34.3 237 421-668 36-313 (345)
250 PRK04792 tolB translocation pr 99.4 1E-10 2.2E-15 128.3 25.5 218 348-599 214-446 (448)
251 KOG4547 WD40 repeat-containing 99.4 5.7E-11 1.2E-15 125.1 20.7 188 431-620 3-221 (541)
252 KOG2315 Predicted translation 99.3 5.3E-10 1.2E-14 117.1 25.9 263 351-667 34-375 (566)
253 PF02239 Cytochrom_D1: Cytochr 99.3 7.1E-09 1.5E-13 110.2 34.0 256 364-665 6-287 (369)
254 KOG4547 WD40 repeat-containing 99.3 3.4E-10 7.3E-15 119.4 22.6 192 360-578 2-221 (541)
255 KOG1409 Uncharacterized conser 99.3 1.8E-10 3.9E-15 113.7 19.1 203 349-578 66-271 (404)
256 KOG0974 WD-repeat protein WDR6 99.3 5.3E-11 1.2E-15 132.4 16.6 195 357-578 93-289 (967)
257 KOG1064 RAVE (regulator of V-A 99.3 3E-11 6.4E-16 139.9 14.9 194 416-624 2203-2403(2439)
258 KOG0280 Uncharacterized conser 99.3 9.7E-10 2.1E-14 106.6 22.6 233 421-665 69-320 (339)
259 KOG2314 Translation initiation 99.3 1.1E-09 2.5E-14 114.1 23.9 269 354-667 213-513 (698)
260 KOG1354 Serine/threonine prote 99.3 2.2E-10 4.7E-15 113.0 17.1 247 420-668 24-351 (433)
261 KOG1409 Uncharacterized conser 99.3 5.7E-10 1.2E-14 110.2 19.5 246 347-621 20-272 (404)
262 KOG0280 Uncharacterized conser 99.2 5.4E-10 1.2E-14 108.3 18.5 246 352-621 70-335 (339)
263 KOG1064 RAVE (regulator of V-A 99.2 3.4E-11 7.3E-16 139.5 11.7 221 351-612 2208-2439(2439)
264 COG2706 3-carboxymuconate cycl 99.2 2.4E-08 5.1E-13 100.3 30.4 242 417-669 35-313 (346)
265 COG2706 3-carboxymuconate cycl 99.2 4.1E-08 8.9E-13 98.6 31.6 252 347-622 35-324 (346)
266 PF04762 IKI3: IKI3 family; I 99.2 1.6E-08 3.4E-13 118.9 32.4 291 350-669 74-449 (928)
267 KOG4190 Uncharacterized conser 99.2 3E-11 6.4E-16 125.1 7.4 205 413-621 727-950 (1034)
268 COG5170 CDC55 Serine/threonine 99.2 9.7E-10 2.1E-14 107.0 17.4 245 351-620 26-368 (460)
269 KOG2315 Predicted translation 99.2 4E-09 8.7E-14 110.6 23.1 231 355-621 129-392 (566)
270 PLN02919 haloacid dehalogenase 99.2 1.9E-08 4E-13 120.5 32.1 252 355-623 571-892 (1057)
271 PF04762 IKI3: IKI3 family; I 99.2 5E-08 1.1E-12 114.7 33.8 316 349-667 118-507 (928)
272 COG5354 Uncharacterized protei 99.1 7.5E-09 1.6E-13 107.3 22.7 283 350-669 31-360 (561)
273 KOG4190 Uncharacterized conser 99.1 2.6E-10 5.7E-15 118.2 11.9 297 338-669 722-1029(1034)
274 KOG4532 WD40-like repeat conta 99.1 1.6E-08 3.5E-13 96.9 21.3 232 362-621 83-333 (344)
275 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.4E-07 3.1E-12 98.3 29.2 241 359-625 53-336 (352)
276 COG4946 Uncharacterized protei 99.1 7.4E-08 1.6E-12 99.0 25.7 190 428-622 273-480 (668)
277 COG5354 Uncharacterized protei 99.1 5.3E-08 1.2E-12 101.1 24.5 257 330-622 53-351 (561)
278 KOG2314 Translation initiation 99.1 5.6E-08 1.2E-12 101.7 24.3 275 351-668 249-559 (698)
279 KOG0309 Conserved WD40 repeat- 99.0 2.9E-09 6.3E-14 114.2 14.1 244 351-620 67-340 (1081)
280 PF15492 Nbas_N: Neuroblastoma 99.0 3.2E-07 6.9E-12 89.7 26.4 230 357-622 3-262 (282)
281 COG4946 Uncharacterized protei 99.0 1.3E-07 2.9E-12 97.1 24.7 172 432-608 331-507 (668)
282 PRK04043 tolB translocation pr 99.0 1.8E-07 3.9E-12 101.3 27.6 191 353-578 189-401 (419)
283 PRK04043 tolB translocation pr 99.0 2.4E-07 5.2E-12 100.4 28.4 202 443-668 169-389 (419)
284 PF08450 SGL: SMP-30/Gluconola 99.0 1.8E-06 3.9E-11 87.1 31.8 217 356-608 4-244 (246)
285 KOG2041 WD40 repeat protein [G 99.0 4.9E-08 1.1E-12 104.6 20.5 245 346-621 66-339 (1189)
286 KOG1832 HIV-1 Vpr-binding prot 99.0 4.1E-10 8.8E-15 122.6 4.8 272 346-665 1096-1378(1516)
287 KOG1912 WD40 repeat protein [G 98.9 8.5E-08 1.8E-12 103.9 21.4 237 354-620 18-305 (1062)
288 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.8E-06 3.9E-11 90.1 30.6 217 429-665 53-318 (352)
289 TIGR03300 assembly_YfgL outer 98.9 5.8E-07 1.3E-11 96.8 28.0 182 433-624 145-343 (377)
290 COG5170 CDC55 Serine/threonine 98.9 1.7E-08 3.7E-13 98.5 14.2 247 420-668 25-359 (460)
291 PF08450 SGL: SMP-30/Gluconola 98.9 2.7E-06 5.9E-11 85.8 30.5 215 426-663 4-242 (246)
292 PLN02919 haloacid dehalogenase 98.9 7.7E-07 1.7E-11 106.8 30.0 239 425-668 571-880 (1057)
293 KOG3914 WD repeat protein WDR4 98.9 2.4E-08 5.3E-13 101.0 14.5 164 354-544 65-232 (390)
294 KOG2695 WD40 repeat protein [G 98.9 5.1E-09 1.1E-13 103.6 8.0 153 467-623 215-380 (425)
295 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.6E-13 101.5 12.4 160 465-627 64-231 (390)
296 KOG1912 WD40 repeat protein [G 98.9 1.6E-06 3.4E-11 94.3 26.9 201 348-576 52-303 (1062)
297 KOG4714 Nucleoporin [Nuclear s 98.8 4.9E-08 1.1E-12 93.4 12.6 176 334-536 72-255 (319)
298 PF13360 PQQ_2: PQQ-like domai 98.8 2.4E-06 5.1E-11 85.5 25.4 187 432-624 35-235 (238)
299 KOG0309 Conserved WD40 repeat- 98.8 4.3E-08 9.3E-13 105.5 12.2 202 421-623 24-236 (1081)
300 KOG1832 HIV-1 Vpr-binding prot 98.8 4.2E-09 9E-14 114.9 4.5 197 411-622 1091-1294(1516)
301 KOG4532 WD40-like repeat conta 98.8 5.9E-07 1.3E-11 86.4 17.5 202 441-659 50-263 (344)
302 TIGR03300 assembly_YfgL outer 98.7 1.4E-06 3.1E-11 93.8 23.0 175 434-616 191-376 (377)
303 KOG4714 Nucleoporin [Nuclear s 98.7 1.1E-07 2.4E-12 91.0 12.1 195 424-620 39-255 (319)
304 KOG2066 Vacuolar assembly/sort 98.7 3.4E-07 7.3E-12 100.2 17.2 182 421-620 39-234 (846)
305 PF07433 DUF1513: Protein of u 98.7 2.6E-05 5.6E-10 78.8 27.3 227 354-612 7-278 (305)
306 KOG2066 Vacuolar assembly/sort 98.7 9E-07 2E-11 96.9 17.7 180 352-577 40-233 (846)
307 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.3E-12 93.3 9.4 167 428-598 218-401 (425)
308 PF07433 DUF1513: Protein of u 98.6 7.3E-05 1.6E-09 75.6 28.1 198 424-623 7-251 (305)
309 KOG1920 IkappaB kinase complex 98.6 7.8E-06 1.7E-10 93.5 23.0 236 350-618 67-364 (1265)
310 PF15492 Nbas_N: Neuroblastoma 98.6 1.3E-05 2.8E-10 78.7 21.5 199 355-588 47-270 (282)
311 KOG0882 Cyclophilin-related pe 98.6 8E-07 1.7E-11 91.1 13.2 248 350-625 8-311 (558)
312 KOG0882 Cyclophilin-related pe 98.5 9E-07 2E-11 90.8 12.8 247 420-668 8-298 (558)
313 KOG1275 PAB-dependent poly(A) 98.5 2.2E-06 4.8E-11 94.9 16.2 149 422-575 178-340 (1118)
314 KOG1275 PAB-dependent poly(A) 98.5 2.8E-06 6.1E-11 94.1 15.8 180 433-617 147-340 (1118)
315 KOG2114 Vacuolar assembly/sort 98.5 2.5E-05 5.3E-10 86.6 22.9 206 353-590 27-257 (933)
316 PF00400 WD40: WD domain, G-be 98.4 6E-07 1.3E-11 62.1 6.1 39 579-617 1-39 (39)
317 KOG2114 Vacuolar assembly/sort 98.4 3.9E-05 8.6E-10 85.0 22.9 193 428-622 30-246 (933)
318 KOG3617 WD40 and TPR repeat-co 98.4 1.2E-05 2.6E-10 88.3 18.6 278 349-664 13-373 (1416)
319 PF00400 WD40: WD domain, G-be 98.4 9.4E-07 2E-11 61.1 6.5 39 537-575 1-39 (39)
320 PF11768 DUF3312: Protein of u 98.4 0.00014 3E-09 78.2 25.6 111 467-579 209-331 (545)
321 KOG1645 RING-finger-containing 98.4 1.9E-05 4.1E-10 80.3 17.5 204 414-620 186-462 (463)
322 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00021 4.5E-09 76.2 26.5 231 421-667 42-348 (353)
323 PRK02888 nitrous-oxide reducta 98.4 6.8E-05 1.5E-09 82.5 22.4 187 432-620 140-405 (635)
324 PRK11138 outer membrane biogen 98.3 0.00014 2.9E-09 78.9 25.0 186 433-624 160-358 (394)
325 PF13360 PQQ_2: PQQ-like domai 98.3 8.4E-05 1.8E-09 74.2 21.7 178 442-623 2-195 (238)
326 KOG1920 IkappaB kinase complex 98.3 6.6E-05 1.4E-09 86.2 22.4 198 421-621 68-324 (1265)
327 PF11768 DUF3312: Protein of u 98.3 6.7E-05 1.5E-09 80.6 19.1 151 506-658 206-369 (545)
328 PF08596 Lgl_C: Lethal giant l 98.2 0.00031 6.6E-09 75.2 24.1 264 353-618 3-334 (395)
329 PRK11138 outer membrane biogen 98.2 0.00045 9.6E-09 74.9 24.4 177 434-618 206-393 (394)
330 KOG1008 Uncharacterized conser 98.2 1.1E-06 2.4E-11 93.9 3.2 197 422-621 57-277 (783)
331 KOG1008 Uncharacterized conser 98.1 1.9E-06 4E-11 92.2 3.8 239 352-618 57-334 (783)
332 PF04053 Coatomer_WDAD: Coatom 98.1 0.00065 1.4E-08 73.7 22.9 225 348-621 29-264 (443)
333 KOG1333 Uncharacterized conser 98.1 1.8E-05 3.9E-10 72.8 8.9 114 4-125 6-120 (241)
334 PRK02888 nitrous-oxide reducta 98.1 0.0015 3.2E-08 72.2 25.3 179 427-608 198-450 (635)
335 KOG3617 WD40 and TPR repeat-co 98.1 0.00012 2.6E-09 80.7 16.4 224 354-608 62-374 (1416)
336 COG0823 TolB Periplasmic compo 98.0 0.00091 2E-08 72.3 23.0 174 445-622 175-361 (425)
337 PF06977 SdiA-regulated: SdiA- 98.0 0.0031 6.7E-08 62.9 24.5 198 416-616 16-247 (248)
338 KOG3621 WD40 repeat-containing 98.0 0.00035 7.6E-09 76.2 18.9 264 328-622 53-356 (726)
339 PF08596 Lgl_C: Lethal giant l 98.0 0.00091 2E-08 71.6 21.8 201 423-624 3-295 (395)
340 PF02897 Peptidase_S9_N: Proly 98.0 0.011 2.3E-07 64.6 30.8 241 354-623 126-408 (414)
341 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0026 5.7E-08 68.9 25.3 175 422-603 81-273 (410)
342 COG0823 TolB Periplasmic compo 97.9 0.0005 1.1E-08 74.4 18.3 191 417-611 188-391 (425)
343 COG3386 Gluconolactonase [Carb 97.9 0.005 1.1E-07 63.6 24.3 184 423-609 67-275 (307)
344 PF06433 Me-amine-dh_H: Methyl 97.9 0.018 3.9E-07 59.2 27.3 248 355-627 39-328 (342)
345 PF08513 LisH: LisH; InterPro 97.9 2.1E-05 4.5E-10 49.1 3.8 27 4-30 1-27 (27)
346 KOG3621 WD40 repeat-containing 97.9 0.00016 3.4E-09 78.9 12.8 145 420-565 32-187 (726)
347 PF04053 Coatomer_WDAD: Coatom 97.9 0.0018 3.9E-08 70.3 21.2 182 416-615 27-219 (443)
348 PF06977 SdiA-regulated: SdiA- 97.8 0.015 3.3E-07 58.0 24.8 198 347-574 17-247 (248)
349 cd00216 PQQ_DH Dehydrogenases 97.8 0.023 5E-07 63.3 29.1 182 441-627 173-432 (488)
350 PF08553 VID27: VID27 cytoplas 97.7 0.0025 5.5E-08 72.9 20.8 142 433-576 493-646 (794)
351 cd00216 PQQ_DH Dehydrogenases 97.7 0.02 4.4E-07 63.8 27.6 189 434-627 111-382 (488)
352 PF14583 Pectate_lyase22: Olig 97.7 0.034 7.4E-07 58.3 26.9 273 358-666 42-370 (386)
353 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.017 3.6E-07 61.6 25.5 244 351-608 42-346 (353)
354 COG3391 Uncharacterized conser 97.7 0.021 4.5E-07 61.5 25.9 217 354-600 76-309 (381)
355 COG3391 Uncharacterized conser 97.7 0.024 5.2E-07 61.0 25.9 199 423-623 75-287 (381)
356 PF00780 CNH: CNH domain; Int 97.6 0.042 9.1E-07 56.1 26.0 220 361-623 5-259 (275)
357 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.05 1.1E-06 53.1 23.7 149 432-584 62-213 (354)
358 KOG1645 RING-finger-containing 97.5 0.00025 5.4E-09 72.4 8.0 94 529-623 175-270 (463)
359 PF04841 Vps16_N: Vps16, N-ter 97.5 0.031 6.8E-07 60.6 24.9 170 444-622 62-249 (410)
360 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.072 1.6E-06 52.0 23.7 144 433-578 23-166 (354)
361 COG3386 Gluconolactonase [Carb 97.5 0.038 8.3E-07 57.1 23.8 187 428-619 31-243 (307)
362 PF02897 Peptidase_S9_N: Proly 97.4 0.13 2.7E-06 56.1 28.5 195 423-619 125-357 (414)
363 PF03178 CPSF_A: CPSF A subuni 97.4 0.04 8.7E-07 57.8 23.6 179 433-616 42-262 (321)
364 PF03178 CPSF_A: CPSF A subuni 97.4 0.022 4.8E-07 59.8 21.4 173 443-620 2-203 (321)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.17 3.8E-06 54.2 26.7 75 547-623 307-402 (415)
366 KOG4640 Anaphase-promoting com 97.3 0.0011 2.5E-08 71.5 9.6 94 421-515 20-115 (665)
367 KOG4640 Anaphase-promoting com 97.3 0.0012 2.7E-08 71.3 9.7 93 506-599 21-115 (665)
368 PRK13616 lipoprotein LpqB; Pro 97.3 0.026 5.7E-07 63.8 20.9 150 464-621 350-527 (591)
369 PHA02713 hypothetical protein; 97.2 0.03 6.5E-07 63.4 21.1 204 444-668 273-523 (557)
370 PRK10115 protease 2; Provision 97.2 0.69 1.5E-05 53.8 32.6 236 354-622 129-397 (686)
371 PRK13616 lipoprotein LpqB; Pro 97.2 0.025 5.4E-07 64.0 20.0 181 422-613 350-562 (591)
372 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 44.0 5.7 39 579-617 2-40 (40)
373 PF08553 VID27: VID27 cytoplas 97.2 0.0074 1.6E-07 69.2 15.5 134 482-619 501-647 (794)
374 smart00320 WD40 WD40 repeats. 97.1 0.0014 3.1E-08 43.3 5.9 39 537-575 2-40 (40)
375 PHA02713 hypothetical protein; 97.1 0.035 7.7E-07 62.8 20.1 186 432-621 303-535 (557)
376 KOG4441 Proteins containing BT 97.1 0.032 6.9E-07 63.1 19.5 217 433-670 285-535 (571)
377 KOG2444 WD40 repeat protein [G 97.1 0.00066 1.4E-08 64.8 4.9 142 478-622 33-180 (238)
378 PF06433 Me-amine-dh_H: Methyl 97.1 0.31 6.8E-06 50.3 24.2 153 434-587 148-330 (342)
379 KOG2079 Vacuolar assembly/sort 97.1 0.0073 1.6E-07 69.2 13.5 102 362-492 98-202 (1206)
380 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.032 6.8E-07 47.7 13.5 100 354-488 2-109 (111)
381 PF07995 GSDH: Glucose / Sorbo 96.9 0.49 1.1E-05 49.8 25.5 238 353-614 3-330 (331)
382 smart00667 LisH Lissencephaly 96.9 0.0018 3.8E-08 42.9 4.3 31 2-32 2-32 (34)
383 KOG2079 Vacuolar assembly/sort 96.9 0.019 4.2E-07 65.9 14.8 100 433-534 99-202 (1206)
384 KOG4441 Proteins containing BT 96.9 0.093 2E-06 59.4 20.3 187 426-620 327-547 (571)
385 PF05096 Glu_cyclase_2: Glutam 96.8 0.68 1.5E-05 46.3 24.6 182 422-608 45-249 (264)
386 KOG2395 Protein involved in va 96.8 0.02 4.3E-07 61.1 13.0 139 477-619 348-500 (644)
387 KOG1897 Damage-specific DNA bi 96.7 0.81 1.8E-05 52.8 25.9 270 353-669 585-891 (1096)
388 PF14583 Pectate_lyase22: Olig 96.7 0.92 2E-05 47.8 24.7 220 428-666 42-302 (386)
389 PF05694 SBP56: 56kDa selenium 96.7 0.74 1.6E-05 49.0 24.0 234 432-665 86-392 (461)
390 PF14870 PSII_BNR: Photosynthe 96.7 0.92 2E-05 46.8 33.1 273 348-665 13-294 (302)
391 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.16 3.5E-06 43.4 15.7 101 508-615 2-110 (111)
392 PHA03098 kelch-like protein; P 96.7 0.07 1.5E-06 60.3 18.1 185 432-621 294-513 (534)
393 PRK10115 protease 2; Provision 96.7 1.2 2.5E-05 51.9 28.2 194 422-619 127-344 (686)
394 COG3204 Uncharacterized protei 96.7 0.39 8.4E-06 48.2 20.2 162 460-621 82-265 (316)
395 PF05694 SBP56: 56kDa selenium 96.6 1.2 2.5E-05 47.6 24.7 182 427-608 135-392 (461)
396 PF10647 Gmad1: Lipoprotein Lp 96.6 0.17 3.8E-06 51.0 18.3 153 507-668 25-187 (253)
397 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 1.1 2.3E-05 50.4 26.2 141 486-627 272-498 (527)
398 COG3204 Uncharacterized protei 96.6 0.42 9.2E-06 47.9 20.0 166 419-585 83-270 (316)
399 PF15390 DUF4613: Domain of un 96.6 0.087 1.9E-06 57.3 16.1 148 422-577 20-186 (671)
400 KOG4499 Ca2+-binding protein R 96.5 0.82 1.8E-05 44.3 20.4 135 463-599 108-263 (310)
401 TIGR02604 Piru_Ver_Nterm putat 96.5 1.1 2.3E-05 48.0 24.4 146 352-524 14-202 (367)
402 TIGR03074 PQQ_membr_DH membran 96.4 0.9 2E-05 53.0 24.7 195 433-628 194-486 (764)
403 PF05096 Glu_cyclase_2: Glutam 96.3 1 2.2E-05 45.0 21.1 195 465-664 46-249 (264)
404 KOG2444 WD40 repeat protein [G 96.3 0.015 3.3E-07 55.8 7.6 105 363-494 70-178 (238)
405 PF00780 CNH: CNH domain; Int 96.2 0.8 1.7E-05 46.6 21.1 145 432-583 6-171 (275)
406 PF10647 Gmad1: Lipoprotein Lp 96.2 1.6 3.5E-05 43.9 23.3 145 465-612 25-188 (253)
407 KOG2395 Protein involved in va 96.2 0.077 1.7E-06 56.8 12.8 134 516-666 344-491 (644)
408 TIGR02604 Piru_Ver_Nterm putat 96.1 2.3 4.9E-05 45.5 24.7 142 422-566 14-202 (367)
409 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.8 4E-05 43.8 24.1 201 423-624 24-284 (336)
410 KOG1897 Damage-specific DNA bi 96.1 3.4 7.5E-05 48.0 25.9 174 444-621 751-944 (1096)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 1.2 2.5E-05 50.2 22.7 190 433-624 69-338 (527)
412 PRK13684 Ycf48-like protein; P 96.0 2.5 5.5E-05 44.5 28.2 144 505-665 172-321 (334)
413 KOG1916 Nuclear protein, conta 96.0 0.0029 6.3E-08 70.9 1.7 199 415-619 126-374 (1283)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 3.1 6.8E-05 44.8 24.6 82 505-586 307-407 (415)
415 PHA03098 kelch-like protein; P 95.8 0.3 6.5E-06 55.2 17.2 103 516-621 342-466 (534)
416 COG3490 Uncharacterized protei 95.8 0.67 1.5E-05 46.2 16.4 157 509-668 71-247 (366)
417 PF12894 Apc4_WD40: Anaphase-p 95.7 0.038 8.2E-07 39.6 5.8 32 351-382 11-42 (47)
418 PHA02790 Kelch-like protein; P 95.5 0.6 1.3E-05 51.9 17.5 182 433-621 272-472 (480)
419 COG3490 Uncharacterized protei 95.5 1.1 2.4E-05 44.7 16.9 143 468-610 72-246 (366)
420 TIGR03118 PEPCTERM_chp_1 conse 95.5 3.4 7.3E-05 42.0 25.8 224 354-599 25-307 (336)
421 KOG3630 Nuclear pore complex, 95.4 0.16 3.4E-06 59.1 12.1 142 422-564 101-260 (1405)
422 PF14870 PSII_BNR: Photosynthe 95.3 4.1 8.8E-05 42.1 29.0 229 420-666 15-252 (302)
423 PF10168 Nup88: Nuclear pore c 95.3 6.8 0.00015 45.5 25.5 94 421-537 84-181 (717)
424 KOG2280 Vacuolar assembly/sort 95.3 3.5 7.6E-05 46.5 21.8 173 422-600 84-270 (829)
425 TIGR03074 PQQ_membr_DH membran 95.3 5.1 0.00011 46.9 24.5 153 432-585 259-485 (764)
426 PHA02790 Kelch-like protein; P 95.2 0.72 1.6E-05 51.3 17.0 134 515-668 317-457 (480)
427 PF12894 Apc4_WD40: Anaphase-p 95.1 0.072 1.6E-06 38.2 5.6 31 421-451 11-41 (47)
428 PF15390 DUF4613: Domain of un 95.0 0.72 1.6E-05 50.5 15.2 149 463-619 19-186 (671)
429 PRK13684 Ycf48-like protein; P 94.9 2.7 5.8E-05 44.3 19.3 149 463-617 172-329 (334)
430 KOG3630 Nuclear pore complex, 94.8 0.26 5.7E-06 57.4 11.8 141 464-606 101-260 (1405)
431 KOG0396 Uncharacterized conser 94.7 0.25 5.3E-06 50.7 10.2 149 3-176 115-266 (389)
432 PLN02153 epithiospecifier prot 94.5 6.1 0.00013 41.7 21.2 66 474-539 85-171 (341)
433 PF07995 GSDH: Glucose / Sorbo 94.4 7.8 0.00017 40.7 26.4 231 423-669 3-328 (331)
434 PF08728 CRT10: CRT10; InterP 94.3 2.3 4.9E-05 48.6 17.8 174 350-534 39-245 (717)
435 KOG4499 Ca2+-binding protein R 94.1 3.1 6.7E-05 40.5 15.4 131 425-557 112-263 (310)
436 KOG2659 LisH motif-containing 94.0 0.13 2.8E-06 49.8 6.2 169 2-186 25-197 (228)
437 KOG1916 Nuclear protein, conta 94.0 0.049 1.1E-06 61.5 3.9 179 442-623 110-327 (1283)
438 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.4E-05 49.4 15.3 110 465-576 31-155 (631)
439 KOG1983 Tomosyn and related SN 93.6 2.8 6.1E-05 50.6 17.8 72 546-623 197-268 (993)
440 TIGR03547 muta_rot_YjhT mutatr 93.5 9.2 0.0002 40.4 20.3 17 652-668 316-332 (346)
441 PLN00033 photosystem II stabil 93.3 14 0.0003 39.9 26.5 142 508-665 241-389 (398)
442 PLN02193 nitrile-specifier pro 93.3 15 0.00032 40.8 22.1 144 474-621 228-412 (470)
443 PF12234 Rav1p_C: RAVE protein 93.3 1.8 3.8E-05 49.0 14.6 112 548-665 30-147 (631)
444 COG5167 VID27 Protein involved 92.9 1.5 3.2E-05 47.1 12.4 142 474-619 478-632 (776)
445 PF14761 HPS3_N: Hermansky-Pud 92.6 6.3 0.00014 38.1 15.1 102 434-537 29-165 (215)
446 PF10168 Nup88: Nuclear pore c 92.5 4.4 9.6E-05 47.0 16.8 94 463-579 84-181 (717)
447 COG5276 Uncharacterized conser 92.4 13 0.00029 37.5 25.1 257 329-619 105-369 (370)
448 PRK14131 N-acetylneuraminic ac 92.4 15 0.00033 39.4 20.1 16 653-668 339-354 (376)
449 COG5167 VID27 Protein involved 92.4 6 0.00013 42.7 15.9 142 432-577 478-632 (776)
450 COG3823 Glutamine cyclotransfe 92.3 5.9 0.00013 37.9 14.2 172 432-607 55-247 (262)
451 KOG2377 Uncharacterized conser 91.9 20 0.00044 38.4 22.5 118 419-538 64-188 (657)
452 KOG2247 WD40 repeat-containing 91.7 0.07 1.5E-06 56.6 1.0 135 358-522 41-176 (615)
453 PF08728 CRT10: CRT10; InterP 91.7 6.2 0.00013 45.2 16.2 142 433-576 49-245 (717)
454 PF03022 MRJP: Major royal jel 91.3 18 0.0004 37.1 18.3 170 486-665 35-254 (287)
455 PF13449 Phytase-like: Esteras 91.1 22 0.00048 37.2 24.0 156 464-620 20-250 (326)
456 PLN00033 photosystem II stabil 90.9 26 0.00057 37.8 19.7 148 422-574 239-396 (398)
457 PF05935 Arylsulfotrans: Aryls 90.9 24 0.00052 39.2 20.0 149 469-621 153-369 (477)
458 PF14727 PHTB1_N: PTHB1 N-term 90.8 27 0.00059 37.8 30.2 147 362-534 36-203 (418)
459 KOG2247 WD40 repeat-containing 90.6 0.037 8.1E-07 58.6 -2.2 141 467-610 38-179 (615)
460 PF10313 DUF2415: Uncharacteri 90.5 1.1 2.4E-05 31.2 5.6 32 548-579 1-35 (43)
461 TIGR03548 mutarot_permut cycli 90.4 25 0.00054 36.7 21.1 135 474-610 72-233 (323)
462 COG1520 FOG: WD40-like repeat 90.0 22 0.00048 37.9 18.4 147 477-626 70-224 (370)
463 PF08801 Nucleoporin_N: Nup133 89.9 12 0.00027 40.7 16.7 32 590-621 190-221 (422)
464 COG5276 Uncharacterized conser 89.7 25 0.00054 35.6 26.4 194 421-622 86-288 (370)
465 PF07569 Hira: TUP1-like enhan 89.4 2 4.4E-05 42.2 9.0 66 513-579 18-97 (219)
466 COG4257 Vgb Streptogramin lyas 89.2 26 0.00057 35.2 19.5 196 422-620 62-263 (353)
467 KOG2377 Uncharacterized conser 88.9 8.3 0.00018 41.1 13.1 121 525-661 41-168 (657)
468 PF02333 Phytase: Phytase; In 88.8 36 0.00078 36.3 23.4 187 431-621 66-292 (381)
469 COG1520 FOG: WD40-like repeat 88.8 36 0.00079 36.3 19.9 190 435-627 70-276 (370)
470 PF07569 Hira: TUP1-like enhan 88.6 2.8 6.1E-05 41.2 9.4 66 555-621 18-97 (219)
471 KOG4460 Nuclear pore complex, 88.2 5.4 0.00012 43.2 11.4 29 507-535 105-133 (741)
472 PF13449 Phytase-like: Esteras 88.0 36 0.00077 35.7 17.8 150 505-663 19-231 (326)
473 KOG1900 Nuclear pore complex, 87.9 4.5 9.8E-05 48.5 11.7 137 483-622 97-275 (1311)
474 KOG4460 Nuclear pore complex, 87.9 9.1 0.0002 41.5 12.8 29 421-449 103-131 (741)
475 PF10313 DUF2415: Uncharacteri 87.6 1.6 3.6E-05 30.4 4.9 31 352-382 1-34 (43)
476 KOG1900 Nuclear pore complex, 87.4 5.7 0.00012 47.8 12.1 136 440-578 96-273 (1311)
477 TIGR03606 non_repeat_PQQ dehyd 87.2 51 0.0011 36.2 20.7 106 463-568 29-166 (454)
478 COG5290 IkappaB kinase complex 87.1 64 0.0014 37.2 21.3 66 420-492 75-141 (1243)
479 COG3823 Glutamine cyclotransfe 86.6 30 0.00064 33.4 14.1 185 474-665 55-248 (262)
480 KOG2280 Vacuolar assembly/sort 86.4 30 0.00064 39.5 16.2 178 442-624 63-251 (829)
481 TIGR03547 muta_rot_YjhT mutatr 85.6 51 0.0011 34.7 22.4 53 432-484 63-128 (346)
482 PF05935 Arylsulfotrans: Aryls 85.4 66 0.0014 35.7 19.6 117 427-547 153-313 (477)
483 TIGR03548 mutarot_permut cycli 84.6 49 0.0011 34.5 16.8 106 432-539 72-198 (323)
484 PF10214 Rrn6: RNA polymerase 84.1 99 0.0021 36.7 25.6 157 461-621 77-278 (765)
485 PRK14131 N-acetylneuraminic ac 83.7 66 0.0014 34.4 20.8 41 444-484 107-149 (376)
486 COG4590 ABC-type uncharacteriz 83.6 3.9 8.4E-05 43.5 7.5 163 459-624 216-391 (733)
487 PF14761 HPS3_N: Hermansky-Pud 83.1 27 0.00058 33.9 12.5 102 518-622 29-166 (215)
488 PRK13613 lipoprotein LpqB; Pro 82.9 48 0.001 37.8 16.6 146 507-665 364-525 (599)
489 PF12768 Rax2: Cortical protei 82.9 18 0.00039 36.9 12.0 113 485-597 16-144 (281)
490 TIGR03606 non_repeat_PQQ dehyd 82.5 48 0.001 36.4 15.8 109 500-610 24-166 (454)
491 KOG4659 Uncharacterized conser 82.5 1.3E+02 0.0028 36.9 22.4 26 640-665 655-680 (1899)
492 PF08801 Nucleoporin_N: Nup133 82.4 70 0.0015 34.8 17.5 31 548-578 190-220 (422)
493 COG5290 IkappaB kinase complex 81.4 41 0.00089 38.6 14.6 227 330-559 90-348 (1243)
494 PF11715 Nup160: Nucleoporin N 81.1 9.3 0.0002 43.3 10.4 72 473-544 156-257 (547)
495 KOG1898 Splicing factor 3b, su 81.1 1.3E+02 0.0028 36.0 18.8 173 444-620 854-1049(1205)
496 PF12657 TFIIIC_delta: Transcr 81.0 10 0.00022 35.7 9.0 32 590-621 86-123 (173)
497 PF12657 TFIIIC_delta: Transcr 80.5 8.2 0.00018 36.3 8.2 31 548-578 86-122 (173)
498 KOG2817 Predicted E3 ubiquitin 80.2 13 0.00028 39.0 9.8 121 3-137 116-239 (394)
499 PF11635 Med16: Mediator compl 79.3 1.4E+02 0.0031 35.3 24.3 79 590-669 260-343 (753)
500 PF11715 Nup160: Nucleoporin N 78.8 7.6 0.00016 44.0 8.7 71 515-585 156-256 (547)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9e-102 Score=821.26 Aligned_cols=634 Identities=40% Similarity=0.692 Sum_probs=507.6
Q ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCC-CCCC------------------CCCCc--------hhhccc
Q 005913 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNN-TNPI------------------DILND--------PELSKF 53 (670)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~-~~~~------------------~~~~~--------~~~~~~ 53 (670)
+.+++++++|++||+|+||++||++||+|+.+.+++.. ++.. ++..+ .++...
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 35789999999999999999999999999987665311 1100 00000 011111
Q ss_pred ccccccccC--ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHH
Q 005913 54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD 131 (670)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~ 131 (670)
. ..... -|+.|+.+|..||+||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|.++
T Consensus 99 ~---~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~ 175 (707)
T KOG0263|consen 99 K---ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES 175 (707)
T ss_pred h---ccccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence 0 01123 488899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEcCCC-CCCCCcccc
Q 005913 132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE 207 (670)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 207 (670)
|++|..+..++||++|+.++.||+|||+|+|++.+|++|++||++.+. .+|++|||+||.|+++.+. ++....+.+
T Consensus 176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~ 255 (707)
T KOG0263|consen 176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA 255 (707)
T ss_pred HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999877 8999999999999999873 222222222
Q ss_pred h-----hhcccCCchhhhcccccceeecCCcchhhhhhhhcccccchhhhhcccchhhhhcccCCCCCCCCCcchhhhhh
Q 005913 208 I-----VTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282 (670)
Q Consensus 208 ~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (670)
. ..++|. +..+.|+.++++|+++.+.+ ++++.... .+.+|. +.++..+ ..++.+
T Consensus 256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~------~e~~D~--------~~~~~~~--~~~~~~ 314 (707)
T KOG0263|consen 256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPIL------LEVEDD--------PNEPDNE--KLKKPK 314 (707)
T ss_pred hccccccccccc---chhhcccceeeecccccchh--hhhccccc------ccCccc--------ccccccc--ccccch
Confidence 1 135553 34567789999999998443 54432110 011111 1111100 011111
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCCCCh---HHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEE
Q 005913 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359 (670)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~f 359 (670)
+.+..... .+.+++ +|. .+.+|+|+... ..+.+.+.+.++++.+....+|++|+||++++..+++|+.|
T Consensus 315 ~~~~~~~~---k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f 386 (707)
T KOG0263|consen 315 KKKLLSEE---KKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF 386 (707)
T ss_pred hhhhhhhh---hccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence 11111000 111112 333 67888887655 56667889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCC-CCC--CC-CCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQG-END--TT-PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (670)
Q Consensus 360 s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (670)
|+|+++||.|+.|++|++|.+...+.......... ..+ .. ....+. ........+.+.||+++|++++|+|+.++
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCceeEEeecCCCceeeeeecccccc
Confidence 99999999999999999999985432221111100 000 00 011122 22334456679999999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC
Q 005913 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p 515 (670)
|++||+|++||+|++.+..+++.|+||..|||++.|+|.|.||||||.|++.++|..+..+|++++.+|.++|.|+.|||
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEE
Q 005913 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595 (670)
Q Consensus 516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl 595 (670)
|++|+++||.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|+++
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl 625 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL 625 (707)
T ss_pred cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCccccccc---------cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 596 AYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE---------EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 596 ~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.||.+|.+||+||.|++|++||+.......... .........++.++.++.+||.+|.|+++|.+||+|..
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~~ 705 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGPF 705 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEeccc
Confidence 999999999999999999999997755431110 01122344578899999999999999999999999875
Q ss_pred C
Q 005913 667 S 667 (670)
Q Consensus 667 d 667 (670)
.
T Consensus 706 ~ 706 (707)
T KOG0263|consen 706 E 706 (707)
T ss_pred C
Confidence 3
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-46 Score=369.23 Aligned_cols=282 Identities=31% Similarity=0.587 Sum_probs=255.7
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
|--.+.+|.+.|.|+.|+|+|..||+|+.|.++|+||+.+ .....+.++|..
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~~ 158 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHKN 158 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCcc
Confidence 3446788999999999999999999999999999999986 345677899999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEec-----CCCEEEEEECCCcEEEEECCCCc
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
.|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|...|++++|.| ..++|++++.||+++|||+..+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 9999999999999999999999999999988765 67899999999999987 56799999999999999999999
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-----------------------------------
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR----------------------------------- 541 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~----------------------------------- 541 (670)
++..+.+|..+|+|+.|--+ .+|++|+.|++|++|+...|.+.+
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999999644 489999999999999975543322
Q ss_pred --------------------------------------------EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 542 --------------------------------------------IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 542 --------------------------------------------~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
.+.+|..-|..+.||||++++|+++.|..|++||.+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence 223777889999999999999999999999999999
Q ss_pred CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657 (670)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~ 657 (670)
+|+.+..+++|-++|+.++|+.|.++|++|+.|.+++||++.+.. +...+++|...|+++.|+||
T Consensus 398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCceEEEEEecCC
Confidence 999999999999999999999999999999999999999998853 35578899999999999999
Q ss_pred CcEEEEeeCCC
Q 005913 658 NLLFAAGALSK 668 (670)
Q Consensus 658 ~~~La~gs~dg 668 (670)
|..+|+|+.|.
T Consensus 463 G~rV~sggkdk 473 (480)
T KOG0271|consen 463 GQRVASGGKDK 473 (480)
T ss_pred CceeecCCCce
Confidence 99999999885
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-45 Score=362.23 Aligned_cols=280 Identities=30% Similarity=0.504 Sum_probs=265.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
-.+...+|..+.||.|+..||+|+.+|.++||+... .....++.||.+.|.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~ 222 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA 222 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence 345677899999999999999999999999999875 2467789999999999
Q ss_pred EEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 427 l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+.|+|. +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+++++.+....||
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH 302 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence 999997 558999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
...|.+++|+|+|..+++|+.|..-||||+++|.++..+.+|..+|.+++|+|+|..||||+.|++++|||++..+.+..
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 585 ~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
+.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.+. .++.++.+|.+.|.++..++++.++++
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEEE
Confidence 999999999999999 7899999999999999998775 457888999999999999999999999
Q ss_pred eeCCCC
Q 005913 664 GALSKT 669 (670)
Q Consensus 664 gs~dgs 669 (670)
+++|.|
T Consensus 448 ~s~DRT 453 (459)
T KOG0272|consen 448 SSFDRT 453 (459)
T ss_pred eccCce
Confidence 999976
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=307.58 Aligned_cols=281 Identities=25% Similarity=0.394 Sum_probs=255.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.++.+|.+.|.|+.|++|++++++++.||.+.|||.-+. .....+.-.+..|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----------------------------nK~haipl~s~WV 100 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----------------------------NKVHAIPLPSSWV 100 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----------------------------cceeEEecCceeE
Confidence 578999999999999999999999999999999997652 2233344467899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
..++|+|.|+++|+|+.|+...||++.+. .....+.+|++-+.++.|.+|+ .|+|++.|.++.+||+++++.+
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE
Confidence 99999999999999999999999999865 2345688999999999999855 6899999999999999999999
Q ss_pred EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
..|.+|.++|.+++++| +++.+++|+.|+..++||++.+.+++.|.+|...|.+++|.|+|.-+++|++|+++++||++
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913 578 SGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 655 (670)
Q Consensus 578 ~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 655 (670)
..+.+..+... ..+|++++||..|++|++|..|.++.+||.-.++. +..+.+|.+.|.++..+
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~---------------vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER---------------VGVLAGHENRVSCLGVS 324 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce---------------EEEeeccCCeeEEEEEC
Confidence 99988887643 36899999999999999999999999999877643 45677999999999999
Q ss_pred cCCcEEEEeeCCCC
Q 005913 656 RRNLLFAAGALSKT 669 (670)
Q Consensus 656 ~~~~~La~gs~dgs 669 (670)
|||..+++|+.|.+
T Consensus 325 ~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 325 PDGMAVATGSWDST 338 (343)
T ss_pred CCCcEEEecchhHh
Confidence 99999999999864
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-41 Score=332.68 Aligned_cols=261 Identities=25% Similarity=0.453 Sum_probs=244.3
Q ss_pred cccceecCCCCCCceeEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
....+++|+...- ....+|.+|...|.++.|+|. +..||+|+.||++++|++++
T Consensus 195 wsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------------------- 250 (459)
T KOG0272|consen 195 WSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------------------- 250 (459)
T ss_pred cCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-----------------------
Confidence 3455677765443 345589999999999999997 66899999999999999875
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++..+....||...|.+++|.|||..+++||.|.
T Consensus 251 -----e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 251 -----ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred -----CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 235566889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMAS 564 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~s 564 (670)
.-+|||++++.++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|..-|+.+.|+| .|.+|+|
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
++.|++++||...++.+++.+.||.+.|.+++.++++..++|++.|.++++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-40 Score=322.62 Aligned_cols=259 Identities=31% Similarity=0.524 Sum_probs=234.1
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
..+++|+.... .+.+|..+|..-|.|++|||||+.||+|+.||.|++||-.+..
T Consensus 137 ~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------------------- 190 (480)
T KOG0271|consen 137 TTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------------------- 190 (480)
T ss_pred ceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------------------
Confidence 47788876543 3456889999999999999999999999999999999976522
Q ss_pred CccceeeeecCccCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913 410 RKRSYTLYQGHSGPVYSASFSP-----LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp-----~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
..-+.+.+|...|++++|.| ..++|+++|.||+|+|||+..+.++..+.+|+.+|+|+.|..+| ++++|+.|
T Consensus 191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence 24456889999999999976 56789999999999999999999999999999999999998666 89999999
Q ss_pred CcEEEEECCCCc--------------------------------------------------------------------
Q 005913 485 RTARIWSMDRIQ-------------------------------------------------------------------- 496 (670)
Q Consensus 485 g~v~lwd~~~~~-------------------------------------------------------------------- 496 (670)
++|++|+...+.
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 999999865321
Q ss_pred -----------eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 497 -----------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 497 -----------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
++..+.+|..-|+.+.|+||++++|+++-|+.|++||.++|+.+..|++|-++|+.++|+.|.++|++|
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence 333456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
+.|.++++||+++.+....+.+|...|+++.|+|||..+++|+.|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999999995
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=319.70 Aligned_cols=277 Identities=26% Similarity=0.506 Sum_probs=250.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
.-+|..+.|.|+|+.|++|+..|.+.+|+... ...-..++.|..+|.++.|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~ws 147 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKWS 147 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEEc
Confidence 45799999999999999999999999999653 11224467899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCee
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~ 509 (670)
+++.+++||+.+|.|++|+..- ..+..+.. |...|++++|+|+...|++++.||+|+|||....+..+.+.+|.-.|.
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 9999999999999999999874 44444554 558999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~ 589 (670)
|++|||....|++|+.|..|++||.++|.|+.++.+|...|..+.|+|++++|++++.|..++++|+++.+.+..+++|.
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 590 SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 590 ~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..|+++.|+| ...+|.+|+.||.|..|.+....++ ...-..|.+.|.+++|+|=|.+||+|+.|.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--------------GEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccc--------------cCCCcccccceeeeeccccceeEeecCCCc
Confidence 9999999999 6679999999999999999843322 223347888999999999999999999998
Q ss_pred CC
Q 005913 669 TS 670 (670)
Q Consensus 669 s~ 670 (670)
++
T Consensus 373 t~ 374 (464)
T KOG0284|consen 373 TV 374 (464)
T ss_pred ce
Confidence 64
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-37 Score=290.36 Aligned_cols=292 Identities=26% Similarity=0.413 Sum_probs=248.9
Q ss_pred EeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
++.+|.+.|+.++..+. ...+.+++.|..|.+|++... ....+...+.+.||+..|
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~v 66 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHFV 66 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceEe
Confidence 67889999999999986 678889999999999999752 112245778899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
..+..+++|++.+++|.|+++++||+.+++..+.+.+|...|.+++|++|++.+++|+.|+++.+|++-...........
T Consensus 67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS 146 (315)
T ss_pred cceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765444433332
Q ss_pred -CCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 505 -LSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 505 -~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
...|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 678999999998 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc-cCCCCCCeEEEEEecCCcE
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~fs~~~~~ 660 (670)
+..+ .|...|.+++|+|+.-+|+.+. +..|+|||+.+...+....... +.. .....-...+++|+++|..
T Consensus 227 lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~-------~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 227 LYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG-------IGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred eEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc-------cccccccCCcEEEEEEEcCCCcE
Confidence 8776 5788999999999976666665 4569999999877654432211 111 1222223567899999999
Q ss_pred EEEeeCCCC
Q 005913 661 FAAGALSKT 669 (670)
Q Consensus 661 La~gs~dgs 669 (670)
|.+|-.|+.
T Consensus 298 Lf~g~td~~ 306 (315)
T KOG0279|consen 298 LFAGYTDNV 306 (315)
T ss_pred EEeeecCCc
Confidence 999988763
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-37 Score=310.34 Aligned_cols=273 Identities=26% Similarity=0.501 Sum_probs=251.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
...|+|++|+.+|++||+|+.||.++||+... .....+..|.+||.++.|+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKWn 285 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKWN 285 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEEc
Confidence 46799999999999999999999999999763 3556778899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~ 510 (670)
..|++|++++.|+++.+||..++...+.+.-|..+-.++.|-.+ .-|++++.|+.|+++.+....|+.++.+|.+.|.+
T Consensus 286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence 99999999999999999999999999999999998888999854 46999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---------CEEEEEECCCeEEEEeCCCCee
Q 005913 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g---------~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
+.|+|.+..|++++.|++++||......++..+.+|...|+.+.|+|.| ..+++++.|++|++||+..+.+
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999999999999999999999999999999999999964 4799999999999999999999
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
+..+..|..+|++++|+|+|+++|+|+.||.|.||++..+.. +..+ .....|+.|+|+.+|..|
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l---------------~~s~-~~~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL---------------VKSY-QGTGGIFELCWNAAGDKL 508 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe---------------eEee-cCCCeEEEEEEcCCCCEE
Confidence 999999999999999999999999999999999999988753 2333 344569999999999999
Q ss_pred EEeeCCCC
Q 005913 662 AAGALSKT 669 (670)
Q Consensus 662 a~gs~dgs 669 (670)
+++..||+
T Consensus 509 ~~~~sd~~ 516 (524)
T KOG0273|consen 509 GACASDGS 516 (524)
T ss_pred EEEecCCC
Confidence 99888875
No 10
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=100.00 E-value=8.2e-39 Score=287.45 Aligned_cols=132 Identities=44% Similarity=0.815 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005913 64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH 143 (670)
Q Consensus 64 ~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (670)
|..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|+..|+++|++|++|++|+|
T Consensus 1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~ 80 (133)
T cd08044 1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH 80 (133)
T ss_pred ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 005913 144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS 195 (670)
Q Consensus 144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 195 (670)
+++|++++.||+|||+|+||+.++++|++||++.++.++++|||+|+.+++.
T Consensus 81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~ 132 (133)
T cd08044 81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR 132 (133)
T ss_pred HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999888763
No 11
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=100.00 E-value=1.6e-38 Score=288.59 Aligned_cols=133 Identities=44% Similarity=0.821 Sum_probs=123.8
Q ss_pred cccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005913 59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV 138 (670)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~ 138 (670)
..+.||..|+++|.+|++||++|||+||+||.++||||||||||+||.+|+.++|++||+||+++|...|.++|++|+.|
T Consensus 7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i 86 (142)
T PF04494_consen 7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI 86 (142)
T ss_dssp SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeE
Q 005913 139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN 191 (670)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~ 191 (670)
++|+|+++|++++.||+|||+|+||+.++.+|+.||+++++. +|++|||+||+
T Consensus 87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~ 142 (142)
T PF04494_consen 87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ 142 (142)
T ss_dssp -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998 99999999985
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-36 Score=295.27 Aligned_cols=281 Identities=27% Similarity=0.480 Sum_probs=262.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.++...|+.+-|+|+-.++++++.|++|++||..+ +...+.+.||...|.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF 154 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence 4567888999999999999999999999999999876 234567889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+++|+..|++|++|+.|-.+.+||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus 155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999999987 5778888899999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC---------------CCEEEEEECCC
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG 569 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~---------------g~~l~sg~~dg 569 (670)
..-|..++.+.||..+++++.|.+|++|-+.+++|...++.|..+|-|++|.|. |.++++++.|+
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 999999999999999999999999999999999999999999999999999872 35899999999
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 649 (670)
+|++||+.++.++.++.+|...|..++|+|.|++|+++..|++++|||+.+.. ++.+++.|..-|
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---------------cmk~~~ah~hfv 379 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---------------CMKTLEAHEHFV 379 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---------------eeeccCCCccee
Confidence 99999999999999999999999999999999999999999999999999864 466777888899
Q ss_pred EEEEEecCCcEEEEeeCCCC
Q 005913 650 YSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 650 ~~l~fs~~~~~La~gs~dgs 669 (670)
.++.|+.+-.++++|+-|-+
T Consensus 380 t~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 380 TSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred EEEecCCCCceEEeccccce
Confidence 99999999999999998864
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=281.27 Aligned_cols=264 Identities=27% Similarity=0.436 Sum_probs=234.5
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
.++.+|+....... ..+.-...-|..++|+|.|+++|+|+-|....||++..... .+
T Consensus 77 GklIvWDs~TtnK~-haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~----------------------~g 133 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKV-HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA----------------------EG 133 (343)
T ss_pred CeEEEEEcccccce-eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc----------------------cc
Confidence 36667765433322 22222344699999999999999999999999999975211 11
Q ss_pred CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~ 488 (670)
..+..+.+.+|.+-+.|+.|-+ ...|+++|.|.++.+||+++++.+..|.+|.+.|.++.++| +++.|++|+.|++.+
T Consensus 134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 2345677899999999999997 56789999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~ 566 (670)
+||++.+..++.|.+|.++|++++|+|+|.-+++|+.|+++|+||++..+.+..+... ..+|++++||..|++|++|.
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 9999999999999999999999999999999999999999999999999999888633 34799999999999999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
.|..+.+||.-.++.+..+.+|.+.|+++..+|||.-+++|+.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999994
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-35 Score=299.54 Aligned_cols=289 Identities=26% Similarity=0.441 Sum_probs=251.1
Q ss_pred EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee----ecC
Q 005913 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY----QGH 420 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h 420 (670)
...+|...|.+++|+|-.. ++|+|+.|...++|++.......... ...+....+ ...
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q------------------~~lrh~~~~~~~s~~~ 234 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ------------------LVLRHCIREGGKSVPS 234 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh------------------hhhhhhhhhhcccCCc
Confidence 4556889999999999766 99999999999999987411100000 000001111 123
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
+..|++++|+.+|..|++|+.||.+++|+.. +..+.++..|.+||.++.|+..|.||++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4679999999999999999999999999987 777888889999999999999999999999999999999999999999
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
+.-|..+-..|.|- +...+++++.|+.|+++-+....++.++.+|.++|.++.|+|.|.+|++++.|++++||.+....
T Consensus 314 f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 99998887888885 44578899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeCCCcceEEEEEcCCC---------CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 581 CVTPLMGHTSCVWTLAYSCEG---------SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~~g---------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
+...+.+|+..|+.+.|+|.| ..+++++.|++|++||+..+. ++.++..|..||++
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------------~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------------PIHTLMKHQEPVYS 457 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------------eeEeeccCCCceEE
Confidence 999999999999999999965 489999999999999999875 46778899999999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
|+|+|+|+++|+|+.||.
T Consensus 458 vafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGC 475 (524)
T ss_pred EEecCCCcEEEecCCCCe
Confidence 999999999999999984
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=282.47 Aligned_cols=281 Identities=25% Similarity=0.447 Sum_probs=252.3
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|.+.|.++.|+|+|.+||+|+.|..|.+|++... ......+++|+++|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------ceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------CENFWVLKGHSGAVM 94 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc---------------------------ccceeeeccccceeE
Confidence 46788899999999999999999999999999997641 234556779999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
.+.|.+|++.|++++.|.+|+.||+++++++..+++|..-|.++.-+.-|. .+.+|+.||++++||+++..++..+. .
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ 173 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N 173 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c
Confidence 999999999999999999999999999999999999999999998655554 56778899999999999988888775 4
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----Ce
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----GR 580 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----~~ 580 (670)
..+++++.|...+..+++|+-|+.|.+||++.+....++.||..+|+.+..+|+|.++.+-+.|.++++||++- .+
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999974 35
Q ss_pred eeEEeeCCCc----ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 581 CVTPLMGHTS----CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 581 ~~~~~~~h~~----~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
++..+.+|.. ....++|+|+++.+..|+.|..+++||.... ..++.+++|.+.|.++.|+|
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecC
Confidence 5777877642 3457899999999999999999999998774 35788999999999999999
Q ss_pred CCcEEEEeeCCCC
Q 005913 657 RNLLFAAGALSKT 669 (670)
Q Consensus 657 ~~~~La~gs~dgs 669 (670)
...+|.+++.|++
T Consensus 319 ~e~iils~~sdk~ 331 (338)
T KOG0265|consen 319 TEPIILSCSSDKT 331 (338)
T ss_pred CCcEEEEeccCce
Confidence 9999999999876
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-34 Score=292.08 Aligned_cols=281 Identities=36% Similarity=0.664 Sum_probs=254.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++.+|.+.|+|++|+|++++|++|+.+|.|++|++... .....+.+|...+.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~ 55 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR 55 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence 35578899999999999999999999999999998741 23455678889999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
++.|+|+++++++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.|+.+++||+.+++....+..|.
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 135 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence 99999999999999999999999999888888899999999999999998888888889999999999888888888999
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
..+.+++|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.+|.|++||+.+++.+..+
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999888
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
..|...|.++.|+|++.++++++.||.|++|++..+.. +..+..+..+|.+++|++++.+|++++
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC---------------VQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee---------------EEEccccCCcEEEEEECCCCCEEEEec
Confidence 88999999999999998999888899999999986432 334456777899999999999999999
Q ss_pred CCCC
Q 005913 666 LSKT 669 (670)
Q Consensus 666 ~dgs 669 (670)
.||.
T Consensus 281 ~d~~ 284 (289)
T cd00200 281 ADGT 284 (289)
T ss_pred CCCe
Confidence 9875
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=270.08 Aligned_cols=284 Identities=20% Similarity=0.405 Sum_probs=244.5
Q ss_pred HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
.+...+++|.. ...+|..|+....+.|+.+.+.||++.||+| ....||+||+++.
T Consensus 17 ~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~----------------------- 71 (311)
T KOG0315|consen 17 GYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSN----------------------- 71 (311)
T ss_pred cCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCC-----------------------
Confidence 45667888864 4567888888888899999999999999998 5678999999852
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
+......+.+|...|+++.|..+|+++++||+||+++|||++...+.+.|+ |..+|.++..+|+...|++|..+|.
T Consensus 72 ---np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 72 ---NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred ---CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence 233677889999999999999999999999999999999999877666666 7799999999999999999999999
Q ss_pred EEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC------cEEEEEecCCCCeEEEEEcCCC
Q 005913 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~I~~l~~sp~g 559 (670)
|++||+....+...+. .....|.++...|+|.+++.+...|.+++|++-+. .++..+..|.+.+..+.+||++
T Consensus 148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 9999998876555443 44567999999999999999999999999999764 3566788999999999999999
Q ss_pred CEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
++||+++.|.+++||+..+. +.-..+.+|...++.++||.||.+|++|+.|+.+++|++..++.
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~--------------- 292 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE--------------- 292 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce---------------
Confidence 99999999999999999887 55567889999999999999999999999999999999999764
Q ss_pred ccccCCCCCCeEEEEE
Q 005913 639 LKTLPTKSTPVYSLQF 654 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~f 654 (670)
+..+++|..+..|++.
T Consensus 293 v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 293 VRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeecCCcccccEEEEe
Confidence 3455566555555543
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=286.57 Aligned_cols=293 Identities=23% Similarity=0.445 Sum_probs=261.5
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
|-.....+.+|.+-|.|+++.|-..++++|+.|++|+|||+.+ +.....+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltG 191 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTG 191 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecc
Confidence 3333345667888999999999999999999999999999986 345567889
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
|-..|..+++|+-..|+++++.|+.|+.||+...+.++.|.||-..|.+++.+|.-..+++|+.|.++++||+++...+.
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
.+.||...|..+.+.|-...+++|+.|++|++||++.|+....+..|...+.+++.+|....+|+++.|. |+-|++..|
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG 350 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc
Confidence 9999999999999999899999999999999999999999999999999999999999999999998874 999999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
..+..+.+|+.-|.+++.+.|| ++++|+.+|.+.+||.+++...+..+....+ ..+ .....|++.+|...|.
T Consensus 351 ~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp------GSl-~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP------GSL-ESEAGIFASCFDKTGS 422 (460)
T ss_pred chhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccC------Ccc-ccccceeEEeecccCc
Confidence 9999999999999999988765 8999999999999999998654333211111 111 2345799999999999
Q ss_pred EEEEeeCCCC
Q 005913 660 LFAAGALSKT 669 (670)
Q Consensus 660 ~La~gs~dgs 669 (670)
.|++|..|++
T Consensus 423 rlit~eadKt 432 (460)
T KOG0285|consen 423 RLITGEADKT 432 (460)
T ss_pred eEEeccCCcc
Confidence 9999999876
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-34 Score=313.89 Aligned_cols=281 Identities=30% Similarity=0.581 Sum_probs=250.1
Q ss_pred EeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~-~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
++..+ ...|+|+.|+++|+++++++.++.+++|+...... .....+.+|...|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGV 206 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccce
Confidence 34343 67899999999999999999999999999854110 1334447899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
++++|+|++.++++|+.|++|++||+ ..+.+++++++|...|.+++|+|+|+.+++|+.|++|++||++++++++.+.+
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 99999999999999999999999999 55588999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
|...|.+++|++++++|++++.|+.|++||+.++. ++..+.++... +++++|+|+|.++++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999999999 66777777665 999999999999999999999999999999
Q ss_pred eeeEEeeCCCcc---eEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEe
Q 005913 580 RCVTPLMGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFS 655 (670)
Q Consensus 580 ~~~~~~~~h~~~---V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs 655 (670)
..+..+.+|... +.+...++.+.++++|+.|+.|.+|++.+... +..+..| ...|..+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~---------------~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI---------------LQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------hhhhcCCCCCceeccccC
Confidence 999999998864 45556678999999999999999999988542 4455666 7889999999
Q ss_pred cCCcEEEEeeCC
Q 005913 656 RRNLLFAAGALS 667 (670)
Q Consensus 656 ~~~~~La~gs~d 667 (670)
+...++++++.+
T Consensus 432 ~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 432 PTENLIASSSFE 443 (456)
T ss_pred CCcCeeeecCcC
Confidence 999999999853
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-35 Score=311.58 Aligned_cols=237 Identities=33% Similarity=0.580 Sum_probs=221.6
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------------------------ceeEEeeCCCccE
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-------------------------------ANLVCYKGHNYPV 466 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-------------------------------~~~~~~~~h~~~V 466 (670)
..-...++|..|++++.+||.|..|..|++|.+... .....+.||.+||
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 334467999999999999999999999999988621 1124467899999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC
Q 005913 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546 (670)
Q Consensus 467 ~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h 546 (670)
..+.|+|+.++|+++|.|+++|+|++++...+-.+.||..+|.++.|+|.|-|+|+++.|++-++|......+.+.|.+|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~ 626 (670)
-+.|.|+.|+|++.|+++|+.|.++++||..+|..+..|.||.++|.+++|||+|++|++|+.||.|.+||+.++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---- 610 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---- 610 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
++..+.+|.+.|+++.||++|.+||+|+.|.+
T Consensus 611 -----------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 611 -----------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred -----------chhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 46677888999999999999999999999875
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-34 Score=270.29 Aligned_cols=247 Identities=27% Similarity=0.441 Sum_probs=217.4
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
...+.+|.-.|+.+..++||++.++|+.|+.+++||+.+ ....+.+.||...
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHTKD 107 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecCCc
Confidence 456778888899999999999999999999999999985 3567889999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCceeEE
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
|.+++|++|++.+++||.|.+|++|++........... +..-|.|+.|+|+ ..+|++++.|++|++||+++.+....
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 99999999999999999999999999985444333333 3788999999997 78999999999999999999999999
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
+.+|.+.++.++++|||..+++|+.||.+.+||++.++++..+ +|...|.+++|+|+..+|+.+.. ..|+|||+.++.
T Consensus 188 ~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKA 265 (315)
T ss_pred cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccC-CceEEEeccchh
Confidence 9999999999999999999999999999999999999998877 57889999999999877776654 459999999998
Q ss_pred eeEEeeC----C-----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 581 CVTPLMG----H-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 581 ~~~~~~~----h-----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++..+.. . .-...+++|+++|..|++|-.|+.|++|.+..
T Consensus 266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 8876642 1 22356789999999999999999999998753
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=297.25 Aligned_cols=303 Identities=25% Similarity=0.443 Sum_probs=254.4
Q ss_pred CCceeEEEeec-CCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913 339 LPSVSFYTFIN-THNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (670)
Q Consensus 339 ~ps~~~~t~~~-~~~~V~~l~fs~d~~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (670)
+|...+..... ....|..++|+..|.+||.|+.. |.+-||+++. ...+..
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK 345 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK 345 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence 45544433333 34789999999999999998765 8999999875 234455
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
.++|...+++++++|||.++++|+.||.|+|||..++-|..++..|+..|+.++|+..|+.+++.|-||+|+.||+.+..
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccc-CCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 497 ~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
..+++... .-...|++..|.|..+++|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|+|..|++|+.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 99998754 34578999999999999999886 69999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc----cCCccccc-ccccCCCCCCe
Q 005913 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK----SGTNRLRS-LKTLPTKSTPV 649 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~V 649 (670)
|+-......+--.+.+.+..++|+|+|..|++++.||.|.+||+..+......+.. .+....+. .+.-..+..+.
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 99755433333356778999999999999999999999999999887665444321 12111111 22233455679
Q ss_pred EEEEEecCCcEEEEeeCCCC
Q 005913 650 YSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 650 ~~l~fs~~~~~La~gs~dgs 669 (670)
+.+++|+||.++.+|+...+
T Consensus 586 tti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 586 TTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEEEcCCCCEEEecCCccc
Confidence 99999999999999987654
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=262.63 Aligned_cols=263 Identities=22% Similarity=0.368 Sum_probs=232.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (670)
Q Consensus 363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D 442 (670)
.-+||+++.|-+||+|...+ +...+++....+.|+.+...|+++.|++++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~t----------------------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~- 60 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT----------------------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN- 60 (311)
T ss_pred ceEEEeccCcceeeeeehhc----------------------------CeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence 45789999999999999875 4456666767789999999999999999886
Q ss_pred CeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913 443 TTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (670)
Q Consensus 443 g~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 520 (670)
-.||+||++++. ++..|.+|+..|..+.|..+|+.+++||.||+++|||++...+.+.+. |.++|+++..||+...|
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL 139 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence 469999999875 488999999999999999999999999999999999999987777776 66999999999999999
Q ss_pred EEEEcCCcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC------eeeEEeeCCCcceE
Q 005913 521 ATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG------RCVTPLMGHTSCVW 593 (670)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~------~~~~~~~~h~~~V~ 593 (670)
++|..+|.|++||+.+..+...+... ..+|.++...|||.+|+.+...|..++|++-+. .++..++.|.+-+.
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 99999999999999988777666543 457999999999999999999999999999764 45667889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+.+||++++|+++|+|.+++||+.+..- ..-..+..|...+..++||.+|.+|++|+.|+.
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~--------------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFF--------------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCce--------------eeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 99999999999999999999999988751 123456788889999999999999999999864
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=290.36 Aligned_cols=263 Identities=24% Similarity=0.455 Sum_probs=232.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+-||+...=... +....|...|+++.||++|.++++|..+|.|++|+.+-
T Consensus 117 SGEFtLWNg~~fnFE-tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-------------------------- 169 (464)
T KOG0284|consen 117 SGEFTLWNGTSFNFE-TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-------------------------- 169 (464)
T ss_pred cccEEEecCceeeHH-HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--------------------------
Confidence 446667776321111 12356888999999999999999999999999999652
Q ss_pred CCccceeeeecC-ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913 409 GRKRSYTLYQGH-SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (670)
Q Consensus 409 ~~~~~~~~~~~h-~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v 487 (670)
..+....+| ...|.+++|+|+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..|
T Consensus 170 ---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 170 ---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred ---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence 223334444 4999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 005913 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~ 566 (670)
++||.+++.++.++.+|...|..+.|+|++++|++++.|..++++|+++.+.++.+++|...+++++|+| ...+|.+|+
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 566888999
Q ss_pred CCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 567 EDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.||.|..|.+...+++..+. +|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 99999999998667766654 79999999999999999999999999999986543
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-32 Score=319.78 Aligned_cols=298 Identities=17% Similarity=0.304 Sum_probs=241.8
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.+|.+.|++++|+|+|++||+|+.|+.|+||++........ ........+ .+...|.+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--------------------~~~~~~~~~-~~~~~v~~ 537 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--------------------DIHYPVVEL-ASRSKLSG 537 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--------------------ccccceEEe-cccCceee
Confidence 345788899999999999999999999999999763100000 000011122 23468999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 427 l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
++|++. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus 538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 999874 68999999999999999999999999999999999999997 7899999999999999999999888888755
Q ss_pred CCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----
Q 005913 505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS---- 578 (670)
Q Consensus 505 ~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~---- 578 (670)
..|.++.|+ +++++|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|+.|++||+..
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 689999995 579999999999999999998876 567788999999999997 688999999999999999974
Q ss_pred --CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 579 --GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 579 --~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
+.++..+.+|...+..++|++++.+|++|+.||.|++|+................ ... -.....+...|.+++|+|
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~-~~~-~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID-PVS-GLEVDDASQFISSVCWRG 773 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCC-ccc-ccccCCCCcEEEEEEEcC
Confidence 3577889999999999999999999999999999999998765432211100000 000 011234556799999999
Q ss_pred CCcEEEEeeCCCC
Q 005913 657 RNLLFAAGALSKT 669 (670)
Q Consensus 657 ~~~~La~gs~dgs 669 (670)
++.+|++|+.+|+
T Consensus 774 ~~~~lva~~~dG~ 786 (793)
T PLN00181 774 QSSTLVAANSTGN 786 (793)
T ss_pred CCCeEEEecCCCc
Confidence 9999999999986
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=258.38 Aligned_cols=281 Identities=23% Similarity=0.373 Sum_probs=248.7
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913 339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (670)
Q Consensus 339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (670)
+|.....++..+.+.|.++.|+-||+|.++++.|.+|++|+... ...++++.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs 56 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS 56 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence 45555667788899999999999999999999999999999653 45778899
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC--Cc
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ 496 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~--~~ 496 (670)
+|...|..++.+.|+..+++|+.|..|.+||+.+++.+..+.+|...|..+.|+.+...+++|+.|.++++||.+. .+
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874 57
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
|++++......|.++.. .+..|++|+.||++|.||++.|+...-+.+ .+|+|+.|+++|++.++++.|+++++.|-
T Consensus 137 PiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred ccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence 88888888889999887 567899999999999999999988776655 57999999999999999999999999999
Q ss_pred CCCeeeEEeeCCCcceE--EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC-eEEEE
Q 005913 577 ASGRCVTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP-VYSLQ 653 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~--sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-V~~l~ 653 (670)
.+|+.++.+.+|...=+ .++++.....+++|+.||.|.+||+..... +..++.+..+ |.+++
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~---------------~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ---------------ISKLSVVSTVIVTDLS 277 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee---------------eeeeccCCceeEEeee
Confidence 99999999999986544 456777778999999999999999988643 4556666666 89999
Q ss_pred EecCCcEEEEeeC
Q 005913 654 FSRRNLLFAAGAL 666 (670)
Q Consensus 654 fs~~~~~La~gs~ 666 (670)
++|.-..+.+++.
T Consensus 278 ~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 278 CHPTMDDFITATG 290 (307)
T ss_pred cccCccceeEecC
Confidence 9998766665544
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=289.72 Aligned_cols=277 Identities=24% Similarity=0.437 Sum_probs=247.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
....|+|++|++..++||+|...|...+|.+.. ...+..+.-...+|..++|
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----------------------------f~lih~LSis~~~I~t~~~ 315 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----------------------------FNLIHSLSISDQKILTVSF 315 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCC----------------------------ceEEEEeecccceeeEEEe
Confidence 347899999999999999999999999999875 2244445555678999999
Q ss_pred cCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913 430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 430 sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v 508 (670)
+..|++|+.|+. -|.+-||++.+...+...++|...+.+++++|||+++|+|+.||.|++||...+-++.+|..|.+.|
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 999999998875 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC-eEEEEeCCCCeeeEEee
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVTPLM 586 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg-~I~iwDl~~~~~~~~~~ 586 (670)
+.+.|+..|+.+++.+-||+||.||+...++.++|.... ....|++..|.|..+.+|+.|. .|.+|++.+|+.+-.+.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 999999999999999999999999999999999997643 3578899999999999998876 59999999999999999
Q ss_pred CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
||.++|.+++|+|++..|++||.|.+|++||+-.... .+.++ .....|..++|+|+|.-||+++.
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------------~vEtl-~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------------TVETL-EIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--------------eeeeE-eeccceeEEEEcCCCCeEEEEEe
Confidence 9999999999999999999999999999999976532 12222 23457999999999999999999
Q ss_pred CCC
Q 005913 667 SKT 669 (670)
Q Consensus 667 dgs 669 (670)
||.
T Consensus 541 dgq 543 (893)
T KOG0291|consen 541 DGQ 543 (893)
T ss_pred cce
Confidence 873
No 28
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=298.58 Aligned_cols=296 Identities=26% Similarity=0.416 Sum_probs=264.9
Q ss_pred ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005913 294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS 373 (670)
Q Consensus 294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg 373 (670)
.+..+.++.++|.+..++++..++|...+..+..+...+++|+.....+....-++ .+.|+++.|+++|++||+|..+|
T Consensus 161 ~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 161 IPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred ccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCC
Confidence 35567899999999999999999999888888899999999999888776665555 78899999999999999999999
Q ss_pred cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec-CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913 374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (670)
Q Consensus 374 ~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~ 452 (670)
.|.|||.... +....+.+ |...|-+++|+ +..+.+|+.|+.|..+|++.
T Consensus 240 ~v~iwD~~~~----------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 240 TVQIWDVKEQ----------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred eEEEEehhhc----------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 9999998752 23334445 99999999999 77899999999999999998
Q ss_pred CceeEE-eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEE--EcCCc
Q 005913 453 NANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKT 528 (670)
Q Consensus 453 ~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tg--s~dg~ 528 (670)
.+.... +.+|...|+.+.|++++.++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ..+.||+| +.|++
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 876655 889999999999999999999999999999999998899999999999999999999 45678875 47999
Q ss_pred EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE--EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE
Q 005913 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606 (670)
Q Consensus 529 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s 606 (670)
|++||+.+|..+.... ..+.|.++.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus 370 i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 9999999999998775 5578999999999887776 456789999999999999999999999999999999999999
Q ss_pred EECCCcEEEEeCCCC
Q 005913 607 GSADCTVKLWDVTTS 621 (670)
Q Consensus 607 gs~Dg~I~iwd~~~~ 621 (670)
|+.|.++++|++...
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999999875
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=256.73 Aligned_cols=288 Identities=23% Similarity=0.418 Sum_probs=239.6
Q ss_pred eEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
...++.+|.+.+..++|+|- |..||+|+.|..|+||++..... -.-....-.+|+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------------~~ck~vld~~hk 61 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------------WTCKTVLDDGHK 61 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------------EEEEEeccccch
Confidence 34567788889999999998 89999999999999999873100 001112234799
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC---Cc
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---IQ 496 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~---~~ 496 (670)
..|.+++|+|.|++|+++|.|.++.||.-.. .+++..+.||...|.+++|+++|.+||+++.|+.|-||.+.. ..
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 9999999999999999999999999998653 467889999999999999999999999999999999999874 35
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
+...+.+|...|..+.|||....|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++.|++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 677889999999999999999999999999999999866 34689999999999999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccc-cccCCCCCCeEEE
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL-KTLPTKSTPVYSL 652 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l 652 (670)
|-..+.-. ..|+..++.+.|. ...|++++.|+.|++|.-...... ..+.++ ..-..|...|+++
T Consensus 222 w~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~---------p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 222 WRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE---------PSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred eeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC---------chHHHHHhhhcccccccceE
Confidence 98663221 2377899999998 558999999999999987643111 111222 2345677799999
Q ss_pred EEecC-CcEEEEeeCCCC
Q 005913 653 QFSRR-NLLFAAGALSKT 669 (670)
Q Consensus 653 ~fs~~-~~~La~gs~dgs 669 (670)
+|.|. ..+|++|+.||.
T Consensus 287 ~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGI 304 (312)
T ss_pred EEcCCCCCceeecCCCce
Confidence 99994 568899999985
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=275.30 Aligned_cols=247 Identities=33% Similarity=0.573 Sum_probs=232.9
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.++.+|.++|..++|+..|++||+++.|=.+++||..+. ....+.+.+|...|
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------~~c~ks~~gh~h~v 196 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------FRCIKSLIGHEHGV 196 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------HHHHHHhcCcccce
Confidence 356788889999999999999999999999999998741 24566778999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
.+++|-|.|+++++++.|.+|+.|++.++-++.++.+|..-|..++.+.||..+++++.|.++++|-+.++++...+..|
T Consensus 197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h 276 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH 276 (406)
T ss_pred eeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred CCCeeEEEEcCC---------------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 505 LSDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 505 ~~~v~~v~~~p~---------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
.-+|.|++|-|. +.++++++.|++|++||+.++.|+.++.+|...|..++|+|.|+||+++.+|+
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence 999999999762 25899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
++++||+.++++++.+..|...|++++|+.+..++++|+-|.++++|..
T Consensus 357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999974
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=278.58 Aligned_cols=270 Identities=28% Similarity=0.559 Sum_probs=232.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
...+|.|+.+. ...+++|..|.+|+|||.+. ....+.+.||++.|.|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy 245 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY 245 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence 45679999985 55799999999999999875 3466778999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecccCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS 506 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~~ 506 (670)
. .+.+++||.|.+|++||+++++++.++-+|...|..+.|+ +.++++++.|+++.+||+..... .+.+.||..
T Consensus 246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 7 6699999999999999999999999999999999999997 45899999999999999987653 356779999
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.|+.+.|+ .+|+++++.|.+|++|++.++.+++++.+|...|-|+.+. |+++++|+.|.+|++||+..|.++..+.
T Consensus 322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh
Confidence 99999984 5699999999999999999999999999999999998875 8999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
||..-|.++.|. ...+++|+.||+|+|||+..+..... ...--++.++..|.+.|+.+.|... .+++++.
T Consensus 398 GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra------~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssH 467 (499)
T KOG0281|consen 398 GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA------PASTLCLRTLVEHSGRVFRLQFDEF--QIISSSH 467 (499)
T ss_pred chHHhhhheeec--CceeeeccccceEEEEecccccCCcc------cccchHHHhhhhccceeEEEeecce--EEEeccC
Confidence 999999999995 66899999999999999988654211 1112345667778889999998643 3444444
Q ss_pred C
Q 005913 667 S 667 (670)
Q Consensus 667 d 667 (670)
|
T Consensus 468 d 468 (499)
T KOG0281|consen 468 D 468 (499)
T ss_pred C
Confidence 4
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=278.22 Aligned_cols=292 Identities=22% Similarity=0.365 Sum_probs=250.8
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913 336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (670)
Q Consensus 336 ~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (670)
...+|+....++..|.+.|+-+.||++|++||+++.|.+..||.+... ...+...
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~ 263 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKK 263 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeee
Confidence 345677777788999999999999999999999999999999997641 2245678
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
++.+|..+|..+.||||.++|++|+.|..+.+||+.++.....|.. +...+.+++|.|||..|++|+.|+++..||++.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 8999999999999999999999999999999999999998887763 468899999999999999999999999999975
Q ss_pred CceeEEeccc-CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 495 IQPLRIMAGH-LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 495 ~~~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
.. .....+- ...|.+++..+||+++++.+.|..|++++..+........ ...+|+++++|.+|+++++.-.+..|++
T Consensus 344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 43 3333322 2458999999999999999999999999988776665444 4578999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCCCc--ceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 574 WDLASGRCVTPLMGHTS--CVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~--~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
||+...+.+..+.||.. .|..-+|.- +..++++||.|+.|+||+..++. ++..+++|...|.
T Consensus 422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------------ll~~LsGHs~~vN 486 (519)
T KOG0293|consen 422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------------LLAVLSGHSKTVN 486 (519)
T ss_pred eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------------eeEeecCCcceee
Confidence 99998888999999974 344555654 55899999999999999998874 5778899999999
Q ss_pred EEEEecCC-cEEEEeeCCCC
Q 005913 651 SLQFSRRN-LLFAAGALSKT 669 (670)
Q Consensus 651 ~l~fs~~~-~~La~gs~dgs 669 (670)
+|+|+|.+ .++|+|++||+
T Consensus 487 cVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGT 506 (519)
T ss_pred EEecCCCCHHHhhccCCCCe
Confidence 99999976 67899999997
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=265.52 Aligned_cols=280 Identities=21% Similarity=0.303 Sum_probs=243.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+|..|...|.+++.+|+.+++|+|+.|-.-.||++.+ ......+.+|...|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV 109 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV 109 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence 47899999999999999999999999999999999875 23556788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+++.|+.+|.+||+|..+|.|+||...++.....+......|.=+.|+|.++.|+.|+.||.+-+|.+.+....+.+.||
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 99999999999999999999999999999888877655566777899999999999999999999999998889999999
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---------------------------------------
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------------------------------------- 545 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------------------------------------- 545 (670)
..+++|-.|.|+|+.+++|..||+|++||+.+++++..+..
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 99999999999999999999999999999999987765430
Q ss_pred ------------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913 546 ------------HRSMILSLAMSP---DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 546 ------------h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
+...+.|+.+.| .-.+.|+|+-||+|.|||+.+.+....+ .|..+|+.+.|-+ ..+|++++.|
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccC
Confidence 111122223222 3346788999999999999887665544 5888899999998 7899999999
Q ss_pred CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 611 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
|.|+.||.+++. ++.++.+|.-+|.+++.+|+.++++++|.|++
T Consensus 348 g~v~~wDaRtG~---------------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 348 GKVRQWDARTGQ---------------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ceEEeeeccccc---------------eEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 999999999974 46788999999999999999999999999975
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=284.74 Aligned_cols=288 Identities=22% Similarity=0.376 Sum_probs=253.5
Q ss_pred CCceeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 339 LPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 339 ~ps~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
+|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++-. ....++++
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf 254 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTF 254 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehhh
Confidence 46666788999999999999999 899999999999999999864 24578899
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCc
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~ 496 (670)
.||..+|.+++|+++|..++++|.|++|++||+++|+++..+.. ...+.|+.|.|++ +.|++|+.|+.|+.||+++++
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 99999999999999999999999999999999999999998874 5578999999988 889999999999999999999
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
.++.+..|.+.|..+.|-++|.++++.+.|++++||+.+.+-.+.... .+.....|+..+|++.++++-+.|+.|.++.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 999999999999999999999999999999999999998876654432 2334567899999999999999999999999
Q ss_pred CCCC---eeeEEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 576 LASG---RCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 576 l~~~---~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
+... ..-+.+.+|. +.-..+.|||||.+|++|+.||.+.+||..+.. ++..+..|..++.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------------l~~~lkah~~~ci 478 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------------LVSKLKAHDQPCI 478 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------------hhhccccCCcceE
Confidence 7543 2334567886 455678999999999999999999999998853 5678889999999
Q ss_pred EEEEecCC-cEEEEeeCCCC
Q 005913 651 SLQFSRRN-LLFAAGALSKT 669 (670)
Q Consensus 651 ~l~fs~~~-~~La~gs~dgs 669 (670)
.+.|+|.. ..+|+++.+|-
T Consensus 479 ~v~wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGL 498 (503)
T ss_pred EEEecCCCcceeEecccCce
Confidence 99999975 57888888884
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=289.47 Aligned_cols=280 Identities=24% Similarity=0.423 Sum_probs=249.6
Q ss_pred EeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~f-s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+.+.++.|..++| .|+.++||+++..+.+|+|++.+. ....+.||+..|
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-----------------------------~c~ii~GH~e~v 368 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-----------------------------YCQIIPGHTEAV 368 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC-----------------------------ceEEEeCchhhe
Confidence 35677888998887 578899999999999999987752 233788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCce--
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP-- 497 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~-- 497 (670)
.++....+|.+|+|||.|.++++|.++.+. ++....+|+..|.+++++.. ..+|+++|.|+++++|++...+.
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 999966678899999999999999885433 45567899999999999774 46799999999999999976221
Q ss_pred ---e----EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 498 ---L----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 498 ---~----~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
. .....|..+|+|++.+|+...++|||.|++.+||++.......++.+|...|.|+.|+|..+.++|++.|++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 1 123479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
|+||.+.+..|++++.||+..|..+.|-.+|..|+|++.||-|++|+++++. ++.++..|...|+
T Consensus 529 vKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---------------C~~tlD~H~DrvW 593 (775)
T KOG0319|consen 529 VKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---------------CEMTLDAHNDRVW 593 (775)
T ss_pred EEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---------------hhhhhhhccceeE
Confidence 9999999999999999999999999999999999999999999999999975 5678899999999
Q ss_pred EEEEecCCcEEEEeeCCCC
Q 005913 651 SLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~dgs 669 (670)
+++.+|...++++|+.||.
T Consensus 594 aL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 594 ALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred EEeecCccceeEecCCCeE
Confidence 9999999999999999984
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-31 Score=269.81 Aligned_cols=281 Identities=24% Similarity=0.369 Sum_probs=233.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee---eecCc
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGHS 421 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~ 421 (670)
.++..|..-|.|+.|||||.++|+.+.||.|.|||=.+.. .+.. -.+|.
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----------------------------~vg~l~~~~aHk 235 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----------------------------KVGELEDSDAHK 235 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------EEEEecCCCCcc
Confidence 4566777889999999999999999999999999965422 2222 23899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc---cEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
+.|++++|+||+..++++|.|.+++|||+.+..++.++..... .-..+.|- +..|++.+.+|++.+++.....++
T Consensus 236 GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChh
Confidence 9999999999999999999999999999999988887764322 23345565 668999999999999999999999
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-------------------------------E----
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-------------------------------F---- 543 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-------------------------------~---- 543 (670)
..+.||...|+++..+|++.+|++|+.||.|.-||..+|..-+. +
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 99999999999999999999999999999999999865532111 0
Q ss_pred --------------------------------------ecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 544 --------------------------------------IGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 544 --------------------------------------~~h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
..+ .-...+++++|++..++.|+.||.|++|.+.
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~ 473 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS 473 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec
Confidence 001 1124578999999999999999999999998
Q ss_pred CCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913 578 SGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 655 (670)
Q Consensus 578 ~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 655 (670)
.+... .....|.++|++++||||+.+||+|...+.|.+||+.+.... ...+.-|...|.+++|+
T Consensus 474 g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 474 GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWS 539 (603)
T ss_pred CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeC
Confidence 76533 345689999999999999999999999999999999886531 23444578889999999
Q ss_pred cCCcEEEEeeCCCC
Q 005913 656 RRNLLFAAGALSKT 669 (670)
Q Consensus 656 ~~~~~La~gs~dgs 669 (670)
|++.++|+|+.|-+
T Consensus 540 P~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 540 PNNKLVATGSLDTN 553 (603)
T ss_pred CCceEEEeccccce
Confidence 99999999998853
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-32 Score=279.63 Aligned_cols=281 Identities=23% Similarity=0.378 Sum_probs=252.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++..+...|-|+.|+|...+++++-.+|.|.||+.++. ..++.+.-..-||.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq----------------------------tmVksfeV~~~PvR 59 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ----------------------------TMVKSFEVSEVPVR 59 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------eeeeeeeecccchh
Confidence 34557788999999999999999999999999998862 23344555667899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEeccc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGH 504 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~ 504 (670)
+..|-+..+++++|+.|..|++|+.++++.+..+..|..-|.+++.+|...+++++|.|-+|++||.+.. .+.+++.||
T Consensus 60 a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 60 AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred hheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 577899999
Q ss_pred CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEeCCCCee
Q 005913 505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 505 ~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g--~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
..-|.+++|+| |.+.+++++-|++|++|.+.+..+..++.+|...|.|+.+-+-| .+|++|++|..|+|||..+..|
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99999999998 56799999999999999999999999999999999999998854 5999999999999999999999
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
+.++.||...|..+.|+|.-.+++|||.||+|+||+-.+-. +..++.-.-..|.|++-.+.+..+
T Consensus 220 V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---------------lE~tLn~gleRvW~I~~~k~~~~i 284 (794)
T KOG0276|consen 220 VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---------------LEKTLNYGLERVWCIAAHKGDGKI 284 (794)
T ss_pred HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---------------hhhhhhcCCceEEEEeecCCCCeE
Confidence 99999999999999999999999999999999999977643 234455556678888888888888
Q ss_pred EEeeCCCC
Q 005913 662 AAGALSKT 669 (670)
Q Consensus 662 a~gs~dgs 669 (670)
+.|.+.|+
T Consensus 285 ~vG~Deg~ 292 (794)
T KOG0276|consen 285 AVGFDEGS 292 (794)
T ss_pred EEeccCCc
Confidence 88887765
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=267.16 Aligned_cols=242 Identities=26% Similarity=0.501 Sum_probs=226.8
Q ss_pred ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (670)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lw 490 (670)
.+..+.+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+++...++.||-..|..+++|+...|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
|++..+.++.+.||.+.|.|++.||.-..|++|+.|.++|+||+++...+..+.+|..+|.++.+.|-...+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
|++||++.|+.+..+..|...|.+++.+|....+|+++.| .|+-|++..+.. +..+..|...|.
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f---------------~~nlsgh~~iin 364 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF---------------LQNLSGHNAIIN 364 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch---------------hhccccccceee
Confidence 9999999999999999999999999999999999999988 589999988653 445778888999
Q ss_pred EEEEecCCcEEEEeeCCCC
Q 005913 651 SLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~dgs 669 (670)
+++...|| ++++|++.|+
T Consensus 365 tl~~nsD~-v~~~G~dng~ 382 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGS 382 (460)
T ss_pred eeeeccCc-eEEEcCCceE
Confidence 99999888 5666777664
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=291.86 Aligned_cols=250 Identities=32% Similarity=0.615 Sum_probs=228.8
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
...++.+|...|++++|+||++++++|+.|++|+|||+.. ....++++.+|..
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------~~~~~~~l~gH~~ 247 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------DGRNLKTLKGHST 247 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---------------------------CCeEEEEecCCCC
Confidence 3445577889999999999999999999999999999842 1356788899999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRI 500 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~ 500 (670)
.|++++|+|+++++++|+.|++|+|||+++++++..+.+|..+|.+++|++++++|++++.|+.|++||+.++. +...
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 5677
Q ss_pred ecccCCC--eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC---eEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 501 MAGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 501 ~~~~~~~--v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~---I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
+.++... +.++.|+|++.++++++.|+.+++||++.+.++..+.+|... +.+...++.|.++++|+.|+.|.+||
T Consensus 328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 7777666 999999999999999999999999999999999999999874 44455678999999999999999999
Q ss_pred CCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 005913 576 LASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT 619 (670)
Q Consensus 576 l~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~ 619 (670)
+.++..+..+.+| ...+..+.|+|..+++++++ .|+.+++|...
T Consensus 408 ~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 408 SSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999 89999999999999999998 78999999754
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=285.44 Aligned_cols=276 Identities=25% Similarity=0.446 Sum_probs=248.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
....|-.++|+|...++.++-..|.|++||..- ...+..+..|.++|.+++|
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~F 59 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVDF 59 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceeee
Confidence 345789999999999999999999999999863 2355668899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCee
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~ 509 (670)
+|.+.+++||+.|-.|++|+..+.+++.++.||-.-|..+.|++.-.+++++|.|.+|+||+..+.+++..+.||...|.
T Consensus 60 H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 60 HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCC--------C-------------------c--EEEEEecCCCCeEEEEEcCCCC
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~--------~-------------------~--~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
|..|||....++++|-|.+||+||+.. + . ....+.||...|.-++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 999999999999999999999999842 1 0 1235679999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 561 YMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
.|++|++|..|++|.+...+ .+-++++|.+.|.++-|+|..++++|.|.|++|+|||+...+.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--------------- 284 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--------------- 284 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc---------------
Confidence 99999999999999987543 4567889999999999999999999999999999999988653
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+.++.......+.++-+|...++|+|-+.|
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 456666667789999999999999887765
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=283.33 Aligned_cols=254 Identities=27% Similarity=0.528 Sum_probs=227.3
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
+..+.+|.+.|.++....+|-+||+|+.|.++++|.++... .....+....||++.
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------------~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------------SKSLCVAQANGHTNS 413 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------------chhhhhhhhcccccc
Confidence 33567888999999977788999999999999999984311 112345566799999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-----eE----EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 424 VYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----LV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 424 V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~-----~~----~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
|.+++++..+ .+|+++|.|+++++|++...+. .. ....|...|.+++.+|+...|||||.|+++++|+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 9999998765 4899999999999999976221 11 234699999999999999999999999999999999
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
+.....++.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||.|++
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
|++.++.|+.++..|...|++++.++.+.+++||+.||.|.+|.=.+.
T Consensus 574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999999999999999999999999999999999999975543
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5e-30 Score=260.89 Aligned_cols=260 Identities=37% Similarity=0.642 Sum_probs=232.9
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... ....+..+...+.++.|+|+++++++++.+|.|++|++...
T Consensus 30 ~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------------------- 83 (289)
T cd00200 30 DGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------------------------- 83 (289)
T ss_pred CcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------------------------
Confidence 3466677554332 34456677788999999999999999999999999998741
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
.....+..|...|.++.|++++.++++++.||.|++|++.+++....+..|...|.++.|+|++.++++++.|+.++
T Consensus 84 ---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 84 ---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 23445668888999999999988999888899999999998888888889999999999999999998888899999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
+||+++++.+..+..|...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.|
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999999999999998899999999999999999999999999999999998888899999999999999899988889
Q ss_pred CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
|.|++||+.+++.+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999999999999996
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-30 Score=261.11 Aligned_cols=309 Identities=25% Similarity=0.366 Sum_probs=237.2
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcccccc--CCCC----CCCCCCCccccC-CC-----------
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQG----ENDTTPREDIIG-PN----------- 408 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~~----~~~~~~~~~~~~-~~----------- 408 (670)
+.+|...++-..|||.|-|+|+|...|.||||+........... .+.+ .........+.. ..
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 45666779999999999999999999999999987532211111 0110 001111111110 01
Q ss_pred CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v 487 (670)
..+...-.+.||+..|.++.|-|... .+++|+.|++|.+|.=.-.+-...+..|..-|.|+.|+|||..|++++.||++
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 12234455789999999999999877 58999999999999976666677788899999999999999999999999999
Q ss_pred EEEECCCCceeEEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---------------------
Q 005913 488 RIWSMDRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--------------------- 543 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--------------------- 543 (670)
.+||-.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.++++++
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 999999999999988 89999999999999999999999999999999877665443
Q ss_pred ----------------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe-eCCCcc---------
Q 005913 544 ----------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSC--------- 591 (670)
Q Consensus 544 ----------------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~-~~h~~~--------- 591 (670)
.+|...|+++..+|++.+|++|+.||.|.-||..+|..-... .+|...
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 389999999999999999999999999999998765322111 112222
Q ss_pred -----------------------------------------------------------------------eEEEEEcCC
Q 005913 592 -----------------------------------------------------------------------VWTLAYSCE 600 (670)
Q Consensus 592 -----------------------------------------------------------------------V~sl~~s~~ 600 (670)
..+++++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 345667777
Q ss_pred CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 601 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 601 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+..++.|+.||.|+||.+...... .......|..+|++++|||++.+||+|...+
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred CCEEEEecccceEEEEEecCCccc-------------ceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 777777777777777777664321 1223456888999999999999999997654
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-31 Score=283.97 Aligned_cols=270 Identities=24% Similarity=0.360 Sum_probs=214.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCC------------------CCC-----------CCCC
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL------------------QGE-----------NDTT 399 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~------------------~~~-----------~~~~ 399 (670)
.|.+.|+|+.||+||+|||+|+.||.|+||.+............ ... ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67889999999999999999999999999998752110000000 000 0000
Q ss_pred -CC--ccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CC
Q 005913 400 -PR--EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG 475 (670)
Q Consensus 400 -~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g 475 (670)
.. .......-....+..+.||.+.|..++||. +++|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 00 000011112456677899999999999995 5689999999999999999999999988 899999999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C------C
Q 005913 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H------R 547 (670)
Q Consensus 476 ~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h------~ 547 (670)
+||++|+-||.||||++...+.+.....+ .-|++++|.|+|++.++|+-+|.+++|+....+.+..+.- | .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999887776665544 7899999999999999999999999999987776654431 1 2
Q ss_pred CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 548 SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 548 ~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..|+.+.|.|. ...+++.+.|..|+|+|.+...++..++++. ..-....|+.||++|++++.|..|+||++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 27999999984 3357778889999999999989998888754 33456789999999999999999999998543
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=7.6e-30 Score=241.15 Aligned_cols=235 Identities=31% Similarity=0.567 Sum_probs=206.4
Q ss_pred ceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC---ceeEEe-eCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913 413 SYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLN---ANLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~---~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v 487 (670)
....+.+|.+.|..++|+|- |..|++|+.|..|++|+...+ .+...+ .+|...|.+++|+|.|++|++||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 55678899999999999998 889999999999999999852 333333 3699999999999999999999999999
Q ss_pred EEEECCC--CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 488 RIWSMDR--IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 488 ~lwd~~~--~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
.||.-.. .+++..+.||.+.|.|++|+++|++||+++.|+.|.||.+..+ .+...+++|...|-.+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9997653 4678899999999999999999999999999999999998744 5788899999999999999999999
Q ss_pred EEEECCCeEEEEeCC---CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccc
Q 005913 563 ASGDEDGTIMMWDLA---SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 639 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~---~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 639 (670)
++++.|.+|++|+-. ...++.++.+|.+.|++++|++.|..|++++.|++|+||.....
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------------------ 227 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------------------ 227 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------------------
Confidence 999999999999866 45789999999999999999999999999999999999986532
Q ss_pred cccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 640 KTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 640 ~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.-..|..+++.+.|. +-.+|+|+.|+
T Consensus 228 -~~~~~sr~~Y~v~W~--~~~IaS~ggD~ 253 (312)
T KOG0645|consen 228 -LSGMHSRALYDVPWD--NGVIASGGGDD 253 (312)
T ss_pred -cchhcccceEeeeec--ccceEeccCCC
Confidence 112466789999999 55778887765
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3e-30 Score=252.97 Aligned_cols=260 Identities=20% Similarity=0.300 Sum_probs=220.1
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
.++.++|..+... ..+.+.+|...|+|+.||.||.+||+|..+|.|+||...+..
T Consensus 85 DD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~------------------------ 139 (399)
T KOG0296|consen 85 DDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG------------------------ 139 (399)
T ss_pred CceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc------------------------
Confidence 4567888776665 566889999999999999999999999999999999988632
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
....+...-..+--+.|+|-+..|+.|+.||.+..|.+......+.+.||+.++++-.|.|+|+.++++..||+|+
T Consensus 140 ----~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 140 ----EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ----eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 2222334456777899999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecc---------------------------------------------------cCCCeeEEEEcC--
Q 005913 489 IWSMDRIQPLRIMAG---------------------------------------------------HLSDVDCVRWHI-- 515 (670)
Q Consensus 489 lwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~v~~~p-- 515 (670)
+|+..+++++..+.+ +...+.|+.+.|
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 999998887765541 011122222222
Q ss_pred -CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEE
Q 005913 516 -NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594 (670)
Q Consensus 516 -~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~s 594 (670)
.=.+.|+|+-||+|.|||+...+... ...|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|...|..
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 22457889999999999987666544 446888999999998 789999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 595 LAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 595 l~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
++++|+.++++|+|.|++.+||++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999874
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2.9e-30 Score=242.63 Aligned_cols=279 Identities=22% Similarity=0.382 Sum_probs=243.4
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.+|...|.+++|+-+|..||+|+.|+++.+|++.... ...-....+|.+.|-.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq 69 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ 69 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence 45667789999999999999999999999999988531 1122345689999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 427 l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
++|+|.. +.+++++.|.+|++||++.++++.........| -+.|+|+|.++++++.|..|.+.|.++.+...... ..
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~ 147 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK 147 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence 9999854 589999999999999999999998887655555 48899999999999999999999999887766554 44
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
..+.-++|+-+++.++..+..|+|.|.....-+++..+..|.....||.|+|+|+++|+|+.|-.+.+||+..--|+..+
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 56788899977777777777899999999999999999999999999999999999999999999999999998899999
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
..+.-+|..++||.+|++||+||.|..|-|=++.++.+..+. ...++-+.|+|+|...+||.++
T Consensus 228 sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----------------~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----------------PCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----------------eccCCceeEEecCCCceeeEEe
Confidence 999999999999999999999999999999999998764322 3567899999999999999998
Q ss_pred CCCC
Q 005913 666 LSKT 669 (670)
Q Consensus 666 ~dgs 669 (670)
.|+.
T Consensus 292 ddk~ 295 (313)
T KOG1407|consen 292 DDKD 295 (313)
T ss_pred cCCC
Confidence 8763
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.5e-32 Score=262.65 Aligned_cols=258 Identities=27% Similarity=0.567 Sum_probs=226.2
Q ss_pred HHHcc-cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcc
Q 005913 325 LEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403 (670)
Q Consensus 325 ~~~~~-~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (670)
+..++ +.+.+|+... -.|.+.+.+|.+.|.|+.|. .+.+++|++|++|+|||+++
T Consensus 211 VSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--------------------- 266 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--------------------- 266 (499)
T ss_pred hcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC---------------------
Confidence 44444 3678887543 34667889999999999996 45999999999999999986
Q ss_pred ccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCCCEEEE
Q 005913 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFAS 480 (670)
Q Consensus 404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s 480 (670)
+..+.++.+|...|..+.|+ ..+++++|.|.+|.+||+..... ...+.||...|..+.|+ .+|+++
T Consensus 267 -------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVs 335 (499)
T KOG0281|consen 267 -------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS 335 (499)
T ss_pred -------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEE
Confidence 45667788999999999998 67999999999999999987653 34577999999999996 559999
Q ss_pred EECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913 481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
++.|++|++|++.+.+.++++.+|...|.|+.+ .++++++|++|.+|++||+..|.+++.+.||..-|.|+.|. .+
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~k 411 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NK 411 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cc
Confidence 999999999999999999999999999999987 78999999999999999999999999999999999999996 67
Q ss_pred EEEEEECCCeEEEEeCCCCe---------eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 561 YMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~---------~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+++|+.||+|++||+.++. ++..+..|++.|..+.| |...+++++.|.+|-|||+..+.+
T Consensus 412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 89999999999999998763 44556679999999999 466899999999999999988654
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=267.48 Aligned_cols=259 Identities=25% Similarity=0.450 Sum_probs=232.6
Q ss_pred cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
+...+++|+-..... ...|.-..-+|.++.|-...+++++|+.|..|+||+.++
T Consensus 33 ynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------- 86 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------- 86 (794)
T ss_pred ecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence 456788887544322 224555667899999999999999999999999999986
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg 485 (670)
...+..+..|+.-|.|++.+|...+++++|.|-+|++||.+. ..+.++|.||..-|.+++|+| |.+.|+++|-|+
T Consensus 87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 457788999999999999999999999999999999999975 467889999999999999999 788999999999
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~ 563 (670)
+|++|.+.+..+..++.+|...|+|+.|-+-| .||++|+.|.+|++||.++..|++++.||...|.++.|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998644 6999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
+|+.||+++||.-.+-+....+.-.-..|++++-.+.++.++.|...|.|.|
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999998888888777789999999998888888888777643
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=255.06 Aligned_cols=286 Identities=21% Similarity=0.297 Sum_probs=246.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
++..+.+-|..|||||++|++|+.||.|.+|+..+.+...-. .......+.-+..+|.|+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci 269 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCI 269 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEE
Confidence 345667899999999999999999999999998764432210 111223355688999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~ 506 (670)
+||.|...|++|+.||.|++|.+.++.|+..+. .|...|+|+.|+.|+..+++++.|.++++--+..++++..+.||.+
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence 999999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
.|+...|.++|++++++++||+|++|+..+..|+.+|.. ...+|.++..-| +...+++|...++|+|.++ .|+.+.
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVr 428 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVR 428 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEe
Confidence 999999999999999999999999999999999998874 345788888777 4568888889999999997 577777
Q ss_pred EeeCC---CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913 584 PLMGH---TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 584 ~~~~h---~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~ 660 (670)
.+... .+...+++.||.|.++.+.+.|+.++.|.+.++.. -.+++.|...|..++-+|...+
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L---------------E~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL---------------ERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce---------------eeeeecccccccccccCcccch
Confidence 77532 35667788999999999999999999999988753 3466677778889999999999
Q ss_pred EEEeeCCCC
Q 005913 661 FAAGALSKT 669 (670)
Q Consensus 661 La~gs~dgs 669 (670)
||+-+.||.
T Consensus 494 lAsYsEDgl 502 (508)
T KOG0275|consen 494 LASYSEDGL 502 (508)
T ss_pred hhhhcccch
Confidence 999888874
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-30 Score=252.54 Aligned_cols=274 Identities=28% Similarity=0.502 Sum_probs=235.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
+-|.+-|.++... +.++++|+.||.++||+..+ .......||+++|.++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v 150 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSV 150 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeee
Confidence 3456678888877 78999999999999999763 5667889999999999
Q ss_pred EEcCCCC---EEEEEeCCCeEEEEeCCCCce----eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-------
Q 005913 428 SFSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------- 493 (670)
Q Consensus 428 ~~sp~~~---~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~------- 493 (670)
+|.-.+. .++++|.|.++++|.++.+.. +...+||..+|-++...++|..|++|+.|.++.+|+..
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence 9865444 599999999999999887654 34456999999999999999999999999999999932
Q ss_pred ------------------CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913 494 ------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (670)
Q Consensus 494 ------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 555 (670)
+..|+..+.||...|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+ ...+.|+..
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~ 308 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISY 308 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeec
Confidence 2346778899999999999987 67899999999999999999999988765 467999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCe---eeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccccccc
Q 005913 556 SPDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631 (670)
Q Consensus 556 sp~g~~l~sg~~dg~I~iwDl~~~~---~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 631 (670)
+|..++|++|+.|..|++||.+++. ...++.+|.+.|.++.|+|. ..+|++|+.||++++||+++..
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------- 379 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------- 379 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------
Confidence 9999999999999999999998763 45678899999999999995 4579999999999999999864
Q ss_pred CCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 632 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 632 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+++.+.+|...|.++.|...+ ++++|+.|.+
T Consensus 380 -----~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~ 411 (423)
T KOG0313|consen 380 -----APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNK 411 (423)
T ss_pred -----CcceeeccCCceEEEEeccCCc-eEEeccCcce
Confidence 2477888999999999998654 6788888764
No 52
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.8e-30 Score=282.21 Aligned_cols=294 Identities=23% Similarity=0.402 Sum_probs=244.3
Q ss_pred EeecCC-CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 346 TFINTH-NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 346 t~~~~~-~~V~~l~fs~d~~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
++.+|+ ..|.+++.+|||..+|+|+ .||.++||+.......... .+ ............|.+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------~~------~~l~k~l~~m~~h~~ 70 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------KN------ENLPKHLCTMDDHDG 70 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----------hh------cccchhheeeccccC
Confidence 345554 4599999999999999999 8999999998742111000 00 002345667788999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
.|+|+.|+|||.+||+||.|+.|.||.... ++++..+.+|...|.+++|+|++.++++++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 999999999999999999999999998762 23567788999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC------CCeEEEEEcCC
Q 005913 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD 558 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~I~~l~~sp~ 558 (670)
++|.+|+..+.+.+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+......+..+- ..+..+.||||
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999999988877777665543 34788999999
Q ss_pred CCEEEEEE----CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC------CC-------C----EEEEEECCCcEEEEe
Q 005913 559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC------EG-------S----LLASGSADCTVKLWD 617 (670)
Q Consensus 559 g~~l~sg~----~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~------~g-------~----~l~sgs~Dg~I~iwd 617 (670)
|.+|++.. .-..+.|.+-.+++.-..+-||.+++.++.|+| .. + .+|+|+.|++|.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 99999853 335688999888888889999999999999998 11 1 789999999999999
Q ss_pred CCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 618 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.....+. +-...-...+|..++|+|||..|.++|.||+
T Consensus 311 T~~~RPl--------------~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 311 TALPRPL--------------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred cCCCCch--------------hhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 8665432 1222334568999999999999999999997
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-30 Score=242.81 Aligned_cols=261 Identities=26% Similarity=0.438 Sum_probs=224.2
Q ss_pred ceecCCC-CCCceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 331 RVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 331 ~~~l~~~-~~ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
++++-.. ..+.+.........+++..++||++ .+.+++++.||+++|||+...
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~------------------------- 93 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP------------------------- 93 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------------------------
Confidence 4444333 4567777777888899999999986 677889999999999996531
Q ss_pred CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~ 486 (670)
..++..++.|...|+++.|++.. ..++++|.|++|++|+......+.++.+|+..|....|+| .+..|+++|.|++
T Consensus 94 --s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 94 --SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred --CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 23567788999999999999855 4678889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMA 563 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~ 563 (670)
+++||++..-....+..|...+.|+.|+. +.+.++||+.|+.||.||+++- .++..+.+|.-.|+.++|||. ...|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999987655555888999999999985 6788999999999999999964 467788999999999999995 45899
Q ss_pred EEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 005913 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~ 618 (670)
+++.|-+++|||...+ ..+.+...|+..|..+.||+ ++.++|+++.|+.+.||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999999854 45566678999999999998 6779999999999999983
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.5e-30 Score=268.83 Aligned_cols=280 Identities=20% Similarity=0.409 Sum_probs=249.4
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
-+++.+|...|.+++||.|...+++| ..+.|+||+..+.. ..+++. .+-
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k----------------------------ciRTi~--~~y 414 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK----------------------------CIRTIT--CGY 414 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc----------------------------eeEEec--ccc
Confidence 47888999999999999999888888 67789999988633 223332 247
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-----Ccee
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPL 498 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-----~~~~ 498 (670)
+.+..|.|.++++++|...|.+.+||+.+...+..++.|.+.||+++.+||+..+++||.|.+|++||..- +...
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999741 1111
Q ss_pred EEec-------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 499 RIMA-------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 499 ~~~~-------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
+.+. .-...|.|++++|||++|+++--|.+|.+|-+.+-+..-.+.||.-||.|+.+|||++.++||+.|..|
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce
Confidence 1111 234789999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
+||-+.-|.|-+.+.+|...|.++.|-|+...+.++|.|+.|+-||-..- ..+..+++|...|+|
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWC 639 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh---------------hhheeeccchheeee
Confidence 99999999999999999999999999999999999999999999997664 357788999999999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
++.+|+|.++++++.|.|
T Consensus 640 Lav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eEEcCCCCeEEeccCCce
Confidence 999999999999999875
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-29 Score=237.23 Aligned_cols=292 Identities=20% Similarity=0.273 Sum_probs=242.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
-+.+|..+++-+.++.+|.+|.+++.|..+.||-... +..+-.+.||++.|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW 56 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence 4678999999999999999999999999999997532 456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-----CCCcEEEEECC-------
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMD------- 493 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-----~dg~v~lwd~~------- 493 (670)
|+..+.+.+.+++|+.|.++++||+.+++++..++. ..+|+.+.|+++|++++.+. ..+.|.++|++
T Consensus 57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred EEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 999999999999999999999999999999999884 67899999999999888775 34789999987
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
...|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++|+ .+..-..|...|+.++++||..++++++.|.+-+
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 456788888899999999999999999999999999999999984 4556678999999999999999999999999999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc-cCCcccccccccCCCCCCeEE
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-SGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~ 651 (670)
+||..+-.+++++. ...+|++.+++|-...++.|+.....-|=-... +..+.+.. -....-..+..+.+|-+||++
T Consensus 216 l~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~--r~GKFEArFyh~i~eEEigrvkGHFGPINs 292 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTST--RAGKFEARFYHLIFEEEIGRVKGHFGPINS 292 (327)
T ss_pred eeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecc--cccchhhhHHHHHHHHHhccccccccCcce
Confidence 99999999998886 446899999999877777776543322211111 11111100 000011335678899999999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
|+|+|+|+..++|+.||.
T Consensus 293 vAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred eEECCCCcccccCCCCce
Confidence 999999999999999984
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-28 Score=268.45 Aligned_cols=257 Identities=18% Similarity=0.282 Sum_probs=206.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|++...++|+..+++++.+.....|+...... ...... ..........+.+|.+.|++++|+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~-------------~G~~~~~~~~l~GH~~~V~~v~fsP 85 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTD-------------YGKLASNPPILLGQEGPIIDVAFNP 85 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceE--Eeeccc-------------cccCCCCCceEeCCCCCEEEEEEcC
Confidence 3567777888877778887888888898654221 100000 0000112234789999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec
Q 005913 432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 432 -~~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
++++|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++.+..+.
T Consensus 86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 7889999999999999999764 3467788999999999999975 699999999999999999999999999
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEE----CCCeEEEEeCC
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDLA 577 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~----~dg~I~iwDl~ 577 (670)
+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||++
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999888765 45678999888887754 47999999998
Q ss_pred CCe-eeEEeeCCC-cceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcc
Q 005913 578 SGR-CVTPLMGHT-SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK 623 (670)
Q Consensus 578 ~~~-~~~~~~~h~-~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~ 623 (670)
+.. ++.....+. ..+....|++++++|++|+ .||.|++||+..+..
T Consensus 246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 754 444333333 4566678999999999888 599999999988654
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=250.59 Aligned_cols=276 Identities=22% Similarity=0.393 Sum_probs=245.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
.+++++...|..+.+++|+.|..+.++|... .+.+..+.||...|+.+.|+|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~ 271 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK 271 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence 3578888888888999999999999999764 456778999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc--CCCee
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD 509 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~--~~~v~ 509 (670)
+...+++++.|..|++|.............|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.++
T Consensus 272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 9999999999999999999988888888999999999999999999999999999999999999888776642 23589
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~ 589 (670)
+.+|||||..|.+|+.||.|++||+.++..+..|.+|.++|..++|+.+|.||+++++|+.|++||++.-+..+++.-..
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777776433
Q ss_pred -cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 590 -SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 590 -~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..|.+++|.+.|.+|+.++.|=.|++++-.+ ..|..+..+..+.+..+++.|....+++++|+.|.
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 4799999999999999997775555554322 34667788888888999999999999999999875
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.1e-28 Score=287.01 Aligned_cols=239 Identities=23% Similarity=0.380 Sum_probs=208.6
Q ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 350 THNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
++..|.+++|++ ++.+||+|+.||.|+|||+.+ ......+.+|.+.|++++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSID 582 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEEE
Confidence 456799999987 478999999999999999874 234556778999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc-eeEEecccC
Q 005913 429 FSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRIMAGHL 505 (670)
Q Consensus 429 ~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~-~~~~~~~~~ 505 (670)
|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|++ +|.+|++|+.||.|++||+++.. ++..+.+|.
T Consensus 583 ~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~ 661 (793)
T PLN00181 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661 (793)
T ss_pred EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC
Confidence 997 7889999999999999999999888888755 5799999954 79999999999999999998765 567788999
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
..|.++.|. ++.+|++++.|++|++||++. +.++..+.+|...+.+++|+|++.+|++|+.||.|++|+....
T Consensus 662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999997 788999999999999999974 3578889999999999999999999999999999999998765
Q ss_pred eeeEEe-------------eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 580 RCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 580 ~~~~~~-------------~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
.++..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 443222 234567999999999999999999999999996
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=255.60 Aligned_cols=275 Identities=23% Similarity=0.364 Sum_probs=230.3
Q ss_pred ecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
...++.|++++|||...+ +|+. ..-.+.||+..+.. ..+.+......|++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~----------------------------~~k~~srFk~~v~s 73 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRS----------------------------VRKTFSRFKDVVYS 73 (487)
T ss_pred ccccCcceeEecCCCCCCceEEe-cccEEEEEecchhh----------------------------hhhhHHhhccceeE
Confidence 455678999999996554 4444 45578999976521 22233445678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
+.|-.||++|++|...|.|+++|+.+...+..+.+|+.||..+.|+| ++..|++|+.|+.+++||+.+......+.+|.
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht 153 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT 153 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence 99999999999999999999999887777888999999999999999 56678889999999999999988766889999
Q ss_pred CCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-ee
Q 005913 506 SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CV 582 (670)
Q Consensus 506 ~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~ 582 (670)
..|.|.+|+|- +..+++|+.||.|++||+++. ..+..+ .|..+|.++.+-|.|..+++++. ..|++||+.+|. .+
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence 99999999985 558899999999999999987 555555 69999999999999999999875 579999999664 44
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 662 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La 662 (670)
..+..|...|+|+.+..++..|++||-|+.|+|||+.+-+. +..+ ...+||.+++.+|+++.++
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv---------------v~s~-~~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV---------------VHSW-KYPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE---------------EEee-ecccceeeEEecCCCceEE
Confidence 55556999999999999999999999999999999766432 2233 4567999999999999999
Q ss_pred EeeCCCC
Q 005913 663 AGALSKT 669 (670)
Q Consensus 663 ~gs~dgs 669 (670)
+|..+|.
T Consensus 296 iGmsnGl 302 (487)
T KOG0310|consen 296 IGMSNGL 302 (487)
T ss_pred Eecccce
Confidence 9999874
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-29 Score=265.42 Aligned_cols=263 Identities=25% Similarity=0.421 Sum_probs=230.6
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
+..+++|+-... .++-.|..|.++|..++|+|++.++++|+.|-.|+||+...
T Consensus 30 sG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-------------------------- 82 (1202)
T KOG0292|consen 30 SGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-------------------------- 82 (1202)
T ss_pred Cceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------------------------
Confidence 346677764332 23446889999999999999999999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
.+...++.||-.-|..+.|++.-.+++|+|.|.||+||++.+..++.++.||+.-|.|.+|+|....++++|-|.+||
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCc-----------------------------eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-
Q 005913 489 IWSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE- 538 (670)
Q Consensus 489 lwd~~~~~-----------------------------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~- 538 (670)
+||+..-+ ....+.||...|+-++|||.-..|++|+.|+.|++|.+..-+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99985210 124567999999999999999999999999999999987543
Q ss_pred -EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 539 -CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 539 -~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
.+-+..+|.+.|+|+-|+|....+++.+.|++|+|||+.....+.+++.....-|.++-+|..++++.|- |+-+.||.
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk 319 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK 319 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE
Confidence 4567789999999999999999999999999999999999999999988888999999999999777665 55566887
Q ss_pred CCCC
Q 005913 618 VTTS 621 (670)
Q Consensus 618 ~~~~ 621 (670)
+...
T Consensus 320 leRE 323 (1202)
T KOG0292|consen 320 LERE 323 (1202)
T ss_pred Eccc
Confidence 7643
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-28 Score=234.11 Aligned_cols=275 Identities=24% Similarity=0.358 Sum_probs=232.5
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
|....+.|+++.|+++|.+|++++.|-+++|||... ....+....+.-.|..
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~ 61 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL 61 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence 334567899999999999999999999999999875 2344555566678888
Q ss_pred EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 427 l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
++|......++.++. |.+||..++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+..
T Consensus 62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~- 140 (311)
T KOG1446|consen 62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL- 140 (311)
T ss_pred EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-
Confidence 899877777777766 88999999999999999999999999999999999999999999999999998777766653
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
..-..++|.|.|-++|++.....|++||++.- .+..+|. +.....+.+.|||||++|+.++..+.+++.|.-+|
T Consensus 141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 33456789999999999988889999999853 4444443 33567899999999999999999999999999999
Q ss_pred eeeEEeeCCCcce---EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEe
Q 005913 580 RCVTPLMGHTSCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFS 655 (670)
Q Consensus 580 ~~~~~~~~h~~~V---~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs 655 (670)
..+..+..+...- -+.+|+||++++++|+.||+|.+|+++++... ..+.+ +.+++.++.|+
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v---------------~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV---------------AVLRGPNGGPVSCVRFN 284 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe---------------eEecCCCCCCccccccC
Confidence 9998888776432 57889999999999999999999999887653 23333 67889999999
Q ss_pred cCCcEEEEeeC
Q 005913 656 RRNLLFAAGAL 666 (670)
Q Consensus 656 ~~~~~La~gs~ 666 (670)
|.-.++|+++.
T Consensus 285 P~~~mf~sa~s 295 (311)
T KOG1446|consen 285 PRYAMFVSASS 295 (311)
T ss_pred CceeeeeecCc
Confidence 99999998874
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.6e-29 Score=249.38 Aligned_cols=302 Identities=24% Similarity=0.390 Sum_probs=247.6
Q ss_pred ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
+..+.....|+-+|+|++++||+++.++++.+|+|.=|++.+.....-. .+...+............ .+|
T Consensus 132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i---------~~~~ev~k~~~~~~k~~r-~~h 201 (479)
T KOG0299|consen 132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYI---------IERDEVLKSHGNPLKESR-KGH 201 (479)
T ss_pred cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccc---------cccchhhhhccCCCCccc-ccc
Confidence 3335566778889999999999999999999999999998764322100 000000000011111111 489
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
...+.+++.|+||++|++|+.|..|.||+.++.+.+..+++|...|.+++|-...+.+++++.|+++++|+++....+.+
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
+.+|.+.|..+....-++.+-+|+.|+++++|++. .....+|.+|.+.+.|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence 99999999999988888888889999999999994 4445568899999999999854 578999999999999999998
Q ss_pred eeEEee-CC-----------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 581 CVTPLM-GH-----------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 581 ~~~~~~-~h-----------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
++.... +| ...|++++..|...++++|+.+|.|++|-+..+-. .+.++..++ -.+-
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls-~~Gf 427 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-----------AINLLYSLS-LVGF 427 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-----------ccceeeecc-cccE
Confidence 887654 22 12789999999999999999999999999988643 224455554 5678
Q ss_pred eEEEEEecCCcEEEEeeC
Q 005913 649 VYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs~ 666 (670)
|++++|+++|..+++|..
T Consensus 428 VNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 428 VNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEEEccCCCEEEEecc
Confidence 999999999998777753
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.3e-30 Score=238.22 Aligned_cols=279 Identities=23% Similarity=0.357 Sum_probs=244.1
Q ss_pred EEeecCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 345 YTFINTHNGLNCASIS---QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs---~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
++-.+|..+|..++|| |+|-+|++++.||.-.+-+=+ .+..+-++.||.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----------------------------tgdwigtfeghk 59 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----------------------------TGDWIGTFEGHK 59 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----------------------------CCCcEEeeeccC
Confidence 3568899999999998 589999999998875443322 234667899999
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-eeEE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRI 500 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-~~~~ 500 (670)
+.|++...+.+...-++++.|-+-++||.-++..+..+. |..-|..++|+.|.++|++|+.+..+|++|+++.+ +...
T Consensus 60 gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 60 GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence 999999999888889999999999999999999988887 88889999999999999999999999999998754 5677
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
+.+|.+.|..+-|....+.|++.+.|++||+||.+++..+..+. ...+|+++.++++|++|.++. .+.|.+||..+-.
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEecccccc
Confidence 88999999999999999999999999999999999999999886 457899999999999887764 5779999999988
Q ss_pred eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~ 660 (670)
.++.+.. ...|.+.+.+|+...+++|+.|+.++.||..++..+. .....|.+||.||.|+|+|.+
T Consensus 217 ~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~--------------~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 217 LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG--------------SYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee--------------ecccCCCCceEEEEECCCCce
Confidence 8887753 3468899999999999999999999999999986431 113688999999999999999
Q ss_pred EEEeeCCCC
Q 005913 661 FAAGALSKT 669 (670)
Q Consensus 661 La~gs~dgs 669 (670)
.|+||.|||
T Consensus 282 yAsGSEDGT 290 (334)
T KOG0278|consen 282 YASGSEDGT 290 (334)
T ss_pred eeccCCCce
Confidence 999999997
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=231.36 Aligned_cols=237 Identities=25% Similarity=0.441 Sum_probs=214.3
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
....+..|.++|..+.|+-+|+|.++|+.|.+|++|+...+.++++|.+|...|.+++.+.|+..|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
++++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++ .++++++......|.++..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999985 46788888888899999887 668999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
++.||++.|+......+ .+|++++|+++++....++-|+++++.|-.+++ ++..+.+|.+.-+
T Consensus 167 vRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------------lL~sYkGhkn~ey 229 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------------LLKSYKGHKNMEY 229 (307)
T ss_pred EEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhH---------------HHHHhccccccee
Confidence 99999999988766655 479999999999999999999999999988875 4566667665544
Q ss_pred --EEEEecCCcEEEEeeCCC
Q 005913 651 --SLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 651 --~l~fs~~~~~La~gs~dg 668 (670)
.++++.....+++|+.||
T Consensus 230 kldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred eeeeeecccceeEEeccCCc
Confidence 446677778888998887
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.6e-30 Score=255.80 Aligned_cols=291 Identities=23% Similarity=0.327 Sum_probs=248.5
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913 336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (670)
Q Consensus 336 ~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (670)
...+|+.+.+.+..|.+.+..+.|-++...|++|+.|..|++|++...+ .....
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~ 213 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIS 213 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhh
Confidence 3467888888889999999999999999999999999999999987522 12445
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~ 495 (670)
.+.|..++|+++.|.+++.++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.++++||+...
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 67778899999999999999999999999999999999999999999999999999987777999999999999999998
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
.+.+.+. ..+.+..|..+ ...+++|..|+.||+||++++.+.+....+. .|+++..+++|..|.+++.|..+.+.|
T Consensus 294 ~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 294 YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID 369 (459)
T ss_pred heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence 8777654 23555566554 5678899999999999999999999887764 899999999999999999999999999
Q ss_pred CCCCeeeEEeeCC----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 576 LASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 576 l~~~~~~~~~~~h----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
+++......+.+. ....+.+.|||++.|+++||.||.|+||++.+++... +....+....|++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~-------------~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK-------------VLSLSTSNAAITS 436 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE-------------EeccCCCCcceEE
Confidence 9999888777642 2447889999999999999999999999999876421 1122233336999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
++|+|.|..|++++.++.
T Consensus 437 ~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKA 454 (459)
T ss_pred EEEcCCCchhhcccCCcc
Confidence 999999999999887753
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=8.5e-29 Score=237.17 Aligned_cols=262 Identities=24% Similarity=0.409 Sum_probs=235.2
Q ss_pred HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
.....+.||+..--.-.+.++.+|.+.|..+.|.+|++.+++++.|.+|+.||..+
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------------ 121 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------------ 121 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------------
Confidence 34567889998777777888889999999999999999999999999999999986
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
++..+.+++|.+-|+++.-+.-|. ++.+++.||++++||+++...++.+. ...+++++.|...+..+.+|+-|+
T Consensus 122 ----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 122 ----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 456677889999999998555554 56689999999999999888888776 366899999999999999999999
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----CcEEEEEecCCC----CeEEEEEcC
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMSP 557 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~----~I~~l~~sp 557 (670)
.|++||++......++.||...|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999999999999999984 456888887754 356788999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 558 ~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
++..+.+|+.|..+++||..+...+..+.+|.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999999999899999999999999999999999999999999998643
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=239.93 Aligned_cols=264 Identities=25% Similarity=0.458 Sum_probs=218.0
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC-CCCCccceeeeecCccC
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~ 423 (670)
.++..|.+.+.|.+||+||.++|+|+.|..|+|.|+...-... .+.+.+.. .......++++..|..+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-----------~~~em~~~~~qa~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-----------KPKEMISGDTQARHPVIRTLYDHVDE 174 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-----------chhhhccCCcccCCceEeehhhccCc
Confidence 3567789999999999999999999999999999987421100 00001111 11224678889999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
|+++.|+|....|++|+.|++|+++|.......+.++ ....+|.++.|+|.|.++++|..-.++++||+++.++...-
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999999999987554333222 35678999999999999999999999999999998776543
Q ss_pred ---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 502 ---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
..|.+.|+++.+++.++..++|+.||.|++||--+++|++++. .|. ..|.+..|..+|+++++.+.|..+++|.+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 3688999999999999999999999999999999999998874 454 46899999999999999999999999999
Q ss_pred CCCeeeEEe-------------------------------------------------eCCCcceEEEEEcCCCCEEEEE
Q 005913 577 ASGRCVTPL-------------------------------------------------MGHTSCVWTLAYSCEGSLLASG 607 (670)
Q Consensus 577 ~~~~~~~~~-------------------------------------------------~~h~~~V~sl~~s~~g~~l~sg 607 (670)
.+++++..+ .+|++.+..+..||.+.-+++|
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence 988877654 2567778888888888889999
Q ss_pred ECCCcEEEEeCC
Q 005913 608 SADCTVKLWDVT 619 (670)
Q Consensus 608 s~Dg~I~iwd~~ 619 (670)
+.|-.+|+|--.
T Consensus 415 sdD~raRFWyrr 426 (430)
T KOG0640|consen 415 SDDFRARFWYRR 426 (430)
T ss_pred cccceeeeeeec
Confidence 999999999643
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-27 Score=218.55 Aligned_cols=305 Identities=22% Similarity=0.366 Sum_probs=243.6
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
|.....+.+.....|.+++|+|.|.+.|+|+...+.+|............ . +.... ......+..+.
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~--h--ea~~~---------pp~v~~kr~kh 87 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA--H--EAAKQ---------PPSVLCKRNKH 87 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccc--c--ccccC---------CCeEEeeeccc
Confidence 33445566777788999999999999999999999999876531111000 0 00000 00123445567
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeeCCCccEeEEEEec----CCCEEEEEE-CCCcEEE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARI 489 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~~~V~~l~~sp----~g~~l~s~s-~dg~v~l 489 (670)
|.+.|+|.+|+|+|.+|++|+.|.+|++.-.+...+ -..+..|.+.|.+++|-. .|..+++++ .|..|++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999999999999999999999999999987765443 245677999999999965 355677765 5778888
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C-----CCCeEEEEEcCCCCEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H-----RSMILSLAMSPDGRYM 562 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~I~~l~~sp~g~~l 562 (670)
-|..+++....+.+|.+.|.++ ++-++-.+++|+.|.+||+||++-..+++++.. | ...|.+++..|.|++|
T Consensus 168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 8999999999999999999886 345788999999999999999999999987642 2 2569999999999999
Q ss_pred EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
++|..|....+||++.++.++.+..|+..|.++.|||...++.+|+.|..|++-|+...-.. .-.+...
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----------el~~~vv 315 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----------ELPIMVV 315 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----------cCceEEE
Confidence 99999999999999999999999999999999999999999999999999999998763210 0122334
Q ss_pred CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 643 PTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 643 ~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..|...+..+.|+|...-+.+.+.|.+
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcce
Confidence 457777889999999999999888875
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=259.93 Aligned_cols=261 Identities=25% Similarity=0.396 Sum_probs=227.2
Q ss_pred cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
+...++||+.-.-..|+.||.+|..+|..++|+++|..+.+++.|++|++||+.++..
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~---------------------- 292 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV---------------------- 292 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE----------------------
Confidence 4457888888777889999999999999999999999999999999999999987322
Q ss_pred CCCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
...+ .-...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.|..|-++|..+.|-++|.+|++.+.|++
T Consensus 293 ------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 293 ------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred ------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 1111 123568999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCC--CeEEEEEcCCCC
Q 005913 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRS--MILSLAMSPDGR 560 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~--~I~~l~~sp~g~ 560 (670)
++||+.+.+.++..+. .+.-...|+..+|+++++++-+.|..|.++.+... .....|.+|.. .-..+.|||||+
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 9999999887776544 23345778999999999999999999999987532 23345777763 466789999999
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEe
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWD 617 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd 617 (670)
+|++|+.||.+.+||.++.+.+..+..|.+++..+.|+|. ...+|+|+.||.|++|+
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999994 56899999999999996
No 70
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=262.10 Aligned_cols=247 Identities=19% Similarity=0.329 Sum_probs=195.5
Q ss_pred EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 005913 369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL 447 (670)
Q Consensus 369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~l 447 (670)
|+.++.|++|+... ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus 50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 56778899998653 2345678899999999999997 789999999999999
Q ss_pred EeCCCCc--------eeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC
Q 005913 448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN 518 (670)
Q Consensus 448 wd~~~~~--------~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 518 (670)
||+.++. .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|+
T Consensus 102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~ 180 (568)
T PTZ00420 102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN 180 (568)
T ss_pred EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence 9997642 34467889999999999998876 5789999999999999988777765 567899999999999
Q ss_pred EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEE-----EEcCCCCEEEEEECCC----eEEEEeCCC-CeeeEEeeC-
Q 005913 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMG- 587 (670)
Q Consensus 519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l-----~~sp~g~~l~sg~~dg----~I~iwDl~~-~~~~~~~~~- 587 (670)
+|++++.|+.|++||+++++.+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||+++ +.++..+..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld 260 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID 260 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence 99999999999999999999999999998765432 3568999999988774 799999995 566655433
Q ss_pred -CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 588 -HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 588 -h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
+.+.+......++|.++++|+.|++|++|++..+.. ..+..+. +..|+.+++|.|..
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-------------~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-------------RKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-------------Eeecccc-cCCCccceEEcccc
Confidence 334444444456788999999999999999976531 1222332 44566677777653
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-29 Score=232.07 Aligned_cols=236 Identities=26% Similarity=0.395 Sum_probs=205.3
Q ss_pred CccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc
Q 005913 420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 420 h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
-...++.++|+++. +.+++++.||+++|||+.. ..++..++.|...|.++.|++ ++..++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45789999999976 4788999999999999653 346888999999999999999 66778999999999999999999
Q ss_pred eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 005913 497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW 574 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iw 574 (670)
.++++.+|.+-|...+|+| ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 468999999999999999986544444889999999999998 66789999999999999
Q ss_pred eCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913 575 DLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 575 Dl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
|+++- .++..+.+|.-.|..+.|||. ..+|++++.|-+++|||..... ..+.++..|..-|..+
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGL 284 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEecc
Confidence 99875 577888999999999999995 5689999999999999988654 2355667788889999
Q ss_pred EEec-CCcEEEEeeCCCC
Q 005913 653 QFSR-RNLLFAAGALSKT 669 (670)
Q Consensus 653 ~fs~-~~~~La~gs~dgs 669 (670)
.||+ +...+|..+.|++
T Consensus 285 Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDEL 302 (311)
T ss_pred ccccccCceeeecccccc
Confidence 9998 4678888888864
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-28 Score=241.58 Aligned_cols=264 Identities=24% Similarity=0.460 Sum_probs=221.4
Q ss_pred cccceecCCCCCCceeEEEeecCCCCEEEEEEcC-C--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccc
Q 005913 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~-d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (670)
+....++|... ..+.++..+|.++|.+++|-- + ...+++++.|.++++|.++....
T Consensus 123 YDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~------------------- 181 (423)
T KOG0313|consen 123 YDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN------------------- 181 (423)
T ss_pred cCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-------------------
Confidence 34455666544 445567899999999888743 2 34699999999999999875221
Q ss_pred cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCceeEEe
Q 005913 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY 459 (670)
Q Consensus 405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-------------------------~~~~~~~~ 459 (670)
.........||.++|-+++..++|..+++||.|.+|.||+.. +..++..+
T Consensus 182 -----~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 182 -----KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred -----hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 112333445999999999999999999999999999999932 12346778
Q ss_pred eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-
Q 005913 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE- 538 (670)
Q Consensus 460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~- 538 (670)
.||..+|.++.|++ ...+++++.|.+|+.||+.++.....+.+. ..+.|+..+|..++|++|+.|..||+||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 89999999999998 668999999999999999999988887754 679999999999999999999999999999764
Q ss_pred --EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 539 --CVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 539 --~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
....|.+|.+.|.++.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..|++||.|++|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 45678899999999999995 4578899999999999999887 999999999999999997 567899999999999
Q ss_pred EEeCCC
Q 005913 615 LWDVTT 620 (670)
Q Consensus 615 iwd~~~ 620 (670)
|+.-..
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 987543
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.1e-28 Score=263.83 Aligned_cols=266 Identities=29% Similarity=0.526 Sum_probs=233.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee-eecCccCEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~ 428 (670)
+...+.|..|. ..++++|+.+++|++|+... ...... +.||.+.|.+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA 256 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence 45679999998 66899999999999999875 223344 889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v 508 (670)
+..-+..|++|+.|.++++||..++.+...+.+|...|.++... +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence 99878899999999999999999999999999999999888775 5578889999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeC
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~ 587 (670)
.|+..+ +.++++|+.|++|++||+.+++++..+.+|.+.|+++.+.+. ..+++|+.|+.|++||+.+. +++..+.+
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 999987 889999999999999999999999999999999999988865 89999999999999999999 99999999
Q ss_pred CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEEEeeC
Q 005913 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La~gs~ 666 (670)
|.+-|.++.+ .+++|++++.||+|++||...++. +.++.+ +...|..+++. ...+++++.
T Consensus 412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~---------------~~~~~~~~~~~v~~l~~~--~~~il~s~~ 472 (537)
T KOG0274|consen 412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC---------------LRTLEGRHVGGVSALALG--KEEILCSSD 472 (537)
T ss_pred Cccccccccc--ccceeEeccccccEEEeecccCce---------------eeeeccCCcccEEEeecC--cceEEEEec
Confidence 9998877665 578999999999999999988764 334444 56778888877 345666666
Q ss_pred CCC
Q 005913 667 SKT 669 (670)
Q Consensus 667 dgs 669 (670)
+|+
T Consensus 473 ~~~ 475 (537)
T KOG0274|consen 473 DGS 475 (537)
T ss_pred CCe
Confidence 664
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=247.07 Aligned_cols=292 Identities=22% Similarity=0.321 Sum_probs=228.4
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-
Q 005913 339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY- 417 (670)
Q Consensus 339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 417 (670)
+|..+...+.++...|+++++.|.|..|++|+-|-+|++||+..+.. ..+..+.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda------------------------s~~~fr~l~ 210 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA------------------------SMRSFRQLQ 210 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc------------------------cchhhhccC
Confidence 45566677888888999999999999999999999999999986321 11122222
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE------------EeeCCCccEeEEEEecC-CCEEEEEECC
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV------------CYKGHNYPVWDVQFNPQ-GHYFASSSHD 484 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~------------~~~~h~~~V~~l~~sp~-g~~l~s~s~d 484 (670)
......|.++.|++.|..|++.+.....+|+|-....... ..+||...++|.+|+|. ...|++++.|
T Consensus 211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D 290 (641)
T KOG0772|consen 211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD 290 (641)
T ss_pred cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence 2344679999999999999999888999999977554433 23579999999999995 4579999999
Q ss_pred CcEEEEECCCCce-eEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc---EEEEEecCCC--CeEEE
Q 005913 485 RTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRS--MILSL 553 (670)
Q Consensus 485 g~v~lwd~~~~~~-~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~--~I~~l 553 (670)
|++|+|++++.+. ..++. +..-.++.++|+|+|+.||+|+.||.|.+|+..... ....-..|.. .|+||
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence 9999999986543 33332 233468899999999999999999999999975432 1233346766 89999
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCC--cceEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCccc
Q 005913 554 AMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHT--SCVWTLAYSCEGSLLASGSA------DCTVKLWDVTTSTKV 624 (670)
Q Consensus 554 ~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~~~~~~ 624 (670)
.||++|++|++-+.|+++++||++.. +++....+-. -+-+.++|||+.++|++|+. .|++.+||-.+..
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d-- 448 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD-- 448 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--
Confidence 99999999999999999999999865 4555554432 34578999999999999863 4789999977653
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.++.+.-....|..+.|+|.-.-+.+|+.||+
T Consensus 449 -------------~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 449 -------------TVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred -------------eEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 34455555778999999999777788888886
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=229.12 Aligned_cols=269 Identities=20% Similarity=0.316 Sum_probs=218.6
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 351 ~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
.+.|.+++||| ...++++|+.||+||+|+++..+.. .-+....|.++|.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------------------~~ka~~~~~~PvL~v~W 80 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------------------VPKAQQSHDGPVLDVCW 80 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------------------cchhhhccCCCeEEEEE
Confidence 46799999999 5677779999999999999852111 11334568999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
+.+|..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+... .|+|||.|++|+.||++...++..+.-. ..
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR 158 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER 158 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence 999999999999999999999988 5556677999999999988655 7999999999999999999998887743 55
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe--eeE
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVT 583 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~--~~~ 583 (670)
+.++.. -...++++..++.|.+|+++++..... ...-.-.++|+++.++....+.|+-+|.+-|..+..+. .-.
T Consensus 159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 666554 345788899999999999987654321 11223468999999998888999999999999998763 333
Q ss_pred EeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE
Q 005913 584 PLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 654 (670)
Q Consensus 584 ~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 654 (670)
.++-|. -.|.+++|+|.-..|+|+|.||++.+||-....+ +.+.+++..||.+.+|
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k---------------Lk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK---------------LKTSETHPQPITCCSF 301 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh---------------hhccCcCCCccceeEe
Confidence 445554 2477899999999999999999999999776543 5677889999999999
Q ss_pred ecCCcEEEEe
Q 005913 655 SRRNLLFAAG 664 (670)
Q Consensus 655 s~~~~~La~g 664 (670)
+.+|.++|-+
T Consensus 302 n~~G~ifaYA 311 (347)
T KOG0647|consen 302 NRNGSIFAYA 311 (347)
T ss_pred cCCCCEEEEE
Confidence 9999998754
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=242.51 Aligned_cols=249 Identities=21% Similarity=0.374 Sum_probs=211.4
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
..|+.+|..+|..+.||||.++|++++.+..+.+||+.+..... .--.+|...
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~---------------------------~y~~~~~~S 314 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH---------------------------LYPSGLGFS 314 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh---------------------------hcccCcCCC
Confidence 56889999999999999999999999999999999998632211 111235688
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
+.+++|.|||..+++|+.|++|..||++. ..+...++- ...|++++.++||.++++.+.|..+++++.++......+.
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis 393 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS 393 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence 99999999999999999999999999984 444444443 3569999999999999999999999999998766555555
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC--eEEEEEcC-CCCEEEEEECCCeEEEEeCCCC
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
. ..+|++.+.+.+++++++.-.+..|++||+...+.++.+.||... |-.-+|-- +..++++|++|+.|+||+..+|
T Consensus 394 e-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 394 E-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred c-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 3 478999999999999999999999999999999999999998764 33334443 5579999999999999999999
Q ss_pred eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCC
Q 005913 580 RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
+++..+.||...|.+++|+| +..++|++|.||+||||-....
T Consensus 473 kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999 5568999999999999987653
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=230.55 Aligned_cols=242 Identities=28% Similarity=0.396 Sum_probs=216.5
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCccCEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~ 425 (670)
|.-+...|.|+.||.|..+||+|+.||.|+||.+.+. ...+.+ ..|+..|+
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----------------------------~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----------------------------QCLRRFDRAHTKGVT 310 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecc----------------------------hHHHHhhhhhccCee
Confidence 5567789999999999999999999999999998863 233333 38999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc--
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-- 503 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~-- 503 (670)
|+.||.|+..+++++.|.++++.-+.++++++.++||.+-|+...|.++|+++++++.||+|++|+..+..++.+++.
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred cCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 504 ~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
...+|+.+-.-| +...++++....+|++.++ .|+.++.|... .+...+.+.||.|.++++.+.|+.++.|...+|
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 345677776666 4568888889999999997 58888888642 356778889999999999999999999999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
+....+..|...|..++.+|..+.|++-+.||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999995
No 78
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=241.33 Aligned_cols=273 Identities=18% Similarity=0.352 Sum_probs=232.9
Q ss_pred eecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+.+|.++|.|++=+|.. ..+|+|+.||.|+|||+.. ......+..|.+.|.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------------------------R~~~~~f~AH~G~V~ 113 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------------------------RECIRTFKAHEGLVR 113 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh----------------------------hhhhheeecccCcee
Confidence 47899999999999987 8899999999999999975 345677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
+|++.. ..+++++.|.+|+.|.+.. ..+.++.+ ...+.++.-+..+..|+|||. .|.|||.....|+..+.-..
T Consensus 114 Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 114 GICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred eEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCC
Confidence 999986 7789999999999999885 46666664 445778888878888999986 59999999999999999888
Q ss_pred CCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeE
Q 005913 506 SDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVT 583 (670)
Q Consensus 506 ~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~ 583 (670)
..|.++.|+|... .|++|.+|+.|.+||++++.++....- ...-..|+|+|.+-.+++|++|..++.||++.- .++.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccch
Confidence 9999999999765 556677999999999999998876642 344578999998888999999999999999864 5677
Q ss_pred EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEE
Q 005913 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFA 662 (670)
Q Consensus 584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La 662 (670)
...+|.+.|.+++|||.|+-+++||.|.+|+||.+..+..- ..+.+ .-..|.+|.||.|.+++.
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR---------------diYhtkRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR---------------DIYHTKRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch---------------hhhhHhhhheeeEEEEeccccEEE
Confidence 78899999999999999999999999999999999875421 11222 235799999999999999
Q ss_pred EeeCCCC
Q 005913 663 AGALSKT 669 (670)
Q Consensus 663 ~gs~dgs 669 (670)
+||+|++
T Consensus 332 SGSdd~n 338 (433)
T KOG0268|consen 332 SGSDDGN 338 (433)
T ss_pred ecCCCcc
Confidence 9999986
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=227.93 Aligned_cols=246 Identities=23% Similarity=0.395 Sum_probs=210.9
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.|.+..|.+.|+|++.+ +.++|+|+.|-+|+|||+.. ......+..|.+.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS 85 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence 45778899999999996 89999999999999999975 2344556779999
Q ss_pred EEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 424 V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
|+++.|.++-. .|++|+.||.|.+|+...+.++..+++|.+.|+.++.+|.|+.-++.+.|+.++.|++-+++.-...
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 99999998775 8999999999999999999999999999999999999999999999999999999999888766555
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
.-. .....+.|+|.|.+++.++.+ .|-+|.+.+....+.+.. ...+.|+.|- ++..|++|++|+.|.+||..+..+
T Consensus 166 ~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 166 NLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred ccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 422 233449999999999988766 488999887766655443 2456677765 567899999999999999999999
Q ss_pred eEEeeCCCcceEEEEE--cCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 582 VTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
...+.+|...|.++.+ .|++.+|+|+|+||.|+|||++...+
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 9999999999999884 56789999999999999999988643
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.3e-27 Score=261.75 Aligned_cols=266 Identities=23% Similarity=0.411 Sum_probs=223.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+...|.+.|+|+.|||||++||+|+.|+.|.||.......... ....+ ........+.+..+.+|.+.|.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~-fgs~g---------~~~~vE~wk~~~~l~~H~~DV~ 133 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV-FGSTG---------GAKNVESWKVVSILRGHDSDVL 133 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc-ccccc---------cccccceeeEEEEEecCCCccc
Confidence 5678889999999999999999999999999999874110000 00000 0001123567888999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
.++|+|++.+|++++.|++|.+|+..+...+.++.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+....+.+.++.
T Consensus 134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877777776554
Q ss_pred C------CeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-----CCC----------
Q 005913 506 S------DVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-----DGR---------- 560 (670)
Q Consensus 506 ~------~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-----~g~---------- 560 (670)
. .+..+.|+|||.+|+++.. -.++.|.+-.+.+.-..+.||.+++.+++|+| ...
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 3 4678999999999998542 34788999888888889999999999999998 111
Q ss_pred --EEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 561 --~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.+|+|+.|++|.||.....+++..+.. ...+|..++|+|||..|+.+|.||+|.+..+...
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 678899999999999988888765542 3578999999999999999999999999998764
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.4e-27 Score=239.30 Aligned_cols=264 Identities=27% Similarity=0.424 Sum_probs=218.2
Q ss_pred CCceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 339 LPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 339 ~ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
.+.+.....+.|.+.|+.+..-|. ..++|+++..+.|.|||..+...... ..+....-..+
T Consensus 112 ~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------------~~~~~~Pdl~L 173 (422)
T KOG0264|consen 112 SGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------------ASGECRPDLRL 173 (422)
T ss_pred ccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------------ccccCCCceEE
Confidence 345556667889999999999885 56778889999999999875322111 00123445678
Q ss_pred ecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-------eeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913 418 QGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~ 488 (670)
.||.+.-++++|++... .|++|+.|++|.+||+.... ....+.+|...|.+++|++ +...|++++.|+.+.
T Consensus 174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 89999899999999765 78999999999999997543 3567889999999999999 667899999999999
Q ss_pred EEECC--CCceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913 489 IWSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMA 563 (670)
Q Consensus 489 lwd~~--~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~ 563 (670)
|||++ +.++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+|+- +++..+.+|...|.++.|||+ ...||
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 99999 6677778889999999999998 5677889999999999999974 578889999999999999995 56889
Q ss_pred EEECCCeEEEEeCCCC--------------eeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 005913 564 SGDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~--------------~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~ 620 (670)
+++.|+.+.+||+..- +++..-.||+..|..++|+|+.. .|+|.+.|+.+.||....
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999642 22345568999999999999766 577888999999999864
No 82
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.2e-26 Score=251.37 Aligned_cols=233 Identities=16% Similarity=0.219 Sum_probs=192.9
Q ss_pred eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+.+|.+.|++++|+| ++++||+|+.||+|+||++....... ........+.+|...|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG 129 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence 578899999999999 89999999999999999987521100 01124566889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+++|+|++ ++|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++++.|++|++||+++++.+..+.+|
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 99999986 68999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCC-eeEEEEcCCCCEEEEEE----cCCcEEEEECCCCc-EEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCCeEEEEeC
Q 005913 505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (670)
Q Consensus 505 ~~~-v~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~-~~~~~~~h-~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl 576 (670)
.+. +..+.|++++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 765 45678999888887754 47899999998754 34333323 34566678999999999887 5999999999
Q ss_pred CCCeeeEEeeC-CCcceEEEEEcCC
Q 005913 577 ASGRCVTPLMG-HTSCVWTLAYSCE 600 (670)
Q Consensus 577 ~~~~~~~~~~~-h~~~V~sl~~s~~ 600 (670)
.++..+..... +..++..++|.|.
T Consensus 290 ~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 290 MNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCCceEEEeeccCCCCCcceEeccc
Confidence 99987766543 4456788888874
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.2e-27 Score=254.57 Aligned_cols=260 Identities=27% Similarity=0.493 Sum_probs=232.2
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+....-...-.+.+|.++|.+++|..-+.+|++|+.|.+++|||+.+
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-------------------------- 280 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-------------------------- 280 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------
Confidence 345567776555555445999999999999998889999999999999999775
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
+.....+.+|.+.|.++... ...+++||.|.+|++|++.++..+..+.+|..+|.++..+ +.++++|+.|++|+
T Consensus 281 --g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 281 --GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred --CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence 45677888999999998886 5678889999999999999999999999999999999997 88999999999999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
+||+.+++++..+.+|...|.++.+.+. +.+++|+.|++|++||++++ +++..+.+|..-+.++.+. +++|++++.
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~a 431 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSA 431 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccc
Confidence 9999999999999999999999988665 89999999999999999999 9999999999988766654 789999999
Q ss_pred CCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913 568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~ 625 (670)
||.|++||..+++++..+.+ |.+.|+.+++. ...+++++.||++++||+.++....
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 99999999999999999998 67899999886 4679999999999999999987654
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-27 Score=238.90 Aligned_cols=244 Identities=21% Similarity=0.346 Sum_probs=212.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+......|.+++|-.||++||+|...|.|+|||+.+ ...++.+.+|+.+|..
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------RVILRQLYAHQAPVHV 115 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------HHHHHHHhhccCceeE
Confidence 445567899999999999999999999999999653 3456778899999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913 427 ASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (670)
Q Consensus 427 l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~ 503 (670)
+.|+|.++ .+++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+|++||++.. ..+..+.
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln- 194 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN- 194 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence 99999765 677899999999999998887668899999999999999 5678999999999999999876 5555554
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
|..+|..+.+-|.|..|++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++|+-||.+++||+.+.+.+
T Consensus 195 hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 889999999999999999986 56899999996554 4445559999999999999999999999999999999888888
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..+. ..++|.+++.+|+++.++.|..||.+.+-+....
T Consensus 274 ~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 274 HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred Eeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 7775 6689999999999999999999999888755443
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.7e-27 Score=247.96 Aligned_cols=263 Identities=25% Similarity=0.426 Sum_probs=228.4
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+.+|+... ..|..|+.. +-+.|..|-|.++++++|...|.+.+||+..
T Consensus 393 ~~SikiWn~~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-------------------------- 443 (888)
T KOG0306|consen 393 GESIKIWNRDT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS-------------------------- 443 (888)
T ss_pred CCcEEEEEccC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh--------------------------
Confidence 34566665432 223334332 3799999999999999999999999999874
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CceeEEee-------CCCccEeEEEEecCCC
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLVCYK-------GHNYPVWDVQFNPQGH 476 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~-------~h~~~V~~l~~sp~g~ 476 (670)
...+.....|.+.|++++.+||+..+++||.|.+|++||... +...+.++ .-...|.|+.+||||.
T Consensus 444 --~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 --ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred --hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 123444568999999999999999999999999999999642 11111111 1346799999999999
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 005913 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (670)
Q Consensus 477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 556 (670)
+++++--|.+|++|-+++.+-.-.+.||.-+|.||..+|+++.++||+.|+.|++|-+.=|.|-+.+.+|...|+++.|-
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
|....++++|.||.|+-||-.+-..+..+.+|...|++++.+|+|.+++++|.|.+|++|.-....
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999976643
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-26 Score=243.76 Aligned_cols=268 Identities=24% Similarity=0.346 Sum_probs=230.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
.+-+.|| ..+.||+| ....|.+|+.... ........+...|+++.|+++|
T Consensus 180 ~nlldWs-s~n~laVa-lg~~vylW~~~s~----------------------------~v~~l~~~~~~~vtSv~ws~~G 229 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVA-LGQSVYLWSASSG----------------------------SVTELCSFGEELVTSVKWSPDG 229 (484)
T ss_pred hhHhhcc-cCCeEEEE-ecceEEEEecCCC----------------------------ceEEeEecCCCceEEEEECCCC
Confidence 4456788 56678888 4567999997642 1222233347899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCCCeeEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV 511 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~~v~~v 511 (670)
.+|++|..+|.|.|||....+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 9999999999999999999999999998 99999999998 67899999999999999998766555 88999999999
Q ss_pred EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEE--ECCCeEEEEeCCCCeeeEEeeCC
Q 005913 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG--DEDGTIMMWDLASGRCVTPLMGH 588 (670)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg--~~dg~I~iwDl~~~~~~~~~~~h 588 (670)
+|+++++++|+|+.|+.+.|||.....++..+..|.+.|.+++|+| ....||+| +.|+.|++||..+|..+..+. -
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t 386 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T 386 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence 9999999999999999999999988899999999999999999999 56688886 479999999999999887764 3
Q ss_pred CcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 589 TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 589 ~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.+.|.+|.|++..+-|+++. .++.|.||++.+. ..+..+.+|...|..++++|+|..+++|+.
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 46799999999887666553 5678999999874 346678899999999999999999999999
Q ss_pred CCC
Q 005913 667 SKT 669 (670)
Q Consensus 667 dgs 669 (670)
|.|
T Consensus 452 DET 454 (484)
T KOG0305|consen 452 DET 454 (484)
T ss_pred cCc
Confidence 875
No 87
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=218.02 Aligned_cols=234 Identities=28% Similarity=0.390 Sum_probs=209.8
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~ 495 (670)
.++||..+++.+.++.+|++|.+|+.|.++.+|-...++.+-+|.||.+.|||+....+..++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECC-------CCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l~ 563 (670)
+.+..+. ...+|..+.|+++|++++..+.+ +.|.++|++ ...+...+..+...++.+.|+|-+.+|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999887 45889999999999999887654 579999998 4566777888889999999999999999
Q ss_pred EEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 564 SGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
+|..||.|.+||+++|. .+.....|...|+.++++++..++++++.|.+-++||+.+.+ .++++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~---------------v~Kty 228 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE---------------VLKTY 228 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee---------------eEEEe
Confidence 99999999999999985 455567899999999999999999999999999999998854 34555
Q ss_pred CCCCCCeEEEEEecCCcEEEEeeC
Q 005913 643 PTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 643 ~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.+ ..||++.+++|-...++.|+-
T Consensus 229 ~t-e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 229 TT-ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ee-cccccceecccccceEEecCC
Confidence 44 469999999998777776654
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=206.18 Aligned_cols=258 Identities=22% Similarity=0.320 Sum_probs=216.9
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
..|++.+..-..|.+.|.|.+|||+|.++|+|+.|.+|++.-.+......+ ..-..+
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~ 132 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF 132 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence 446777767778889999999999999999999999999988764322211 122346
Q ss_pred ecCccCEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~----~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
.-|.+.|..++|-.+ +..|++++ .|..|++-|..+++....+.+|++.|.++ ++-+|-.|++|+.|.+|++||+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl 211 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL 211 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence 679999999999653 34666654 57788888999999999999999999765 4447889999999999999999
Q ss_pred CCCceeEEecc-------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 493 DRIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 493 ~~~~~~~~~~~-------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
+-..++..+.. ..+.|.+++..|.|+.|++|..|..+.+||++.++.++.|..|...|.|+.|||...|+++|
T Consensus 212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 98888877642 23568999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 566 ~~dg~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
+.|..|++-|+... -++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999998632 2334455799999999999999999999999999999764
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=247.89 Aligned_cols=239 Identities=22% Similarity=0.396 Sum_probs=213.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
|.+++|.+|+.||.|++|+......... ......+..|+..|..+....+++.|+++|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------~~~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------TPYIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcc----------------------cchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 5678899999999999999875221110 113445678999999999999999999999
Q ss_pred CCCeEEEEeCCCC--ceeEEeeCCCccEeEEEE-ecCCCEEEEEECCCcEEEEECCCCce----------eEEec-ccCC
Q 005913 441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS 506 (670)
Q Consensus 441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~g~~l~s~s~dg~v~lwd~~~~~~----------~~~~~-~~~~ 506 (670)
.|.+|++|+.... -+..++..|..-|.|+++ .++...+|+||-|+.|.+||++++.. ...+. |+..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999999877 577788899999999999 77889999999999999999997622 22233 7888
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.|.+++.+++|..|++|+..+.+++||.++++.+..+.||+..|.++..++||..+++++.||+|++||+...+|+.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.|...|+++..+|+=..+++|+.||.|..=|+.+.
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999885
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=222.01 Aligned_cols=281 Identities=22% Similarity=0.378 Sum_probs=236.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|.++|+.++.......+.+++.|.+-+||.+.. +..+..+.||.+.|+
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN 194 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence 4678999999999988888999999999999999986 456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeC------CC----------------------------------CceeEEeeCCCcc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWST------KL----------------------------------NANLVCYKGHNYP 465 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~------~~----------------------------------~~~~~~~~~h~~~ 465 (670)
++.|++.+.+++++|.|++-.||.. .. ..++..+.+|...
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v 274 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV 274 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence 9999999999999999999999961 10 0134567889999
Q ss_pred EeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEe
Q 005913 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI 544 (670)
Q Consensus 466 V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~ 544 (670)
|.+..|...|+.+++++.|++..+||++++.++..+.||....+.++-||..+++++.+.|.+.++||++. -..+..|.
T Consensus 275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 35688999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 545 ~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+|...|+++.|..+. .+++|++|.+|++||+++.+ ++.+++ -.+++..++.+..+.+|+.--.+..|++||+.....
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999999999999764 68899999999999998764 566665 456889999998888999999999999999987432
Q ss_pred ccccccccCCcccccccccCCCCCCeEEEEEecCCc--EEEEeeCC
Q 005913 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALS 667 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~--~La~gs~d 667 (670)
.. . +-..-.+|..-|.|++|..+-. -|.++++|
T Consensus 433 aR-l----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 433 AR-L----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred cc-C----------CcccccccceeeeeeeccccCccccccccccc
Confidence 10 0 0113346777899999975432 24455554
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.1e-27 Score=219.26 Aligned_cols=247 Identities=21% Similarity=0.350 Sum_probs=219.3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
=||.+|.+.|++..++.+....|++..|-+-+|||.-+... +. --.|..-|
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde----------------------------lh-sf~hkhiv 103 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE----------------------------LH-SFEHKHIV 103 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh----------------------------hh-hhhhhhee
Confidence 37999999999999999999999999999999999764211 11 12478899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
.+++|+.|.++|++|+.+..+||||++..+ ....+.+|.+.|..+.|....+.|++.+.|++||+||.+++..+..+.
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~- 182 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE- 182 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-
Confidence 999999999999999999999999998764 467789999999999999988999999999999999999999998887
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
...+|+++..+++|.+|.++ ..+.|.+||..+...+..+.. ...|.+..++|+...+++|+.|+.++.||..+|..+.
T Consensus 183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 45789999999999887765 467899999999988887754 3568999999999999999999999999999999998
Q ss_pred Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 584 PL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 584 ~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+ .+|-++|.++.|+|+|...++||.||+|++|....++.
T Consensus 261 ~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 86 89999999999999999999999999999999877654
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.5e-25 Score=214.48 Aligned_cols=267 Identities=19% Similarity=0.271 Sum_probs=217.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
...|+.+.|+|.++.|++++.||++++|+.... ..+..-.|.+++.+++|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~ 63 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA 63 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence 567999999999999999999999999998752 223334588999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~ 510 (670)
+ ...+++|+.||.|+.+|+.++.... +..|..+|.|+.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus 64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 6 5678999999999999999775544 556999999999999888999999999999999997555555543 347887
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC----eeeEE
Q 005913 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP 584 (670)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~----~~~~~ 584 (670)
+.. .++.|++|+.|..|.+||+++....... ..-.-.+.|+++-|++.-.++++-||+|.+=.+... ..-..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 765 6889999999999999999986554322 223457899999999888999999999998777655 23334
Q ss_pred eeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913 585 LMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 655 (670)
Q Consensus 585 ~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 655 (670)
|+.|. -+|.+++|+|-...|+||+.||.|.+||..+.+. +..+....+.|.+++|+
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr---------------l~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR---------------LKQLAKYETSISSLSFS 283 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh---------------hhhccCCCCceEEEEec
Confidence 55553 3799999999989999999999999999988643 44555557789999999
Q ss_pred cCCcEEEEeeC
Q 005913 656 RRNLLFAAGAL 666 (670)
Q Consensus 656 ~~~~~La~gs~ 666 (670)
.+|.+||+|+.
T Consensus 284 ~dG~~LAia~s 294 (323)
T KOG1036|consen 284 MDGSLLAIASS 294 (323)
T ss_pred cCCCeEEEEec
Confidence 99999999875
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=247.33 Aligned_cols=232 Identities=24% Similarity=0.418 Sum_probs=191.1
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------------C-------------
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--------------------------------N------------- 453 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--------------------------------~------------- 453 (670)
.|.+.|+++.||+||+|||+|+.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999997654 0
Q ss_pred ---------------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CC
Q 005913 454 ---------------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NC 517 (670)
Q Consensus 454 ---------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~ 517 (670)
+++..|.||...|.++.||.++ +|++++.|.||++|++....++..|. |..-|+||+|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 1123467899999999999665 89999999999999999999999997 999999999999 67
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee--CC------C
Q 005913 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GH------T 589 (670)
Q Consensus 518 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h------~ 589 (670)
+|+++|+-||.||||++...+.+.-. .-..-|++++|+|||++.+.|+.+|.+++|+....+....+. .| .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999877766543 444789999999999999999999999999998776665442 11 2
Q ss_pred cceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC--CCCeEEEEEecCCcEEEEeeC
Q 005913 590 SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 590 ~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs~ 666 (670)
..|+.+.|.|. ...+++.+.|..|||+|......+ ..|.+. ...-....|+.+|+++++|+.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv---------------~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV---------------HKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh---------------hhhcccccCCcceeeeEccCCCEEEEeec
Confidence 27999999874 346778889999999998664332 222221 223456689999999999997
Q ss_pred CC
Q 005913 667 SK 668 (670)
Q Consensus 667 dg 668 (670)
|.
T Consensus 567 Ds 568 (712)
T KOG0283|consen 567 DS 568 (712)
T ss_pred Cc
Confidence 74
No 94
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.4e-25 Score=243.01 Aligned_cols=218 Identities=21% Similarity=0.321 Sum_probs=180.9
Q ss_pred EeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC--------ceeEEecccCCCee
Q 005913 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVD 509 (670)
Q Consensus 439 ~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~--------~~~~~~~~~~~~v~ 509 (670)
|+.++.|++|+......+..+.+|..+|++++|+|+ +.+|++|+.||+|++||+.++ .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999887788889999999999999996 789999999999999999753 23456789999999
Q ss_pred EEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC
Q 005913 510 CVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (670)
Q Consensus 510 ~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h 588 (670)
+++|+|++..+ ++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999998765 688999999999999998877775 5678999999999999999999999999999999999999999
Q ss_pred CcceEE-----EEEcCCCCEEEEEECCC----cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 589 TSCVWT-----LAYSCEGSLLASGSADC----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 589 ~~~V~s-----l~~s~~g~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
.+.+.+ ..|++++.+|++++.|+ +|+|||+....... ....+....+.+......++|.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl------------~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL------------VTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce------------EEEEecCCccceEEeeeCCCCC
Confidence 876543 34568999999988774 79999998643211 1123344455555666677799
Q ss_pred EEEEeeCCCC
Q 005913 660 LFAAGALSKT 669 (670)
Q Consensus 660 ~La~gs~dgs 669 (670)
++++|+.|++
T Consensus 277 l~lsGkGD~t 286 (568)
T PTZ00420 277 IYLIGKGDGN 286 (568)
T ss_pred EEEEEECCCe
Confidence 9999998875
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.9e-26 Score=239.44 Aligned_cols=270 Identities=23% Similarity=0.430 Sum_probs=227.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|...|..+++.++ ..+++|+.||++++|+-... .......+.+|.+-|.
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i~ 61 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFIA 61 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCc--------------------------ccccceecccCcceee
Confidence 56788889988887654 47888999999999996431 1123345667778777
Q ss_pred E-EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 426 S-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 426 ~-l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
+ +++.+ ++-.|++|+.|++|.+|...+..++..+++|...|+++....++. +++||.|.++++|... +....+.+
T Consensus 62 ~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g 138 (745)
T KOG0301|consen 62 NSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG 138 (745)
T ss_pred ccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC
Confidence 7 88876 334599999999999999999999999999999999999888887 9999999999999864 45666899
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
|...|.+++.-|.+ .++||+.|++|++|. .++++++|.+|...|+.+++-|++ .+++++.||.|+.|++ +|.++.
T Consensus 139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 139 HTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred cchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee
Confidence 99999999998887 899999999999997 488999999999999999999875 5779999999999998 899999
Q ss_pred EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
++.+|++-|++++...++..+++++.|++++||+.... ...+.-..+.|+++.+-++|.+ ++
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgDI-vv 275 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGDI-VV 275 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCCE-EE
Confidence 99999999999998888999999999999999997632 2233333457999999999985 45
Q ss_pred eeCCC
Q 005913 664 GALSK 668 (670)
Q Consensus 664 gs~dg 668 (670)
|+.||
T Consensus 276 g~SDG 280 (745)
T KOG0301|consen 276 GGSDG 280 (745)
T ss_pred eccCc
Confidence 56665
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=215.39 Aligned_cols=237 Identities=23% Similarity=0.358 Sum_probs=209.1
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS 491 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd 491 (670)
+.+.+|.+.|.+++|+.+|..|++|+.|+++.+|++....... .+.+|...|-.++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677899999999999999999999999999999998765443 4678999999999998 677899999999999999
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
++.+++...+....+.+ -+.|+|+|+++++|+.|..|.+.|.++.+.+.... ....+..++|+-++.+++.....|.|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999998887554444 57899999999999999999999999988876654 34567788999888888877778999
Q ss_pred EEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
.|.....-+++..+.+|.....++.|+|+|+++|+|+.|..+.+||+... -++..++.+.=||..
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRT 236 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------------ICERCISRLDWPVRT 236 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------------hhheeeccccCceEE
Confidence 99999999999999999999999999999999999999999999998763 345677778889999
Q ss_pred EEEecCCcEEEEeeCCC
Q 005913 652 LQFSRRNLLFAAGALSK 668 (670)
Q Consensus 652 l~fs~~~~~La~gs~dg 668 (670)
++||.+|++||+||.|-
T Consensus 237 lSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDH 253 (313)
T ss_pred EEeccCcceeeccCccc
Confidence 99999999999999874
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=219.38 Aligned_cols=256 Identities=23% Similarity=0.374 Sum_probs=211.5
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------------ceeEEeeCCCccEeEEEEecC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN------------------ANLVCYKGHNYPVWDVQFNPQ 474 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------------------~~~~~~~~h~~~V~~l~~sp~ 474 (670)
....+..|.+++.+.+|+|||.++++||.|.+|+|.|++.. -.++++-.|..+|.++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 44567789999999999999999999999999999998611 134566679999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---ecCCCC
Q 005913 475 GHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSM 549 (670)
Q Consensus 475 g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---~~h~~~ 549 (670)
...|++|+.|++|+++|+......+-++ ....+|.++.|||.|.+|++|+...++++||+.+-+|...- ..|.+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999998654433332 24468999999999999999999999999999998886543 368899
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
|+++.+|+.|++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+|+++.+.|.|..|++|.+.++..+...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999999999999998885 566 57999999999999999999999999999987665433
Q ss_pred ccc---------------------------cC-Cccc------ccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 628 EEK---------------------------SG-TNRL------RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 628 ~~~---------------------------~~-~~~~------~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
... .. .-.| +.-..--+|.+++..+.-||.+.-+.+++.|-
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 110 00 0000 01112236888999999999999999999874
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=229.03 Aligned_cols=257 Identities=22% Similarity=0.333 Sum_probs=219.3
Q ss_pred cccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 328 LRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
....+++|+...... ..-++.+..++|+.+.|.+++.++++++.|+.+++|+++.
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~------------------------ 250 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS------------------------ 250 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc------------------------
Confidence 445677887654432 2235667778899999999999999999999999999875
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
.+...++.||++.|+++.|......+++|+.|.+|++||+....|...+-. ...+.+|..+ ...+++|-.|++
T Consensus 251 ----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 251 ----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccc
Confidence 345677889999999999998777799999999999999998777765542 3345666665 567889999999
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC----CCeEEEEEcCCCCEE
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR----SMILSLAMSPDGRYM 562 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~I~~l~~sp~g~~l 562 (670)
|++||.+...+.+....+ +.|+++..++++..|.+++.|.++.+.|+++......+.... ...+.+.|||++.|+
T Consensus 324 vRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred eEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 999999999999999877 499999999999999999999999999999998887775422 347889999999999
Q ss_pred EEEECCCeEEEEeCCCCeeeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 563 ASGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
++|+.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999988876544 59999999999999999999999999
No 99
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.2e-27 Score=250.28 Aligned_cols=236 Identities=27% Similarity=0.544 Sum_probs=218.6
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
+..|+..|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++....+++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34688889888887778899999999999999998888888899999999999999999999999999999999999999
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
.++.+.+|...+..+.|||-+.|.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+++++|++|..++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
..|+.+..|..|.+.|.++.|+|..-++++||.|++|++||+++... +....+....|.+++|+|
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~---------------I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV---------------ISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE---------------eeccCCccCCceeeeecC
Confidence 99999999999999999999999999999999999999999987543 334445567899999999
Q ss_pred CCcEEEEeeCC
Q 005913 657 RNLLFAAGALS 667 (670)
Q Consensus 657 ~~~~La~gs~d 667 (670)
++..+++|...
T Consensus 249 ~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 DGKIVLSGEQI 259 (825)
T ss_pred CceeeecCchh
Confidence 99999888653
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=5.9e-26 Score=230.11 Aligned_cols=278 Identities=20% Similarity=0.371 Sum_probs=230.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecCccCE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSGPV 424 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V 424 (670)
.++|.+-|.++.+|...+++.+| ..|.|+|||+...... ..+..+ .....-|
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k-------------------------~PvsqLdcl~rdnyi 468 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNK-------------------------SPVSQLDCLNRDNYI 468 (705)
T ss_pred hhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCC-------------------------CccccccccCcccce
Confidence 45666668888999999999999 6789999999853211 111111 1234678
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.++..+|||+.|++|+.-.++.|||+........ +....-....++.+||.+..++++.||.|.|||+.+...++.|.
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq 548 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ 548 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence 8999999999999999999999999987655432 33333456779999999999999999999999999999999999
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
||...+.||..+++|..|.||+-|.+||.||+++++.+... .....|.++..+|++.+|+.|-.++.+.+..... ...
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~k 626 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEK 626 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC-ccc
Confidence 99999999999999999999999999999999999877543 2457899999999999999999999999888643 344
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 662 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La 662 (670)
..+.-|.+.|.++.|++.|+++++.+.|+.+..|...-+..+... ...++|.++..|.++++++
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------------kE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------------KESSSVLSCDISFDDKYIV 690 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------------cccCcceeeeeccCceEEE
Confidence 566779999999999999999999999999999998877543211 2356899999999999999
Q ss_pred EeeCCC
Q 005913 663 AGALSK 668 (670)
Q Consensus 663 ~gs~dg 668 (670)
+|+-|+
T Consensus 691 TGSGdk 696 (705)
T KOG0639|consen 691 TGSGDK 696 (705)
T ss_pred ecCCCc
Confidence 999874
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=222.90 Aligned_cols=232 Identities=27% Similarity=0.380 Sum_probs=208.7
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
..++++...|..+.+++|+.|.++.++|...++.+..++||...|+.+.++|+...+++++.|-.|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46778888888789999999999999999999999999999999999999999999999999999999999887777888
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
..|..+|+.+..||+|.||++++.||+..+.|++++.++...... .-.+++.+|+|||..|.+|..||.|+|||+.++
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 899999999999999999999999999999999999988766542 245899999999999999999999999999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
..+..|.+|+++|..++|+.+|-+|++++.|+.|++||++...... ...++.+. +|.++.|.+.|.
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k-------------t~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK-------------TIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc-------------eeeccccc-cceeEEEcCCCC
Confidence 9999999999999999999999999999999999999998854321 11233333 799999999999
Q ss_pred EEEEeeCC
Q 005913 660 LFAAGALS 667 (670)
Q Consensus 660 ~La~gs~d 667 (670)
+|++++.+
T Consensus 446 ~L~~~g~~ 453 (506)
T KOG0289|consen 446 YLGIAGSD 453 (506)
T ss_pred eEEeecce
Confidence 99998654
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2e-24 Score=218.29 Aligned_cols=255 Identities=20% Similarity=0.348 Sum_probs=207.7
Q ss_pred ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce----------eEEeeCCCccEeEEEEec-CCCEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNP-QGHYFAS 480 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp-~g~~l~s 480 (670)
.......|.+.|+.+.+-|... .+++.+..+.|.|||...... -..+.+|...-.+++|++ ..-++++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 3444567999999999999776 566778889999999764322 236788988888899999 4457999
Q ss_pred EECCCcEEEEECCCC-------ceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECC--CCcEEEEEecCCCCe
Q 005913 481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI 550 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~-------~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I 550 (670)
|+.|++|++||+... .+...+.+|...|..++||+-. ..+++++.|+.+.|||+| +.++.....+|.++|
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999999643 3456788999999999999854 577788999999999999 566677788999999
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 551 LSLAMSP-DGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 551 ~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.|++|+| ++..||||+.|++|.+||+++- +++..+.+|...|.++.|||+ ..+|++++.|+.+.|||+..-......
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999999 5668889999999999999965 578899999999999999995 578999999999999999876544331
Q ss_pred ccccCCcccccccccCCCCCCeEEEEEecCCcEEE-EeeCCC
Q 005913 628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSK 668 (670)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La-~gs~dg 668 (670)
.......+.++....+|...|..+.|+|+..+++ +.+.|+
T Consensus 356 -eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 356 -EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred -hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 2223344567788889999999999999986654 445443
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=227.55 Aligned_cols=242 Identities=24% Similarity=0.383 Sum_probs=190.5
Q ss_pred eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEe-eCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCY-KGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
-..+.+|+..|.++++.|.|-.|++||.|.+|++||+...... +.+ ......|.+++|++.|..|++.+....++
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3567889999999999999999999999999999998854332 111 23456799999999999999999999999
Q ss_pred EEECCCCceeEE------------ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcE-EEEEe-----cCCCC
Q 005913 489 IWSMDRIQPLRI------------MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRSM 549 (670)
Q Consensus 489 lwd~~~~~~~~~------------~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~~ 549 (670)
++|-+....+.. -+||...++|.+|||.. +.+++++.||++|+||+...+. ..++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999876544332 35899999999999965 5788999999999999986543 33332 23447
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCee---eEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~---~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
++.++|+|+|.+||+|+.||.|.+||..+... +..-.+|.. .|+|++||++|++|++-|.|+++++||+......
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999999865422 222346776 8999999999999999999999999999886543
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
..... -+ ...-+-+.++|||+.+++++|+.-
T Consensus 400 L~~~t-----------gL-~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 400 LNVRT-----------GL-PTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred hhhhc-----------CC-CccCCCCccccCCCceEEEecccc
Confidence 21110 11 112246788999999999999864
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=219.10 Aligned_cols=278 Identities=17% Similarity=0.271 Sum_probs=230.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
.+++|+|+.|+|...+|.+|+.||.++||.++.... ..+..+.-...+|.+.+|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------~~lqS~~l~~fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------PKLQSIHLEKFPIQKAEF 265 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------hhheeeeeccCccceeee
Confidence 457899999999999999999999999999986221 223334445689999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCCCceeEE--eeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 430 SPLGD-FILSSSADTTIRLWSTKLNANLVC--YKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 430 sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
.|+|. .+++++.-..++.||+.+.+.... ..++ ...+..+..++++++++..|..|.|.+.-..+++.+..++ -.
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie 344 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE 344 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence 99999 888999999999999987765432 2333 3357788899999999999999999999999998888887 45
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCC------
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS------ 578 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~------ 578 (670)
+.|..++|+.+++.|++++.+|.|++||++...+++.+....+ .-++++.|++|.|||+|+..|.|.|||..+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence 7899999999999999999999999999999999999975433 346788889999999999999999999753
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccC---CCCCCeEEEE
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP---TKSTPVYSLQ 653 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~V~~l~ 653 (670)
.+++..+..-...|+++.|++++++||.+| .+..+++-.+.+.+.. ..+| +.-+.|+|++
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF---------------sNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF---------------SNFPTSNTKVGHVTCMA 489 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee---------------ccCCCCCCcccceEEEE
Confidence 356777777778999999999999998887 4578999998876532 2333 3445699999
Q ss_pred EecCCcEEEEeeCCCC
Q 005913 654 FSRRNLLFAAGALSKT 669 (670)
Q Consensus 654 fs~~~~~La~gs~dgs 669 (670)
|||.+-+||.|..+|-
T Consensus 490 FSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGR 505 (514)
T ss_pred ecCCCceEEeecCCCc
Confidence 9999999999998873
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.6e-24 Score=227.00 Aligned_cols=295 Identities=21% Similarity=0.371 Sum_probs=228.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..++++|+..... ..|+|.++...|+|+.-+|--..+|+|..+|+|.|+++..
T Consensus 181 ~G~lql~Nvrt~K-~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-------------------------- 233 (910)
T KOG1539|consen 181 QGRLQLWNVRTGK-VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-------------------------- 233 (910)
T ss_pred CCcEEEEEeccCc-EEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--------------------------
Confidence 4578888866543 4678899999999999999999999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
.+.+..++...+.|++++|..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..
T Consensus 234 --dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 234 --DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred --CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 2344455544699999999999985 5677778999999998766554433 45555555556555555555555555
Q ss_pred EEEEECCCCc----------------------------------------------------------------------
Q 005913 487 ARIWSMDRIQ---------------------------------------------------------------------- 496 (670)
Q Consensus 487 v~lwd~~~~~---------------------------------------------------------------------- 496 (670)
+++|-.+++.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 5555222000
Q ss_pred -----ee--------------------------------------EEec-----ccCCCeeEEEEcCCCCEEEEEEcCCc
Q 005913 497 -----PL--------------------------------------RIMA-----GHLSDVDCVRWHINCNYIATGSSDKT 528 (670)
Q Consensus 497 -----~~--------------------------------------~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~ 528 (670)
++ ..+. .....+.+++.++.||+.+.|++.|+
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 00 0000 01245788899999999999999999
Q ss_pred EEEEECCCCcEEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee------------------------
Q 005913 529 VRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------------------------ 581 (670)
Q Consensus 529 I~iwd~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~------------------------ 581 (670)
|-+|++++|-....| ..|.++|+.++..--++.+++++.+|.+.+||..+...
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 999999999888888 48999999999999999999999999999999865432
Q ss_pred -----------------eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 582 -----------------VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 582 -----------------~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
+..+.+|.+.|++++|||||++|++++.|++|++||+.++..+ -.+ .
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI---------------D~~-~ 615 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI---------------DGL-L 615 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee---------------eeE-e
Confidence 2234589999999999999999999999999999999997643 111 2
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
-..+..++.|||+|.+||+...|.
T Consensus 616 vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred cCCcceeeEECCCCCEEEEEEecC
Confidence 356899999999999999998774
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=206.13 Aligned_cols=282 Identities=18% Similarity=0.236 Sum_probs=211.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++.+|.+.|+|++||.||++||+++.|+.|+||++....... .+.++.. -.-+.-+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-----------------------Hr~~R~n-ve~dhpT 136 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-----------------------HRCIRQN-VEYDHPT 136 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-----------------------hhHhhcc-ccCCCce
Confidence 467899999999999999999999999999999987521110 0111111 1123457
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEeCCCCce------------eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 426 SASFSPLGDFIL-SSSADTTIRLWSTKLNAN------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 426 ~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~------------~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
.+.|+||-+.++ ++-...++++|.+...+. ...-+.|.-+|.++-....+.++++++.|..|.+|++
T Consensus 137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 789999987554 555566899997653211 1112236667777777778999999999999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CC-----cEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
. |+.+..+......-...+.+|+|+++++++-.--|.+|.+- .| ..+..+.+|...|..++||++...+++
T Consensus 217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 8 88888888777777888999999999999999999999873 22 234567899999999999999999999
Q ss_pred EECCCeEEEEeCCCC-------eeeEEe----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913 565 GDEDGTIMMWDLASG-------RCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633 (670)
Q Consensus 565 g~~dg~I~iwDl~~~-------~~~~~~----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 633 (670)
.+.||++++||+.-. +.++.. ....+....+..+|+|..|+.+. ..+++++..+.+.....
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~------- 367 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE------- 367 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh-------
Confidence 999999999998522 122222 11223344899999999888765 44799999888654211
Q ss_pred cccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.-..|.+.|.+++|+++|+++|+++..
T Consensus 368 -------~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 368 -------LEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred -------HHHhhcCceeeEEecCCCcEEeeecce
Confidence 123577889999999999999998763
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=229.73 Aligned_cols=270 Identities=18% Similarity=0.271 Sum_probs=225.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..|..+.+.++|.|+|.+|.+++.||.|++|+...... ......-+...|.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e---------------------------~P~ti~~~g~~v~~i 62 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE---------------------------EPETIDISGELVSSI 62 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc---------------------------CCchhhccCceeEEE
Confidence 35677899999999999999999999999999764100 000111166778777
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
+.. +.+|++|+.+++|.+|.+..++.-..+...+-++.+++|+.+|.++|.||.|-.|++.++........+.+|.++
T Consensus 63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 765 569999999999999999988776666667789999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
|.++.|+|++++||+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|.+|+...+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999999999999998876655431 345678999999999999999999999999999
Q ss_pred eeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913 580 RCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657 (670)
Q Consensus 580 ~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~ 657 (670)
.....++. +...+..++|+|+|.|||+++.||.|.|||+++... ......|.+++|.|+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPN 281 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCC
Confidence 98888764 345589999999999999999999999999987321 234456889999888
Q ss_pred CcEEEEee
Q 005913 658 NLLFAAGA 665 (670)
Q Consensus 658 ~~~La~gs 665 (670)
..-+-.-.
T Consensus 282 ~n~it~~~ 289 (933)
T KOG1274|consen 282 ANAITLIT 289 (933)
T ss_pred CCeeEEEe
Confidence 76554433
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=220.43 Aligned_cols=221 Identities=28% Similarity=0.461 Sum_probs=195.4
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC------
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------ 493 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~------ 493 (670)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+.||.+|++||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ---CCceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 494 ---~~~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
+.++++.+..|.-+|+.+...+. ..++++++.|.+|++||+..|..+..+. ....+.+++.+|-++.++.|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence 46788999999999999988754 4689999999999999999999888775 45779999999999999999999
Q ss_pred CeEEEEeCCCC----------------eeeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc
Q 005913 569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630 (670)
Q Consensus 569 g~I~iwDl~~~----------------~~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 630 (670)
|.|.+.++... ..+..+.+|.+ .|+|++.+-||.+|++|+.||.|+|||+.+.+
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q-------- 310 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ-------- 310 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--------
Confidence 99999987532 23455678887 99999999999999999999999999998864
Q ss_pred cCCcccccccccCCCCCCeEEEEEec
Q 005913 631 SGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
+++++.+..++|+.+.+.|
T Consensus 311 -------~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 311 -------CIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred -------HHHHHhhhccccceeEeec
Confidence 4556655677888888854
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.5e-25 Score=212.33 Aligned_cols=209 Identities=31% Similarity=0.535 Sum_probs=190.4
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
..+.+.||...|+.++.......+.++|.|.+-+||.++++.|+..|.||.+.|.++.|++.+..+++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 44567899999999999888888999999999999999999999999999999999999999999999999999999962
Q ss_pred C------C----------------------------------CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEE
Q 005913 493 D------R----------------------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532 (670)
Q Consensus 493 ~------~----------------------------------~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iw 532 (670)
. . ..|+..+.+|.+.|.+..|-..|..+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 0 01566788999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
|+.+|..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|++|+..|++..|..+. .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999843 4577899999999999998765 589999999
Q ss_pred cEEEEeCCCCc
Q 005913 612 TVKLWDVTTST 622 (670)
Q Consensus 612 ~I~iwd~~~~~ 622 (670)
+|+|||+.+..
T Consensus 379 TvKvWdLrNMR 389 (481)
T KOG0300|consen 379 TVKVWDLRNMR 389 (481)
T ss_pred eEEEeeecccc
Confidence 99999998754
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=228.30 Aligned_cols=252 Identities=23% Similarity=0.404 Sum_probs=214.0
Q ss_pred ceecCCCCCCceeE-EEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 331 RVHLSSAALPSVSF-YTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 331 ~~~l~~~~~ps~~~-~t~~~~~~~V~~-l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
.+++|......... ..+.++.+-|.+ +++-+ ++-.+++|+.|++|.+|.+..
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~------------------------- 90 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ------------------------- 90 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence 45666553333332 345667777777 77775 555699999999999999875
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v 487 (670)
...+..+.||...|.|++...++. +++||.|.++++|-. +++...+.+|+.+||.+..-|.+ .++|||.|++|
T Consensus 91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 346678999999999999887777 999999999999987 45566689999999999999988 89999999999
Q ss_pred EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
++|.- ++.+++|.+|..-|+.+++-+++ .+++++.||.|++|++ +|.++..+.+|..-|+++...+++..++++++
T Consensus 164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 99975 67889999999999999998764 5778889999999999 89999999999999999998889999999999
Q ss_pred CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
|++++||+.. .+.+.+.-....||++.+-++|. +++|++||.||||.....
T Consensus 240 DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 240 DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999999976 77788876677999999888876 778889999999998743
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.1e-25 Score=205.57 Aligned_cols=248 Identities=25% Similarity=0.445 Sum_probs=203.7
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..|.+.|..+...-.|++||++++|++|+|+.+..... ......+.||++||..+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------s~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------SKLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------ceeeeEecCCCCCeeEE
Confidence 34566677777777899999999999999999875211 24667899999999999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCC---cee
Q 005913 428 SFSP--LGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL 498 (670)
Q Consensus 428 ~~sp--~~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~---~~~ 498 (670)
+|.. .|.+|++|+.||.|.||.-..++- ...+..|...|++++|.|. |-.|++++.||.|.+.+.+.. ...
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 9976 789999999999999999887643 4556679999999999994 678999999999999998754 233
Q ss_pred EEecccCCCeeEEEEcCC---C-----------CEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCC---
Q 005913 499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG--- 559 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~---~-----------~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g--- 559 (670)
++...|.-.|++++|.|. | +.|++|+.|..|+||+..++. .-+.+.+|.+.|+.++|.|.-
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 456689999999999986 4 569999999999999998763 345588999999999999953
Q ss_pred -CEEEEEECCCeEEEEeCCCCe---eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 560 -RYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 560 -~~l~sg~~dg~I~iwDl~~~~---~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+||+++.||++.||-.+... ....+......+++++||..|++|+.++.|+.|.+|.-..
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 489999999999999876221 1122334567899999999999999999999999997544
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.4e-25 Score=231.47 Aligned_cols=224 Identities=28% Similarity=0.482 Sum_probs=200.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC--ceeEEec
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIMA 502 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~--~~~~~~~ 502 (670)
|.+++|++|+.||.|++|++.... .+..+..|...|.++....+++.|+++|.|-+|++|+.... -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 456789999999999999987543 35677889999999999999999999999999999999876 5778888
Q ss_pred ccCCCeeEEEE-cCCCCEEEEEEcCCcEEEEECCCCc--EEEE--------Ee-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 503 GHLSDVDCVRW-HINCNYIATGSSDKTVRLWDVSSGE--CVRI--------FI-GHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 503 ~~~~~v~~v~~-~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~--------~~-~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
.|...|.|+++ -++...+|+|+-|+.|.+||+.++. .+.. +. ++..+|++++.++.|..|++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 7888999999999999999999873 2222 22 78889999999999999999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
|++||.++++.+..++||+..|..+..++||+.++++|+||+|++||+... +++.++..|...|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVW 259 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------------ceeeeEEeccCceE
Confidence 999999999999999999999999999999999999999999999999764 45778888888999
Q ss_pred EEEEecCCcEEEEeeCCCC
Q 005913 651 SLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~dgs 669 (670)
++..+|+-..+.+|+.||.
T Consensus 260 aL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred EEeeCCCcceEEecCCCCc
Confidence 9999999999999999885
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-23 Score=202.50 Aligned_cols=248 Identities=22% Similarity=0.405 Sum_probs=197.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||... ..+..........|.+.|..+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence 35667799999999999999999999999999753 223355667788999999999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCC---------CCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCC
Q 005913 428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 428 ~~sp--~~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~ 494 (670)
.|.+ -|+.+|+||.|+++.||.-. ......++......|+++.|.| -|-.+|+++.||.+|||+.-.
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 9976 47899999999999999752 1223445666778899999999 688899999999999998643
Q ss_pred CceeE------Eec-------ccCCCeeEEEEcCC---CCEEEEEEcC-----CcEEEEECCCC----cEEEEEecCCCC
Q 005913 495 IQPLR------IMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM 549 (670)
Q Consensus 495 ~~~~~------~~~-------~~~~~v~~v~~~p~---~~~l~tgs~d-----g~I~iwd~~~~----~~~~~~~~h~~~ 549 (670)
.-.+. .+. .+.....|+.|+|. ..+|++|+.+ +.+.||....+ ..+..+.+|..+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 32211 111 35567889999974 4678888766 47888876533 245567799999
Q ss_pred eEEEEEcCC----CCEEEEEECCCeEEEEeCCCC--------------------eeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913 550 ILSLAMSPD----GRYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 550 I~~l~~sp~----g~~l~sg~~dg~I~iwDl~~~--------------------~~~~~~~~h~~~V~sl~~s~~g~~l~ 605 (670)
|+.|+|.|+ -..||+++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|.+|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 999999995 34799999999 999998731 23456778999999999999999999
Q ss_pred EEECCCcEEEEeCCC
Q 005913 606 SGSADCTVKLWDVTT 620 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~ 620 (670)
+.|.||+||+|...-
T Consensus 305 StGdDG~VRLWkany 319 (361)
T KOG2445|consen 305 STGDDGCVRLWKANY 319 (361)
T ss_pred ecCCCceeeehhhhh
Confidence 999999999997543
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.8e-24 Score=216.01 Aligned_cols=239 Identities=24% Similarity=0.438 Sum_probs=202.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.|...|.|++.|+||+|||+|+.|..|.||+..+ ...+..+.+|.+.|.+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence 7788899999999999999999999999999886 234455889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v 508 (670)
|-.....|+++|.|++|++|+++....+.++.+|...|.+|.-...++.+-+|+.|+++++|++.. ....++.+|.+.+
T Consensus 252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si 330 (479)
T KOG0299|consen 252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI 330 (479)
T ss_pred eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence 998888999999999999999999999999999999999999988888888888999999999943 3445677898999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cC-----------CCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GH-----------RSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h-----------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
.|++|- +...+++|+.+|.|.+|++.+.+++.+.. .| ...|++++..|...++++|+.+|.|++|-+
T Consensus 331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 999995 66789999999999999999988876653 11 227999999999999999999999999999
Q ss_pred CCC----eeeEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeC
Q 005913 577 ASG----RCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDV 618 (670)
Q Consensus 577 ~~~----~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~ 618 (670)
..+ .++..+. -.+.|++++|+++|..|++| +....+--|-.
T Consensus 410 ~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 410 EDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 877 3344443 56899999999999965555 44444444543
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.8e-23 Score=215.65 Aligned_cols=277 Identities=20% Similarity=0.296 Sum_probs=229.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec-CccCEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~ 428 (670)
...+|+|++||.+.+.||+|-.+|.|.||++... ......+.+ ....|-+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence 3568999999999999999999999999998741 112233333 457899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecccCC
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS 506 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~~ 506 (670)
|+ ++..|++.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.||.||.+..++...++.. +.+....+
T Consensus 77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 99 4667888889999999999999999999999999999999999999999999998888887766544 34455678
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
.|.+++|+|++..|++|+.||.|++||+.++..+..... ...-|.++.|-.+ ..|++|...|.|.+||...
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence 999999999999999999999999999999988763221 1223667777655 4899999999999999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
+..+..+..|.+.|.+++.++++++++++|.|+.|.-|...+.... +........|...|.+++..++
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc-
Confidence 9999999999999999999999999999999999999988776431 2223344567778999988887
Q ss_pred cEEEEeeCCC
Q 005913 659 LLFAAGALSK 668 (670)
Q Consensus 659 ~~La~gs~dg 668 (670)
.+.+|+.|.
T Consensus 303 -~l~sgG~d~ 311 (691)
T KOG2048|consen 303 -ALISGGRDF 311 (691)
T ss_pred -eEEecceee
Confidence 777777765
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.4e-23 Score=198.18 Aligned_cols=257 Identities=22% Similarity=0.377 Sum_probs=213.5
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
.++|.+..-+. +..+....+-+|..++|-...+.+..++. |.+||.-++.+
T Consensus 37 sl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-------------------------- 89 (311)
T KOG1446|consen 37 SLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-------------------------- 89 (311)
T ss_pred eEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--------------------------
Confidence 45555443332 23345556668999999877777777766 88899999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
.+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+.....+| ++|.|.|-+||++.....|+
T Consensus 90 --NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 90 --NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIK 165 (311)
T ss_pred --CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEE
Confidence 45788899999999999999999999999999999999999888887777655555 78999999999999888999
Q ss_pred EEECCCC--ceeEEecc---cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCe---EEEEEcCCCC
Q 005913 489 IWSMDRI--QPLRIMAG---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPDGR 560 (670)
Q Consensus 489 lwd~~~~--~~~~~~~~---~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I---~~l~~sp~g~ 560 (670)
+||++.. .|...+.- .....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...- -..+|+|||+
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9999853 45555543 36778999999999999999999999999999999999988776543 5778999999
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++++|+.||+|.+|++.+|..+..+++ +.+++.++.|+|.-.++++++ ..+.+|=...
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 999999999999999999999999998 689999999999877777664 4688886543
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-24 Score=231.93 Aligned_cols=283 Identities=18% Similarity=0.314 Sum_probs=221.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
....+++...++-..++++ ....++||.+........... ....-+.-.-.+..+.|+
T Consensus 39 k~~~nAIs~nr~~~qiv~A-Grs~lklyai~~~~~~~~~~~---------------------~~k~kqn~~~S~~DVkW~ 96 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVA-GRSLLKLYAINPNDFSEKCNH---------------------RFKTKQNKFYSAADVKWG 96 (839)
T ss_pred ccccceEeecCCcceeEEe-cccceeeEeeCcccCCcceee---------------------ecccccceeeehhhcccc
Confidence 4567788888988888877 456788888764211100000 000000111234567776
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 431 P-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 431 p-~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
. +.++|++++..|.|.+||+.. ...+..|..|...+.++.|++ ...++++||.||+|++||++..+....+.+..
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence 4 357899999999999999987 455678899999999999999 56789999999999999999998888898888
Q ss_pred CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 506 ~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
..|+.|+|+| .+++++++...|.+++||+|. .++...+..|.++|.|+.|+|++.+|||||.|+.|+|||+.+++.-.
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999999998 478899999999999999985 46778899999999999999999999999999999999998765433
Q ss_pred EeeCCC-cceEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec-CC
Q 005913 584 PLMGHT-SCVWTLAYSCEGS-LLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RN 658 (670)
Q Consensus 584 ~~~~h~-~~V~sl~~s~~g~-~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~-~~ 658 (670)
...-++ .+|.++.|-|+.. .|++++ .|-.|+|||+..... +..++..|...++.++|.. +-
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--------------P~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--------------PYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--------------cceeeeccCccccceeccCCCc
Confidence 333333 6899999999765 566665 577899999987642 3457778888899999965 55
Q ss_pred cEEEEeeCCCC
Q 005913 659 LLFAAGALSKT 669 (670)
Q Consensus 659 ~~La~gs~dgs 669 (670)
.+|-+++.||+
T Consensus 323 ~~l~s~sKD~t 333 (839)
T KOG0269|consen 323 INLWSCSKDGT 333 (839)
T ss_pred eeeEeecCccH
Confidence 67788888875
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=201.83 Aligned_cols=240 Identities=25% Similarity=0.355 Sum_probs=197.8
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS 491 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd 491 (670)
-..|...|..+...--|..|++||.|++|+|+.++... .+..+.||.+|||.++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 45688888887777779999999999999999998654 4678899999999999976 899999999999999999
Q ss_pred CCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCC---C--
Q 005913 492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G-- 559 (670)
Q Consensus 492 ~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~---g-- 559 (670)
-.+++ .......|...|++++|.|. |-.|+++++||.|.+.+.++. ...+....|.-.|++++|.|- |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88774 33455689999999999886 568999999999999988754 233456689999999999995 5
Q ss_pred ---------CEEEEEECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEEEeCCCCccc
Q 005913 560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 560 ---------~~l~sg~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+.|++|+.|..|+||+..++. .-..+.+|+..|..++|.|.- ..|++|+.||+|.||-.......
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999998763 334588999999999999954 48999999999999987743221
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
-. ...+.....+++.++||..|.+|++++.|+
T Consensus 247 ---------wk---~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 247 ---------WK---KTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred ---------cc---ccccccCCcceEEEEEeccccEEEEecCCc
Confidence 11 123334567899999999999999988775
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=221.63 Aligned_cols=324 Identities=15% Similarity=0.208 Sum_probs=246.8
Q ss_pred cceecCCCCCC--ceeEEEeecCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCCcccccc--CCC-
Q 005913 330 NRVHLSSAALP--SVSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQ- 393 (670)
Q Consensus 330 ~~~~l~~~~~p--s~~~~t~~~~~~~V~~l~fs~d-----------~~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~- 393 (670)
..+|+|+..-+ ...++.++-|...|+.+.--|. ...+.+++.|++||+|++.......+.. ...
T Consensus 346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~ 425 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA 425 (1080)
T ss_pred ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence 46778865433 3345677778888888776551 1247899999999999998622111100 000
Q ss_pred ---CCCCCCCCccccC---CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe
Q 005913 394 ---GENDTTPREDIIG---PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW 467 (670)
Q Consensus 394 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~ 467 (670)
..........++. .....+.....-+....+.+++.+|+|++|++|..-|++++|++...+....+..|...|.
T Consensus 426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil 505 (1080)
T KOG1408|consen 426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL 505 (1080)
T ss_pred hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence 0000000000000 0001111222334556899999999999999999999999999999888888999999999
Q ss_pred EEEEec---CCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEE
Q 005913 468 DVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVR 541 (670)
Q Consensus 468 ~l~~sp---~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~ 541 (670)
|+.|+. ....||+++.|+-|++||+.. ..++..+.+|.+.|+++.|--+| ..+++++.|+.|.+--.+.....+
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 999986 457899999999999999864 45677889999999999998877 678889999887654433322333
Q ss_pred EEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC---CCcceEEEEEcCCCCEEEEEECCCcE
Q 005913 542 IFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 542 ~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
.|..| ...++.++..|..+++++++.|..|+|||+.+|+..+.|++ |.+....+...|.|.||++.+.|.++
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 34333 24689999999999999999999999999999999999874 66788899999999999999999999
Q ss_pred EEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 614 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.++|+.+++ ++....+|...|+.+.|++|-+.|++.+.||
T Consensus 666 ~~~Df~sgE---------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 666 CFVDFVSGE---------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGDG 705 (1080)
T ss_pred EEEEeccch---------------hhhhhcCcchheeeeeecccchhheeecCCc
Confidence 999999975 5778889999999999999999999998887
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.4e-25 Score=236.69 Aligned_cols=237 Identities=26% Similarity=0.501 Sum_probs=217.8
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+..|...|.|+..-..++.+++|+.|-.+-+|.+... .....+.+|..+|-+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------NAITSLTGHESPIES 75 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------chhheeeccCCccee
Confidence 4456667888888667889999999999999987641 122348899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~ 506 (670)
+.|+++..+|++|+.+|+|++||+.....++++.+|...+.++.|+|.+.|+++|+.|+.+.+||++...+...+.+|..
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.|.++.|+|+|.+++.|+.|.+++|||...|+....|.+|.+.+.++.|+|..-.+++|+.|+++++||+++...+....
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCcceEEEEEcCCCCEEEEEECCC
Q 005913 587 GHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 587 ~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
.....|.++.|+|++..+.+|....
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccCCceeeeecCCceeeecCchhh
Confidence 7888999999999999988886553
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-24 Score=214.95 Aligned_cols=242 Identities=19% Similarity=0.307 Sum_probs=204.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
-.+.|.|++-+|+|.+|+.|+..|.|.+|.+.+ +.....+.+|-.+|+|+.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF 131 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence 357899999999999999999999999999986 3455667889999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC---------CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCcee
Q 005913 430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
+-||.+|+|||.||.|.+|.+. +-.....+..|+-+|+++...+. ..+++|+|.|+++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999864 23467888999999999998774 568999999999999999999888
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC----------------cEEEEEecCCC--CeEEEEEcCCCC
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----------------ECVRIFIGHRS--MILSLAMSPDGR 560 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----------------~~~~~~~~h~~--~I~~l~~sp~g~ 560 (670)
..+. ....+.+++..|-+..+++|+.+|.|.+.++.+. ..+..+.+|.+ +|+|++++-||.
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 7776 5578999999999999999999999999887432 34567789988 999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE-EECCCcEEEEeCCC
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTT 620 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~ 620 (670)
.|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+-.+. -...-.+-.|++..
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 9999999999999999999999988767799999999664332332 23334455565543
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=231.42 Aligned_cols=245 Identities=22% Similarity=0.395 Sum_probs=203.9
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 354 V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
+..+.|+. +.++||+++..|.|.+||+... ........+..|...|.++.|++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------------------------~rnk~l~~f~EH~Rs~~~ldfh~t 144 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS-------------------------IRNKLLTVFNEHERSANKLDFHST 144 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc-------------------------ccchhhhHhhhhccceeeeeeccC
Confidence 45567764 5889999999999999999852 123455678899999999999986
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCee
Q 005913 433 G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD 509 (670)
Q Consensus 433 ~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~ 509 (670)
. .+|++||.||+|++||++......++.+....|.+|.|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 5 5788999999999999999999999999899999999999 6788999999999999999875 45677889999999
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEeCCCC-eeeEE
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP 584 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~sg~--~dg~I~iwDl~~~-~~~~~ 584 (670)
|+.|||++.+||||+.|++|+|||+.+++...... ....++.++.|-|... .|++++ .|-.|+|||++.. -+..+
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 99999999999999999999999998665433332 2347899999999765 466554 6788999999754 45577
Q ss_pred eeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913 585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 585 ~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+..|+..++.++|.. |...+.+++.||+|..-.++....
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 889999999999965 556899999999988776665543
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.8e-23 Score=199.38 Aligned_cols=267 Identities=19% Similarity=0.330 Sum_probs=201.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
-.|+.||+.|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|++++||++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------~~iar~lsaH~~pi~sl~WS~dg 77 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------FRIARMLSAHVRPITSLCWSRDG 77 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc----------------------------cchhhhhhccccceeEEEecCCC
Confidence 88999999999999999999999999986 23445678999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecccC----CCe
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHL----SDV 508 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~----~~v 508 (670)
+.|+++|.|..|.+||+..+.++..+. ...+||.+.|+|.... +++.-.+....+.++..+.....-.... ...
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 999999999999999999999888877 5789999999995443 3333344456666665422211111111 123
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-------e
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASG-------R 580 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-------~ 580 (670)
.+..|++.|+|+++|+..|.+.++|..+-+++..++-.. ..|.++.++..|++|+..+.|..|+.|++..- .
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 345689999999999999999999999999998887666 78999999999999999999999999998621 1
Q ss_pred e--eEEeeC--CCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCccccccccccCCcccccccccCCCC-CCeEEEEE
Q 005913 581 C--VTPLMG--HTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS-TPVYSLQF 654 (670)
Q Consensus 581 ~--~~~~~~--h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~f 654 (670)
+ .+.++. ....=.+++||.+|.+++.|+.. ..++||.-..+.. ++.+.+.. .....+.|
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL---------------VKILhG~kgE~l~DV~w 301 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL---------------VKILHGTKGEELLDVNW 301 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce---------------eeeecCCchhheeeccc
Confidence 1 111111 11233568899999999888743 6799999887753 33443333 45666677
Q ss_pred ecCCcEEEEe
Q 005913 655 SRRNLLFAAG 664 (670)
Q Consensus 655 s~~~~~La~g 664 (670)
+|-..++++-
T Consensus 302 hp~rp~i~si 311 (405)
T KOG1273|consen 302 HPVRPIIASI 311 (405)
T ss_pred ccceeeeeec
Confidence 7766655544
No 124
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=9e-24 Score=221.96 Aligned_cols=246 Identities=23% Similarity=0.412 Sum_probs=212.8
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
..+...++.|++.||+|++||+|..-|.++||++... ........|...|.|
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------------~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------------EYTCFMEAHESEILC 506 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhh----------------------------hhhhheecccceeEE
Confidence 3456678999999999999999999999999999852 244456789999999
Q ss_pred EEEcCC---CCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCC--CEEEEEECCCcEEEEECCCCceeEE
Q 005913 427 ASFSPL---GDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 427 l~~sp~---~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g--~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
+.|+.. .++|++++.|..|++||+... ..+.++.+|...|+++.|...| ..+++++.|+.+.+-........+.
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 999863 358999999999999998754 4567889999999999999877 6799999998876655443333344
Q ss_pred eccc-----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 501 MAGH-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 501 ~~~~-----~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
+..| ...+..|+..|+.+++++++.|+.|+|||+.+|+.++.|.+ |.+....+...|.|.||++.+.|.++.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 4333 24578899999999999999999999999999999999975 556788899999999999999999999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++|..+|+++.++.+|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999999999999999875
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=5.3e-23 Score=216.59 Aligned_cols=314 Identities=24% Similarity=0.362 Sum_probs=233.7
Q ss_pred EEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC----Cccceee
Q 005913 344 FYTFINTHNGLNCASISQDG---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG----RKRSYTL 416 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 416 (670)
...+.+|.+-|.+++|..-+ -+||+|++|.+||||.+........... ........+...+.... ....-..
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~-e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER-EDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc-ccccccccCCceeeeeeeEEEEEehhhh
Confidence 34567888999999998644 4899999999999999864321110000 00000000000000000 0011134
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EE---eeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VC---YKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~---~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l 489 (670)
+.||...|+++.|+|.+..|+++|.|.++.+|......-+ .. ..+.....++..|+|++..+++-+..|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 5699999999999999999999999999999987755322 11 2234556899999999999999999999999
Q ss_pred EECCCC---ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------------------------------
Q 005913 490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------------------------ 536 (670)
Q Consensus 490 wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------------------------ 536 (670)
|..... .+...+.||...|..++|+|.|.+|++.+.|.+-|++-.-.
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983321 23445679999999999999999999999998888864310
Q ss_pred -----CcEEEEE--------------------------------------------------------------------
Q 005913 537 -----GECVRIF-------------------------------------------------------------------- 543 (670)
Q Consensus 537 -----~~~~~~~-------------------------------------------------------------------- 543 (670)
.+.++.|
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 0011111
Q ss_pred -------------------ecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 544 -------------------IGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 544 -------------------~~h~~~I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
.||...|++++.+|+|+++|+++.. ..|++|+..+...+..+.+|+-.|+.++|||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 1788899999999999999998754 4699999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 600 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
||++|++.|.|.++.+|......... ........|..-|.++.|+|++.++|++|.|++
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e-----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDE-----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchh-----------hhhccccccceEEEEcccCcccceeEEecCCce
Confidence 99999999999999999985543211 113346778889999999999999999999975
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-22 Score=194.36 Aligned_cols=291 Identities=22% Similarity=0.370 Sum_probs=212.8
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 349 ~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.|.++|+++.+.+ .|+++++|+.||.|.+||++....... +.+..............+|.-.|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-------------s~li~k~~c~v~~~h~~~Hky~iss~ 107 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-------------SGLIAKHKCIVAKQHENGHKYAISSA 107 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-------------ccceeheeeeccccCCccceeeeeee
Confidence 4668899999987 599999999999999999986321100 00000000000111235788999999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 428 SFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 428 ~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
.|-|-.. .+.++|.|.++++||.++.+....|+- .+.|.+-+|+|- ...+|+|..|-.|++.|+..+....++.|
T Consensus 108 ~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 108 IWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred EEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 9999554 778899999999999999988888874 567889999983 34678888889999999999999999999
Q ss_pred cCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCC-cEEEEEe--------------cCCCCeEEEEEcCCCCEEEEEEC
Q 005913 504 HLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIFI--------------GHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~-~~~~~~~--------------~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
|...|.++.|+|...+ |++|+.||.|++||++.. .|.+.+. .|.+.+..++|+.+|.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999999999998876 567999999999999864 4444443 56678999999999999999999
Q ss_pred CCeEEEEeCCCCeee-EEee--CCCc---ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913 568 DGTIMMWDLASGRCV-TPLM--GHTS---CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 568 dg~I~iwDl~~~~~~-~~~~--~h~~---~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
|..+++|+..+|+-- ..+- .|.. .-..+. +.+...++---.++++.++++-.+.. +..
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~---------------ir~ 330 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF---------------VRR 330 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE---------------EEe
Confidence 999999999887532 1110 1111 111122 33444455555567777777766542 445
Q ss_pred cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 642 LPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+.+|...|.+..|.|+=+-+.+|..|++
T Consensus 331 l~~h~k~i~c~~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 331 LSTHLKRINCAAYRPDFEQCFTGDMNGN 358 (397)
T ss_pred eecccceeeEEeecCchhhhhccccCCc
Confidence 5566667888888887777777777664
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=7.2e-24 Score=215.05 Aligned_cols=259 Identities=20% Similarity=0.312 Sum_probs=215.5
Q ss_pred ceecCCCCCC----ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 331 RVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 331 ~~~l~~~~~p----s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
.+++|+..-| .+..+-.++..+-|.++.++|||+.|++|+.-.++.|||+......
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-------------------- 500 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-------------------- 500 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence 4556655433 1122233455667999999999999999999999999999752211
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
....+..-.-.+++++.+||.+..++|+.||.|.|||+.....+..+++|...+.||..+++|..|.+|+-|.+
T Consensus 501 ------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 501 ------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred ------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 11112223356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
||.||++.+..+.... ..+.|.++.++|++.++++|-.++.+.+.... +.....+.-|...|.++.|++.|+++++.+
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence 9999999887665443 45789999999999999999999999998865 334445667899999999999999999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
.|+.+..|...-|..+.... ..++|.++..|.|.++|+||+.|....||.+
T Consensus 653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999998887654 4568999999999999999999998888875
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.2e-23 Score=211.67 Aligned_cols=295 Identities=19% Similarity=0.323 Sum_probs=232.4
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
..|..|-+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.+.. +++..
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR----------------------------cvr~~ 438 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR----------------------------CVRTV 438 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce----------------------------EEEEE
Confidence 56888888999999999999999999999999999999999998733 22222
Q ss_pred ecCccCEEEEEEcCCCCE--EEEEeCCCeEEEEeCCCC-------------------------------------ceeEE
Q 005913 418 QGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLN-------------------------------------ANLVC 458 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~--L~s~s~Dg~I~lwd~~~~-------------------------------------~~~~~ 458 (670)
. ..+.|.|++|+|.++. ||++- ...+.|.+..-+ .-++.
T Consensus 439 ~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~ 516 (733)
T KOG0650|consen 439 Q-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI 516 (733)
T ss_pred e-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence 2 3358999999997763 33333 333444332111 01223
Q ss_pred eeCCCccEeEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q 005913 459 YKGHNYPVWDVQFNPQGHYFASSSHD---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (670)
Q Consensus 459 ~~~h~~~V~~l~~sp~g~~l~s~s~d---g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~ 535 (670)
.-.|..+|..+.|+..|.||++.+.+ ..|.|.++.......-|....+.|.++.|||...+|++++ ...|++||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence 33578889999999999999998754 5789999987766666666678899999999999999986 5689999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 536 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
.+..+..+......|..++++|.|..|+.|+.|+.+..||+.-+ ++.++++.|...|++++|++.-.++++|+.||++.
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 88877777777788999999999999999999999999999754 67788889999999999999999999999999999
Q ss_pred EEeCCCCccccccccccCCcccccccccCCCCCC----eEEEEEecCCcEEEEeeCCCC
Q 005913 615 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP----VYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 615 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----V~~l~fs~~~~~La~gs~dgs 669 (670)
|+.-.--..... ...+.++..+++|... |..+.|+|...+|.+++.||+
T Consensus 676 Vfhg~VY~Dl~q------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 676 VFHGMVYNDLLQ------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred EEeeeeehhhhc------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCce
Confidence 987433221111 1123345666676554 999999999999999999986
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.4e-23 Score=207.55 Aligned_cols=262 Identities=19% Similarity=0.270 Sum_probs=195.6
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC--CCCccceeeeecCccCE
Q 005913 354 LNCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP--NGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 354 V~~l~fs~-------d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V 424 (670)
-.|++|-. -|+++|+|+.|..|.|||+.-.........+. ...+. .........-.+|+..|
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------s~~sk~~~k~~k~~~~~~gHTdav 246 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------SKASKKKKKKGKRSNSASGHTDAV 246 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeec---------hhhhhhhhhhcccccccccchHHH
Confidence 35777743 37899999999999999987422111000000 00000 00111222345799999
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 425 YSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 425 ~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.+++|+..-+ .|++||.|.+|++||+.++++...+..|+..|.++.|+| ...++++|+.|++|.+.|++........-
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 9999987654 788999999999999999999999999999999999999 57789999999999999998543333223
Q ss_pred ccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCC
Q 005913 503 GHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~ 579 (670)
...+.|..++|+|.. +.+++++.||+|+-+|+|+. +++.++..|.++|.++++++. -.+++|++.|+.+++|++...
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 355789999999865 57788889999999999965 999999999999999999985 457889999999999998644
Q ss_pred ee--eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccc
Q 005913 580 RC--VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 580 ~~--~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.. +..-.-.-+...|.++.|+- -+++.||..+.++|||+.+....
T Consensus 407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 33 21111112345666777754 46888888889999999886543
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.2e-21 Score=200.98 Aligned_cols=260 Identities=14% Similarity=0.144 Sum_probs=190.7
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..+++|+..... +..++ .....+.+++|+|+++.+ ++++.++.|++||..+..
T Consensus 11 ~~v~~~d~~t~~-~~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------ 64 (300)
T TIGR03866 11 NTISVIDTATLE-VTRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------ 64 (300)
T ss_pred CEEEEEECCCCc-eEEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence 356666543332 22233 334557889999999976 567788999999986521
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-c
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-~ 486 (670)
....+..+. .+..++|+|+++.++++ +.++.|++||+.+...+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus 65 ----~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 65 ----VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred ----EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence 111222232 24678999999977654 5689999999998777766653 33468899999999999988775 5
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCC-------CCeEEEEEcCC
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPD 558 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~-------~~I~~l~~sp~ 558 (670)
+.+||..+++....+.. ...+.+++|+|+++++++++ .++.|++||+.+++.+..+..+. .....++|+|+
T Consensus 139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 67789988776655432 24567899999999886554 58999999999998877664321 12356889999
Q ss_pred CCEEEE-EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcc
Q 005913 559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK 623 (670)
Q Consensus 559 g~~l~s-g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~ 623 (670)
|+++++ .+.++.|.+||+.+++.+..+. +...+.+++|+|+|.+|+++ +.+|.|+|||+.++..
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 998655 4567789999999888776553 44578999999999999886 4689999999998654
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=7.1e-23 Score=201.92 Aligned_cols=254 Identities=21% Similarity=0.383 Sum_probs=194.3
Q ss_pred eeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceeEEeeCCCccEeEEEEecC-
Q 005913 414 YTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKL----------------NANLVCYKGHNYPVWDVQFNPQ- 474 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~----------------~~~~~~~~~h~~~V~~l~~sp~- 474 (670)
-....+|.+.+..+.-++-++ +.++-+..|.|+||++.. .+.+.++.+|...-..++|||-
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 344567888888888877654 555667889999999752 3457788899999999999992
Q ss_pred CCEEEEEECCCcEEEEECCCCcee---EEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCC---cEEEEEecCC
Q 005913 475 GHYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG---ECVRIFIGHR 547 (670)
Q Consensus 475 g~~l~s~s~dg~v~lwd~~~~~~~---~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~ 547 (670)
...+++|..-+.|++|...++.-. +.+.+|...|..++|+|.. +.|++|+.||+|+|||+|.+ .++.+ ..|.
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~ 302 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN 302 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC
Confidence 234888888889999998776432 3466899999999999965 57889999999999999988 44444 7899
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---CeeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+.|..|.|+.+-.+||+|+.||+++|||+++ ++++..+..|..+|+++.|+| +...|+++|.|..|.|||+.....
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999999888999999999999999984 578899999999999999999 456889999999999999976443
Q ss_pred ccccccc--cC-CcccccccccCCCCCCeEEEEEecCC-cEEEEeeCCC
Q 005913 624 VLKTEEK--SG-TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSK 668 (670)
Q Consensus 624 ~~~~~~~--~~-~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs~dg 668 (670)
....... .+ ...+.++......+..|-.|+|++.. -++++.+.||
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 2111110 00 11112222333345578899999974 4556655555
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-22 Score=193.17 Aligned_cols=267 Identities=15% Similarity=0.254 Sum_probs=214.6
Q ss_pred EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeE
Q 005913 366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTI 445 (670)
Q Consensus 366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I 445 (670)
+++|+....|.=+++........ .. ..........+..|.+++++++.+ +.++++||.|-+|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~---------~s-------~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI 65 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCT---------DS-------VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETI 65 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccc---------cc-------cceeeeccccccccccceeEEEec--ceeEeccCCCCcE
Confidence 67788877777777654220000 00 001122345577899999999998 8999999999999
Q ss_pred EEEeCCCCceeEEeeCCCccEeEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEE
Q 005913 446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523 (670)
Q Consensus 446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg 523 (670)
+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+......+..+++|.+.|+.++.||.++.-++.
T Consensus 66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEE
Confidence 9999999999999999999999999999765 89999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCE
Q 005913 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL 603 (670)
Q Consensus 524 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~ 603 (670)
+.|+.+++||+-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|- ++..
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE 221 (362)
T ss_pred cCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence 9999999999998876554432 2234459999999999888765 5899999887766555432 456667765 6778
Q ss_pred EEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE--ecCCcEEEEeeCCCC
Q 005913 604 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF--SRRNLLFAAGALSKT 669 (670)
Q Consensus 604 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f--s~~~~~La~gs~dgs 669 (670)
|++|+.|+.|.+||.+... +...+..|...|-++.+ .|.+.+|++++.||.
T Consensus 222 L~vG~d~~~i~~~D~ds~~---------------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDT---------------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred EEEecCCceEEEeccCCCc---------------cceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 9999999999999988743 35567788889999884 456889999999984
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=5.2e-21 Score=198.21 Aligned_cols=258 Identities=13% Similarity=0.114 Sum_probs=192.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE-EEEeC
Q 005913 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA 441 (670)
Q Consensus 363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~ 441 (670)
++++++++.|+.|++||+.+. .....+.++. .+.+++|+|++..+ ++++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~ 51 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD 51 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence 357889999999999998642 1233344443 36789999999976 56778
Q ss_pred CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 520 (670)
++.|++||+.+++....+..+.. +..+.|+|+++.++++ +.++.+++||+.+.+.+..+.. ...+.+++|+|+++++
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 89999999998887776665543 5678999999877655 5689999999998877776653 3457889999999999
Q ss_pred EEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEeeCCC-----c--c
Q 005913 521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHT-----S--C 591 (670)
Q Consensus 521 ~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~~~h~-----~--~ 591 (670)
++++.++ .+.+||..+++....... ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+. . .
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 9988765 567789988877665433 3456789999999988654 469999999999998877664321 1 2
Q ss_pred eEEEEEcCCCCEEEE-EECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee-CCC
Q 005913 592 VWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA-LSK 668 (670)
Q Consensus 592 V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs-~dg 668 (670)
...++|+|+++++++ .+.++.|.+||+.+.... ... .....+.+++|+|+|..|++++ .+|
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~---------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL---------------DYL-LVGQRVWQLAFTPDEKYLLTTNGVSN 271 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE---------------EEE-EeCCCcceEEECCCCCEEEEEcCCCC
Confidence 346889999998554 455778999998765421 111 1234688999999999988764 344
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=205.79 Aligned_cols=234 Identities=21% Similarity=0.314 Sum_probs=202.4
Q ss_pred eeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
..+.||...|+|++=+|.. ..+++|+.||.|+|||+....+...++.|.+.|.++++.. ..++++|.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4467999999999999987 6799999999999999999999999999999999999986 679999999999999988
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIM 572 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~ 572 (670)
.. +.+++.+. +.+..+.-+..++.++|++. .|.|||.....++..+.-....|.++.|+|.. ..|++|+.|+.|.
T Consensus 138 ~~-p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 GP-PLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred CC-cceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 64 77777643 56777777777788888865 49999999999999998777889999999965 4677788999999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
+||++++.+++.+.- ...-..++|+|++-.+++|+.|..++.||+.... .++..+..|.+.|.+|
T Consensus 214 LyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------------~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------------RPLNVHKDHVSAVMDV 278 (433)
T ss_pred EEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc--------------ccchhhcccceeEEEe
Confidence 999999998876532 2234679999988899999999999999998754 3466788999999999
Q ss_pred EEecCCcEEEEeeCCCC
Q 005913 653 QFSRRNLLFAAGALSKT 669 (670)
Q Consensus 653 ~fs~~~~~La~gs~dgs 669 (670)
.|||.|+=+++||+|.|
T Consensus 279 dfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ccCCCcchhccccccce
Confidence 99999999999999986
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=198.19 Aligned_cols=256 Identities=27% Similarity=0.437 Sum_probs=193.4
Q ss_pred ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 348 INTHNGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 348 ~~~~~~V~~l~fs~--d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
..|.+.++-+.-++ +..+.|+=+..|.|+||++...-.... ...........+.+.++.+|.+.=+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~------------~~~~~~~~s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS------------EPGLEVKDSEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc------------CccccccccccCceEEecccCccce
Confidence 44555666666555 345566667889999999875211110 0111112245667888999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee---EEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc--ee
Q 005913 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL 498 (670)
Q Consensus 426 ~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~--~~ 498 (670)
+++|||-.. .|++|..-+.|++|...++.-. ..+.+|+..|-+++||| ....|++||.||+|+|||++.+. +.
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 999999443 4788877788999999887543 34678999999999999 45689999999999999999872 22
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEE
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW 574 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iw 574 (670)
...+.|.+.|+.|.|+....+|++|+.||+++|||+++ ++++..|.-|..+|++|.|+|. ...|++++.|..|.+|
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 33478999999999999888999999999999999984 6788999999999999999994 5688889999999999
Q ss_pred eCCCCee----------------eEEeeCCC--cceEEEEEcCC-CCEEEEEECCCcEEEE
Q 005913 575 DLASGRC----------------VTPLMGHT--SCVWTLAYSCE-GSLLASGSADCTVKLW 616 (670)
Q Consensus 575 Dl~~~~~----------------~~~~~~h~--~~V~sl~~s~~-g~~l~sgs~Dg~I~iw 616 (670)
|+....- .+-+.-|. ..|..+.|++. ..+|++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9863211 11122343 46778899985 45788888887 4444
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=188.75 Aligned_cols=286 Identities=21% Similarity=0.318 Sum_probs=215.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS- 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s- 430 (670)
+-...+.|||||..|++-+.|..+++|++.......... . +.........-......|+..+|-
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~-----------~----~~~~~~~~~~r~~eg~tvydy~wYs 114 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD-----------G----PLNFSKHLSYRYQEGETVYDYCWYS 114 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCC-----------C----ccccccceeEEeccCCEEEEEEeee
Confidence 346678999999999999999999999986421110000 0 000011111222344678888886
Q ss_pred ------CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CC---ccEeEEEEecCCCEEEEEECCCcEEEEECC-CCcee
Q 005913 431 ------PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HN---YPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPL 498 (670)
Q Consensus 431 ------p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~---~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~ 498 (670)
|+..++++.+.+.-|++||.-+++....|.+ |. ....+++|+|||.+|++|. .+.|+++|+. .+.-.
T Consensus 115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC 193 (406)
T ss_pred ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCC
Confidence 5678999999999999999999998877765 22 2456899999999998775 5899999994 33322
Q ss_pred --EEe-----cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 005913 499 --RIM-----AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG 569 (670)
Q Consensus 499 --~~~-----~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg 569 (670)
... .+..+-+.|++|+|-. ..+++|+-..++-||.-..+.++..+-+|.+.|+.++|.++|+.|++|. .|-
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence 111 1335678999999954 5899999999999998888999999999999999999999999999987 477
Q ss_pred eEEEEeCCCC-eeeEEeeCCCc-ceEE--EEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 570 TIMMWDLASG-RCVTPLMGHTS-CVWT--LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 570 ~I~iwDl~~~-~~~~~~~~h~~-~V~s--l~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
.|..||++.. .++..+..|.+ .=.. ....|+|++|++|+.||.|++||++.... .+..+..+
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--------------~~sv~~~~ 339 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--------------EVSVTGNY 339 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------------cccccccc
Confidence 8999999854 56667777765 2223 44578999999999999999999988432 24455667
Q ss_pred CCCeEEEEEecCCcEEEEeeCC
Q 005913 646 STPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~gs~d 667 (670)
..-|..|+++|--.++|+++-.
T Consensus 340 sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccceecCcccceeeeccCc
Confidence 7789999999998888887643
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.4e-20 Score=191.67 Aligned_cols=231 Identities=21% Similarity=0.414 Sum_probs=188.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
.-|.|++|.++|. +++|.++|.|.||+..+ .+..+....|.+.|++++...
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~----------------------------~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGT----------------------------NRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCC----------------------------ceEEeEeeecCCceEEEEEec
Confidence 4599999999987 67899999999999753 223333448999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc----------------------------------------eeEEeeCCCccEeEEEE
Q 005913 432 LGDFILSSSADTTIRLWSTKLNA----------------------------------------NLVCYKGHNYPVWDVQF 471 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~----------------------------------------~~~~~~~h~~~V~~l~~ 471 (670)
+|.+|- |+.|..|..||-.-.+ -.....+|....|.++.
T Consensus 298 ~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 887555 9999999999832000 00123468888999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE
Q 005913 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551 (670)
Q Consensus 472 sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~ 551 (670)
+|+...+++++.|+.+++|+ ..+++.... ...++.|+.|||.| .++.|+..|...+.|..+...+..-.. ..+++
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 99999999999999999999 444544433 45789999999999 999999999999999999777765555 88999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 552 SLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
+++|+|+|.+||.|+.|+.|++|-+.. |+....... |.++|+.+.||+|+++|.+-+.|-.|-.|.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999999999999999998864 444444332 338999999999999999999999999994
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=189.01 Aligned_cols=243 Identities=23% Similarity=0.322 Sum_probs=181.8
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--E--eeCCCccEeEEEEecCCCEEEEEE-CCCcEEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--C--YKGHNYPVWDVQFNPQGHYFASSS-HDRTARI 489 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~--~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~l 489 (670)
..+++|.+.|++++|+.||++|++++.|++|++|+++...... . ..-.....+.+.|+||..-+++.. ...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3478999999999999999999999999999999998643211 0 111122457899999887766655 4558999
Q ss_pred EECCCCc---e-e--------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913 490 WSMDRIQ---P-L--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (670)
Q Consensus 490 wd~~~~~---~-~--------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 557 (670)
|.+...+ . . ..-..|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9764321 1 1 1112355566667777788999999999999999998 888888877777788899999
Q ss_pred CCCEEEEEECCCeEEEEeCC---CC-----eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913 558 DGRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (670)
Q Consensus 558 ~g~~l~sg~~dg~I~iwDl~---~~-----~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 629 (670)
+|+++++++..--|++|..- .| ..+..+.+|.+.|..++||+++..+++.+.||+++|||++-.....+.
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD-- 316 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD-- 316 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC--
Confidence 99999999999999999873 22 345678899999999999999999999999999999998754321111
Q ss_pred ccCCccccccccc----CCCCCCeEEEEEecCCcEEEEeeC
Q 005913 630 KSGTNRLRSLKTL----PTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 630 ~~~~~~~~~~~~~----~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
+..+... ....+.-..++.+|.|..||++..
T Consensus 317 ------pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 317 ------PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred ------chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC
Confidence 1112211 122223338999999999987643
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.4e-21 Score=186.74 Aligned_cols=252 Identities=17% Similarity=0.317 Sum_probs=196.4
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw 490 (670)
-.+|..-|.++.|.+.|+.+++|+.|++|+|||.+. ..+....+.|.+.|+.+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 347889999999999999999999999999999653 345667788999999999976 69999999999999999
Q ss_pred ECCC---------CceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc------EEEEEe-------cC
Q 005913 491 SMDR---------IQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE------CVRIFI-------GH 546 (670)
Q Consensus 491 d~~~---------~~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~------~~~~~~-------~h 546 (670)
.-.. -....++....+.|..|.|.|. |-.+++++.||.+|||+.-..- ....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1123455667789999999984 6689999999999999875432 222222 35
Q ss_pred CCCeEEEEEcC---CCCEEEEEECC-----CeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCCC----CEEEEEECC
Q 005913 547 RSMILSLAMSP---DGRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEG----SLLASGSAD 610 (670)
Q Consensus 547 ~~~I~~l~~sp---~g~~l~sg~~d-----g~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~D 610 (670)
..+..|+.|+| ...+||.|+.+ +.+.||....+ ..+.++.+|+.+|+.++|.|+- .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 56788999998 34578888766 57889976543 3566778999999999999953 489999999
Q ss_pred CcEEEEeCCCCcccccccc-----ccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 611 CTVKLWDVTTSTKVLKTEE-----KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 611 g~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
| |+||.+.........++ ....-....+..+..|.+.|..+.|.-.|.+|++.+.||.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 9 99999985332221111 1112234567788999999999999999999999999985
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=210.92 Aligned_cols=236 Identities=24% Similarity=0.333 Sum_probs=201.5
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
.+|...-+.++|.|+|.+|++|+.||.|++|+.... +....+.-+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468899999999999999999999999999998765 3334444367777777664 5599999999999999999988
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
.-..+....-++++++|+.+|++++.|++|-.|++.++........+.+|.++|.++.|+|++.+||+.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 87777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEeeCC--------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 577 ASGRCVTPLMGH--------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 577 ~~~~~~~~~~~h--------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
.++.+...+.+- ...+..++|+|+|..++..+.|++|++|+.......... ....+.+.
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-------------r~~~~ss~ 234 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-------------RDKLSSSK 234 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-------------cccccccc
Confidence 998877666431 345677999999999999999999999999886543211 11223344
Q ss_pred eEEEEEecCCcEEEEeeCCC
Q 005913 649 VYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs~dg 668 (670)
+..+.|+|+|.+||+++.+|
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred eEEEEEcCCCcEEeeeccCC
Confidence 99999999999999999887
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.9e-21 Score=185.71 Aligned_cols=231 Identities=19% Similarity=0.254 Sum_probs=189.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
..+.|..++.+++|.+ ...+++|+.||.|+.+|+++. ....+..|..+|.
T Consensus 49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i~ 98 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGIR 98 (323)
T ss_pred hheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCceE
Confidence 4567888999999987 567889999999999999862 2344567999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--cc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AG 503 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~--~~ 503 (670)
|+.+++-...+++||.|++|++||.+.......+.. ...|.++.. .|+.|++|+.|..+.+||+++....... ..
T Consensus 99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~ 175 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS 175 (323)
T ss_pred EEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccc
Confidence 999999999999999999999999987555555543 336777666 4778999999999999999876543322 23
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC----cEEEEEecCCC---------CeEEEEEcCCCCEEEEEECCCe
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
-.-.+.|+++-|++.-+++++-||.|.+=.+... .....|..|.. +|.+|+|+|-...|+||+.||.
T Consensus 176 lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 176 LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 3456899999999999999999999988666554 23344555542 7999999999999999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~ 609 (670)
|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 256 V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999888888999999999999999974
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.4e-21 Score=185.32 Aligned_cols=209 Identities=27% Similarity=0.469 Sum_probs=175.5
Q ss_pred eeecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------------ee---EEeeCCCccEeEEEEec-CCCEE
Q 005913 416 LYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------------NL---VCYKGHNYPVWDVQFNP-QGHYF 478 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~------------~~---~~~~~h~~~V~~l~~sp-~g~~l 478 (670)
....|.+.|+++...+ .|+++++|+.||.|.+||++... ++ ..-.+|...|.++.|-| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999987 57899999999999999997543 11 01236889999999999 66789
Q ss_pred EEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (670)
Q Consensus 479 ~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 555 (670)
.+++.|.++++||.++.+....|. ..+.|.+-+|+|- ..++|+|..|-.|++.|+.+|.+-.++.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999988877776 4467777788873 457888999999999999999999999999999999999
Q ss_pred cCCCC-EEEEEECCCeEEEEeCCCC-eeeEE--------------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 556 SPDGR-YMASGDEDGTIMMWDLASG-RCVTP--------------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 556 sp~g~-~l~sg~~dg~I~iwDl~~~-~~~~~--------------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
+|... .|++|+.||.|++||++.. .+... -..|.+.|.+++|+.++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 99766 5778999999999999754 22222 23577889999999999999999999999999999
Q ss_pred CCcccc
Q 005913 620 TSTKVL 625 (670)
Q Consensus 620 ~~~~~~ 625 (670)
++....
T Consensus 277 ~G~ntl 282 (397)
T KOG4283|consen 277 SGRNTL 282 (397)
T ss_pred cCcccc
Confidence 886543
No 143
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3.4e-21 Score=185.30 Aligned_cols=249 Identities=18% Similarity=0.239 Sum_probs=198.1
Q ss_pred cccceecCCCCC-CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 328 LRNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 328 ~~~~~~l~~~~~-ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
....+++|...- .........++.++|.|++|+.||+.+++|+.|+.+++||+..
T Consensus 48 WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S------------------------ 103 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS------------------------ 103 (347)
T ss_pred cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC------------------------
Confidence 345677775432 1111234577889999999999999999999999999999985
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
........|.++|.++.|-+... .|++||.|.+|+.||++....+.++.- ...+.++.. ....++++..+
T Consensus 104 -----~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~ 175 (347)
T KOG0647|consen 104 -----GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAE 175 (347)
T ss_pred -----CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecC
Confidence 24556778999999999988766 899999999999999998887777664 334555444 34578888999
Q ss_pred CcEEEEECCCCceeE--EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEecCCC---------CeE
Q 005913 485 RTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MIL 551 (670)
Q Consensus 485 g~v~lwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~I~ 551 (670)
+.|.+|+++++.... ....-.-.++||+..++....+.|+-.|.+.+..+..+ +.-..|+.|.. .|.
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 999999997653321 11223346899999999888899999999999988876 33345556652 478
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE
Q 005913 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs 608 (670)
+|+|+|.-..|+|+|.||++.+||-.....++....|..+|++++|+.+|.+++-+.
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 899999999999999999999999988888999899999999999999999887653
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.4e-20 Score=188.98 Aligned_cols=273 Identities=19% Similarity=0.284 Sum_probs=213.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-ccCEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~ 428 (670)
.++.|..+.|+|.+.-|.+.+..|.+..|++.+..... ....+..+ ..-|.|++
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k-------------------------~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK-------------------------RQGIFEKREKKFVLCVT 253 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE-------------------------EeeccccccceEEEEEE
Confidence 35668899999987777777789999999987633211 11122222 26799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-----------e
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-----------P 497 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-----------~ 497 (670)
|.++|+ +++|..+|+|.||+..+.+..+....|.+.|.+++...+|. |++|+.|+.|..||-+-.+ +
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGP 331 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCC
Confidence 999887 67899999999999988877777779999999999999996 5559999999999832000 0
Q ss_pred e-----------------------------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913 498 L-----------------------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (670)
Q Consensus 498 ~-----------------------------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (670)
+ ....+|......++.||+.+.++|++.|+.+++|+ ..+.+.... -..
T Consensus 332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d 408 (626)
T KOG2106|consen 332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IED 408 (626)
T ss_pred eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecC
Confidence 1 11235777788899999999999999999999999 445544332 347
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 628 (670)
++.|+.|+|.| .+|.|+..|...+.|..+...+..-. .+.+++.+.|+|+|.+||.|+.|+.|.||.+..+......
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r- 485 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR- 485 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-
Confidence 78999999999 99999999999999999965554443 4889999999999999999999999999999886543211
Q ss_pred cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
+... +.++|+.+.||+|+++|.+-+-|
T Consensus 486 ----------~~k~--~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 486 ----------VGKC--SGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ----------eeee--cCceeEEeeecCCCceEEeccCc
Confidence 1222 23899999999999999876544
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=194.59 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=212.6
Q ss_pred ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 348 INTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~--~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.-+.+.|+|++|+|.. +++|+|...|.|-+||+.+.. .....+..+..|+++|.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPVS 238 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCcccc
Confidence 3467889999999964 589999999999999996311 11235667889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEe
Q 005913 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIM 501 (670)
Q Consensus 426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~ 501 (670)
++.|+|.+ ..+++.|.||+|++-|++....-..+.. ....+.++.|+.+...++.+..=|...+||+++... ...+
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh
Confidence 99999966 4789999999999999987654444433 555677888988888888888888999999987655 5666
Q ss_pred cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 502 AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
.-|...|..|+++|.. .+|+|++.|++.+|||++.-. ++-....|...|.+..|||.|..|+|.+.|..|+|||.
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 7788899999999965 578899999999999998532 22334579999999999999888999999999999998
Q ss_pred C----CCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913 577 A----SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646 (670)
Q Consensus 577 ~----~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (670)
. .-.+...+. |.. ......|.|+.+++++|-.-..|-|+|-..+..+... .....
T Consensus 399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el--------------~~P~~ 463 (498)
T KOG4328|consen 399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL--------------HDPES 463 (498)
T ss_pred ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec--------------cCccc
Confidence 3 223333332 221 2345689999999999999999999997776432111 11222
Q ss_pred CCeEEE-EEecCCcEEEEeeCC
Q 005913 647 TPVYSL-QFSRRNLLFAAGALS 667 (670)
Q Consensus 647 ~~V~~l-~fs~~~~~La~gs~d 667 (670)
..|.++ +|+|.+..+++|+..
T Consensus 464 ~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 464 STIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cccccceeecccccceeccCCc
Confidence 234443 789998866666543
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-20 Score=198.82 Aligned_cols=314 Identities=18% Similarity=0.296 Sum_probs=245.5
Q ss_pred HcccceecCCCCCCceeE---EEeecCCC-CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCC
Q 005913 327 DLRNRVHLSSAALPSVSF---YTFINTHN-GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP 400 (670)
Q Consensus 327 ~~~~~~~l~~~~~ps~~~---~t~~~~~~-~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~ 400 (670)
+.++.+++|....+.... .++....+ .|+++. +|. =+-++.|+..|.++||++.+
T Consensus 131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt------------------ 191 (910)
T KOG1539|consen 131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT------------------ 191 (910)
T ss_pred EccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc------------------
Confidence 445677788766642221 23333333 376664 453 46689999999999999986
Q ss_pred CccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EE
Q 005913 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FA 479 (670)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~ 479 (670)
.+.+..+.++...|+++.=+|-=+.++.|..+|+|.+++++.++.+..++...++|++++|.-||.. ++
T Consensus 192 ----------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~la 261 (910)
T KOG1539|consen 192 ----------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLA 261 (910)
T ss_pred ----------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEE
Confidence 4577888899999999999999999999999999999999999999999966799999999999976 56
Q ss_pred EEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----------------EEE
Q 005913 480 SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------------CVR 541 (670)
Q Consensus 480 s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------------~~~ 541 (670)
+|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++.+.|..+++|=..++. +++
T Consensus 262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir 341 (910)
T KOG1539|consen 262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR 341 (910)
T ss_pred eccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence 66677999999999887776665 787888888888888888888888877776322110 000
Q ss_pred EE------------------------------------------------------------------------------
Q 005913 542 IF------------------------------------------------------------------------------ 543 (670)
Q Consensus 542 ~~------------------------------------------------------------------------------ 543 (670)
.+
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 00
Q ss_pred -----------------ecCC------CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe---eCCCcceEEEEE
Q 005913 544 -----------------IGHR------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWTLAY 597 (670)
Q Consensus 544 -----------------~~h~------~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~---~~h~~~V~sl~~ 597 (670)
-.+. ..+++++.+++|++.+.|...|.|-+|++.+|-....+ ..|.++|++++.
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 0122 56889999999999999999999999999999988888 489999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcccccccccc--------------------------CCcccccccccCCCCCCeEE
Q 005913 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS--------------------------GTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~V~~ 651 (670)
..-++.+++++.+|.+++||+............. .......++.+.+|...|++
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 9889999999999999999998866332221100 01112345678899999999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
+.|||+|++|++++.|++
T Consensus 582 ~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDST 599 (910)
T ss_pred eEeCCCCcEEEEeecCCc
Confidence 999999999999999986
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-21 Score=196.89 Aligned_cols=290 Identities=17% Similarity=0.219 Sum_probs=224.2
Q ss_pred cccceecCCCC-CCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 328 LRNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 328 ~~~~~~l~~~~-~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+.+.||+.+ +....+|..+...-++.++.|+....++ |+.+.|..|++|.-....
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--------------------- 68 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--------------------- 68 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---------------------
Confidence 34566777653 3344455555556679999999876432 334567889999865410
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
..........|. .-.|++......++++|+..++|+|||++...+.+.+++|...|+++.++....|||+++..|
T Consensus 69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 001122222232 334555555558999999999999999997778888999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccc-CCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCC-CCE
Q 005913 486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPD-GRY 561 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~-g~~ 561 (670)
.|.|..+.++.....|... ...|.-+.|+|..+.+ .+++.+|.|.+||+....++..+ ..|..+...|+|+|. ..+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999999988777777644 3446689999987755 56888999999999877766544 579999999999994 567
Q ss_pred EEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 562 l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
|++.+.|..|.+||.++.+....+. ...+..+++|+++|.+|+.|+..|.|..||++... .++..
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--------------~Pv~v 288 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--------------APVAV 288 (673)
T ss_pred EEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--------------CCceE
Confidence 8899999999999999776665553 45678999999999999999999999999998854 35677
Q ss_pred cCCCCCCeEEEEEecCC
Q 005913 642 LPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~ 658 (670)
...|...|++++|-|.-
T Consensus 289 ~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecccceeEEEeeecc
Confidence 78888899999998875
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1.9e-20 Score=197.48 Aligned_cols=290 Identities=22% Similarity=0.336 Sum_probs=224.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.+|.+-|.++.|+|.+..|.+++.|.++.||.-......-.. .-.+-...|..+..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~---------------------~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD---------------------VVRLGEVGGSAGGFWG 321 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE---------------------EEEeecccccccceee
Confidence 3589999999999999999999999999999986542110000 0011112245577899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------- 494 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~--------- 494 (670)
.-|+|+++.+++-+..|..++|..... .....+.||...|.+++|+|.|.+++++|.|.+-|++---.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 999999999999999999999983322 33456789999999999999999999999999888863210
Q ss_pred -Cc-----------------------------------------------------------------------------
Q 005913 495 -IQ----------------------------------------------------------------------------- 496 (670)
Q Consensus 495 -~~----------------------------------------------------------------------------- 496 (670)
++
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 00
Q ss_pred -----------------------------------eeEEecccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCC
Q 005913 497 -----------------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSS 536 (670)
Q Consensus 497 -----------------------------------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~ 536 (670)
.+..+.||...|.|++.+|+++.+|+++.. ..|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 012244788899999999999999998754 3699999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (670)
Q Consensus 537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~ 612 (670)
...+..+.+|.-.|+.++|||||++|++.+.|.++.+|...... .....+.|+.-|++++|+|++.+++|+|.|.+
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 99999999999999999999999999999999999999875432 22336789999999999999999999999999
Q ss_pred EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC-----CcEEEEeeCCC
Q 005913 613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-----NLLFAAGALSK 668 (670)
Q Consensus 613 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~-----~~~La~gs~dg 668 (670)
|+||........ ....+ .......+|++++|.|- +.++++|-..|
T Consensus 642 VkVW~~~~~~d~----------~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G 691 (764)
T KOG1063|consen 642 VKVWEEPDLRDK----------YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG 691 (764)
T ss_pred EEEEeccCchhh----------hhhhh-chhccCCceeeEEeeccccccccceEEEEeccc
Confidence 999998876311 00111 23356678999988762 23677776554
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.4e-22 Score=220.41 Aligned_cols=234 Identities=23% Similarity=0.387 Sum_probs=192.6
Q ss_pred ccCEEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEE
Q 005913 421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARI 489 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~----L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~l 489 (670)
....+.++|.+.+.. |+.|..||.|.+||...- ..+..+..|.++|..+.|++.. +.+|+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 356788999998775 888999999999998752 2355677899999999999954 59999999999999
Q ss_pred EECCCCceeEEec--ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC--CeEEEEEcCCCC-EEE
Q 005913 490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA 563 (670)
Q Consensus 490 wd~~~~~~~~~~~--~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~g~-~l~ 563 (670)
||+.+.+.-.... ...+.|.|++|+. ....|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755443332 2457899999985 456788899999999999999988877766654 477899999764 555
Q ss_pred EEECC---CeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 564 SGDED---GTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 564 sg~~d---g~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+++.| -.|.+||++.. .+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+..+++ .
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---------------v 288 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---------------V 288 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---------------E
Confidence 55544 36999999854 5778888999999999999965 899999999999999999975 3
Q ss_pred ccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs 669 (670)
+..+++....++.+.|+|.+. +++++++||.
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 667888888999999999987 8899999884
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-21 Score=216.56 Aligned_cols=254 Identities=22% Similarity=0.432 Sum_probs=209.4
Q ss_pred ecCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~----La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
+.....-+.++|++.|.. +|.|..||.|.+|+..... .+.....+.....|+++
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~ 118 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP 118 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence 344556788999987766 8999999999999976420 11223456677889999
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeE
Q 005913 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 424 V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
|.++.|++... .||+|+.||.|.|||+...+.-..+. .....|.+++|+. ..+.|++++.+|.+.|||++..+++-
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 99999999776 99999999999999998755444442 2456799999998 46678999999999999999998888
Q ss_pred EecccCC--CeeEEEEcCCC-CEEEEEEcCC---cEEEEECCC-CcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeE
Q 005913 500 IMAGHLS--DVDCVRWHINC-NYIATGSSDK---TVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI 571 (670)
Q Consensus 500 ~~~~~~~--~v~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I 571 (670)
.+..+.+ .+..++|||+. ..|++++.|. .|.+||+|. ..+++++++|...|.++.|++.+ .+|++++.|+.|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 8876655 36789999986 4566666543 699999985 45678889999999999999966 899999999999
Q ss_pred EEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCcc
Q 005913 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+|+..+++.+..+......+..+.|+|... .+++++.||.|.|+.+.....
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 9999999999999988888999999999654 899999999999999987653
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=197.28 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=201.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~ 441 (670)
....||.+..||.|.++|....... .+...+.....|.+.|..+.|.|....|++++.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence 4567999999999999997642111 123455677889999999999996668999999
Q ss_pred CCeEEEEeCCCCceeEE--eeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc--------------------e-
Q 005913 442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P- 497 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~--------------------~- 497 (670)
|.++++||+.+.+.+.. +.+|.+.|.+++|.| +...|++|+.||.+.|||++-.. +
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999888766 899999999999999 45679999999999999986211 1
Q ss_pred ------eEEecccCCCeeE---EEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEE--------EecC---CCCeEEEEEc
Q 005913 498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVRI--------FIGH---RSMILSLAMS 556 (670)
Q Consensus 498 ------~~~~~~~~~~v~~---v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~I~~l~~s 556 (670)
++....+...|.. +.+..|...||+++. |+.|++||++...+... +..| ...++++...
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1112234444444 555578888998877 99999999997654322 1222 2357888888
Q ss_pred CCCCEEEEEECCCeEEEEeCCCC--eeeEEeeCCCc-ce-EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccC
Q 005913 557 PDGRYMASGDEDGTIMMWDLASG--RCVTPLMGHTS-CV-WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h~~-~V-~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 632 (670)
..|.+|++.+.|+.|++|++.+- .++..+.++.. .+ ..-..+|++.+|++|+.|....+|.+.+...
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--------- 351 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--------- 351 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC---------
Confidence 88999999889999999999864 34444444432 11 1234589999999999999999999988653
Q ss_pred CcccccccccCCCCCCeEEEEEecC--CcEEEEeeCCC
Q 005913 633 TNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGALSK 668 (670)
Q Consensus 633 ~~~~~~~~~~~~~~~~V~~l~fs~~--~~~La~gs~dg 668 (670)
....+.+|...|++++|.|. ..+ |+++.|-
T Consensus 352 -----~~~~l~Ght~eVt~V~w~pS~~t~v-~TcSdD~ 383 (720)
T KOG0321|consen 352 -----PPALLLGHTREVTTVRWLPSATTPV-ATCSDDF 383 (720)
T ss_pred -----ChhhhhCcceEEEEEeeccccCCCc-eeeccCc
Confidence 24456678888999999774 444 4446653
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=190.08 Aligned_cols=236 Identities=19% Similarity=0.375 Sum_probs=198.7
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCce
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~ 497 (670)
.++|+++.|+|....|++|+.||+++||.+.... .+..+.-...||.+.+|.|+|+ .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4789999999999999999999999999887443 4555555688999999999999 899999999999999987764
Q ss_pred eEE--ecccC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 498 LRI--MAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 498 ~~~--~~~~~-~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
... ..++. ..+.....+|++++|+..+..|.|.+....+++.+..+. -.+.|..++|+.+|+.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 432 33333 346778889999999999999999999999999998886 45789999999999999999999999999
Q ss_pred eCCCCeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913 575 DLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 653 (670)
|++...++.++.... -.-++++.|++|.+||+|+..|.|.|||..+... ...+.++.++..-.+.|.+++
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~---------s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA---------STNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc---------cCCCCchhhhhhhheeeeeee
Confidence 999999998886432 1235788889999999999999999999776432 123456778888888999999
Q ss_pred EecCCcEEEEeeC
Q 005913 654 FSRRNLLFAAGAL 666 (670)
Q Consensus 654 fs~~~~~La~gs~ 666 (670)
|+++.++||.+|.
T Consensus 443 Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 443 FNHDAQILAIASR 455 (514)
T ss_pred eCcchhhhhhhhh
Confidence 9999999998875
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=4.2e-20 Score=184.30 Aligned_cols=285 Identities=17% Similarity=0.285 Sum_probs=212.3
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.+.+|.++.|.+++. .+|+|+.|..|+||.+........ .........+..|...|+++.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------DMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------ceeEEEeecccCCcceeEEEE
Confidence 456899999998766 999999999999999875211100 012335567889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC--------C--------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
|+|+|+.|++|+.+|.|.+|-.. + +...+...+|...|..++|+|++.++++++.|.++++||+
T Consensus 73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99999999999999999999765 2 2234567789999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-------------------cCCC----C
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------------------GHRS----M 549 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------------~h~~----~ 549 (670)
..++....+..|...|..++|.|-++++++-+.|...+.+++...+.+.... -|.. -
T Consensus 153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999999999999999999877777765433221110 0111 2
Q ss_pred eEEEEEcCCCCEEEEEEC----C-----CeEEEEeCC-CCeeeEEeeCCCcceEEEEEcC------------------CC
Q 005913 550 ILSLAMSPDGRYMASGDE----D-----GTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSC------------------EG 601 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~----d-----g~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~------------------~g 601 (670)
...++|+|+|.+|++... . +..++|+-. ..++...+.....++..+.|+| -+
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 456789999999988531 2 233455533 2244455555555555555554 12
Q ss_pred CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 602 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
-.++.++ .+.|.|||.....+.. ..-.-|-.+|+.++|+++|..|+..|.||
T Consensus 313 lvfaiAt-~~svyvydtq~~~P~~--------------~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 313 LVFAIAT-KNSVYVYDTQTLEPLA--------------VVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred eEEEEee-cceEEEeccccccceE--------------EEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 2344554 4589999988755431 11234667899999999999999999997
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.3e-20 Score=193.11 Aligned_cols=266 Identities=23% Similarity=0.365 Sum_probs=212.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.|..++|-|||+.|+.+ .+..+.|||.+. +.....+++|...|+|++|+.+
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d 64 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD 64 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence 68999999999999888 566899999875 3466778999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
|..+++|+.|..|.+|+-.... +..| +|+..|.|+.|+|-.+.+++++-. ..-+|+.+....... .....+.+++
T Consensus 65 GkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--kss~R~~~Cs 139 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--KSSSRIICCS 139 (1081)
T ss_pred CceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--hhheeEEEee
Confidence 9999999999999999976433 3334 489999999999999999999863 467898775433221 2346788999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCC-----CEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDG-----RYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g-----~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
|..||.+++.|-.+|+|.+-+-.....++.-. +...+|.+++|+|.. ..+++.....++.++.+ +|+.+..-
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~ 218 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD 218 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc
Confidence 99999999999999999998754333333322 466799999999953 37788888888888886 45555443
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
+.-.-...++++.++|.++..||.|+.+++|--+. -.+.+.....+.|+.++..|+++..+.|+
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEEEEE
Confidence 43444557889999999999999999999996544 23456666788999999999999999999
Q ss_pred CCCC
Q 005913 666 LSKT 669 (670)
Q Consensus 666 ~dgs 669 (670)
-|||
T Consensus 283 qDGT 286 (1081)
T KOG1538|consen 283 QDGT 286 (1081)
T ss_pred ccCe
Confidence 9997
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.6e-20 Score=178.97 Aligned_cols=236 Identities=16% Similarity=0.256 Sum_probs=183.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..||++++||++|+.|+++|.|..+.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999988887
Q ss_pred cCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCC----CeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 504 ~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
..++|..+.|||.. +..++.-.+..-.+.++..+.....-....+ .-.+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 56899999999854 4444444455556666654322211111111 123346889999999999999999999999
Q ss_pred CeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC--CCCCCeEEEEEe
Q 005913 579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP--TKSTPVYSLQFS 655 (670)
Q Consensus 579 ~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~V~~l~fs 655 (670)
-+++..++-.+ ..|.++-++..|+.|+.-+.|..||.|++..-.... ....+.+...+. ....+-.++.||
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~------r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG------RDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC------ccCCcChhHHHHHHHhhhhhhheeec
Confidence 99999887666 789999999999999999999999999987321110 000011111111 123345688999
Q ss_pred cCCcEEEEeeC
Q 005913 656 RRNLLFAAGAL 666 (670)
Q Consensus 656 ~~~~~La~gs~ 666 (670)
.+|.++++|+.
T Consensus 259 ~dgeYv~a~s~ 269 (405)
T KOG1273|consen 259 GDGEYVCAGSA 269 (405)
T ss_pred CCccEEEeccc
Confidence 99999999884
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.6e-20 Score=185.92 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=163.5
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCce---eE------------------EeeCCCccEeEEEEecC-
Q 005913 424 VYSASFSP-------LGDFILSSSADTTIRLWSTKLNAN---LV------------------CYKGHNYPVWDVQFNPQ- 474 (670)
Q Consensus 424 V~~l~~sp-------~~~~L~s~s~Dg~I~lwd~~~~~~---~~------------------~~~~h~~~V~~l~~sp~- 474 (670)
-.|+.|.. -|+++|.|+.|..|.|||+.-... .. .-.+|+..|.++.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34666643 267999999999999999863211 01 12368888889999874
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEE
Q 005913 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (670)
Q Consensus 475 g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 553 (670)
.+.||+||.|.+|.+||+.+++|..++..|...|.++.|||. ..+|++|+.|++|.+.|+|...+....-.-.+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 567999999999999999999999999999999999999985 5789999999999999999533332222345779999
Q ss_pred EEcCCC-CEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcc
Q 005913 554 AMSPDG-RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 554 ~~sp~g-~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+|.|.. ..+++++.||+++-+|++.. +++.++..|.++|.++++++. ..++++++.|+.|++|++.....
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 999965 46777889999999999965 899999999999999999874 46899999999999999987543
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=4.8e-20 Score=191.81 Aligned_cols=150 Identities=22% Similarity=0.381 Sum_probs=120.5
Q ss_pred eeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-------cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCC
Q 005913 508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 508 v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~ 578 (670)
|+.+.|.| |...|++++.||.|++|.+..+ .+...+..|...|+++.|+| -...|++++.|.+|++||+++
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 34445554 3456999999999999998754 34567789999999999999 456899999999999999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
++....+.+|++.|.+++|||+|+.+++.+.||+|+||+-.+........ -....+.--.+.|--+|
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-------------~gpvgtRgARi~wacdg 776 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-------------KGPVGTRGARILWACDG 776 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC-------------CCCccCcceeEEEEecC
Confidence 99999999999999999999999999999999999999988765321110 00112334567889999
Q ss_pred cEEEEeeCCCCC
Q 005913 659 LLFAAGALSKTS 670 (670)
Q Consensus 659 ~~La~gs~dgs~ 670 (670)
+++++.++|+++
T Consensus 777 r~viv~Gfdk~S 788 (1012)
T KOG1445|consen 777 RIVIVVGFDKSS 788 (1012)
T ss_pred cEEEEecccccc
Confidence 999999888753
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.1e-20 Score=192.60 Aligned_cols=253 Identities=21% Similarity=0.328 Sum_probs=191.1
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
++.+..|.+.|..+.|-|....|++++.|.++++||+...... -...+.||.+.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~--------------------------G~~~~~GH~~S 146 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV--------------------------GGRLNLGHTGS 146 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee--------------------------cceeecccccc
Confidence 4567788999999999997788999999999999999863221 22357899999
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------------------eEEeeCCCccEeE---EEEe
Q 005913 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN 472 (670)
Q Consensus 424 V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---l~~s 472 (670)
|.+++|.|.+. .+++|+.||.|.|||++-... +...+.+...|.+ +.+.
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 99999999776 678999999999999863320 0111224444555 6666
Q ss_pred cCCCEEEEEEC-CCcEEEEECCCCcee------EEe--ccc---CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--
Q 005913 473 PQGHYFASSSH-DRTARIWSMDRIQPL------RIM--AGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-- 538 (670)
Q Consensus 473 p~g~~l~s~s~-dg~v~lwd~~~~~~~------~~~--~~~---~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-- 538 (670)
.|...||++|. |+.|++||+++.... ... ..| .-.+.++.....|++|++.+.|+.|++|++.+-.
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 78889999987 999999999865432 221 222 2346778878888999999999999999998543
Q ss_pred EEEEEecCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEE
Q 005913 539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVK 614 (670)
Q Consensus 539 ~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~ 614 (670)
++..+.++... -..-..+|++.++++|+.|+..++|.+.+-. ....+.+|.-.|++++|.|. -.-+++++.|.+++
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 34444443321 1223468999999999999999999998754 45567799999999999883 23477779999999
Q ss_pred EEeCCCCc
Q 005913 615 LWDVTTST 622 (670)
Q Consensus 615 iwd~~~~~ 622 (670)
||++..+.
T Consensus 387 iW~l~~~l 394 (720)
T KOG0321|consen 387 IWRLSNGL 394 (720)
T ss_pred EEeccCch
Confidence 99996653
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-20 Score=194.98 Aligned_cols=258 Identities=21% Similarity=0.313 Sum_probs=201.8
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
+|+..|.+.|+.++|.|-...|++|+.||.|++|+++..... .......+..+.+|.++|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------~~~~~epi~tfraH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------AEKDVEPILTFRAHEGPV 347 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------cccceeeeEEEecccCce
Confidence 378888999999999999999999999999999999531100 112245778899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
.|++..+++..+++|+.||+|+.|++... ....++.||...||.+++|+....|++++.||++++|+...
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 99999999999999999999999966521 12356789999999999999999999999999999999887
Q ss_pred CceeEEecccC--CCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecC-------CCCeEEEEEcCCCCEEEE
Q 005913 495 IQPLRIMAGHL--SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 495 ~~~~~~~~~~~--~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~I~~l~~sp~g~~l~s 564 (670)
..+ ..+.... +....+.+-... ...++...-+.-.+++...+..+..+... ...+..+.++|.+.+.++
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~ 506 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT 506 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence 766 3333221 233444443222 12222223333444555555555554322 134677889999999999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+..|+.|+++|..++..+..+..|...++++++.|+|.+|++|+.||.+++|.+.....
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999999999999999999999999999999999999876543
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6e-19 Score=186.10 Aligned_cols=238 Identities=18% Similarity=0.332 Sum_probs=199.7
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
+.+.-...+|.+++|+.+.+.||.+-.||+|-+|++...=. ...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 34445568999999999999999999999999999986533 3444544 6679999999 4556888889999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--EEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
.++++...+....+.|.+++.+|.+..++.|+.||.+..++...++.. +.+....+.|.++.|+|++..|++|+.||.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999999999999999999999999999999998888888777654 445556689999999999999999999999
Q ss_pred EEEEeCCCCeeeEEee--------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 571 IMMWDLASGRCVTPLM--------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~--------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
|++||..++..+.... +...-|+++.|-.+ ..|++|.+-|+|.+||-..++ ++..+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT---------------LiqS~ 241 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT---------------LIQSH 241 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc---------------hhhhh
Confidence 9999999988766221 12345788887755 479999999999999988875 45677
Q ss_pred CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 643 PTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 643 ~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..|...|.+++.++++..+.+|+.|+.
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 788899999999999999999998874
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=6.7e-18 Score=180.94 Aligned_cols=281 Identities=36% Similarity=0.633 Sum_probs=224.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V 424 (670)
....+...+.++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 112 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV 112 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence 356678889999999999999999999999999987521 1233333433 367
Q ss_pred EEEEE-cCCCC-EEEEEeC-CCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE
Q 005913 425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR 499 (670)
Q Consensus 425 ~~l~~-sp~~~-~L~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~ 499 (670)
..+.+ ++++. .++.++. |+.+.+|+... ......+..|...|..+.|+|++.++++++. |+.+++|+...+..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 77777 78787 5555444 99999999998 7788889999999999999999998888886 9999999999988999
Q ss_pred EecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
.+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 9999999999999999998 55555899999999999888888 688888775 44899999999999999999999998
Q ss_pred CCee-eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 578 SGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 578 ~~~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
.... +..+.+|...|.++.|+|++..+++++.|+.+.+|+.......... . ...+...|..+.|.+
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~ 338 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------------T-LKGHEGPVSSLSFSP 338 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe------------e-ecccCCceEEEEECC
Confidence 7665 4445678899999999998888988999999999988775432111 1 224455788888843
Q ss_pred CCcEEEEe-eCC
Q 005913 657 RNLLFAAG-ALS 667 (670)
Q Consensus 657 ~~~~La~g-s~d 667 (670)
++..++.+ ..|
T Consensus 339 ~~~~~~~~~~~d 350 (466)
T COG2319 339 DGSLLVSGGSDD 350 (466)
T ss_pred CCCEEEEeecCC
Confidence 32455544 444
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.7e-20 Score=187.34 Aligned_cols=241 Identities=16% Similarity=0.295 Sum_probs=196.8
Q ss_pred ceecCC--CCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 331 RVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 331 ~~~l~~--~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
.+.+|. ..+|.++.....+.. .-.|++......++++|+..++|+|||+..
T Consensus 58 ~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------------------------- 110 (673)
T KOG4378|consen 58 VMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA-------------------------- 110 (673)
T ss_pred eEEEecccCCCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH--------------------------
Confidence 444553 345555554444333 444555545558999999999999999874
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCC-EEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~-~l~s~s~dg~ 486 (670)
....+.+.+|...|+++.++....+||+++..|.|.|..+.++.....+... ...|.-+.|+|..+ .|.+++.+|.
T Consensus 111 --kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 111 --KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred --HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 3466778999999999999999999999999999999999998887777754 45567899999654 5677899999
Q ss_pred EEEEECCCCceeEEe-cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 487 ARIWSMDRIQPLRIM-AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 487 v~lwd~~~~~~~~~~-~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
|.+||+....++..+ ..|..+...|+|+|.. ..|++.+.|+.|.+||++..+....+. ...+.+.++|+++|.+|++
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence 999999988887665 4799999999999854 577889999999999999877776664 5578999999999999999
Q ss_pred EECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCC
Q 005913 565 GDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG 601 (670)
Q Consensus 565 g~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g 601 (670)
|...|.|..||++.. .++..+..|...|++++|-|..
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999854 6788889999999999997754
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1e-19 Score=188.98 Aligned_cols=240 Identities=25% Similarity=0.373 Sum_probs=198.6
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE--EEEEECCCcEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARIW 490 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~--l~s~s~dg~v~lw 490 (670)
....+.||++.|.+++..|.|.+|++|+.||+|+||.+.++.|+..+.- .+.|.||+|+|.+.. ||++-. ..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 4567889999999999999999999999999999999999999988874 457999999996543 444332 334444
Q ss_pred ECCCC-------------------------------------ceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEE
Q 005913 491 SMDRI-------------------------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVR 530 (670)
Q Consensus 491 d~~~~-------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~ 530 (670)
+..-| .-++....|...|..|.||..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32100 0123444588899999999999999997653 5799
Q ss_pred EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913 531 LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 531 iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+......|.+++.+|.|.-|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999887777677667788999999999999988875 679999999988888887777889999999999999999999
Q ss_pred CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 611 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+.++.+|+.-+.+ ...++..|...|.+|+|++.-.++|+|+.||+
T Consensus 629 ~k~~WfDldlssk--------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 629 KKMCWFDLDLSSK--------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred CeeEEEEcccCcc--------------hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 9999999988653 35567788889999999999999999999986
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3.4e-19 Score=170.34 Aligned_cols=255 Identities=21% Similarity=0.364 Sum_probs=189.6
Q ss_pred ceeeeecCccCEEEEEEcCCCC-EEEEEeCC-------CeEEEEeCCCC---------ceeEEee-CCCccEeEEEEecC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSAD-------TTIRLWSTKLN---------ANLVCYK-GHNYPVWDVQFNPQ 474 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~D-------g~I~lwd~~~~---------~~~~~~~-~h~~~V~~l~~sp~ 474 (670)
....+..|.+.|..++-+|-.. .|+++..+ ..+.||.+... +++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3445667889999999999665 45555432 24779987633 2233333 34558999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCce-eEEec-----ccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEE-ec
Q 005913 475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIF-IG 545 (670)
Q Consensus 475 g~~l~s~s~dg~v~lwd~~~~~~-~~~~~-----~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~ 545 (670)
+..+++-. |..|.+|+++.... +..+. ++....++-+|+| +|+.+++. .|++++.||+++.++...+ ..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99988876 78999999987655 32222 3445677888987 77888776 5899999999988776554 46
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913 546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 546 h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
|...|..+.|+|+-+ +|++|++||.|+|||.++ ..++..+.+|...|+++.|+| ..++|.+||.|..|.+|...+-.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 778899999999755 788999999999999985 468899999999999999999 46789999999999999875533
Q ss_pred cccccc--------------cccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913 623 KVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 669 (670)
Q Consensus 623 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs 669 (670)
.....+ ++...-...++.++..|...|++++||.... ++|+-++||.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 211110 0111222345678899999999999987654 5677788873
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.4e-19 Score=173.31 Aligned_cols=284 Identities=17% Similarity=0.283 Sum_probs=212.3
Q ss_pred cCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 349 NTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 349 ~~~~~V~~l~fs~-----d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
+|...|..++|++ +...+|+. ....+.||........... ....-..|...
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~ir~l-----------------------q~y~D~d~~Es 91 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGIRLL-----------------------QSYADEDHDES 91 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccceeee-----------------------eeccCCCCCcc
Confidence 4556788888874 33455555 4557889987653211110 00011136677
Q ss_pred EEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 005913 424 VYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 424 V~~l~~sp~----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
.+.++|+-+ +.++|+|+.-|.|+|.|+.++++...+.+|...|..+.+.|+ .+++++||.|.+|++|++++..++
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 788888754 347899999999999999999999999999999999999995 578999999999999999999999
Q ss_pred EEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE------E-------------------E---EEecCC
Q 005913 499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFIGHR 547 (670)
Q Consensus 499 ~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~-------------------~---~~~~h~ 547 (670)
.++. +|...|.++.|+++|.+|++++.|.+|.+|++...+. . . +-.-|.
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 8875 7999999999999999999999999999999973211 0 0 112466
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCe-------------eeEEeeCCCcceEEEEE--cCCCCEEEEEECCC
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGR-------------CVTPLMGHTSCVWTLAY--SCEGSLLASGSADC 611 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~-------------~~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg 611 (670)
..|.|+.|- |.++++=+.++.|..|... -++ .+.++.-....|+-+.| .|-+++||.|...|
T Consensus 252 nyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred chHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 677777776 6899999999999999872 111 22333344455666554 56678999999999
Q ss_pred cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 612 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.|.+||++...+.... ..+-......|...+||.||.+|+..++|++
T Consensus 330 ~v~vwdL~~~ep~~~t-----------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCT-----------TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred cEEEEECCCCCCccCc-----------eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 9999999987643110 1112233456999999999999999999886
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.3e-19 Score=176.16 Aligned_cols=241 Identities=27% Similarity=0.464 Sum_probs=189.0
Q ss_pred cCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 349 ~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+.+....++|+-| ..+||+|+.-|.|+|.|+.. ......+.+|.+.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI 138 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI 138 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence 35566777888754 45899999999999999875 33556688999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----
Q 005913 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---- 496 (670)
Q Consensus 425 ~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~---- 496 (670)
+.+.|.|+. +++++||.|.+||+|++++..++..+- +|...|.++.|+++|.+|+++|.|.++.+|++...+
T Consensus 139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 999999976 588999999999999999999988865 699999999999999999999999999999997221
Q ss_pred -----------------------eeE-EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCc-------------
Q 005913 497 -----------------------PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGE------------- 538 (670)
Q Consensus 497 -----------------------~~~-~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~------------- 538 (670)
+.. +-.-|...|.|+.|- |+++++-+.++.|..|-.. -++
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 000 123477778888884 5899998889999999872 111
Q ss_pred EEEEEecCCCCeEEE--EEcCCCCEEEEEECCCeEEEEeCCCCeee--EEeeC--CCcceEEEEEcCCCCEEEEEECCCc
Q 005913 539 CVRIFIGHRSMILSL--AMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMG--HTSCVWTLAYSCEGSLLASGSADCT 612 (670)
Q Consensus 539 ~~~~~~~h~~~I~~l--~~sp~g~~l~sg~~dg~I~iwDl~~~~~~--~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~ 612 (670)
.+..+.-....|.-+ +|.|.+++||.|...|.|.+||++...+. .++.. ....|...+||.||.+|+..+.|++
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 122233333444444 55677899999999999999999987653 22222 2357899999999999999999999
Q ss_pred EEEEeCC
Q 005913 613 VKLWDVT 619 (670)
Q Consensus 613 I~iwd~~ 619 (670)
|.-||.-
T Consensus 377 Vwrwdrv 383 (385)
T KOG1034|consen 377 VWRWDRV 383 (385)
T ss_pred EEEEEee
Confidence 9999853
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=4.1e-18 Score=163.18 Aligned_cols=292 Identities=20% Similarity=0.248 Sum_probs=211.7
Q ss_pred CCCceeEEEeecCCCCEEEEEEcC--C-CCEEEEEeC----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCC
Q 005913 338 ALPSVSFYTFINTHNGLNCASISQ--D-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410 (670)
Q Consensus 338 ~~ps~~~~t~~~~~~~V~~l~fs~--d-~~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (670)
..+..+.++-.+.+-.+.++.||. + +-+||.|+. ...|.|-.+.......
T Consensus 31 ~~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~----------------------- 87 (364)
T KOG0290|consen 31 GNPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL----------------------- 87 (364)
T ss_pred cCcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce-----------------------
Confidence 445555555566777899999993 3 557888863 4556666655311100
Q ss_pred ccceeeeecCccCEEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCceeE---------EeeCCCccEeEEEEec-CC
Q 005913 411 KRSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QG 475 (670)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~-----~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp-~g 475 (670)
....-..|.-+++.+.|.|+.. +||+++ | .+|+|.+....... .-..+..+++++.|+. +-
T Consensus 88 --~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 88 --VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred --eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc
Confidence 1111146889999999999863 455443 4 69999987432211 1123677999999998 77
Q ss_pred CEEEEEECCCcEEEEECCCCce---eEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEe-cC--CC
Q 005913 476 HYFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-GH--RS 548 (670)
Q Consensus 476 ~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h--~~ 548 (670)
+++.+.+-|-++.|||++++.. ...+-.|...|..++|...+ +.+++.+.||.||+||++....-..+. +. ..
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 8899999999999999998643 45667899999999999755 578889999999999999765443332 22 45
Q ss_pred CeEEEEEcC-CCCEEEEEE-CCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccc
Q 005913 549 MILSLAMSP-DGRYMASGD-EDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 549 ~I~~l~~sp-~g~~l~sg~-~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+...++|++ |-+++|+-. ....|.|.|++. ..++.++++|.+.|..++|.|. +..|+++|.|..+-|||+......
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 788899998 456777754 446799999985 5788999999999999999995 568999999999999999875431
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEec-CCcEEEEeeC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGAL 666 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~-~~~~La~gs~ 666 (670)
....++..+. ....|..++|++ .+..++++..
T Consensus 324 ---------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 324 ---------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ---------CCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 1112333443 667899999995 5677777654
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=7.7e-17 Score=172.69 Aligned_cols=294 Identities=37% Similarity=0.617 Sum_probs=228.5
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..+.+|....+......+..|...|.+++|+|++.++++++. ++.+++|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 187 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------------------------- 187 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------------------------
Confidence 356666655544556677888899999999999999998886 99999999874
Q ss_pred CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
......+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+.+|...+ ...|+|++.++++++.|+.
T Consensus 188 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 264 (466)
T COG2319 188 --GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT 264 (466)
T ss_pred --CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc
Confidence 234455666999999999999998 55566999999999988777777 688888775 4489999989999999999
Q ss_pred EEEEECCCCce-eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEE
Q 005913 487 ARIWSMDRIQP-LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 487 v~lwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~ 563 (670)
+++|++..... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred EEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 99999987665 44446788999999999999999989999999999999888776665 7888899999943435566
Q ss_pred EE-ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE-EECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913 564 SG-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 564 sg-~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
.+ ..|+.+.+|++............ ..+..+.+++ ...++. +..++.+.+|+..........
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 408 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL-------------- 408 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec--------------
Confidence 55 68899999999888733333222 2288999988 544444 688999999999886532111
Q ss_pred cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 642 LPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
......+....+++++..++.++.+++
T Consensus 409 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 409 -DGHTSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred -cCCCCcEEEEEECCCCcEEEEecCCCc
Confidence 111168899999999998888666543
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=5.8e-19 Score=178.47 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=185.0
Q ss_pred ceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg 485 (670)
......-+.+.|++++|+|..+ .+++|..-|+|-+||+.+. ..+..+..|..+|.++.|+| +-..+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3345567899999999999765 7889999999999999633 23567788999999999999 557899999999
Q ss_pred cEEEEECCCCceeEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCC-CCE
Q 005913 486 TARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPD-GRY 561 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~-g~~ 561 (670)
+|++-|+++......+.. ....+..+.|+.+...+++|..=|...+||.+++.. ...+.-|...|.+++++|. ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987643333332 344567788887777788887777999999998765 6667778889999999995 457
Q ss_pred EEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC----CCccccccccccCC
Q 005913 562 MASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT----TSTKVLKTEEKSGT 633 (670)
Q Consensus 562 l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~~~~ 633 (670)
|+|++.|++.+|||++.-. ++-....|...|.+..|||.+..|++.+.|+.|+|||.. ...+.....+.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn--- 414 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN--- 414 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc---
Confidence 8999999999999998532 233445799999999999988889999999999999984 11111111000
Q ss_pred cccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.....-.......|.|+..++++|-.
T Consensus 415 -------~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 415 -------NRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred -------CcccccccchhheeCCCccEEEEecc
Confidence 00001123456678888888888754
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.5e-18 Score=164.52 Aligned_cols=254 Identities=20% Similarity=0.305 Sum_probs=191.7
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~-d~~~La~g~~d-------g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
+|..+.+.|..++-+| |.++|+++..+ -.+.||.+......... .....+..+
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L 118 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL 118 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence 5677788899999998 45667766542 23679998752221100 011222233
Q ss_pred e-cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEe-----eCCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913 418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCY-----KGHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (670)
Q Consensus 418 ~-~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~-----~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~ 488 (670)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+..+ ... .++....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 4567999999999999988776 788999999877652 222 13566788899999 67777765 579999
Q ss_pred EEECCCCceeEEec-ccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 005913 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSP-DGRYMAS 564 (670)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp-~g~~l~s 564 (670)
.||+++.+....+. .|...|..+.|+|+-. +|++|+.||.|++||.+. ..++..+.+|...|.++.|+| ..++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999877766554 7888899999999875 577899999999999985 567888999999999999999 4568889
Q ss_pred EECCCeEEEEeCCCC-----------------------------eeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEE
Q 005913 565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVK 614 (670)
Q Consensus 565 g~~dg~I~iwDl~~~-----------------------------~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~ 614 (670)
|+.|..|.+|-..+- ..+.++..|...|++++||.-.. ++|+-+.||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999999965321 12345677999999999987444 678889999998
Q ss_pred EEeCCC
Q 005913 615 LWDVTT 620 (670)
Q Consensus 615 iwd~~~ 620 (670)
|=.+..
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 876654
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=8.4e-18 Score=182.91 Aligned_cols=267 Identities=20% Similarity=0.266 Sum_probs=203.3
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
.+++|+..-|..+.+. +.....|+|++|+| +.++||.|+.+|.|.+||+.......
T Consensus 223 ~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------- 279 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------- 279 (555)
T ss_pred eEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence 5778888878655554 44577899999999 57888999999999999998643211
Q ss_pred CccceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeE------Eee------CCCccEeEEEEec-C
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLV------CYK------GHNYPVWDVQFNP-Q 474 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~------~~~------~h~~~V~~l~~sp-~ 474 (670)
..........|..+|+.+.|..+-. -++++|.||.|..|+++.-.... ... .....++++.|.+ +
T Consensus 280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 0122334457999999999976544 49999999999999877433210 011 1234688999998 5
Q ss_pred CCEEEEEECCCcEEEEECCCC--------ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEec
Q 005913 475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG 545 (670)
Q Consensus 475 g~~l~s~s~dg~v~lwd~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~ 545 (670)
...|++|+.+|.|.--+-... +....+..|.+.|.++.++|=+..++..+.|.+|+||... ...++..+..
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence 667999999999887443322 2233556788999999999988777666669999999988 6677777777
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCC--eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 546 h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+...+++++|||.. ..++++..||.|.+||+... .++.....+....+.+.|++.|+.|++|...|++.+|++..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 88889999999964 57788888999999999754 45555555566677888999999999999999999999964
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.9e-17 Score=152.16 Aligned_cols=241 Identities=19% Similarity=0.240 Sum_probs=182.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.|.+-++||.+++|++|..+|.|.++.+........ .......+...++|.++|+.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~-- 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH-- 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence 356668999999999999999999999875211100 011123445568999999999998
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcee--------EEeeCC-----CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANL--------VCYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~--------~~~~~h-----~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
..+|++|+ ||.|+-|..+..... ....-| -..|.++...|...-+++++.|+.++-||+++++..+
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 56777776 599999987643220 001112 2357888899877777788899999999999999999
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC---------C-CCeEEEEEcCCCCEEEEEECCC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---------R-SMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---------~-~~I~~l~~sp~g~~l~sg~~dg 569 (670)
.+.+|...|.|+.-......+++|+.||++|+||.++++++..+... . ..|.+++.+ ..+|++|+. .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-P 227 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-C
Confidence 99999999999998666668999999999999999999999877532 2 246666655 558877764 5
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+.+|.+++.++...+. -...|..+.|.. ..+++++..+.|.-|.+..
T Consensus 228 ~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 79999999988776664 345677788853 4677888888899998765
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.2e-17 Score=166.07 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=169.7
Q ss_pred ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecC-CCEEEEEEC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH 483 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~ 483 (670)
.+-...||+++|..++|+|.++ .||+||.|.+|.||.+..+ +.+..+.+|...|-.++|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3345679999999999999654 6889999999999998643 457788999999999999994 567899999
Q ss_pred CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEE
Q 005913 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYM 562 (670)
Q Consensus 484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l 562 (670)
|.+|.+|++.+++.+..+. |...|.++.|+.+|.+|++++.|+.|||||.++++.+..-.+|.+. -..+.|-.+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999888877 9999999999999999999999999999999999999888788763 4556677888855
Q ss_pred EEEE---CCCeEEEEeCCCCee---eEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcc
Q 005913 563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK 623 (670)
Q Consensus 563 ~sg~---~dg~I~iwDl~~~~~---~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~ 623 (670)
.||. .+..+-+||...-.. +..+. .++.|.---|.+|..+++.+ -.|+.||-|.+....+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 5553 567899999765432 23332 23445555678887776554 5899999999987653
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=163.81 Aligned_cols=249 Identities=17% Similarity=0.281 Sum_probs=184.1
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ- 418 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 418 (670)
|.-++|.+-+|.+.|+|+.|..+++ |.+|..-|.|.+|++++.... ..+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----------------------------~~~r~ 53 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----------------------------PLIRL 53 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccc----------------------------hhhhh
Confidence 4445677789999999999988776 888999999999999863321 1222
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---------------------------e------------
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC---------------------------Y------------ 459 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~---------------------------~------------ 459 (670)
.|...|+.+.--|+ ..|.+-+.|+.+.+|++.-...+.. +
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 34556666666665 4566666777777776653111000 0
Q ss_pred --------------eCCCccEeEEEEec-CCC--EEEEEECCCcEEEEECCCC----------ceeEEecccCCCeeEEE
Q 005913 460 --------------KGHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRI----------QPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 460 --------------~~h~~~V~~l~~sp-~g~--~l~s~s~dg~v~lwd~~~~----------~~~~~~~~~~~~v~~v~ 512 (670)
.+..+.+.+..|.- .+. .+++|-.+|.+.+||+..+ +.+.....|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 01123455555432 333 3566778999999999986 33344457889999999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCC--CcE-EEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSS--GEC-VRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~--~~~-~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h 588 (670)
|.+..+.=++|+.+..+.+|++.. +.+ ++. ..-....|..+.+-||++.+||++.|++|+||..++.+++..+..|
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 998777778888888999998863 322 111 1222345888999999999999999999999999999999999999
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
.+.|.+++|+|+..++|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.8e-18 Score=174.37 Aligned_cols=204 Identities=19% Similarity=0.300 Sum_probs=167.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
.+.++.++.||.+.+.+-. ++.-.....|.+.|.+-.|+|+|.-+++++.||.|++|+-.. -...++.....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEE
Confidence 3568888999999988744 556667788999999999999999999999999999998543 23333445667899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V 592 (670)
|.|+++.++.+. .+.+.|=.+.....+-.+..|.+-|.++.|+|....+++|++|-..++|| ..|..+..-..|..+|
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCcccccCChhccce
Confidence 999998777663 56788888877777778899999999999999999999999999999999 4677888888899999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
++++|+|+ ..++.++.+ ++| +.+ ...+.|+.++||+||.-+++|+..|
T Consensus 231 TSva~npd-~~~~v~S~n-t~R---~~~-----------------------p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TAR---FSS-----------------------PRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeccc-cceeeeeee-eee---ecC-----------------------CCccceEEEEEcCCCceeeccccCc
Confidence 99999999 566655543 444 111 3456799999999999999998876
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=7.7e-18 Score=176.43 Aligned_cols=259 Identities=18% Similarity=0.316 Sum_probs=203.0
Q ss_pred HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+++.+.+.+-.+. +.++.+|.+.|.|++||.||+++|+|+.|..|.||+-.-.+
T Consensus 30 AAg~rlliyD~ndG~l-lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---------------------- 86 (1081)
T KOG1538|consen 30 AAGSRLLVYDTSDGTL-LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---------------------- 86 (1081)
T ss_pred ecCCEEEEEeCCCccc-ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----------------------
Confidence 4456777776554443 55889999999999999999999999999999999854211
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
..-..|...|.|+.|+|-...|++|+-. ..-+|+..... +..++ ....|.+++|..||+||+.|-.+|+
T Consensus 87 --------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 87 --------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred --------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence 1223599999999999999999999864 47889877433 22222 2456889999999999999999999
Q ss_pred EEEEECCCCceeEEe--cccCCCeeEEEEcCCC-----CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913 487 ARIWSMDRIQPLRIM--AGHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 487 v~lwd~~~~~~~~~~--~~~~~~v~~v~~~p~~-----~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g 559 (670)
|.+-+-.....+++- .|..++|.+++|+|+. ..+++.....++.++.+. |+.+..-..-.-...|+.+-|+|
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC
Confidence 999865433333322 2567889999999865 467777788888888764 44443322333345689999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.++..|+.|+.+.+|- +.|-.+.++-.....|++++..|+++.++.|+.||+|-.|++-..
T Consensus 235 Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 9999999999999997 678888888778889999999999999999999999999998654
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7e-17 Score=175.68 Aligned_cols=289 Identities=18% Similarity=0.254 Sum_probs=216.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.|.-.++|.++||+++++|+|..||.|.+|.-... .......+.+.-|...|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeE
Confidence 34445899999999999999999999999974320 112346678889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-----
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG----- 503 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~----- 503 (670)
|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|..|.+....+......+.+
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 99999999999999999999999988 444555688999999999999999999999999998755444333332
Q ss_pred ------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec-----------CCCCeEEEEEcCCCCEEEEEE
Q 005913 504 ------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-----------HRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 504 ------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----------h~~~I~~l~~sp~g~~l~sg~ 566 (670)
..+-.+.++++|..+.++-.+..|.|.+||+.+...+..+.. +...+++++.+..|.+++|+-
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 233456788899888888888999999999998877655531 223578888888999999964
Q ss_pred --------CC--CeEEEEeCCCCe----eeEE-eeCCCcceEEEEEcC-C-CCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913 567 --------ED--GTIMMWDLASGR----CVTP-LMGHTSCVWTLAYSC-E-GSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (670)
Q Consensus 567 --------~d--g~I~iwDl~~~~----~~~~-~~~h~~~V~sl~~s~-~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 629 (670)
.| -.+++|-..... .... ...|...+...++.+ . ....++++.||.++||-+.......+..
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~- 496 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS- 496 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-
Confidence 22 357889765332 2222 246876666555543 3 3389999999999999997655443221
Q ss_pred ccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 630 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
..+.+...-.-|..++.+++|+.||.+|++|..+
T Consensus 497 ----s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 497 ----SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred ----cceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 1122222222378899999999999999887665
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=167.52 Aligned_cols=229 Identities=22% Similarity=0.375 Sum_probs=174.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC--CCCEEEEEeC
Q 005913 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSA 441 (670)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~L~s~s~ 441 (670)
+.+|++.+.|.|++||..+ ...+..+++|...+..+.|.. ....+.+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence 6799999999999999875 345667888999999999987 3567899999
Q ss_pred CCeEEEEeCCCCceeE--EeeCCC-ccEeEEEEecCCCEEEEEE----CCCcEEEEECCCCce-eEEe-cccCCCeeEEE
Q 005913 442 DTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR 512 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~l~~sp~g~~l~s~s----~dg~v~lwd~~~~~~-~~~~-~~~~~~v~~v~ 512 (670)
||+|++||+++..... .+..+. .+..+++....++.+++|. .+-.|.+||++..+. ++.+ ..|..+|+++.
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 9999999999876543 344454 4667777776788888885 567899999987665 5443 57999999999
Q ss_pred EcCC-CCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCeee-----
Q 005913 513 WHIN-CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCV----- 582 (670)
Q Consensus 513 ~~p~-~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~~----- 582 (670)
|||+ .+.|++|+.||-|.+||+..... +.....|...|.++.|..++ +.|.+-+..+...+|++..+.+.
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 9985 57999999999999999975422 22233566778999998876 34777777888888887543221
Q ss_pred --------------------------------------------------------EEeeC-CCcceEEEEEcCCCCEEE
Q 005913 583 --------------------------------------------------------TPLMG-HTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 583 --------------------------------------------------------~~~~~-h~~~V~sl~~s~~g~~l~ 605 (670)
..+.+ |..-|.++.|...+.++.
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence 11122 334466677777788999
Q ss_pred EEECCCcEEEEeCCC
Q 005913 606 SGSADCTVKLWDVTT 620 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~ 620 (670)
|||.||.+.+|....
T Consensus 333 TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVED 347 (376)
T ss_pred ccCCCceEEEEecCC
Confidence 999999999999644
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=2.3e-17 Score=164.89 Aligned_cols=265 Identities=20% Similarity=0.265 Sum_probs=191.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+..|+..|+++.|+|+|.+||+|+.+|.|.+|........ ... . ............+.+.+|...|+
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~------~~d-----~-e~~~~ke~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF------DAD-----T-EADLNKEKWVVKKVLRGHRDDIY 127 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc------ccc-----c-hhhhCccceEEEEEecccccchh
Confidence 35567889999999999999999999999999987631000 000 0 00001112345667889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec---
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--- 502 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--- 502 (670)
.++|+|++.++++++.|.++++||+..+........|..-+..++|.|.++++++-+.|+..+.+++...+.+....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999977777765332221111
Q ss_pred -----c-----------cC----CCeeEEEEcCCCCEEEEEEc----CC-----cEEEEECCC-CcEEEEEecCCCCeEE
Q 005913 503 -----G-----------HL----SDVDCVRWHINCNYIATGSS----DK-----TVRLWDVSS-GECVRIFIGHRSMILS 552 (670)
Q Consensus 503 -----~-----------~~----~~v~~v~~~p~~~~l~tgs~----dg-----~I~iwd~~~-~~~~~~~~~h~~~I~~ 552 (670)
+ |. .-...++|+|+|..+++... ++ +.++++-.. .++...+.+...+...
T Consensus 208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la 287 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA 287 (434)
T ss_pred eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence 0 11 12356789999999998542 22 234444321 2333344444455556
Q ss_pred EEEcC------------------CCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcE
Q 005913 553 LAMSP------------------DGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 553 l~~sp------------------~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
+.|+| .+-.+|.++ ...|++||..+-.++.... -|-..|+.++|+++|..|+..|.||..
T Consensus 288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred EEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 66655 122344444 5679999999888776654 477899999999999999999999988
Q ss_pred EEEeCCCCcc
Q 005913 614 KLWDVTTSTK 623 (670)
Q Consensus 614 ~iwd~~~~~~ 623 (670)
.+--+...+.
T Consensus 367 S~vtfe~~el 376 (434)
T KOG1009|consen 367 SLVTFEPWEL 376 (434)
T ss_pred EEEEEcchhc
Confidence 8777666543
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.7e-17 Score=162.85 Aligned_cols=299 Identities=15% Similarity=0.231 Sum_probs=217.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee-eeecCccCE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V 424 (670)
.+.+|.+.|+++.||.++++||+|+.|-.+++|++.......+ .+.+. .-..|...|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------PKPIGVMEHPHRSNI 108 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------CCCceeccCccccce
Confidence 4577889999999999999999999999999999874211110 01111 123466899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-eeE--
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLR-- 499 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-~~~-- 499 (670)
.|++|...+++|.+|..+++|.+.|+.+.+.+.++.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ++.
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence 9999999999999999999999999999888777653 23589999999999999999999999999997644 332
Q ss_pred EecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcE-EEE---EecC---CCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 500 IMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGEC-VRI---FIGH---RSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~-~~~---~~~h---~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
...........+.|+|.. .+|++.+..+-+-+||++.... +.. +.+- ...-.++.|+|+|..|.+--....-
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 223345567888999865 5777888889999999985432 211 1111 1223678899999999887666667
Q ss_pred EEEeCCCCeeeEEeeCCC-------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc--------ccCCccc
Q 005913 572 MMWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE--------KSGTNRL 636 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~-------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------~~~~~~~ 636 (670)
.+||+-+.++..--..|. ..+.+++|.-|- -+++|+.+-.|++|.+........... .+.....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 788887765543222332 246778887554 499999999999999976543322111 0111112
Q ss_pred ccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 637 ~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
..+..+.+|.+-+..|.|+|.+.+|++.+..
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccchh
Confidence 3455688999999999999999999887654
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.5e-17 Score=178.83 Aligned_cols=283 Identities=20% Similarity=0.280 Sum_probs=202.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
+.-..+.|+|-...++++.....|+|||......... +..-......|+.+.+-.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~-------------------------F~n~~~~~t~Vs~l~liN 1119 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG-------------------------FDNGAFPDTRVSDLELIN 1119 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceecc-------------------------ccCCCCCCCccceeeeec
Confidence 3466788999999999998888999999875322110 000012346788888865
Q ss_pred C--CCEEEEEeCCCeEEEEeCCC-----CceeEEeeC-------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 432 L--GDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 432 ~--~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
. ..++++|+.||.|+||+--. .+.+..+.+ ..+.-.-+.|.....+++++|.-+.|+|||.+....
T Consensus 1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 3 34789999999999997321 122222221 111123467888666777777789999999998777
Q ss_pred eEEec-ccCCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCc---EEEEEecCCCC--eEEEEEcCCCCE-EEEEECCC
Q 005913 498 LRIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSM--ILSLAMSPDGRY-MASGDEDG 569 (670)
Q Consensus 498 ~~~~~-~~~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~--I~~l~~sp~g~~-l~sg~~dg 569 (670)
+..+. +....|+++.-+ +.|+.+++|..||.||+||.+... .+...+.|... |..+.+.+.|-- |++|+.||
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 66654 444556766554 457999999999999999998643 46777888887 999999997764 99999999
Q ss_pred eEEEEeCCCCeee--EEeeCCC--c-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 570 TIMMWDLASGRCV--TPLMGHT--S-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 570 ~I~iwDl~~~~~~--~~~~~h~--~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
.|++||++..... ..+..|. + .++++..+++..++|+|+. +.|+||++.......... .-..+..
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~---------n~~F~~q 1349 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY---------NPGFMGQ 1349 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc---------CcccccC
Confidence 9999999975222 2223343 3 5899999999999999999 999999987643221110 0112233
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..+++.|++|+|.-.+||+|+.|.+
T Consensus 1350 ~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred cCCCcceeeecchhHhhhhccCCce
Confidence 4567899999999999999988764
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=6e-17 Score=176.29 Aligned_cols=238 Identities=17% Similarity=0.235 Sum_probs=182.5
Q ss_pred CccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce--eE----EeeCCCccEeEEEEecCCC--EEEEEECCCcEEEE
Q 005913 420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN--LV----CYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIW 490 (670)
Q Consensus 420 h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~--~~----~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lw 490 (670)
-...|.|+.|+|.. .+++.|+.+|+|.+||++.+.. .. ....|..+++.+.|..+.. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45789999999965 5677888999999999987655 22 2335899999999987544 49999999999999
Q ss_pred ECCCCce-eE-----Eec------ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC---CC-----cEEEEEecCCCC
Q 005913 491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSM 549 (670)
Q Consensus 491 d~~~~~~-~~-----~~~------~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~ 549 (670)
+++.... .. ... .....+++++|.+ +-+.+++|+.+|.|.--+.. .+ +.+..+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875332 11 111 1224588999987 45678899999998874332 22 223456678899
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||- ...++++..||.|.|||+.....
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~---- 476 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE---- 476 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----
Confidence 9999999987766666669999999988 77788888888888999999995 45788888999999999977542
Q ss_pred ccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCCC
Q 005913 628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 670 (670)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs~ 670 (670)
.++.+.+......+.+.|+++|++|++|...|++
T Consensus 477 ---------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~ 510 (555)
T KOG1587|consen 477 ---------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT 510 (555)
T ss_pred ---------CCcccccccccccceeecCCCCcEEEEecCCCcE
Confidence 2344444456678888999999999999999863
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=162.52 Aligned_cols=232 Identities=23% Similarity=0.354 Sum_probs=182.3
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc---
Q 005913 352 NGLNCASIS-------QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS--- 421 (670)
Q Consensus 352 ~~V~~l~fs-------~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--- 421 (670)
..|...+|- |+.+++|+.+.+.-|++||.-+.+..+... -..|.
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--------------------------~ydh~de~ 158 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------------------------AYDHQDEY 158 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh--------------------------hhhhHHhh
Confidence 345555553 788999999999999999987644332211 11222
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEe-------eCCCccEeEEEEecC-CCEEEEEECCCcEEEEEC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM 492 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~ 492 (670)
....+++|+|||..|++|- ..+|+++|+ +.+.....+ .+..+-|.+++|+|. ...+++|+...++-||.-
T Consensus 159 taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 159 TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 2345899999999999875 568999999 444332221 123667899999994 458999999999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC-CcEEEEEecCCC-CeEE--EEEcCCCCEEEEEEC
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS-GECVRIFIGHRS-MILS--LAMSPDGRYMASGDE 567 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~~~~~~h~~-~I~~--l~~sp~g~~l~sg~~ 567 (670)
....++..+-+|.+.|+.+.|+++|+.|++|.. |..|..||++. +.++..+..|.+ .-.. ....|+|++|++|+.
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 999999999999999999999999999999885 67899999985 455555666654 2333 445789999999999
Q ss_pred CCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913 568 DGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 568 dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
||.|++||+.. |..+..+..|+..|..++++|--.++++++..
T Consensus 318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 99999999998 77788888899999999999998888888765
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=7.6e-19 Score=188.33 Aligned_cols=264 Identities=24% Similarity=0.409 Sum_probs=206.0
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.+|.+.|.|+.|...|.++++|+.|..|+||...+ ......+.||++.|+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd 237 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD 237 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence 467888999999999999999999999999999765 3355667899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----c
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----A 502 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~----~ 502 (670)
++.+.+..+++++|.|..|++|.+..+..+..+.+|++.|++++|+|.. +.+.||++++||.+ ..+.... .
T Consensus 238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLK 312 (1113)
T ss_pred hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999965 67889999999987 1111111 1
Q ss_pred -ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCe
Q 005913 503 -GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 503 -~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
....-+.++.|..++.-++||+.|+.-+.|.+..-. .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ 386 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch
Confidence 122456778888889999999999998888764211 11111111112211 2466777788899999999999
Q ss_pred eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
.++.+.+|...++.+.++| +..+..+++.||...|||+..+.++.... .....+...+||++|.
T Consensus 387 l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---------------~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 387 LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---------------IGHGKLVDGKFSQDGT 451 (1113)
T ss_pred hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee---------------cccceeeccccCCCCc
Confidence 9999999999999999999 45567789999999999998876543221 2244566677777776
Q ss_pred EEEEe
Q 005913 660 LFAAG 664 (670)
Q Consensus 660 ~La~g 664 (670)
.++..
T Consensus 452 s~~ls 456 (1113)
T KOG0644|consen 452 SIALS 456 (1113)
T ss_pred eEecC
Confidence 65543
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=5.1e-16 Score=153.78 Aligned_cols=236 Identities=18% Similarity=0.281 Sum_probs=182.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..+..+.|+.|...|.+|+.||+ ++|+...... ..........|.-+-|+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----------------------------~~~~~~~~~~IvEmLFS- 55 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----------------------------CFSKDTEGVSIVEMLFS- 55 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHH----------------------------hhcccCCCeEEEEeecc-
Confidence 34677779999999999999985 6777654211 00011122345555666
Q ss_pred CCCEEEEEeCC--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---cCC
Q 005913 432 LGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLS 506 (670)
Q Consensus 432 ~~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---~~~ 506 (670)
..++|..+.+ +.+++++++....+..+. ...+|.++.++. +.++++-.+ .|+|||+++.+.+..+.. +..
T Consensus 56 -SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 56 -SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPK 130 (391)
T ss_pred -cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCcc
Confidence 5566655544 348899988777776655 455788888864 456666554 499999999998887753 444
Q ss_pred CeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEeCCCCeeeE
Q 005913 507 DVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVT 583 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~-I~iwDl~~~~~~~ 583 (670)
.+.++++++.+.|++.-+ ..|.|.+||+.+-+.+..+..|.+++.|++|+++|.+|||+++.|+ ||||++.+|+.+.
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 566666666677998743 4689999999999999999999999999999999999999999997 7899999999999
Q ss_pred EeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 584 ~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+++... ..|++++|+|++++|++.|..++|+||.+....
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 998544 568999999999999999999999999997654
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.7e-15 Score=160.04 Aligned_cols=264 Identities=14% Similarity=0.229 Sum_probs=173.8
Q ss_pred cceecCCCCC-CceeEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 330 NRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 330 ~~~~l~~~~~-ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
+.+.+|.... ............+....++++|++++|++++ .++.|.+|++...+..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------------------- 70 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------------------- 70 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------
Confidence 3445544321 2223333444556788999999999987764 5788999998631110
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s 482 (670)
..... ....+....++|+|++++|++++. ++.|.+|++.+.. .+..+. +.....+++++|+|+++++++
T Consensus 71 ----~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 71 ----TFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ----EEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEee
Confidence 00010 112234568999999998887764 8899999997432 222222 223466788999999886655
Q ss_pred -CCCcEEEEECCCCceeEE-----e-cccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC--Cc--EEEEEecC----
Q 005913 483 -HDRTARIWSMDRIQPLRI-----M-AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH---- 546 (670)
Q Consensus 483 -~dg~v~lwd~~~~~~~~~-----~-~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~~--~~~~~~~h---- 546 (670)
.++.|.+||+++...+.. . .........++|+|+++++++++. +++|.+||+.. ++ .+..+..+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 569999999976332210 1 112345678999999999988876 89999999973 32 23333221
Q ss_pred --CCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCC---CcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913 547 --RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGH---TSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT 619 (670)
Q Consensus 547 --~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h---~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~ 619 (670)
......+.++|+|++++++. .++.|.+|++........+.++ ......+.|+|+|++|+++.. +++|.+|++.
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11234688999999999885 4789999998654321122222 124567899999999998775 8999999986
Q ss_pred C
Q 005913 620 T 620 (670)
Q Consensus 620 ~ 620 (670)
.
T Consensus 305 ~ 305 (330)
T PRK11028 305 G 305 (330)
T ss_pred C
Confidence 4
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=8.2e-17 Score=156.51 Aligned_cols=232 Identities=21% Similarity=0.304 Sum_probs=185.8
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC-CCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM-DRI 495 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~-~~~ 495 (670)
-..+|+|.+|++|+..++++.....|.||...... ...+++.|...|++|+|+|..+.|++|+.|+..++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45799999999999999999999999999987554 56788899999999999999999999999999999998 333
Q ss_pred --ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 496 --QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 496 --~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
++.-.+..+...++||.|+|+++.|++|+.-+.|.+|-....+- ..+-..+...|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 45556667889999999999999999999999999998765432 123345678899999999999999999999
Q ss_pred eEEEEeCC------------------CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc
Q 005913 570 TIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631 (670)
Q Consensus 570 ~I~iwDl~------------------~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 631 (670)
..++|..- -|..+.++....+.|..+.|+|+|..|+-.+.|+++.+=|......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~-------- 240 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE-------- 240 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--------
Confidence 99999741 1234444445568899999999999999999999999998776532
Q ss_pred CCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 632 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 632 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
.+.+.....-|..++.|-..+..+++|-
T Consensus 241 ------~v~~~~~~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 241 ------RVQSVATAQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred ------hccchhhccCCceeeEeecCCceeecCC
Confidence 1222223335677777776666555443
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=8.3e-17 Score=156.48 Aligned_cols=230 Identities=18% Similarity=0.244 Sum_probs=182.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.++-...+|+|.+|++|++.+|++.....|.||...... ......++..|...|+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT 59 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence 444456789999999999999999999999999976421 1345677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee----
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---- 498 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~---- 498 (670)
++.|+|..+.|++|+.|..-++|.... .+....+..++..++++.|+|.++.||+||..+.|.+|-++...--
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 999999999999999999999999833 2345556678999999999999999999999999999988753321
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-----C-------------CcEEEEEecCCCCeEEEEEcCCCC
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~-------------~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
.+-..+.+.|.+++|||++-.+++|+.|+.+|++..- . |+.+..+....+.+..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 1233567889999999999999999999999998642 1 122333435567899999999999
Q ss_pred EEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCC
Q 005913 561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE 600 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~ 600 (670)
.|+-.+.|+.+.+-|..... .+.......-+..++.|-.+
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 99999999999999987654 23333323356667777543
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=9.4e-17 Score=175.31 Aligned_cols=220 Identities=19% Similarity=0.233 Sum_probs=156.7
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcee--EEeeCCCccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~ 488 (670)
..+..|...+.+.+|+|+|+.|+.++.+ ..|++||+.++... ..+.+| ...++|+|+|+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3455678889999999999999887653 47999999877543 223333 34689999999988765 678665
Q ss_pred EE--ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 489 lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
|| |+.++. ...+..+...+.+..|+|+|+.|+.++ .+|...||++.. +.....+ .+.+ .+..|+|+|++|+.
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence 55 665554 445566767788999999999877655 567888887643 2223333 3443 46789999999998
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
++.++ +.+||+.++........+ ...++.|+|+|++|+.++.+|.+.+|++..... ..+..+..
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-------------~~~~~l~~ 413 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-------------RFKARLPG 413 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-------------CceEEccC
Confidence 87765 566999988654322222 335688999999999999999999888643110 12345556
Q ss_pred CCCCeEEEEEecC
Q 005913 645 KSTPVYSLQFSRR 657 (670)
Q Consensus 645 ~~~~V~~l~fs~~ 657 (670)
+...+...+|+|.
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 6677888899985
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=157.64 Aligned_cols=212 Identities=17% Similarity=0.279 Sum_probs=170.6
Q ss_pred eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+.+|.+.|..++|+| +...+|+|+.|.+|.||.+........ .......+.||...|-
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG 135 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence 568899999999998 577899999999999999875332211 1246778999999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
-++|+|.. +.|++++.|.+|.+|++.+++.+..+. |...|+++.|+.+|.+|++++.|+.|||||.++++.+..-.+|
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 99999976 478899999999999999999998888 9999999999999999999999999999999999999887777
Q ss_pred CCC-eeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcEE---EEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeC
Q 005913 505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL 576 (670)
Q Consensus 505 ~~~-v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl 576 (670)
.+. -..+.|-.+|..+-||. +++.+-+||..+-... ..+. ....|.---|.|+.+.++.+ -.|+.|+-|.+
T Consensus 215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 653 45566778888555554 4778999997654332 2232 33456666678888877654 57999999998
Q ss_pred CCCee
Q 005913 577 ASGRC 581 (670)
Q Consensus 577 ~~~~~ 581 (670)
....+
T Consensus 294 t~d~P 298 (472)
T KOG0303|consen 294 TNEPP 298 (472)
T ss_pred cCCCc
Confidence 76553
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.9e-17 Score=157.51 Aligned_cols=191 Identities=21% Similarity=0.338 Sum_probs=155.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecccC-CCe
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV 508 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~-~~v 508 (670)
..+|++...|+|++||..+++.+..++++...+..+.|.. ..+.+.+|+.||+|++||++..... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888899999999999999999999999999999987 5678999999999999999875443 3344454 467
Q ss_pred eEEEEcCCCCEEEEEE----cCCcEEEEECCCCcE-EEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCe-
Q 005913 509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGR- 580 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~-~~~~-~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~- 580 (670)
.|++.+-+++.+++|+ .+-.|.+||+|..+. ++.+ ..|...|+++.|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888777888999886 467899999998776 5544 57999999999999 56799999999999999997542
Q ss_pred --eeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccc
Q 005913 581 --CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 581 --~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+...-.|.+.|.++.|..++ ..|.+-+..++..+|+++.+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 222233577789999998776 45888889999999999877643
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3e-16 Score=150.49 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=179.8
Q ss_pred ecCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 348 INTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~-----~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
+.|.-+++.+-|.|+. .+||+. +-.+|+|.+........... . -....-..+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~------------~-------L~~~kns~~~a 151 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQS------------V-------LNNNKNSEFCA 151 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhh------------h-------hccCcccccCC
Confidence 5777889999999986 355554 45899999874211110000 0 00011234678
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCce
Q 005913 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
++++..|+. +-++|.++|-|.++.|||++++.. ...+-.|...|.+++|...+ ..||++|.||.||++|++....
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 999999987 446888999999999999998633 55677899999999999854 5699999999999999987665
Q ss_pred eEEeccc---CCCeeEEEEcC-CCCEEEEEEcC-CcEEEEECCC-CcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCe
Q 005913 498 LRIMAGH---LSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGT 570 (670)
Q Consensus 498 ~~~~~~~---~~~v~~v~~~p-~~~~l~tgs~d-g~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~ 570 (670)
..++... ..+...++|++ +-+++|+-..| ..|.|.|++. ..++..+.+|.+.|..|+|.|. +..|+++|+|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 5444322 35677889986 45788875554 5799999985 5678889999999999999995 568999999999
Q ss_pred EEEEeCCCCee------eEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEE
Q 005913 571 IMMWDLASGRC------VTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKL 615 (670)
Q Consensus 571 I~iwDl~~~~~------~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~i 615 (670)
+.+||+.+.-. +..+. -.+.|..+.|++ .+.+++.+... ++.|
T Consensus 312 aliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred EEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 99999975321 22222 457899999996 56677777643 4443
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=168.30 Aligned_cols=271 Identities=19% Similarity=0.229 Sum_probs=216.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
+-..+.++.+|++|+.|+..|.|..+|+.+..... ...-...|.++.|..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------------------------Ei~v~Etv~Dv~~LHn 181 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------------------------EINVMETVRDVTFLHN 181 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee-----------------------------eeehhhhhhhhhhhcc
Confidence 44567889999999999999999999988633221 1122357888999988
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
..++|++- ...++|||-. +..+.+++.|. .|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..++
T Consensus 182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK 258 (545)
T ss_pred hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence 88888875 5689999966 77888888665 688999999998999999999999999999999999888888999999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V 592 (670)
-+|-...+-+|...|+|.+|......++..+..|.++|.+|++.++|+|++|.|.|..++|||+++-..+.++.. ..+.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 999989999999999999999999998888889999999999999999999999999999999998877766654 4566
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+++|..| +||.+ ....|.||.=...... .. ...+-......+|..+.|.|-..+|.+|-..|
T Consensus 338 ~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~-------~~---~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 338 SNLSLSQKG-LLALS-YGDHVQIWKDALKGSG-------HG---ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ccccccccc-ceeee-cCCeeeeehhhhcCCC-------CC---CcchhhhccCcccccceeccHHHeeeccccCC
Confidence 788888665 34444 4447999963322110 00 11111122234899999999999998887655
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=8.8e-15 Score=154.56 Aligned_cols=260 Identities=15% Similarity=0.216 Sum_probs=171.4
Q ss_pred EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe-CCCeE
Q 005913 367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTI 445 (670)
Q Consensus 367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s-~Dg~I 445 (670)
++...++.|.+|++...+. ......+. +.+....++++|++++|++++ .++.|
T Consensus 6 ~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i 59 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA-------------------------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRV 59 (330)
T ss_pred EEcCCCCCEEEEEECCCCc-------------------------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcE
Confidence 3446789999999853111 11222222 335567889999999887664 57889
Q ss_pred EEEeCCC-Cce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCC-C---ceeEEecccCCCeeEEEEcCCC
Q 005913 446 RLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDR-I---QPLRIMAGHLSDVDCVRWHINC 517 (670)
Q Consensus 446 ~lwd~~~-~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~-~---~~~~~~~~~~~~v~~v~~~p~~ 517 (670)
.+|++.. +.. ..... .......++|+|+++++++++ .++.|.+|+++. + ..+..+. +.....+++++|++
T Consensus 60 ~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 60 LSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred EEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 9999973 322 12222 233456899999999988876 478999999964 2 2223332 23456778999999
Q ss_pred CEEEEEE-cCCcEEEEECCCCcEEEE-----Ee-cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCC--C--eeeEEe
Q 005913 518 NYIATGS-SDKTVRLWDVSSGECVRI-----FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--G--RCVTPL 585 (670)
Q Consensus 518 ~~l~tgs-~dg~I~iwd~~~~~~~~~-----~~-~h~~~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~--~--~~~~~~ 585 (670)
+++++++ .++.|.+||+.+...+.. .. ........++|+|+|++++++.. ++.|.+||+.. + +.+..+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 9987655 568999999976432210 11 12234678999999999988876 89999999973 3 233333
Q ss_pred eCC------CcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 586 MGH------TSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 586 ~~h------~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
..+ ......+.++|+|++++++. .+++|.+|++....... ..+...++. .....++|+|+|
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~~-~~p~~~~~~~dg 285 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPTE-TQPRGFNIDHSG 285 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEecc-ccCCceEECCCC
Confidence 221 11233588999999998885 47899999997643211 112222222 234578999999
Q ss_pred cEEEEeeC
Q 005913 659 LLFAAGAL 666 (670)
Q Consensus 659 ~~La~gs~ 666 (670)
++|+++..
T Consensus 286 ~~l~va~~ 293 (330)
T PRK11028 286 KYLIAAGQ 293 (330)
T ss_pred CEEEEEEc
Confidence 99988775
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.7e-16 Score=169.85 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=163.3
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
.+++++..... ...+..+...+.+.+|||||+.||.++.+ ..|.+||+.+...
T Consensus 185 ~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------------------- 240 (429)
T PRK01742 185 EVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------------------- 240 (429)
T ss_pred EEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce----------------------
Confidence 44454433322 23455667789999999999999987643 4699999864211
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEe-CCCeEEEE--eCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-C
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H 483 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s-~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~ 483 (670)
..+..+.+| ..+++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+.+..|+|+|..++.++ .
T Consensus 241 ----~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 241 ----KVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred ----EEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECC
Confidence 112222333 33679999999888764 67876555 665554 444556677788999999999877665 5
Q ss_pred CCcEEEEECCCC-ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 484 DRTARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 484 dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
++...+|+++.. .....+ .+.. .+.+|+|+|++|++++.++ +.+||+.+++.......+ ...++.|+|+|++|
T Consensus 313 ~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i 386 (429)
T PRK01742 313 SGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMI 386 (429)
T ss_pred CCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEE
Confidence 788888876532 222333 3433 4678999999999887765 666999988765433222 34567899999999
Q ss_pred EEEECCCeEEEEeC--CCCeeeEEeeCCCcceEEEEEcCC
Q 005913 563 ASGDEDGTIMMWDL--ASGRCVTPLMGHTSCVWTLAYSCE 600 (670)
Q Consensus 563 ~sg~~dg~I~iwDl--~~~~~~~~~~~h~~~V~sl~~s~~ 600 (670)
+.++.+|.+.+|++ .+|..+..+..|.+.+...+|+|-
T Consensus 387 ~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 387 IYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999998888876 368888888888888999999984
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=165.80 Aligned_cols=232 Identities=23% Similarity=0.419 Sum_probs=175.7
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
..-..+.|+|.+|.++|.|+++++++..+.+|+.||+|+.|++..... ..+. .........+
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~ds---------~dp~vl~~~l 392 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDDS---------YDPSVLSGTL 392 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------cccc---------cCcchhccce
Confidence 445677899999999999999999999999999999999999762100 0000 0012344568
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCC-CEEEEEECCCcEEEEECC
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~ 493 (670)
.||.+.|+.+++|+....|++|+.||++++|....... .++. .|..| .++.+-... ...++...-+.-.+.+++
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence 89999999999999999999999999999999876655 3332 23332 344443222 222222233344444555
Q ss_pred CCceeEEecc-------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 494 RIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 494 ~~~~~~~~~~-------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
..+.+..+.. ....+.-+.++|+....+++..|+.|+++|..++..+.....|...++++++.|+|.+|++++
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 5555554432 124577889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCC
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHT 589 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~ 589 (670)
.||.+++|.+....++.....|.
T Consensus 551 ~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceeehhhccchheeecccccc
Confidence 99999999998888877766664
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.3e-14 Score=141.45 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=189.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
..+++|+.|...+++|..+| .+||+++..+...... +....-.+.-+-|- .
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~ 58 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S 58 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence 45599999999999997766 7999988633211110 00000112222222 3
Q ss_pred CEEE-EEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEecccC
Q 005913 434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL 505 (670)
Q Consensus 434 ~~L~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~~~~~ 505 (670)
++|+ +|+.+ ..|.|||=....++..+. ...+|.++.+.++ .+++. ..+.|++|... +.+.++.+....
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence 4443 33332 469999966566666665 5778999999866 45544 35789999987 666676665333
Q ss_pred --CCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEeCCCC
Q 005913 506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG 579 (670)
Q Consensus 506 --~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~-I~iwDl~~~ 579 (670)
..+.+++-+.+..+|+. |-.-|.|.|-|+...+. ...+..|.+.|.|++.+-+|..+||++..|+ |+|||..+|
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 23333333334445555 55679999999986554 4677899999999999999999999999997 899999999
Q ss_pred eeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccC-C--cc------cccccccCCCCCC
Q 005913 580 RCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-T--NR------LRSLKTLPTKSTP 648 (670)
Q Consensus 580 ~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~--~~------~~~~~~~~~~~~~ 648 (670)
..+.+++.. ...|++++|||++.+|+++|..|+|+|+.+.............. . .. ...+..+.-..++
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~ 294 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT 294 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCC
Confidence 999998743 36799999999999999999999999999987543322000000 0 00 0112233334667
Q ss_pred eEEEEEecC-CcEEEEeeCCCC
Q 005913 649 VYSLQFSRR-NLLFAAGALSKT 669 (670)
Q Consensus 649 V~~l~fs~~-~~~La~gs~dgs 669 (670)
..-++|..+ +.+++.+. ||+
T Consensus 295 ~~~~~fg~~~nsvi~i~~-Dgs 315 (346)
T KOG2111|consen 295 QCIIAFGSETNTVIAICA-DGS 315 (346)
T ss_pred cEEEEecCCCCeEEEEEe-CCc
Confidence 888899888 55555544 353
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.2e-16 Score=160.90 Aligned_cols=196 Identities=26% Similarity=0.347 Sum_probs=159.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG- 503 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~- 503 (670)
.+++|+++|..|++|+.||++|+|++.....+.....|...|.++.|+|||..+++.+.| ..+||+.+++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999988888888888899999999999999999999999 999999999977665542
Q ss_pred -cCCCeeEEEEcCCC---CEEEE--EEcCCcEEEEECCCCcE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 504 -HLSDVDCVRWHINC---NYIAT--GSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 504 -~~~~v~~v~~~p~~---~~l~t--gs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
.......+.|+.++ .+.+. ....+.|+.||+....- .+........|++++.|++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22346678888766 33332 33456777777653221 122222335699999999999999999999999
Q ss_pred EEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 573 MWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 573 iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
|++..+-+++...+ .|...|+.+.|+|+.+++++.+.|....|..+.-.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999888776654 79999999999999999999999999999887663
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=2.7e-16 Score=148.97 Aligned_cols=240 Identities=19% Similarity=0.276 Sum_probs=183.6
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
....+.+|.+.|+++.|..+++ |.+|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455679999999999987665 8999999999999999999888888 56788988888887 4688899999999999
Q ss_pred CCCCceeEE-------------------------------------------------e----cccCCCeeEEEEcC-CC
Q 005913 492 MDRIQPLRI-------------------------------------------------M----AGHLSDVDCVRWHI-NC 517 (670)
Q Consensus 492 ~~~~~~~~~-------------------------------------------------~----~~~~~~v~~v~~~p-~~ 517 (670)
+.-...+.. . .+..+.+.|..+.. .+
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 864211000 0 01123455555432 22
Q ss_pred C--EEEEEEcCCcEEEEECCCCcE----------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--eee-
Q 005913 518 N--YIATGSSDKTVRLWDVSSGEC----------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCV- 582 (670)
Q Consensus 518 ~--~l~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~--~~~- 582 (670)
. ++++|..+|.|.+||+.++.. +.....|..+|.++.+.+.-..=++|+.+..+..|++... .+.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 467788999999999998833 3334578899999999986666678888888999988633 221
Q ss_pred -EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 583 -TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 583 -~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
..+.--.-.|..+..-||++++||+|.|+.||||+..+.. ++..+..|...|++++|+|+..++
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---------------pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---------------PLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---------------chhhhhhhhcceeEEEeCCCCchh
Confidence 1222223457888999999999999999999999998864 466777888999999999999999
Q ss_pred EEeeCCCC
Q 005913 662 AAGALSKT 669 (670)
Q Consensus 662 a~gs~dgs 669 (670)
|+|+.|+.
T Consensus 309 AaaskD~r 316 (323)
T KOG0322|consen 309 AAASKDAR 316 (323)
T ss_pred hhccCCce
Confidence 99999874
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.2e-15 Score=140.09 Aligned_cols=197 Identities=20% Similarity=0.355 Sum_probs=153.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
..|.+-+|+|.+++|++|+.+|+|.+..+.. ...+...++|.++|..++|. ..++++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4566778999999999999999999998763 22456668999999999998 33566654 59999998
Q ss_pred CCCCce------e-------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 005913 492 MDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (670)
Q Consensus 492 ~~~~~~------~-------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~ 558 (670)
.+.... + +.-......|+++-..|..+-+++++.|+.++.||+.+|+..+.+++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 653211 1 110112346899999999998888889999999999999999999999999999998555
Q ss_pred CCEEEEEECCCeEEEEeCCCCeeeEEeeC---------CC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 559 GRYMASGDEDGTIMMWDLASGRCVTPLMG---------HT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 559 g~~l~sg~~dg~I~iwDl~~~~~~~~~~~---------h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
...+++|++||++++||+++++++..+.. |. ..|-+++- +..+|++|+. -.+.+|++.+.+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t 240 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSEST 240 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCce
Confidence 66789999999999999999999887743 22 23455554 5567887764 46899999987653
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=9.6e-16 Score=157.62 Aligned_cols=210 Identities=16% Similarity=0.232 Sum_probs=164.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (670)
Q Consensus 363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D 442 (670)
...++.++.||.+.|-+-.. +.-+....|.+.|.+-.|+|+|.-|+++++|
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-----------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GED 125 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-----------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGED 125 (737)
T ss_pred cceEEEEcCCceEEEecccc-----------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCC
Confidence 45677888999998887442 2334456799999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t 522 (670)
|.|++|+-.. -...++-....+|.|++|.|+...++.+. .+.+.+=.+.....+-..+.|.+-|.|+.|++.++.+++
T Consensus 126 G~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 126 GVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred ceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 9999999653 22223333567899999999887766553 356777777666666677889999999999999999999
Q ss_pred EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
|+.|-..++||.. |..+..-..|..+|++++|+|+ ..++.++. .++++ -....+.|..++||+||.
T Consensus 204 gGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGT 269 (737)
T ss_pred cCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCc
Confidence 9999999999964 6666666789999999999999 55555543 23331 123457899999999999
Q ss_pred EEEEEECCCcEEEEe
Q 005913 603 LLASGSADCTVKLWD 617 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd 617 (670)
.+++|+..|.+.+=.
T Consensus 270 Q~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 270 QATCGTSTGQLIVAY 284 (737)
T ss_pred eeeccccCceEEEee
Confidence 999999999876644
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.6e-16 Score=154.88 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=153.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (670)
Q Consensus 355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (670)
.+++|+.+|..||+|+.||++|||++... ........|.+.|.++.|+|||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence 78999999999999999999999997642 23334567899999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCC---CE--EEEEECCCcEEEEECCCCc-----eeEEec
Q 005913 435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG---HY--FASSSHDRTARIWSMDRIQ-----PLRIMA 502 (670)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g---~~--l~s~s~dg~v~lwd~~~~~-----~~~~~~ 502 (670)
+|++.+.| ..+||+++++..+.... ..+.....+.|+.++ .+ ++....-+.|+.|++.... +.+...
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 99999999 89999999986655443 234456678888776 33 3333445667776653221 122222
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
.....|.+++.+++|++++.|+.||.|-|++..+-+++... +.|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 33467999999999999999999999999999988877655 47889999999999999999999888888877653
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1.2e-16 Score=162.06 Aligned_cols=221 Identities=19% Similarity=0.255 Sum_probs=191.9
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
-.-+.+.++.+|++|+.|+.-|.|..+|+.++.....+.. ...|.++.|..+.++||++ ....++|||-. |..+..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence 3457899999999999999999999999999888777664 5579999999888888776 55789999965 4556666
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
..| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|...+..+
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 655 6899999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
+..+..|.++|.++++.++|++++|+|.|..|+|||+..... +.++.+ ..+...++||..|.+.
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---------------l~t~~t-p~~a~~ls~SqkglLA 349 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---------------LHTYRT-PHPASNLSLSQKGLLA 349 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---------------cceeec-CCCcccccccccccee
Confidence 999999999999999999999999999999999999988542 233334 5678889999988644
Q ss_pred E
Q 005913 662 A 662 (670)
Q Consensus 662 a 662 (670)
+
T Consensus 350 ~ 350 (545)
T KOG1272|consen 350 L 350 (545)
T ss_pred e
Confidence 3
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=142.41 Aligned_cols=228 Identities=17% Similarity=0.253 Sum_probs=173.0
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~ 499 (670)
..+..+.|+.+...|..|+.|| -++|+................|..+-|+ ...+|..+.+ +.++++++.....+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4566777999999999999998 6888877655433223334455556665 4456666544 459999998877776
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASG--DEDGTIMMW 574 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~sg--~~dg~I~iw 574 (670)
.+. ....|.+|.++. +.|+++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.++|-- ...|.|.+|
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 655 457889998854 456665544 499999999998877654 33446666666667788863 356999999
Q ss_pred eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc-EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 653 (670)
|..+-+.+..+..|.+++-+++|+++|.+|||+|..|+ |||+.+..++...+.. -.+....|++++
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR-------------RG~~~~~IySL~ 225 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR-------------RGTYPVSIYSLS 225 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee-------------CCceeeEEEEEE
Confidence 99999999999999999999999999999999999997 7899999887654332 112355799999
Q ss_pred EecCCcEEEEeeCCCC
Q 005913 654 FSRRNLLFAAGALSKT 669 (670)
Q Consensus 654 fs~~~~~La~gs~dgs 669 (670)
|+|++++|++.+..+|
T Consensus 226 Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTET 241 (391)
T ss_pred ECCCCCeEEEecCCCe
Confidence 9999999999998776
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=3e-14 Score=159.36 Aligned_cols=260 Identities=18% Similarity=0.241 Sum_probs=184.5
Q ss_pred eEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
..-.++.|...|..++.++. +.++++|+.||+|++|++...... .+..+...++....
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~~ 1098 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPEG 1098 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEeccC
Confidence 34566778888888888765 599999999999999998752211 01122333444467
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee-----EEeeCC-Ccc-EeEEEEec-CC-CEEEEEECCCcEEEE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NL-----VCYKGH-NYP-VWDVQFNP-QG-HYFASSSHDRTARIW 490 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~-----~~~~~h-~~~-V~~l~~sp-~g-~~l~s~s~dg~v~lw 490 (670)
+.+.++.+.+.++.+|.++.||.|++.+++... .. .....+ .+. |..-+|.. .+ ..++.+..-+.+..|
T Consensus 1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 889999999999999999999999999988621 11 111112 122 33333333 23 367888888999999
Q ss_pred ECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCC---CCEEEE
Q 005913 491 SMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD---GRYMAS 564 (670)
Q Consensus 491 d~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~---g~~l~s 564 (670)
|++.......++ ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|+.+..+|- ....++
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence 998766554443 334789999999999999999999999999999888877664 45578888887773 245554
Q ss_pred EE--CCCeEEEEeCCCCeeeEEeeCC-------------------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 565 GD--EDGTIMMWDLASGRCVTPLMGH-------------------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 565 g~--~dg~I~iwDl~~~~~~~~~~~h-------------------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
++ ..+.|.+|++.+|.+...+... .-....+.+...+..+.+|+.|+.|+.||......
T Consensus 1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 44 5788999999998766555322 11122334444556899999999999999876543
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=6.4e-15 Score=152.01 Aligned_cols=193 Identities=21% Similarity=0.345 Sum_probs=153.6
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC---------
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI--------- 495 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~--------- 495 (670)
.|.+--|+.|-..|.|.+.|....+..+.+.. ....|+++.|-| +...|+++-.+|.+++||....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 34556688888889999988765332221211 246799999999 4556777778999999976410
Q ss_pred -------------------ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 005913 496 -------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (670)
Q Consensus 496 -------------------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 556 (670)
.|+..+.-..+.|+..+|+|||++||+.+.||.+||+|..+.+.+..++..-+...|++||
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 1222222234578889999999999999999999999999998888888888899999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC-----------------------------------CC
Q 005913 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----------------------------------EG 601 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~-----------------------------------~g 601 (670)
|||+||++|++|.-|.||.+...+.+..-++|.+.|..++|.| ++
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~ 421 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG 421 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence 9999999999999999999999999999999999999999983 01
Q ss_pred -------------CEEEEEECCCcEEEEeCCCCc
Q 005913 602 -------------SLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 602 -------------~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
-.+.+.+.|-.+++||+....
T Consensus 422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CcccccccccceEEEeecccccceEEEEecchhh
Confidence 157788899999999997643
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=3.8e-15 Score=155.73 Aligned_cols=240 Identities=20% Similarity=0.264 Sum_probs=172.6
Q ss_pred EcCCCCEEEE--EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC-CCCE
Q 005913 359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF 435 (670)
Q Consensus 359 fs~d~~~La~--g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~ 435 (670)
|+-+..++|+ .+..|.|-||+++..+...- +. .-.. .....|+.+.|.| |...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD--------------------gv--~p~l--~Ngt~vtDl~WdPFD~~r 642 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD--------------------GV--MPGL--FNGTLVTDLHWDPFDDER 642 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc--------------------cc--cccc--ccCceeeecccCCCChHH
Confidence 3444556664 45789999999986432210 00 0001 1336799999999 5568
Q ss_pred EEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913 436 ILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
|++++.||.|++|.+..+ ..-..+..|...|+++.|+| -...+++++.|-+|++||+.+++....+.+|.+.
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence 999999999999998754 34567888999999999999 4568999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCC-CCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCC--
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLASG-- 579 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~-~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~-- 579 (670)
|..++|+|+|+.+++.+.||+|++|..+++.. ++.-.+.. ..--.|.|.-+|+++++.+.| ..|.+||..+-
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence 99999999999999999999999999987643 32222111 223457788899999887765 46888887542
Q ss_pred eeeEEeeCCCc-ceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc
Q 005913 580 RCVTPLMGHTS-CVWTLAYSCEGS-LLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 580 ~~~~~~~~h~~-~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~ 622 (670)
.++.+..-... .+.--.+.+|.+ ++++|-.|..|.+|.+-...
T Consensus 803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 23332211110 011112344544 67788899999999986644
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=9.5e-14 Score=151.42 Aligned_cols=220 Identities=17% Similarity=0.151 Sum_probs=153.8
Q ss_pred eecCccCEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCC--cEEEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIW 490 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg--~v~lw 490 (670)
+..+...+.+.+|||||+.|+..+ .+..|++|++.+++.... ......+....|+|||+.++.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 345667899999999999988654 345799999987754332 2223334568999999988765 4444 58899
Q ss_pred ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
|+++++..+.. .+...+....|+|+|+.|+.++.+ + .|+++|+.++...+ +..+.....+..|+|||++|+..+.
T Consensus 273 d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEc
Confidence 99887665443 344567889999999999877754 3 45566777665543 3444455678899999999987654
Q ss_pred C---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc---EEEEeCCCCccccccccccCCcccccccc
Q 005913 568 D---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 568 d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~---I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
+ ..|.+||+.++... .+... ....+..|+|||++|+.++.++. +.+|++.... ...
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~----------------~~~ 412 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF----------------KAR 412 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC----------------eEE
Confidence 3 45889999887643 33321 22356789999999999998865 6677765432 234
Q ss_pred cCCCCCCeEEEEEecC
Q 005913 642 LPTKSTPVYSLQFSRR 657 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~ 657 (670)
++.+...+...+|+|-
T Consensus 413 l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 413 LPATDGQVKFPAWSPY 428 (429)
T ss_pred CccCCCCcCCcccCCC
Confidence 4456667888888873
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8.8e-15 Score=161.14 Aligned_cols=250 Identities=17% Similarity=0.247 Sum_probs=178.4
Q ss_pred CCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCC--ccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 352 NGLNCASIS--QDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 352 ~~V~~l~fs--~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..|+.+.+- .|..++.+|+.||.||||+--... .........+ ......+-.+.=.-+
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~------------------Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS------------------LSDQLPGARGTGLVV 1171 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc------------------ccccCccCCCCCeee
Confidence 458888875 367889999999999999843211 0000000000 000011111111346
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc---eeEEec
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA 502 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~---~~~~~~ 502 (670)
.|.....+|++++.-..|+|||......+..+.. ....|+++.-+- .|+.+++|..||.|++||.+... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 7887777888777788999999997776665543 344566665443 57999999999999999987543 466777
Q ss_pred ccCCC--eeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEE--EEecCC--C-CeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 503 ~~~~~--v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~--~-~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
.|... |..+.+.++|-- |++|+.+|.|++||++...... ....|. + ..+++..+++...+|+|+. +.|.||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 88877 999999887754 9999999999999999742222 222232 3 5999999999999999998 999999
Q ss_pred eCCCCeeeEEeeC-------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 575 DLASGRCVTPLMG-------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 575 Dl~~~~~~~~~~~-------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
++. |+.+..++. ..+.+.+++|+|..-++|+|+.|.+|.||.....
T Consensus 1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 975 444433332 2367899999999999999999999999998764
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.4e-14 Score=152.88 Aligned_cols=276 Identities=18% Similarity=0.267 Sum_probs=207.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC-
Q 005913 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD- 434 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~- 434 (670)
...||+|+++++.. .+..|.||...+ +...+.+.+|..+++++.+.|...
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~~ 71 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSEN 71 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCcc
Confidence 45689999998877 567899999876 335557888999999999988654
Q ss_pred --EEEEEeCCCeEEEEeCCCCceeEEe-----------------------------------------------------
Q 005913 435 --FILSSSADTTIRLWSTKLNANLVCY----------------------------------------------------- 459 (670)
Q Consensus 435 --~L~s~s~Dg~I~lwd~~~~~~~~~~----------------------------------------------------- 459 (670)
++.+++.||+|++||...+..+.++
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 6779999999999986432211110
Q ss_pred --------------------------------------------------eCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913 460 --------------------------------------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (670)
Q Consensus 460 --------------------------------------------------~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l 489 (670)
..|...+++.+++|+++++|+|..||.|.+
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 013345678999999999999999999999
Q ss_pred EECCC----CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 490 WSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 490 wd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
|.--. ....+.+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ ...+..-.++|..+.+|||+.+.+..
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence 96322 22345667788999999999999999999999999999999998 33344456889999999999999999
Q ss_pred ECCCeEEEEeCCCCeeeEEeeC-----------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCc
Q 005913 566 DEDGTIMMWDLASGRCVTPLMG-----------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 634 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~~~~-----------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 634 (670)
..|..|.+..+.+......+.+ ..+-.+.++++|..+.++-.+..|.|.+||+-+...+.+........
T Consensus 311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 9999999998765544333322 13446778899987889999999999999998877665443210000
Q ss_pred ccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
..-.....-+|++++++..|.+++++-
T Consensus 391 ----~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 391 ----SDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ----cCCcceeEEeeeeehhhccceEEEEee
Confidence 000002334678888888899998864
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.8e-14 Score=138.71 Aligned_cols=238 Identities=19% Similarity=0.292 Sum_probs=169.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.+.-++|++.-..+|++..|-.|+||+-.. .. ....-......|+|++|-|.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~---------------------------pt~Lks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TC---------------------------PTKLKSVSQRNVTCLAWRPL 151 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CC---------------------------CceecchhhcceeEEEeccC
Confidence 477889999877889999999999999653 11 01111123467999999996
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCc--------------eeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCc
Q 005913 433 G-DFILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ 496 (670)
Q Consensus 433 ~-~~L~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~ 496 (670)
+ ..|+.|+..| |.+|...... .+....+| .+|++++|.+||..+++++ .|..|.|||.+++.
T Consensus 152 saselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 5 4677887765 9999865221 12334455 6899999999999999998 45789999999988
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
.+.......+.+.-+.|+|++.+|++++-|+..++|... +..+.+-.. ..+.|...+|+|+|++|+.+.. |.-++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 877765566889999999999999999999999999554 444444333 3458999999999997765442 3334444
Q ss_pred CCCC------------e---eeEEe------eC---CCcceEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCc
Q 005913 576 LASG------------R---CVTPL------MG---HTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTST 622 (670)
Q Consensus 576 l~~~------------~---~~~~~------~~---h~~~V~sl~~s~~g~~l~sgs~Dg--------~I~iwd~~~~~ 622 (670)
+... + .+..+ .+ ..+.+.+++|.|.|.+||+.-..+ .|.+||.....
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 3210 0 11111 11 246788999999999999876443 36667765543
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.8e-15 Score=154.62 Aligned_cols=214 Identities=22% Similarity=0.348 Sum_probs=166.2
Q ss_pred eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw 490 (670)
-..+.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-| +...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3457899999999999999999999999999999999877776655 57999999999999 56789999999999999
Q ss_pred ECCC----------CceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEE----------EEEecCCCC
Q 005913 491 SMDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECV----------RIFIGHRSM 549 (670)
Q Consensus 491 d~~~----------~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~----------~~~~~h~~~ 549 (670)
|++. ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++..... ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 33556677899999999999998 89999999999999999863211 111122235
Q ss_pred eEEEEEcCC-CCEEEEEECCCeEEEEeCCC--------Ce----------eeEEee-CCC-----------cceEEEEEc
Q 005913 550 ILSLAMSPD-GRYMASGDEDGTIMMWDLAS--------GR----------CVTPLM-GHT-----------SCVWTLAYS 598 (670)
Q Consensus 550 I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~--------~~----------~~~~~~-~h~-----------~~V~sl~~s 598 (670)
..|+.++|. ..+|++|+.|-..++||.+. +. ++..+. +|. ..++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678999995 56899999999999999431 11 122221 221 125668899
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 599 CEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 599 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
|+|.-|...-....|+++|+..++.....
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 99986666655668999999887665433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.9e-14 Score=139.21 Aligned_cols=241 Identities=16% Similarity=0.196 Sum_probs=169.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC----
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI---- 495 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~---- 495 (670)
..+..++|++.-..++++..|-+|++|+-.. ++...++. ....|++++|-|. +.-|++|+. +-|.+|..+..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4577899998777788999999999999876 44444443 4567999999995 456777776 56999986531
Q ss_pred ce----------eEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 496 QP----------LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 496 ~~----------~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
.+ +..-.+| ..|++++|.+||..+++++ .|..|+|||..++..+....-..+.++-+.|||||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1222345 6899999999999999977 4678999999999888766455577999999999999999
Q ss_pred EECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccc---
Q 005913 565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK--- 640 (670)
Q Consensus 565 g~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--- 640 (670)
++-|+..++|... +.....-.. ..+.|...+|+|+|++|.-+.. |.-++|.+.............+.....++.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999544 444433333 3458999999999987665543 334566665443322221111111111111
Q ss_pred --ccCCC----CCCeEEEEEecCCcEEEEeeCC
Q 005913 641 --TLPTK----STPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 641 --~~~~~----~~~V~~l~fs~~~~~La~gs~d 667 (670)
+..+. .+++.+++|.|.|.+||+.-..
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 11122 5689999999999999986543
No 214
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=2.6e-14 Score=140.22 Aligned_cols=293 Identities=21% Similarity=0.326 Sum_probs=197.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC---------
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH--------- 420 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------- 420 (670)
..+-|.|+.|..+|.+||+|..+|.|.+|.-..... +.......++.|
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkS 80 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKS 80 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhh
Confidence 345699999999999999999999999997553211 001112222222
Q ss_pred ---ccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-----------------------------------eEEe-
Q 005913 421 ---SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY- 459 (670)
Q Consensus 421 ---~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~- 459 (670)
...|..+.|.++++ .++..+.|.+|++|.+..... .+.+
T Consensus 81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a 160 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA 160 (433)
T ss_pred hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence 34688899998775 566777899999998652210 0111
Q ss_pred eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE---eccc-----CCCeeEEEEcCC-CCEEEEEEcCCcEE
Q 005913 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI---MAGH-----LSDVDCVRWHIN-CNYIATGSSDKTVR 530 (670)
Q Consensus 460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~---~~~~-----~~~v~~v~~~p~-~~~l~tgs~dg~I~ 530 (670)
..|...|.++.++.|+..++++ .|=.|.+|.++-...... ++.+ ...|++..|||. ++.++-.++.|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 2588999999999999988887 457899999864322211 2222 245788999985 67888899999999
Q ss_pred EEECCCCcEE----EEE------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCC----
Q 005913 531 LWDVSSGECV----RIF------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHT---- 589 (670)
Q Consensus 531 iwd~~~~~~~----~~~------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~---- 589 (670)
+.|++..... ..| ..--..|..+.|+++|+++++-+. -+|++||+. ..+++.++.-|.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 9999853221 111 122246889999999999998754 689999994 556777776553
Q ss_pred --------cce---EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc---c----CCccccccccc---------
Q 005913 590 --------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK---S----GTNRLRSLKTL--------- 642 (670)
Q Consensus 590 --------~~V---~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~----~~~~~~~~~~~--------- 642 (670)
..| ..++|+.++.+++||+..+.++++++..+......... . ....+..+..-
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~ 398 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEIS 398 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccc
Confidence 223 35899999999999999999999997665432211110 0 00001111100
Q ss_pred ---CCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 643 ---PTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 643 ---~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
-.....|...+|+|....+|++...
T Consensus 399 vd~ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 399 VDALDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred cchhhhhhHHHhhccCCccceeeeeecC
Confidence 0123347788999999998888754
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9e-14 Score=151.60 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=152.9
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 347 FINTHNGLNCASISQDGSLVAGGF---SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~---~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
+..+...+.+.+|||||+.||..+ .+..|.+|++.+... ..+..+ .+.
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~~~---~~~ 244 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVASF---PRH 244 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEccCC---CCC
Confidence 344566799999999999998654 245688888764211 111112 233
Q ss_pred EEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCce
Q 005913 424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQP 497 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~~ 497 (670)
+...+|+|||+.|+.. +.+| .|++||+.++..... ..+...+....|+|+|+.|+.++.+ + .|+++++.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4467999999988754 4454 588999987765443 3344567889999999998877754 4 455557766654
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe---E
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I 571 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~---I 571 (670)
. .+..+.....+..|+|+|++|+..+.+ ..|.+||+.++.... +... .......|+|||++|+.++.++. +
T Consensus 324 ~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3 333344456678999999999886644 358899998887543 3322 23456789999999999887764 6
Q ss_pred EEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 572 MMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
.++++ +|.....+.+|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77787 5666677778888899999987
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-13 Score=150.74 Aligned_cols=200 Identities=18% Similarity=0.178 Sum_probs=142.5
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCC--cEEE
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARI 489 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg--~v~l 489 (670)
.+..|...+.+.+|+|+|+.|+.++. +..|++||+.++.... +..+.....+..|+|+|+.++ +.+.+| .|++
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 34456778999999999999988764 3469999998776543 333344456789999999775 445555 5999
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
||+.+++. ..+..+.......+|+|+|++|+.++. +| .|+++|+.+++..+.. .+.......+|||+|++|+..+
T Consensus 277 ~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEE
Confidence 99988764 344555555677899999999888764 34 4777788777654433 3334456789999999998765
Q ss_pred CCC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 005913 567 EDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT 620 (670)
Q Consensus 567 ~dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~ 620 (670)
.++ .|.+||+.++... .+. +........|+|||++|+..+.+ +.|.++++..
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 443 6999999887654 333 22345577999999988777653 3577777754
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.9e-15 Score=151.31 Aligned_cols=281 Identities=21% Similarity=0.299 Sum_probs=213.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+..|.+.|+.+.|+..|..|++|+.|-.|.+||+.... .......||...|.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---------------------------~~l~f~SGH~~Nvf 189 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---------------------------PKLSFESGHCNNVF 189 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccC---------------------------cccccccccccchh
Confidence 566788999999999999999999999999999987522 23344568888898
Q ss_pred EEEEcCCC--CEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeE
Q 005913 426 SASFSPLG--DFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 426 ~l~~sp~~--~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
...|-|.. .-+++++.||.|++=.+..... ......|.++|..++.-|+. .-|.+++.|+.+.-+|++...+..
T Consensus 190 QaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 190 QAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred hhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 88898853 5799999999999877653332 34455699999999999965 459999999999999998876655
Q ss_pred Eec---ccCC---CeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc------EEEEEecC------CCCeEEEEEcCCCC
Q 005913 500 IMA---GHLS---DVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGR 560 (670)
Q Consensus 500 ~~~---~~~~---~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h------~~~I~~l~~sp~g~ 560 (670)
.+. .+.. ....++.+|.. +.+++|+.|..+++||.+.-. .+..|..| ...|+|++|+.++.
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 443 2223 45678888854 589999999999999987432 12333322 24699999999888
Q ss_pred EEEEEECCCeEEEEeCCC--C----------eeeEE-eeCCCc--ceEEEEE-cCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 561 YMASGDEDGTIMMWDLAS--G----------RCVTP-LMGHTS--CVWTLAY-SCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~--~----------~~~~~-~~~h~~--~V~sl~~-s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
-|.++-.|-.|+++.-.. | ..+.. +++|.. .|..+-| .|...++++|+.=|.|.||+-.+++.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei- 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI- 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH-
Confidence 888888888999995432 2 22333 678863 5777765 78889999999999999999887653
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+..+.+...-|.||.=+|--.+||+++.|.
T Consensus 429 --------------i~~MegDr~VVNCLEpHP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 429 --------------IRFMEGDRHVVNCLEPHPHLPVLASSGIDH 458 (559)
T ss_pred --------------HHHhhcccceEeccCCCCCCchhhccCCcc
Confidence 444555555788888899888999887663
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.6e-13 Score=147.57 Aligned_cols=202 Identities=13% Similarity=0.033 Sum_probs=145.8
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCc--EE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR 488 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~--v~ 488 (670)
+.+..|...+.+.+|+|||+.|+..+. +..|++||+.++... .+..+...+....|+|+|..++ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445577889999999999999887763 468999999877653 3445566778899999998875 4555554 77
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
+||+.++.. ..+..+........|+|+|+.|+..+. +| .|++||+.++...+ +..+.+.+....|+|+|+.|+..
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence 778887755 445556666778999999999988764 33 68888987766544 33345567778999999999876
Q ss_pred ECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC------CcEEEEeCCCC
Q 005913 566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD------CTVKLWDVTTS 621 (670)
Q Consensus 566 ~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D------g~I~iwd~~~~ 621 (670)
+.+ ..|.+||+..+.. ..+. ....+.+..|+|||+.|+..+.+ ..+.++|+...
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 643 3688999865543 3332 22346788999999988776543 24667776553
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.9e-15 Score=152.90 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=164.2
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|.+-|+|++|+.||.+||+|+.|-.+.|||.... +.....-.||.+.|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIF 97 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIF 97 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeeccccccee
Confidence 36789999999999999999999999999999997531 234455679999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEEC
Q 005913 426 SASFSPL--GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM 492 (670)
Q Consensus 426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~ 492 (670)
++.|-|. ++.+++|+.|..|+++|+.. ......+..|...|..++..|++ +.|.+++.||+++-+|+
T Consensus 98 svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence 9999984 46889999999999999984 23456677899999999999988 88999999999999999
Q ss_pred CCCcee----------EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCC--------C----------cEEEEE
Q 005913 493 DRIQPL----------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS--------G----------ECVRIF 543 (670)
Q Consensus 493 ~~~~~~----------~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~--------~----------~~~~~~ 543 (670)
+..... ..+....-...|+..+|. ..+|++|++|-..++||.+. + .|++-|
T Consensus 178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf 257 (758)
T KOG1310|consen 178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF 257 (758)
T ss_pred cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence 863211 111122345678999985 46889999999999999531 1 123333
Q ss_pred e-cCC-----------CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 544 I-GHR-----------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 544 ~-~h~-----------~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
. +|- ..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2 121 12567889999998887766778999999887765443
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2e-13 Score=149.47 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=153.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
..+..+...+.+.+|||||+.|+..+.+ ..|.+|++.+... ..+..+.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~ 247 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFR 247 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCC
Confidence 3455667789999999999999987633 4689999864211 1122233
Q ss_pred cCEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCc--EEEEECCCC
Q 005913 422 GPVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRI 495 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~--v~lwd~~~~ 495 (670)
+...+.+|+|+|+.|+ +.+.+| .|++||+.++.. ..+..+.......+|+|+|++++.++. +|. |+++++.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 4455789999999775 445555 599999987764 344455555667899999999887764 444 666777776
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---G 569 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g 569 (670)
+..+.. .+......++|+|+|++|+..+.++ .|.+||+.+++... +. +........|+|||++|+..+.+ +
T Consensus 327 ~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 327 SAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRG 403 (433)
T ss_pred CeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCce
Confidence 544433 2334455789999999998876443 69999998887653 33 32345567999999988876653 4
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
.|.++|+. +.....+..+.+.+...+|+|
T Consensus 404 ~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 68888884 445556665667777888886
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=148.64 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=132.5
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCcEEEEE-
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS- 491 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd- 491 (670)
+..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +......+....|+|+|+.++ +.+.+|...+|.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44567789999999999999877643 469999999876543 333344566899999999886 456778766665
Q ss_pred -CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEE--ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 492 -MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLW--DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 492 -~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iw--d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
+..+. ...+..+........|+|+|+.|+..+. +|...+| ++.++...+.. .+.......+|||+|++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEc
Confidence 44443 4455555555677899999998887654 4555555 54555443332 23334556889999999988765
Q ss_pred CC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913 568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 568 dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
++ .|.+||+.++... .+..+ .......|+|||+.|+.++.++
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 54 6999999887644 33322 2346789999999888877554
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1e-15 Score=164.66 Aligned_cols=233 Identities=21% Similarity=0.420 Sum_probs=185.1
Q ss_pred cceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 412 ~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
+.++.+.||...|+|+.|...|.++++|+.|..|+||++.+..++....||.+.|++++.+.++..+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-----EEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...+. .+ ....-+.++.|-.++.-++||+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc-ccccceeeeecccccccccccc
Confidence 99999999999999999999999954 77889999999988111111 11 1224577788888899999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
.|+.-..|.+..-. .+...+.-+.++.+ ..+.+++-.+..+++|++..+. ++.....|
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------------l~H~l~gh 394 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------------LLHNLMGH 394 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch---------------hhhhhccc
Confidence 99998888764321 12111111222212 2567778888899999998874 34455678
Q ss_pred CCCeEEEEEecCCcEEE-EeeCCCCC
Q 005913 646 STPVYSLQFSRRNLLFA-AGALSKTS 670 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La-~gs~dgs~ 670 (670)
..+++.+.|+|-+..++ +++.||++
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCce
Confidence 88899999999876554 56677753
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=148.14 Aligned_cols=173 Identities=22% Similarity=0.398 Sum_probs=134.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC-EEEEE
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSS 439 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~ 439 (670)
+++--|.+|...|.|.+.+........ ++. .. ..-....|+|+.|-|.++ .++++
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sk----------------lfn---e~-----r~i~ktsvT~ikWvpg~~~~Fl~a 238 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSK----------------LFN---EE-----RLINKSSVTCIKWVPGSDSLFLVA 238 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHH----------------hhh---hc-----ccccccceEEEEEEeCCCceEEEE
Confidence 567778999999999988865310000 000 00 001237899999999665 56667
Q ss_pred eCCCeEEEEeCCCC--------------c--------------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 440 SADTTIRLWSTKLN--------------A--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 440 s~Dg~I~lwd~~~~--------------~--------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
-.+|.+++||.... . ++..+.-....|..++|+|||++||+.+.||.+||+|
T Consensus 239 ~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~ 318 (636)
T KOG2394|consen 239 HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD 318 (636)
T ss_pred EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence 78999999975311 0 1111111234688899999999999999999999999
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 557 (670)
.++.+.+..++...+...|++|+|||+||++|+.|.-|.||.+..++.+..-.+|...|..++|.|
T Consensus 319 fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 319 FDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999888888888889999999999999999999999999999999999999999999999999983
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.7e-13 Score=133.73 Aligned_cols=261 Identities=16% Similarity=0.234 Sum_probs=178.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (670)
-++|||+|+++|+.+.- .+.|-|..+.... ..+ .--..|..+.|..+..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------qlf-~cldki~yieW~ads~~ 62 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------QLF-LCLDKIVYIEWKADSCH 62 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------HHH-HHHHHhhheeeecccee
Confidence 46899999999999544 7777776542111 111 11356777899988887
Q ss_pred EE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEE
Q 005913 436 IL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (670)
Q Consensus 436 L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~ 513 (670)
++ ....++.|.+|++...+-...+.....++.+++|||+|+ .+.+...|-.|.+|++.+.+... +......+..++|
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF 141 (447)
T ss_pred eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE
Confidence 65 556788999999999888888888888999999999995 45666788999999998865543 3333455688999
Q ss_pred cCCCCEEEEEEcC------------------------------------CcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913 514 HINCNYIATGSSD------------------------------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (670)
Q Consensus 514 ~p~~~~l~tgs~d------------------------------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 557 (670)
+|+|++.+..+.- ..+.+||---.-.+..+ ...-.+..++|+|
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP 220 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSP 220 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEecc
Confidence 9999988776532 12333432111111111 1224588899999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeeeEE-----------------------------------------------------
Q 005913 558 DGRYMASGDEDGTIMMWDLASGRCVTP----------------------------------------------------- 584 (670)
Q Consensus 558 ~g~~l~sg~~dg~I~iwDl~~~~~~~~----------------------------------------------------- 584 (670)
.+++|+.|+.|+.+++.+--+.+....
T Consensus 221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 999999999999998865332211110
Q ss_pred -------ee------CCCcceEEEEEcCCCCEEEEEECC--CcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913 585 -------LM------GHTSCVWTLAYSCEGSLLASGSAD--CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649 (670)
Q Consensus 585 -------~~------~h~~~V~sl~~s~~g~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 649 (670)
++ ...-.+.-++||+|..++++-... +.+-+||+...+ +...-....||
T Consensus 301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----------------l~avLiQk~pi 364 (447)
T KOG4497|consen 301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----------------LHAVLIQKHPI 364 (447)
T ss_pred cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----------------hhhhhhhccce
Confidence 01 112236678999999999887644 679999998743 22333455688
Q ss_pred EEEEEecCCcEEEEe
Q 005913 650 YSLQFSRRNLLFAAG 664 (670)
Q Consensus 650 ~~l~fs~~~~~La~g 664 (670)
..+.|.|....|+..
T Consensus 365 raf~WdP~~prL~vc 379 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVC 379 (447)
T ss_pred eEEEeCCCCceEEEE
Confidence 888888876655543
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.9e-13 Score=149.19 Aligned_cols=220 Identities=17% Similarity=0.153 Sum_probs=149.9
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
+..+.+.+.+.+|||||+.||..+.+ ..|.+||+.+.. ...+....+.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------------------------~~~l~~~~g~ 241 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------------------------RRVVANFKGS 241 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------------------EEEeecCCCC
Confidence 44566789999999999999877643 358999987521 1122223345
Q ss_pred EEEEEEcCCCCEEE-EEeCCCeEEEEe--CCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEEC--CCCce
Q 005913 424 VYSASFSPLGDFIL-SSSADTTIRLWS--TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQP 497 (670)
Q Consensus 424 V~~l~~sp~~~~L~-s~s~Dg~I~lwd--~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~--~~~~~ 497 (670)
+.+.+|+|||+.|+ +.+.+|...||. +.++. ...+..+........|+|||+.++..+. +|...+|.+ .++..
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 66889999999876 567788766665 44333 4445555555677899999998887664 456666654 44443
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eE
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI 571 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~I 571 (670)
.+.. .+.......+|+|+|++|+..+.++ .|.+||+.+++..... .. .......|+|||+.|+.++.++ .+
T Consensus 321 ~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 321 QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEE
Confidence 3322 2223345678999999999877654 6999999888765433 22 3346789999999988876544 46
Q ss_pred EEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (670)
Q Consensus 572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~ 600 (670)
.+.++ .+.....+..+.+.+...+|+|-
T Consensus 398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 66676 46656666667777888888873
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=5.1e-13 Score=130.45 Aligned_cols=269 Identities=17% Similarity=0.262 Sum_probs=186.9
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
+.|.-+.|+-|.-++. +...++.|.+|++... .-........+++.+++||
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----------------------------ew~ckIdeg~agls~~~WS 100 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----------------------------EWYCKIDEGQAGLSSISWS 100 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc----------------------------eeEEEeccCCCcceeeeEC
Confidence 4577788888876655 4577899999998751 2334455567889999999
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--------------------------
Q 005913 431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-------------------------- 483 (670)
Q Consensus 431 p~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-------------------------- 483 (670)
|+|+.|+ +...|-.|.+|++.+...... +-....+..++|+|+|++.+.++.
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~ 179 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI 179 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence 9997655 666788999999987655432 222334678889999988777653
Q ss_pred ----------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-----------
Q 005913 484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----------- 542 (670)
Q Consensus 484 ----------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~----------- 542 (670)
+..+.+||.--...+..+ .-.-.+..++|+|.+++|++|+.|+.+|+.+--+.+....
T Consensus 180 DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 180 DLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT 258 (447)
T ss_pred cccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence 123444442111111111 1224688999999999999999999999865422211100
Q ss_pred -------------------------------------------------Ee------cCCCCeEEEEEcCCCCEEEEEEC
Q 005913 543 -------------------------------------------------FI------GHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 543 -------------------------------------------------~~------~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
++ .....+.-++||+|..+++|-.+
T Consensus 259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 00 11223567899999999998654
Q ss_pred --CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 568 --dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
-+.+.+||++..+....+ ....+|....|+|....|+.+.....+++|....... -..+.+
T Consensus 339 ~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~----------------V~vP~~ 401 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV----------------VGVPKK 401 (447)
T ss_pred CCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE----------------EecCCC
Confidence 367999999876644333 3556899999999998898888888899998766322 233455
Q ss_pred CCCeEEEEEecCCcEEEEeeCC
Q 005913 646 STPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~gs~d 667 (670)
.-.|.++.|.-.|..++..+.|
T Consensus 402 GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 402 GFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred CceeeeEEecCCCcEEEEEcCC
Confidence 5689999999999998887776
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2e-13 Score=152.98 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=164.1
Q ss_pred CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCCCEEEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFAS 480 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g~~l~s 480 (670)
.++..+..+..|+..|..++.++.. .++++||.||+|++|+...- +...++......+.++.+.+.++.+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3456677788899999999998766 89999999999999997632 233455556778999999999999999
Q ss_pred EECCCcEEEEECCCCc-------eeEEecccC-C-CeeEEEEcC-CC-CEEEEEEcCCcEEEEECCCCcEEEEEe--cCC
Q 005913 481 SSHDRTARIWSMDRIQ-------PLRIMAGHL-S-DVDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHR 547 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~-------~~~~~~~~~-~-~v~~v~~~p-~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~ 547 (670)
++.||.|++.+++... +.+....+. + .|.+-+|.. .+ ..++.++.-+.|..||++.......++ ...
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999998621 222222222 2 233333332 22 378888889999999998776554433 345
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCC---CCEEEEEE--CCCcEEEEeCCCC
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE---GSLLASGS--ADCTVKLWDVTTS 621 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~---g~~l~sgs--~Dg~I~iwd~~~~ 621 (670)
|.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..+..+|- ....++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 789999999999999999999999999999998887765 45577888777662 34555554 4678999999998
Q ss_pred cccccc
Q 005913 622 TKVLKT 627 (670)
Q Consensus 622 ~~~~~~ 627 (670)
......
T Consensus 1276 ~~~~vl 1281 (1431)
T KOG1240|consen 1276 LRQTVL 1281 (1431)
T ss_pred cceEEE
Confidence 654443
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.1e-13 Score=135.61 Aligned_cols=246 Identities=17% Similarity=0.229 Sum_probs=183.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..|...|.|++|....++|.+|..+|+|...|+.+.... .+.......+.|+.+
T Consensus 102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~m 155 (609)
T KOG4227|consen 102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYHM 155 (609)
T ss_pred CccccceEEEEEccCCeeEecCCCcceeEeeecccceee--------------------------eeecccCcccceeec
Confidence 445578999999999999999999999999998752111 011111234699999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCce-eEEe-
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQP-LRIM- 501 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~-~~~~- 501 (670)
..+|..+.|++.+.++.|.+||.+.... .............+.|+| ....|++++..+-+-+||.+..+. +...
T Consensus 156 ~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~ 235 (609)
T KOG4227|consen 156 DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS 235 (609)
T ss_pred ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh
Confidence 9999999999999999999999986542 233333455678899999 456788888889999999976432 2111
Q ss_pred --cccC---CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-------CeEEEEEcCCCCEEEEEECCC
Q 005913 502 --AGHL---SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 502 --~~~~---~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~I~~l~~sp~g~~l~sg~~dg 569 (670)
.+-. ..-..+.|+|+|+.+++--....-.+||+.+..+...-..|.. .+.+++|.-|- .+++|+.+-
T Consensus 236 ~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~ 314 (609)
T KOG4227|consen 236 MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW 314 (609)
T ss_pred ccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCccc
Confidence 1111 2235788999999999887777778899887665433333322 35667777554 499999999
Q ss_pred eEEEEeCCC----------C-------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 570 TIMMWDLAS----------G-------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 570 ~I~iwDl~~----------~-------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.|++|.+.. | +.+..+++|.+-+..+.|+|...+|++.+..+.++||.-..
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 999998742 1 12345789999999999999999999999999999997543
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.6e-13 Score=135.62 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=165.1
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecC-CCEEEEEECC--CcEE
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHD--RTAR 488 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d--g~v~ 488 (670)
......++|.++... +..|++|-.+|.+.+|....+. .+..+..+ .++..+.-++. ...+++||.. ..+.
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 344556778777776 5678888999999999988442 23334433 34666666664 4456668888 8999
Q ss_pred EEECCCCceeEEecccC---------CCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEc
Q 005913 489 IWSMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMS 556 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~---------~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~s 556 (670)
+||+++.+++..-+.-. -.++.+.|-+. ...|++++.-+.+|+||.+.+ +++..|.-...+|+++...
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 99999886665443221 13567888877 889999999999999999965 5677887778899999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeeeEE-eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 557 PDGRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~-~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
|.|+++++|..-|.+..||++.++.+.. +.+..+.|+++..+|.+++|++||-|..|||+|+.+...+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999999999999999999998877 7888999999999999999999999999999999985543
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.8e-13 Score=142.31 Aligned_cols=269 Identities=13% Similarity=0.159 Sum_probs=190.7
Q ss_pred ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCc----cceeeeecC--
Q 005913 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK----RSYTLYQGH-- 420 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h-- 420 (670)
+.+...-+.+..||||+|+ |+|.....|++||+............... ..-.+++.+-.. ..-+...-|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~----V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV----VDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccc----eeEEEeccchhhheEeecCceeeehhh
Confidence 4455667889999999985 58888999999999875432211100000 000000000000 000001111
Q ss_pred ---------ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 421 ---------SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 421 ---------~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
...-..++++.-..-|++++....|+-++++.|.-+..+....+.++++..++....|++|+.+|.|-+||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 11223455554344455555556799999999999999998889999999999999999999999999999
Q ss_pred CCCCceeEEec------ccCC-----CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCC-
Q 005913 492 MDRIQPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD- 558 (670)
Q Consensus 492 ~~~~~~~~~~~------~~~~-----~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~- 558 (670)
.+....+..+. .|.+ .|+++.|+-+|-.+++|+++|.|.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 98776655543 2222 39999999999999999999999999999998876542 23357999999875
Q ss_pred -CCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 559 -GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 559 -g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+..+++. +...++|||-.+|+....+.. +..+..+|+-|++.+++++-.++.+..|=+..-.
T Consensus 284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred CCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 4455555 457899999999999888764 3458999999999999999999988888776644
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=9.3e-13 Score=144.32 Aligned_cols=219 Identities=14% Similarity=0.106 Sum_probs=152.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+. ....+..+.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----------------------------~~~~l~~~~g 246 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----------------------------QRELVGNFPG 246 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----------------------------cEEEeecCCC
Confidence 34566778999999999999987653 467999998642 1123344566
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 005913 423 PVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~ 496 (670)
.+.+.+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+|+|++++.++. +| .|++||+..+.
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 778889999999775 5555554 77789887654 445556666778999999999887764 33 68888987765
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED----- 568 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d----- 568 (670)
..+. ..+...+....|+|+|++|+..+.+ ..|.+||+.++.. +.+. ....+..+.|+|||+.|+..+.+
T Consensus 326 ~~~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 326 PRRI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eEEe-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 5443 3344566778999999999887653 3688899865543 3343 23356788999999988775543
Q ss_pred -CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 569 -g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
..|.++|+..+.. ..+. ..+.+...+|+|
T Consensus 403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 3688888866544 3443 244566777776
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=7.5e-13 Score=127.86 Aligned_cols=155 Identities=19% Similarity=0.399 Sum_probs=115.0
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCC-ceeEEeeC-CCccEeEEEEecCCCEEEEEE--CCCcEEEE
Q 005913 425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASSS--HDRTARIW 490 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s--~dg~v~lw 490 (670)
..+.|+|+|++|+.-.. -|...+|.++.. .....+.- ..++|.+++|+|+|..|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999998764432 134555555322 23333332 345799999999999986653 56799999
Q ss_pred ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
|++ ++++..+. ...++.+.|+|+|++|++++.+ |.|.+||+++.+.+..+. | ..++.++|+|+|++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 56666654 4678899999999999998744 679999999888887664 3 34789999999999999874
Q ss_pred ------CCeEEEEeCCCCeeeEEe
Q 005913 568 ------DGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 568 ------dg~I~iwDl~~~~~~~~~ 585 (670)
|+.++||+. .|+.+...
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEec
Confidence 788999997 46666543
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=7.6e-13 Score=127.83 Aligned_cols=149 Identities=22% Similarity=0.413 Sum_probs=112.3
Q ss_pred eEEEEecCCCEEEEEEC----------CCcEEEEECC-CCceeEEecc-cCCCeeEEEEcCCCCEEEEE--EcCCcEEEE
Q 005913 467 WDVQFNPQGHYFASSSH----------DRTARIWSMD-RIQPLRIMAG-HLSDVDCVRWHINCNYIATG--SSDKTVRLW 532 (670)
Q Consensus 467 ~~l~~sp~g~~l~s~s~----------dg~v~lwd~~-~~~~~~~~~~-~~~~v~~v~~~p~~~~l~tg--s~dg~I~iw 532 (670)
..+.|+|.|.+|++-.. -+...+|.++ ...++..+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776543 1234455442 2234444432 34579999999999987654 467899999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~---dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~ 609 (670)
|++ ++.+..+ +...+..+.|||+|++|++|+. .|.|.+||.++.+.+.... | ..++.++|+|+|++|++++.
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 6666655 3567889999999999999874 4679999999988887764 3 34789999999999999874
Q ss_pred ------CCcEEEEeCCC
Q 005913 610 ------DCTVKLWDVTT 620 (670)
Q Consensus 610 ------Dg~I~iwd~~~ 620 (670)
|+.++||++..
T Consensus 164 ~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccceeccccEEEEEecC
Confidence 78899999864
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=3.7e-12 Score=124.39 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=159.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECC------CcEEEEECCCC
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD------RTARIWSMDRI 495 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~d------g~v~lwd~~~~ 495 (670)
...+++|+.|...+++|..+| .+||+++-.+.......+...+.-+..--..++++.. |.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 344599999999999998877 8999987543322222222222112221123454443 332 47999996666
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCC--eEEEEEcCCCCEEEE-EECCCeE
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSM--ILSLAMSPDGRYMAS-GDEDGTI 571 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~--I~~l~~sp~g~~l~s-g~~dg~I 571 (670)
.++..+. ..++|.+|.+.++ .|++. ..+.|++|... +-+.++.+.....| +.+++-+.+-.+||. |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7776665 5688999999765 45544 46789999987 55666665433322 333332223345554 4566999
Q ss_pred EEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCCc-EEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 572 MMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 572 ~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
+|-|+...+. ...+.+|.+.|.+++.+.+|.++||+|..|+ |||||..+++.+.+.. -......
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-------------RG~d~A~ 228 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-------------RGVDRAD 228 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-------------cCCchhe
Confidence 9999987665 4678899999999999999999999999998 8999999987654331 1234567
Q ss_pred eEEEEEecCCcEEEEeeCCCC
Q 005913 649 VYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs~dgs 669 (670)
|++++|||+..+||++|+.||
T Consensus 229 iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCe
Confidence 999999999999999999886
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4e-12 Score=127.26 Aligned_cols=221 Identities=13% Similarity=0.202 Sum_probs=165.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|..++.. ...|.+|..+|.+.+|........ ......+..+ .++..+.-++
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~ 158 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD 158 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence 344444443 235777789999999997641110 1122222222 5667777777
Q ss_pred CCCE-EEEEeCC--CeEEEEeCCCCceeEEeeCC-------Ccc--EeEEEEecC--CCEEEEEECCCcEEEEECCCC-c
Q 005913 432 LGDF-ILSSSAD--TTIRLWSTKLNANLVCYKGH-------NYP--VWDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q 496 (670)
Q Consensus 432 ~~~~-L~s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~--V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~-~ 496 (670)
...+ +++|+.. ..+.+||+...+.+..-+.- .-| ++++.|-+. ...|++++.-+.+++||.+.+ +
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 6654 5568888 78999999977544433321 123 446788886 788999999999999999854 5
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
|+..+.-...++.++...|.+++|++|..-|.+..+|+++++.... +.+..+.|++|..+|.+++++++|-|..++|+|
T Consensus 239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 7888887788999999999999999999999999999999998876 888899999999999999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceEEEEEcCC
Q 005913 576 LASGRCVTPLMGHTSCVWTLAYSCE 600 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~s~~ 600 (670)
+.+.+++.... -.+.++++.+.++
T Consensus 319 ~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 319 IKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cccchhhhhhh-hhccccEEEecCC
Confidence 99976664432 2234566666543
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2.7e-11 Score=132.31 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=141.3
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCC--cEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TAR 488 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg--~v~ 488 (670)
+.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.++.... +..+...+.++.|+|+|+.|+.. +.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3344566778899999999999877643 479999998775443 33355566778999999877654 4443 588
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
+|++.++... .+..+........|+|+|+.|+.++.. + .|++||+.+++..+ +..+...+..+.|+|+|++|+.+
T Consensus 262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEE
Confidence 9999876543 344454555678999999998876643 3 68888988776543 44455667888999999999988
Q ss_pred ECCC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---cEEEEeC
Q 005913 566 DEDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDV 618 (670)
Q Consensus 566 ~~dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~I~iwd~ 618 (670)
+.++ .|.+||+.++... .+... .......|+|+|+.|+.++.++ .+.+.+.
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8776 8999999876432 23222 2335568999999888877664 3444443
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.7e-11 Score=130.90 Aligned_cols=200 Identities=17% Similarity=0.132 Sum_probs=137.1
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCC--cEEE
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARI 489 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg--~v~l 489 (670)
.+..+...+.+.+|+|+|+.|+..+.+ ..|.+|++.++..... ....+.+....|+|+|+.++. .+.+| .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344566788999999999998876643 4699999987765432 223334557899999998874 44454 6888
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-C--CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
||+.++... .+..+........|+|+|+.|+..+. + ..|+++|+.+++..+... .........|+|+|++|+..+
T Consensus 272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEE
Confidence 899887644 34445555677899999998877654 3 368888988887554332 223345678999999998776
Q ss_pred CC-C--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-C--cEEEEeCCC
Q 005913 567 ED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-C--TVKLWDVTT 620 (670)
Q Consensus 567 ~d-g--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g--~I~iwd~~~ 620 (670)
.+ + .|.+||+.++... .+. +........|+|+|+.++..+.+ | .|.++++..
T Consensus 350 ~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 43 3 5889999887643 232 22223356899999988877654 3 466666643
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1.2e-10 Score=123.62 Aligned_cols=268 Identities=13% Similarity=0.100 Sum_probs=170.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (670)
Q Consensus 355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (670)
..+.|+|||+++.+++.||.|.++|+.+.+ ........ ....++++|+||+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~G-~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKVG-GNPRGIAVSPDGK 90 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE-S-SEEEEEEE--TTT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEecC-CCcceEEEcCCCC
Confidence 447799999999999999999999998632 23333322 3467899999999
Q ss_pred EEEEEe-CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEECC-CcEEEEECCCCceeEE-eccc
Q 005913 435 FILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRI-MAGH 504 (670)
Q Consensus 435 ~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~d-g~v~lwd~~~~~~~~~-~~~~ 504 (670)
++++++ ..+++.++|..+.+.+..+... ...+..+..+|....++..-.| +.|.+.|....+.+.. ....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 988665 6899999999999988877643 3457788888888867666554 7888888877655432 2223
Q ss_pred CCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEe----cCCCCeEEEEEcCC----------CCEEEEEECCC
Q 005913 505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD----------GRYMASGDEDG 569 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~----~h~~~I~~l~~sp~----------g~~l~sg~~dg 569 (670)
........|+|+++|++++ .....|.++|..+++.+..+. .|..++..+ .+|. +...++.-..+
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCC
Confidence 3456788999999998775 456789999999998876653 233344332 2222 22332333334
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE----ECCCcEEEEeCCCCccccccccccCCcccccccccCC-
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT- 644 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 644 (670)
.+.+||..+++.++++....++ .-+..+|+++++.+. ...++|.|+|..+.+.. .++..
T Consensus 250 ~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~---------------~~i~~~ 313 (369)
T PF02239_consen 250 PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV---------------KTITPG 313 (369)
T ss_dssp TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE---------------E-HHHH
T ss_pred ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee---------------EEEecc
Confidence 5678999999999999877666 677789999999998 44589999999886432 12111
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
....+.++.|+++|..+..+..++
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--
T ss_pred CCCcEeccEECCCCCEEEEEEecC
Confidence 112499999999999887776654
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.8e-13 Score=136.96 Aligned_cols=267 Identities=20% Similarity=0.314 Sum_probs=199.5
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~--d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
++.+|.........-..-+|...|....|-| +.+-+++++.||.|++=.+...+
T Consensus 165 ~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------ 220 (559)
T KOG1334|consen 165 QVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------ 220 (559)
T ss_pred eEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc------------------------
Confidence 4556666555555444556777787777876 35668888899999887765311
Q ss_pred CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEe---eCCCc---cEeEEEEecCCC-EEEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCY---KGHNY---PVWDVQFNPQGH-YFAS 480 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~---~V~~l~~sp~g~-~l~s 480 (670)
.......+..|.++|.-++.-|+.. -|.+++.|+.+.-+|++.......+ ..+.. ....++..|... .|++
T Consensus 221 -~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 221 -YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred -ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 1223455678999999999999876 4889999999999999876543322 22333 467888888554 7999
Q ss_pred EECCCcEEEEECCCCce------eEEec------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--C---------
Q 005913 481 SSHDRTARIWSMDRIQP------LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--G--------- 537 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~~------~~~~~------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~--------- 537 (670)
|+.|..+++||.+.... +..+. ...-.|+|++|+.++.-+++...|-.|+++.-.- |
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence 99999999999875322 22222 2234589999998888888888999999995432 2
Q ss_pred -cEE-EEEecCCCC--eEEEE-EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913 538 -ECV-RIFIGHRSM--ILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (670)
Q Consensus 538 -~~~-~~~~~h~~~--I~~l~-~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~ 612 (670)
..+ +.+++|... |-.+- |-|...|+++|++-|.|.||+-.+++.+.-+.+...-|.||.=+|.-.+||++|-|..
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD 459 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc
Confidence 222 337788653 55555 4678899999999999999999999999988887779999999999999999999999
Q ss_pred EEEEeCCCCc
Q 005913 613 VKLWDVTTST 622 (670)
Q Consensus 613 I~iwd~~~~~ 622 (670)
|+||--....
T Consensus 460 VKIWTP~~~e 469 (559)
T KOG1334|consen 460 VKIWTPLTAE 469 (559)
T ss_pred eeeecCCccc
Confidence 9999875443
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.1e-12 Score=129.90 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=172.5
Q ss_pred ecCccCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeE---------E-------------------eeCC------
Q 005913 418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLV---------C-------------------YKGH------ 462 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~---------~-------------------~~~h------ 462 (670)
-+|....+.|..+|||+|+ ++|..--.|++||+....... . +.-|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 3678888999999999986 467778899999986432110 0 0001
Q ss_pred -----CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913 463 -----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537 (670)
Q Consensus 463 -----~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~ 537 (670)
...-.+++++.-..-+++++....|+-++++.|.-+..+....+.+++|..++-..+|++|+.+|.|..||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 011234444443334556666678999999999999989888899999999999999999999999999999988
Q ss_pred cEEEEEe------cCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCC--CCE
Q 005913 538 ECVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE--GSL 603 (670)
Q Consensus 538 ~~~~~~~------~h~~-----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~--g~~ 603 (670)
..+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+. ++.
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 7666553 2333 39999999999999999999999999999988875432 33468899999775 344
Q ss_pred EEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 604 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 604 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
|+|. ....++|||-.++...... .....+..+++-|++-++.+|-.++
T Consensus 288 v~S~-Dk~~~kiWd~~~Gk~~asi----------------Ept~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 288 VVSM-DKRILKIWDECTGKPMASI----------------EPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred EEec-chHHhhhcccccCCceeec----------------cccCCcCceeeecCCceEEEecCCC
Confidence 5544 3568999998887643221 1233588888888887777776543
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=2.5e-11 Score=132.54 Aligned_cols=218 Identities=17% Similarity=0.117 Sum_probs=148.0
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
.+..+...+.+.+|||||++||.+..+ ..|.+|++.+.. ...+..+.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~ 234 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPG 234 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence 345556678999999999999987654 469999986421 122233455
Q ss_pred CEEEEEEcCCCCEEEE-EeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCc
Q 005913 423 PVYSASFSPLGDFILS-SSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s-~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~ 496 (670)
.+.+++|+|+|+.|+. .+.++ .|++|++.++... .+..+........|+|+|++++.++.. + .|++|++.+++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6677899999997764 44444 5888998876543 333444455677899999988776643 3 58888887766
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---e
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---T 570 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~ 570 (670)
.. .+..+...+..+.|+|+|++++.++.++ .|.+||+.++.... +... .......|+|+|++|+.++.++ .
T Consensus 314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 44 3444556677889999999999988776 79999998865433 3222 2345678999999888876654 4
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAY 597 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~ 597 (670)
+.+.+. .+.....+..+.+.+..++|
T Consensus 391 l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 391 LGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 555554 44445555544555555555
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.2e-11 Score=131.28 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=146.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
.+..+...+.+..|||||+.||..+.+ ..|.+|++.+... ..+....+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g 243 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEG 243 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCC
Confidence 344556778999999999999876543 3588888764211 11112223
Q ss_pred CEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 005913 423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~ 496 (670)
.+...+|+|+|+.|+ +.+.+| .|++||+.++... .+..+........|+|+|..++..+. +| .|+++++.+++
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 445689999999877 444455 5888899876543 34445555677899999998877653 33 57778887776
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~ 570 (670)
..+... .........|+|+|++|+..+.+ + .|.+||+.+++.... .. ........|+|+|+.++..+.+ ..
T Consensus 323 ~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 323 AERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEecCCceE
Confidence 544332 22334457899999999887653 2 588999988875433 22 2233456899999998876643 35
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~ 600 (670)
|.++++. +.....+..+.+.+...+|+|-
T Consensus 400 l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 7777874 4444455555566777788763
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6e-11 Score=130.03 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=132.9
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCCc--EEE
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSA-D--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARI 489 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~-D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg~--v~l 489 (670)
.+..+...+.+..|+|||+.|+..+. + ..|++||+.+++.... ...........|+|+|+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34455678889999999999887654 2 3588899987764332 222233446899999998765 455664 777
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
||+.+++.. .+..+.......+|+|+|++|+..+. ++ .|+++|+.+++..+.. .........+|+|||++|+..+
T Consensus 291 ~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence 888877544 34445556678899999998877654 33 5777888877765432 2223344678999999988765
Q ss_pred C-CC--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-Cc--EEEEeCCC
Q 005913 567 E-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CT--VKLWDVTT 620 (670)
Q Consensus 567 ~-dg--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~--I~iwd~~~ 620 (670)
. ++ .|.++|+.++... .+... .......|+|+|+.|+..+.+ |. +.+++...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4 33 5667888877643 23222 122345899999987766644 33 66666643
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=6.4e-12 Score=139.62 Aligned_cols=197 Identities=20% Similarity=0.337 Sum_probs=160.3
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC----ccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
..|....+.-+...++.++.+..+.+||...+.......+.. .+..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344444455566778888888999999998766555444322 1222344566778999999999999999874333
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
-..+.+|.+.+..+.|+-+|.++++.|.|+++|+|++.+.+... ..-+|.+.|..++|.|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33678999999999999999999999999999999999988776 66689999999999998 9999999999999975
Q ss_pred CCCeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 577 ASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 577 ~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
. +..+..+.+|. ..|+.++..++..+++|++.||.+++|++...
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 4 55566788887 67999999999999999999999999998764
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.1e-10 Score=126.97 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=131.7
Q ss_pred CccCEEEEEEcCCCCE--E-EEEeCC--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-----CCcEEE
Q 005913 420 HSGPVYSASFSPLGDF--I-LSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARI 489 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~--L-~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-----dg~v~l 489 (670)
....+.+-+|||||+. + ++...+ ..|++.++.+++..... ...+......|+|||+.|+..+. +..+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4455667799999975 2 244334 35778888877543332 23334556899999998887653 223444
Q ss_pred EECCC---CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEE--EECCC-CcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRL--WDVSS-GECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 490 wd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~i--wd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
|++.. +.+.+...++.......+|+|||+.|+..+ .+|...+ +++.. +...+.+..+...+....|||||+.|
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 77664 333444433334456789999999888766 4564444 45542 33344555555677889999999998
Q ss_pred EEEECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCc
Q 005913 563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTST 622 (670)
Q Consensus 563 ~sg~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~---Dg~I~iwd~~~~~ 622 (670)
+..+.+ ..|.+||+.+++.. .+......+.+..|+|||+.|+..+. .+.|.+||+..+.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 876543 47999999888754 33333445678999999998875443 3468888887654
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.1e-11 Score=129.00 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=141.3
Q ss_pred cCCCCEEEEEEcCCCCEE---EEEeCCCc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 349 NTHNGLNCASISQDGSLV---AGGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~L---a~g~~dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.....+.+-+|||||+.+ ++...+|. |.+.++.+.. . ..+....+.
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~---~~lt~~~g~ 232 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------G---KKILALQGN 232 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------c---eEeecCCCC
Confidence 344567788999999753 25555555 4455554311 1 112223344
Q ss_pred EEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEE--EC
Q 005913 424 VYSASFSPLGDFILSSSA-DT----TIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW--SM 492 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~-Dg----~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lw--d~ 492 (670)
....+|||||+.|+..+. +| .+.+|++..+ .......++.......+|+|||+.|+..+ .+|...+| ++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 556899999998886553 22 3444776653 22333333333456789999999888766 46655555 44
Q ss_pred CC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 005913 493 DR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE- 567 (670)
Q Consensus 493 ~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~- 567 (670)
+. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+.
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC
Confidence 32 23344455455667889999999999876543 46999999988775443 33445778999999998875433
Q ss_pred --CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC
Q 005913 568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG 601 (670)
Q Consensus 568 --dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g 601 (670)
.+.|++||+..++... +....+.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence 3578999998776443 33344556778888743
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.3e-11 Score=129.44 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=200.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
.+....|++|+....++|+|+.||.++|-.+.+.........+ ...........+.||++.|.-+.|
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl-------------aa~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL-------------AAASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc-------------ccccccchhhhhccCcceEEEEEe
Confidence 3556899999999999999999999999998763322211110 011223345678899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
+.+.+.|-++..+|.|.+|-+-.+...... ....+-|.+++|..+|..++....||.|.+=.++....- --.-....
T Consensus 80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw-gKeLkg~~ 158 (1189)
T KOG2041|consen 80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW-GKELKGQL 158 (1189)
T ss_pred ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-chhcchhe
Confidence 999999999999999999998766543221 224567899999999999999999999988877653221 11111123
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCC-------cEEE----EEecCCCCeEEEEEc--------CCCCEEEEEECC
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-------ECVR----IFIGHRSMILSLAMS--------PDGRYMASGDED 568 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-------~~~~----~~~~h~~~I~~l~~s--------p~g~~l~sg~~d 568 (670)
...+.|++|...++.+-.+|.+.+||.+.. .+.. .+......|..+.|. |+...|+.+-.+
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 446889999999999999999999997532 1211 122222335566663 477899999999
Q ss_pred CeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---------cEEEEeCCCCccccccccccCCccccc
Q 005913 569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---------TVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 569 g~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
|.+.|..-.+. .++..- -.-.|....|+++|.+|+.+|.|. .|.+|.--. ..
T Consensus 239 Gr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------------~i 300 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------------HI 300 (1189)
T ss_pred ceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----------------hh
Confidence 99888754433 232221 124678899999999999998763 233332211 23
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
+.++....+-|++++|-..|..+|.+.+
T Consensus 301 ~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred eEEEecCCceeeeeEEcCCceEEEEEec
Confidence 5677777888999999999998887654
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=2.3e-09 Score=113.81 Aligned_cols=249 Identities=15% Similarity=0.237 Sum_probs=166.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 348 INTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.........++++|++++|.+... +|.|..|.+.... +..............
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------------g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------------GTLTLLNSVPSGGSS 88 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------------TEEEEEEEEEESSSC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------------ceeEEeeeeccCCCC
Confidence 334556778899999999998876 5689999877521 011122222223445
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE----ee----------CCCccEeEEEEecCCCEEEEEEC-CCcE
Q 005913 424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSSH-DRTA 487 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~l~~sp~g~~l~s~s~-dg~v 487 (670)
...++++|++++|+++. .+|+|.++++.....+.. +. .......++.|+|+|+++++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 56799999999998887 589999999987432221 11 12345678999999999888753 3589
Q ss_pred EEEECCCCc--e--eEEe-cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CCcE--EEEEec----C--CCCeE
Q 005913 488 RIWSMDRIQ--P--LRIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMIL 551 (670)
Q Consensus 488 ~lwd~~~~~--~--~~~~-~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~----h--~~~I~ 551 (670)
.+|+++... . ...+ .......+.++|+|+++++++.. .+++|.++++. ++.. +..... . .....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 2 1222 24456788999999999887765 46789999888 4432 222221 1 12578
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEeCC--CCe--eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913 552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~--~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~ 620 (670)
.|+++|||++|+++. ..+.|.+|++. ++. .+..+.........++++|+|++|+++. .++.|.+|+++.
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 899999999988765 56789999993 232 3334433344578999999999999887 557899998854
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=1.3e-09 Score=115.55 Aligned_cols=237 Identities=14% Similarity=0.201 Sum_probs=158.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--c--eeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEE
Q 005913 421 SGPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS 491 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~----Dg~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd 491 (670)
......++++|++++|.++.. +|.|..|++... . .+............++++|++.+++++. .+|++.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345566889999999998876 578999988764 2 2223332344556799999999999887 589999999
Q ss_pred CCC-CceeEE---ec----------ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCc--EE--EEE-ecCCCCeE
Q 005913 492 MDR-IQPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIF-IGHRSMIL 551 (670)
Q Consensus 492 ~~~-~~~~~~---~~----------~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~--~~--~~~-~~h~~~I~ 551 (670)
++. +..... +. .......++.|+|+++++++... ...|++|++.... .. ..+ .......+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 986 332222 21 12345779999999999888653 3579999987654 32 122 23445678
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEeCC--CCe--eeEEeeC----CC--cceEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 005913 552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMG----HT--SCVWTLAYSCEGSLLASGS-ADCTVKLWDVT 619 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~--~~~--~~~~~~~----h~--~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~ 619 (670)
.++|+|+|+++++.. .++.|.++++. ++. .+..+.. .. .....+.++|||++|+++. .+++|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999887655 57889999988 442 2222221 11 2577899999999877765 56789999995
Q ss_pred CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.... .+..+..+++.......++|+|+|++|+++..+.
T Consensus 276 ~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 276 PATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp TTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred cCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 4321 1123444444455578999999999999887654
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1e-10 Score=128.26 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=141.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~-dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
......+.+..|||||+.|+..+. ++ .|.+||+.+... .. +....+..
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~---lt~~~g~~ 264 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EK---VTSFPGIN 264 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EE---ecCCCCCc
Confidence 344556789999999999987643 33 477777654211 01 11112233
Q ss_pred EEEEEcCCCCEEEE-EeCCCe--EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCcee
Q 005913 425 YSASFSPLGDFILS-SSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL 498 (670)
Q Consensus 425 ~~l~~sp~~~~L~s-~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~~~ 498 (670)
...+|+|||+.|+. .+.+|. |++||+.+++. ..+..+........|+|+|+.++..+. ++ .|+++|+.+++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 46799999998764 556664 77788887654 334445555677899999998877653 33 5666788777654
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEE
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIM 572 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g--~I~ 572 (670)
+... ........+|+|+|++|+..+.+ + .|.++|+.+++... +... .......|+|+|+.|+..+.+ | .+.
T Consensus 344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 4321 22233457899999999886653 3 46667888876543 3322 122345899999988765543 3 377
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
+++. +|.....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7886 5666666766667778888887
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=5.7e-11 Score=125.15 Aligned_cols=188 Identities=19% Similarity=0.284 Sum_probs=156.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC---CCccEeEEEEe--------------------cCCCEEEEEECCCcE
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG---HNYPVWDVQFN--------------------PQGHYFASSSHDRTA 487 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~---h~~~V~~l~~s--------------------p~g~~l~s~s~dg~v 487 (670)
|...++|..+.||.+++|+...++....|.. -.+...+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4467899999999999999998877665542 12223333332 133567778889999
Q ss_pred EEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
.+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998887776 789999999999999999999999999999999999999999999999999999999999998
Q ss_pred ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-----CCEEE-EEECCCcEEEEeCCC
Q 005913 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-----GSLLA-SGSADCTVKLWDVTT 620 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-----g~~l~-sgs~Dg~I~iwd~~~ 620 (670)
+ +.|.+||+.+++.+..|.+|.++|.+++|.-+ |.++. +...+.-+.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999776 55544 445566788887765
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.3e-10 Score=117.06 Aligned_cols=263 Identities=16% Similarity=0.267 Sum_probs=165.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
....+..++|++|+++|.+ .+..++|++..... ..+......++++.|+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~------------------------------~~lt~~~~~~~~L~fS 82 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK------------------------------VVLCVELKKTYDLLFS 82 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc------------------------------EEEEeccceeeeeeec
Confidence 3447788999999999988 67789999876421 1111122378999999
Q ss_pred CCCCEEEEE-----eCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913 431 PLGDFILSS-----SAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 431 p~~~~L~s~-----s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
|.|.+|.+- ..+ -.+.+|++.++.....+......-|+..|++|..+.+-- ..+.+++|++...+.+..
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~ 161 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH 161 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee
Confidence 999988753 222 347799999854444444433334788888876543322 235677777654221111
Q ss_pred ecccCCCeeEEE----------------------------------------------------EcCCCCEEEE---EEc
Q 005913 501 MAGHLSDVDCVR----------------------------------------------------WHINCNYIAT---GSS 525 (670)
Q Consensus 501 ~~~~~~~v~~v~----------------------------------------------------~~p~~~~l~t---gs~ 525 (670)
.-|...|..+. |++-|+-|++ ..-
T Consensus 162 -kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 162 -KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred -eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence 11233344444 4443332211 111
Q ss_pred C---------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE--EECCCeEEEEeCCCCeeeEEeeCCCcceEE
Q 005913 526 D---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594 (670)
Q Consensus 526 d---------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--g~~dg~I~iwDl~~~~~~~~~~~h~~~V~s 594 (670)
| .++++.++. |.....--...++|.++.|+|+|+-+++ |-.--.+.|||++ +.++..+ ..++=.+
T Consensus 241 Dktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~ 316 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNT 316 (566)
T ss_pred cCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccc
Confidence 2 235555544 2222222234689999999999987665 4566789999985 4555444 4566678
Q ss_pred EEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 595 LAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 595 l~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
+-|+|.|++|+.+|.+ |.|-|||+.+.+. +..+... .-+-+.|+|||.++.+++..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~---------------i~~~~a~--~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL---------------IAKFKAA--NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhh---------------ccccccC--CceEEEEcCCCcEEEEEecc
Confidence 9999999999998865 7899999988433 3333332 34557899999999998754
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=7.1e-09 Score=110.20 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=161.8
Q ss_pred CEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913 364 SLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (670)
Q Consensus 364 ~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D 442 (670)
++++ +-..+|.|.|.|..+ .+....+......-..+.|+|||+++++++.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t----------------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd 57 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT----------------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRD 57 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-----------------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETT
T ss_pred cEEEEEecCCCEEEEEECCC----------------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCC
Confidence 4454 455689999999765 22334444333334557899999999999999
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEeccc-------CCCeeEEEEc
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-------LSDVDCVRWH 514 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~-------~~~v~~v~~~ 514 (670)
|.|.++|+.+.+.+..++.... ..+++++++|+++++++ .++.+.++|.++.++++.+... .+.+..+..+
T Consensus 58 g~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 58 GTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp SEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred CeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 9999999999999988886554 57899999999988776 6899999999999999887632 3457788888
Q ss_pred CCCCEEEEEEc-CCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEee----C
Q 005913 515 INCNYIATGSS-DKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLM----G 587 (670)
Q Consensus 515 p~~~~l~tgs~-dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~~----~ 587 (670)
|....+++.-. .+.|.+.|....+.+. .............|+|++++++++ ..++.|-++|..+++.+..+. .
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 88886655544 4889888987665432 233344567889999999987664 567799999999998876653 2
Q ss_pred CCcceEEEEEcCCC-CEEEEEEC---------CCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913 588 HTSCVWTLAYSCEG-SLLASGSA---------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657 (670)
Q Consensus 588 h~~~V~sl~~s~~g-~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~ 657 (670)
|..++..+- +|.. ...++++. ...+.+|+... +..+..++....+ .-++-+|+
T Consensus 217 ~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---------------wkvv~~I~~~G~g-lFi~thP~ 279 (369)
T PF02239_consen 217 HPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---------------WKVVKTIPTQGGG-LFIKTHPD 279 (369)
T ss_dssp EETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB---------------TSEEEEEE-SSSS---EE--TT
T ss_pred ccccccccc-CCCcceEEeeccccceecccccCCccccchhhc---------------CeEEEEEECCCCc-ceeecCCC
Confidence 444444442 3332 22222221 11233333333 3456667776666 77888999
Q ss_pred CcEEEEee
Q 005913 658 NLLFAAGA 665 (670)
Q Consensus 658 ~~~La~gs 665 (670)
++++.+..
T Consensus 280 s~~vwvd~ 287 (369)
T PF02239_consen 280 SRYVWVDT 287 (369)
T ss_dssp -SEEEEE-
T ss_pred CccEEeec
Confidence 99998873
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.4e-10 Score=119.41 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=151.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE----------
Q 005913 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF---------- 429 (670)
Q Consensus 360 s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---------- 429 (670)
.|-..++|....||.++||+............ ...-++..++..|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------------------------~~~~s~t~~~~~w~L~~~~s~~k 56 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------------------------IASLSGTCTYTKWGLSADYSPMK 56 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc-------------------------chhccCcceeEEEEEEeccchHH
Confidence 34577999999999999999876432211100 0001122222222
Q ss_pred ----------cCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 430 ----------SPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 430 ----------sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
+.+...++-|...|.|.+|++..++....+. +|.++|.++.|+.+-..|.+++.|+.+..|+....+.
T Consensus 57 ~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 57 WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 1234568888899999999999888877665 5899999999999999999999999999999999999
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-----CCEEEE-EECCCeE
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMAS-GDEDGTI 571 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~l~s-g~~dg~I 571 (670)
++.+.+....+.+++.+|||..+++++ +.|.+||+.+++.+..|.+|.++|+++.|--+ |.++.+ ...+..|
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 999999999999999999999999986 68999999999999999999999999999876 666655 4455667
Q ss_pred EEEeCCC
Q 005913 572 MMWDLAS 578 (670)
Q Consensus 572 ~iwDl~~ 578 (670)
.+|-...
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7886654
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=1.8e-10 Score=113.68 Aligned_cols=203 Identities=19% Similarity=0.354 Sum_probs=152.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
....+++++.++++...|.+|...|++.-+.+...- .+....+.+..|.+.|..+-
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEE
Confidence 346789999999999999999999999988876411 12234556778999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC--CCCceeEEecccCC
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLS 506 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~--~~~~~~~~~~~~~~ 506 (670)
|+-...++++++.|..+.---.+.+..+..|.- ..+..++.+.-. +...|...|.+....+ ..-.++..+.+|.+
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~ 198 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTG 198 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCccc
Confidence 999999999999998765444444443332221 111112222111 5566666676666554 34567888999999
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
.+.+++|.|....+++|..|..|.+||+.-++- .....+|...|..+...+.-+.+.+++.||.|.+||+..
T Consensus 199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999999999999975443 345678999999999888889999999999999999853
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=5.3e-11 Score=132.44 Aligned_cols=195 Identities=24% Similarity=0.313 Sum_probs=153.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (670)
Q Consensus 357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L 436 (670)
..+.-+...++.++.+..+-||+............ . .... -....-+-++++.-++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------~-er~~----l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------D-ERCT----LYSSLIIGDSAEELYI 148 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------C-ceEE----EEeEEEEeccCcEEEE
Confidence 44555678899999999999999875221110000 0 0000 0122233456667789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-EecccCCCeeEEEEcC
Q 005913 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI 515 (670)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-~~~~~~~~v~~v~~~p 515 (670)
++|+.-+.|.+|+.........+.+|.+.|.++.|+.+|+++++.|.|+++|+|++++.+... ..-+|...|..+.|+|
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence 999999999999998444445689999999999999999999999999999999999987766 5668999999999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
+ .+++++.|-++++|+.. +..+..+.+|.+ .|..++..++...++|++.||.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 99999999999999754 555557777764 599999999999999999999999999753
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3e-11 Score=139.91 Aligned_cols=194 Identities=20% Similarity=0.368 Sum_probs=161.8
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
..+.|-..|.++.-+|...+-++|+.||.|++|....+..+.+++. .+..|+.+.|+.+|..+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3445567888999999999999999999999999999988888763 34789999999999999999999999999987
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCC--C-cEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS--G-ECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~--~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
.++....+.|......+.|-. ..+++++ .++.+.+||..- + .++. ..|.+.++++++.|..+.|++||.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 667777888888888888854 5566644 568999999752 2 2333 7899999999999999999999999
Q ss_pred CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
|.|++||++..+.++.++. +. ...++++|+..|.++||++.....+
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence 9999999998887766653 44 5678999999999999999886543
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=9.7e-10 Score=106.56 Aligned_cols=233 Identities=17% Similarity=0.217 Sum_probs=158.7
Q ss_pred ccCEEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCC------ccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913 421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW 490 (670)
Q Consensus 421 ~~~V~~l~~sp---~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~dg~v~lw 490 (670)
...+..+.|.. +|. .++-+-.+|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 35567777763 444 45667778999999876555444444321 124578899999999999999999976
Q ss_pred ECCCCcee--EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-CCcEEEE-EecCCCCeEEEEEcC-CCCEEEE
Q 005913 491 SMDRIQPL--RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS 564 (670)
Q Consensus 491 d~~~~~~~--~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~-~~~h~~~I~~l~~sp-~g~~l~s 564 (670)
+...+... ...++|.-+.....|+. +.+.+.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+| .+.+|+|
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 66554433 37788999999888874 44789999999999999999 4444433 456888899999887 5789999
Q ss_pred EECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCC--CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913 565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 565 g~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
|+.|-.|++||.+ .++++..-. -.+.|+.+.++|. +.+|+++-.+ -.+|-++..+..... ..+..
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~----------~~~~s 296 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQ----------IVLPS 296 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchh----------eeeec
Confidence 9999999999998 566665432 3488999999994 3344444443 466777665432100 11233
Q ss_pred cCCCCCCeEEEEEecCCcEEEEee
Q 005913 642 LPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
...|.+-.+.-.|.....+||+++
T Consensus 297 ~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred cccccceeeccccccccceeeeee
Confidence 344444455555533334555544
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.1e-09 Score=114.06 Aligned_cols=269 Identities=16% Similarity=0.220 Sum_probs=189.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
=+-+.|||.|.||++--.-| |.+|-=.. ......+ .| ..|.-+.|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~----------------------------f~r~~RF-~H-p~Vq~idfSP~E 261 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES----------------------------FDRIQRF-YH-PGVQFIDFSPNE 261 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc----------------------------HHHHHhc-cC-CCceeeecCCcc
Confidence 47789999999999875554 77885321 0011111 24 357889999999
Q ss_pred CEEEEEeC-----------CCeEEEEeCCCCceeEEeeC--CCccEeE-EEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 434 ~~L~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
+||+|=|. ...++|||+.+|.....+.. ....+|. +.||.|+.|+|.-.. .+|.||+.....++.
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD 340 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence 99998653 25799999999998877766 3444554 589999999998776 579999887654444
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEE-----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--------
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-------- 566 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-------- 566 (670)
.-.-..+.|....|+|.++.||.=+ .-..+.+..+.+++.+++..-+.-.-..+.|-.+|.+|+.--
T Consensus 341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV 420 (698)
T ss_pred ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence 3344557788999999999888632 224677888888888877666655555677888899887632
Q ss_pred --CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcccccccc
Q 005913 567 --EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 567 --~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
.-..+.|+.++....-...-.-...|...+|-|.|+.+++-+.. .++.+|.+.+.. ..+.++..
T Consensus 421 ~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~ 489 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKE 489 (698)
T ss_pred cceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhh
Confidence 11235566655443322223355678999999999987776643 578899887522 23456777
Q ss_pred cCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 642 LPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
++. ...+.+.|+|.|+++++|+.-
T Consensus 490 ~dk--~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 490 LDK--KFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred hcc--cccceEEEcCCCcEEEEEEec
Confidence 765 467899999999999988754
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=2.2e-10 Score=113.01 Aligned_cols=247 Identities=16% Similarity=0.278 Sum_probs=163.1
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEeeCCC------------ccEeEEEEecCC--CEEEE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----NLVCYKGHN------------YPVWDVQFNPQG--HYFAS 480 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----~~~~~~~h~------------~~V~~l~~sp~g--~~l~s 480 (670)
...-|.++.|...|.+|++|..+|.|.++.-.... ....++.|. ..|..+.|.+++ ..|+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44678899999999999999999999999654322 223344443 457889999854 46888
Q ss_pred EECCCcEEEEECCCCc-----------------------------------eeEEe-cccCCCeeEEEEcCCCCEEEEEE
Q 005913 481 SSHDRTARIWSMDRIQ-----------------------------------PLRIM-AGHLSDVDCVRWHINCNYIATGS 524 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~-----------------------------------~~~~~-~~~~~~v~~v~~~p~~~~l~tgs 524 (670)
.+.|.+|++|.+.... |.+.+ ..|...|+++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8899999999874211 11222 2577789999999999888877
Q ss_pred cCCcEEEEECCC-CcEEEE--EecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeee------EE-----
Q 005913 525 SDKTVRLWDVSS-GECVRI--FIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV------TP----- 584 (670)
Q Consensus 525 ~dg~I~iwd~~~-~~~~~~--~~~h~-----~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~------~~----- 584 (670)
.|=.|-+|++.- .++... +..+. .-|++..|+|. .+.++-.+..|+|++-|++....- ..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 577899999863 233222 22222 34889999994 567777888999999999843211 10
Q ss_pred -----eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEecCC
Q 005913 585 -----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRN 658 (670)
Q Consensus 585 -----~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~ 658 (670)
+..--..|..+.|+++|+++++-.. -+|++||+..............-.+..+-..+... --.-+.++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 0111246788999999999987643 58999999765443222111000000001111111 1123578899999
Q ss_pred cEEEEeeCCC
Q 005913 659 LLFAAGALSK 668 (670)
Q Consensus 659 ~~La~gs~dg 668 (670)
..+.+|++..
T Consensus 342 ~~v~TGsy~n 351 (433)
T KOG1354|consen 342 SYVMTGSYNN 351 (433)
T ss_pred ceEecccccc
Confidence 9999998754
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=5.7e-10 Score=110.20 Aligned_cols=246 Identities=17% Similarity=0.282 Sum_probs=182.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.++.+.|+....-|...-+.+.+.|.++|||--....+ ........-..++++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q--------------------------~wpsI~~~mP~~~~~ 73 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ--------------------------YWPSIYHYMPSPCSA 73 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc--------------------------cCchhhhhCCCCceE
Confidence 345566677777777777889999999999997443111 011122234578999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC----CCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
+++.++...|+.|-..|++.-+.+. .....+.+..|...|..+-|+-....+++.+.|..+.---.+.+..+..+.
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence 9999999999999999999988654 344566778899999999999999999999999876554455444332211
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
- ...-.++.+.-. +...|...|.|.+..+ ..-..+.++.+|.+++++++|.|..+.|++|..|..+.+||+.-.+
T Consensus 154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 0 011111222111 5566767777766544 3456788899999999999999999999999999999999997554
Q ss_pred -eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 581 -CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 581 -~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
....+.+|...|..++.-+--+.+++++.||.|.+|+.+..
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 34567789999999998888889999999999999998754
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=5.4e-10 Score=108.30 Aligned_cols=246 Identities=17% Similarity=0.195 Sum_probs=165.2
Q ss_pred CCEEEEEEc---CCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 352 NGLNCASIS---QDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 352 ~~V~~l~fs---~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..+..+.|+ .+|. .++.+-.+|.|.++............. +....-......++
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~----------------------ls~~ki~~~~~lsl 127 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG----------------------LSSKKISVVEALSL 127 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc----------------------cchhhhhheeeeEE
Confidence 456666665 2455 566677788999988664211110000 00000001134678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEE-ec
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRI-MA 502 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~-~~ 502 (670)
.|++.+..++++-.+|.+.+-+...... ++..+.|..++|-..|+. +.+.+.+||.|+.+..||++-. +.+.. ..
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 8999999999999999998666554433 347889999999999987 5568899999999999999833 23322 44
Q ss_pred ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEeCCC
Q 005913 503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 503 ~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~--g~~l~sg~~dg~I~iwDl~~ 578 (670)
.|...|.++.-+| .+.+|+||+.|-.|++||.|+ ++++..- .-.+.|..+.++|. ++.|+++-.+| .+|-++..
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 6888999998874 678999999999999999994 5555432 34478999999994 34455554444 56666554
Q ss_pred C--e---eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEE-EEeCCCC
Q 005913 579 G--R---CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVK-LWDVTTS 621 (670)
Q Consensus 579 ~--~---~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~-iwd~~~~ 621 (670)
+ + .......|.+-++.-.|......|+||+ .|..++ +|-.-++
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 3 2 2334456777777777755556788876 566644 7754443
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=3.4e-11 Score=139.47 Aligned_cols=221 Identities=15% Similarity=0.255 Sum_probs=167.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
-..|.|+.=+|...+-++|++||.|++|....... .+..-......|+.+.|+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccCcchhhhhhhc
Confidence 35588888889999999999999999999764211 111122233889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE---CCCcEEEEECCCCc-eeEEecccCC
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQ-PLRIMAGHLS 506 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~dg~v~lwd~~~~~-~~~~~~~~~~ 506 (670)
.+|+.+..+..||.+.+|.+. .......+.|+....++.|-. ..+++++ .++.+.+||..-.. .-.+-..|.+
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 999999999999999999988 667777888999999999875 5677765 56899999975321 1122278999
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.++|+++-|....|++|+.+|.|++||++..+....+.. +. ...++++|+..|.|+||++..-..+..+.
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 999999999999999999999999999998887766654 34 56799999999999999998877776654
Q ss_pred C---CCcc--e--EEEEEcCCCCEEEEEECCCc
Q 005913 587 G---HTSC--V--WTLAYSCEGSLLASGSADCT 612 (670)
Q Consensus 587 ~---h~~~--V--~sl~~s~~g~~l~sgs~Dg~ 612 (670)
. |.+- . ..+... ..+.|.+|+.||+
T Consensus 2408 ~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2408 SEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred hhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 2 2211 0 112222 2346777777764
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.4e-08 Score=100.27 Aligned_cols=242 Identities=11% Similarity=0.143 Sum_probs=169.0
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CceeE--EeeCCCccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKL--NANLV--CYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~--~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~ 488 (670)
+..+.+.++-++|+|++++|.++..+ |.|.-|.++. +.... .......+-+.++++++|++++++. ..|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34566788899999999999888654 6777777764 33221 1112233447899999999998886 457899
Q ss_pred EEECCC-CceeE--EecccCCC----------eeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEE---ecCCCCeE
Q 005913 489 IWSMDR-IQPLR--IMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIF---IGHRSMIL 551 (670)
Q Consensus 489 lwd~~~-~~~~~--~~~~~~~~----------v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~---~~h~~~I~ 551 (670)
++-++. +.... ....|.+. +.+..+.|++++|++..- --.|.+|++..|+....- ......-+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 998854 33221 12234444 788999999999998763 246999999877653221 13345578
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEeCCCC-eeeEEeeC---------CCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913 552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMG---------HTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT 619 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~~~-~~~~~~~~---------h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~ 619 (670)
.|.|+|+|++.++.+ -+++|.+|..... ..+..++. -......+..++||++|.++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999888755 6899999998873 22333321 1235667889999999988753 3578888887
Q ss_pred CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..... +..+...++....-..+.|++.|.+|+++..++.
T Consensus 275 ~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 275 PDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 65422 3445566666666788999999999999887753
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=4.1e-08 Score=98.57 Aligned_cols=252 Identities=12% Similarity=0.188 Sum_probs=169.5
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.....+..+-++|+|++++|.++-. +|.|.-|.++.... .............+
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G------------------------~Lt~ln~~~~~g~~ 90 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG------------------------RLTFLNRQTLPGSP 90 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC------------------------eEEEeeccccCCCC
Confidence 3445567889999999999988754 57788888774210 01111111111223
Q ss_pred EEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee---EEeeCCCcc----------EeEEEEecCCCEEEEEEC-CCcEE
Q 005913 424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANL---VCYKGHNYP----------VWDVQFNPQGHYFASSSH-DRTAR 488 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~---~~~~~h~~~----------V~~l~~sp~g~~l~s~s~-dg~v~ 488 (670)
-+.+++++++++|+++.. .|.|.++-++....+ .....|.++ +....+.|+++++++.+- -..|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 378999999999998864 588999988653322 122224444 888999999999998863 24799
Q ss_pred EEECCCCceeEEe---cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC-cEEEEEec---------CCCCeEEEE
Q 005913 489 IWSMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLA 554 (670)
Q Consensus 489 lwd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~-~~~~~~~~---------h~~~I~~l~ 554 (670)
+|+++.++....- .......+.|.|||++++..+.+ -+++|.+|..... ..+..++. .......|.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9999866533211 13445678999999999887765 4889999998763 22222221 123567899
Q ss_pred EcCCCCEEEEEEC-CCeEEEEeCCC--Cee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCc
Q 005913 555 MSPDGRYMASGDE-DGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTST 622 (670)
Q Consensus 555 ~sp~g~~l~sg~~-dg~I~iwDl~~--~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~ 622 (670)
++|||++|+++.. ...|.+|.+.. ++. +.....+......+.|++.|++|+++..+ ..|.+|.++..+
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 9999999998752 34677877653 332 22223344456889999999999999866 469999887654
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=1.6e-08 Score=118.91 Aligned_cols=291 Identities=15% Similarity=0.175 Sum_probs=186.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
..+.|.++.+-++...++.+..+|.|.+....... ..........-...|.+++|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~W 128 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASW 128 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEE
Confidence 34679999999999999999999999998433200 01122222334578999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC-------------CC----------ceeEEeeC------------------------C
Q 005913 430 SPLGDFILSSSADTTIRLWSTK-------------LN----------ANLVCYKG------------------------H 462 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~-------------~~----------~~~~~~~~------------------------h 462 (670)
|||+..|+..+.++++.+-+-. -+ +.-..|+| +
T Consensus 129 SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~ 208 (928)
T PF04762_consen 129 SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW 208 (928)
T ss_pred CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence 9999999999999988876421 00 00011111 1
Q ss_pred CccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc---CCcEEEEE
Q 005913 463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD 533 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd 533 (670)
...-..|+|-.||.|||+.+- -+.+++|+-+ |.....-..-.+--.+++|.|.|++||+... ...|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 123456889999999999874 2689999976 4433333322333457899999999998765 34566676
Q ss_pred CCCCcEEEEEe----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--eEEeeC-CCcceEEEEEcCC-CCEEE
Q 005913 534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--VTPLMG-HTSCVWTLAYSCE-GSLLA 605 (670)
Q Consensus 534 ~~~~~~~~~~~----~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--~~~~~~-h~~~V~sl~~s~~-g~~l~ 605 (670)
++|-.-..|. .....|..+.|++|+..||....|. |.+|-..+..- -+.+.. ....+..+.|+|. ...|.
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 4554444443 3356799999999999999987665 99999887642 223332 2234555999995 45677
Q ss_pred EEECCCcEEEEeC----CCCcccc--------cccc--------c-cCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 606 SGSADCTVKLWDV----TTSTKVL--------KTEE--------K-SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 606 sgs~Dg~I~iwd~----~~~~~~~--------~~~~--------~-~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
..+.+|.+.++++ ..+.... .... . .....+.....+ ....+|.+++|++++..+|+-
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEE
Confidence 7777777766554 2221110 0000 0 001111111222 235789999999999878887
Q ss_pred eCCCC
Q 005913 665 ALSKT 669 (670)
Q Consensus 665 s~dgs 669 (670)
..||+
T Consensus 445 ~~d~~ 449 (928)
T PF04762_consen 445 TSDGS 449 (928)
T ss_pred ECCCC
Confidence 77763
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=3e-11 Score=125.10 Aligned_cols=205 Identities=22% Similarity=0.384 Sum_probs=156.6
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
....+.||...|..++--.+.+.+++++.|.+|++|+++. ..+..+|..|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4456789999999998888888999999999999999863 34678899999999999999998888765 78
Q ss_pred cEEEEECCCCceeEEec-----ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEe-----cCCCCeEEEE
Q 005913 486 TARIWSMDRIQPLRIMA-----GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLA 554 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~-----~h~~~I~~l~ 554 (670)
.+.+||.-.+.++..+. +..+.|.|+. +-+...+++| +...+|+++|.+.+..+..++ +..+-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999987666665332 1223344442 1234445554 778999999999887665554 3345689999
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE-EeCCCC
Q 005913 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL-WDVTTS 621 (670)
Q Consensus 555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i-wd~~~~ 621 (670)
..|.|++++++-.+|.|.+.|.++|+.+..++...-....++ .|..+.|+....|.++.| |....+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 999999999999999999999999999887765544444443 356677888888888888 765443
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=9.7e-10 Score=107.01 Aligned_cols=245 Identities=20% Similarity=0.349 Sum_probs=169.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC----------
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH---------- 420 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------- 420 (670)
...|+++.|...|.|||+|...|.|.+|.-..... +. .+-.+.+++|
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ce----------------------ykf~teFQshe~EFDYLkSl 82 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CE----------------------YKFFTEFQSHELEFDYLKSL 82 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc-cc----------------------hhhhhhhcccccchhhhhhc
Confidence 35699999999999999999999999998654220 00 0111222233
Q ss_pred --ccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc------------------------------------------
Q 005913 421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNA------------------------------------------ 454 (670)
Q Consensus 421 --~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~------------------------------------------ 454 (670)
...|..+.|..++. .++..+.|.+|++|.+....
T Consensus 83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~ 162 (460)
T COG5170 83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK 162 (460)
T ss_pred cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence 24577888876553 56667789999999864220
Q ss_pred eeEEe-eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecccC-----CCeeEEEEcCC-CCEEEEEE
Q 005913 455 NLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS 524 (670)
Q Consensus 455 ~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~-----~~v~~v~~~p~-~~~l~tgs 524 (670)
+.+.+ ..|...|.++.|..+...++++ .|=.|.+|+++-... +.-++.|. ..|++..|||. ++.+...+
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 00112 3578889999999998888776 457899999864322 22223332 34788899985 56777888
Q ss_pred cCCcEEEEECCCCcEE----------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeC
Q 005913 525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (670)
Q Consensus 525 ~dg~I~iwd~~~~~~~----------------~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~ 587 (670)
+.|.|++-|++..... .-|.+-...|..+.|+++|+++++-+. -++++||.+.. .++.++.-
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 9999999999843211 112233456889999999999988764 57999999864 56777644
Q ss_pred C------------CcceE---EEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 588 H------------TSCVW---TLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 588 h------------~~~V~---sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
| ...|. .+.||.|...+.+|+..+..-||-+.+
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 4 22343 478898999999999888888887543
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4e-09 Score=110.60 Aligned_cols=231 Identities=17% Similarity=0.241 Sum_probs=159.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (670)
Q Consensus 355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (670)
++..||.|..+.|-- ..+.+.+|++.... .....-|...|+.+.+||.+.
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~-----------------------------~~~~kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFK-----------------------------TIQHKLSVSGITMLSLSPGPE 178 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCcc-----------------------------ceeeeeeccceeeEEecCCCC
Confidence 799999998765533 45689999976411 111223567888899998643
Q ss_pred --EEEE-----EeCCCeEEEEeCCCCce--eEEeeC-CCccEeEEEEecCCCEEE-EEE--C---------CCcEEEEEC
Q 005913 435 --FILS-----SSADTTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFA-SSS--H---------DRTARIWSM 492 (670)
Q Consensus 435 --~L~s-----~s~Dg~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~g~~l~-s~s--~---------dg~v~lwd~ 492 (670)
.+|+ .+.-+.|+||....... ....++ ....-..+.|++-|.-|+ .++ - ..++++.++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 4442 45567899998762211 111111 112223577887665432 222 2 347888888
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC---
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--- 567 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~--- 567 (670)
+.......+ ...++|.++.|+|+|+-+++ |-.-..+.|+|++ ++++..+ ..++-.++-|+|.|++|+.+|-
T Consensus 259 ~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 259 QGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred cCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCC
Confidence 843333333 35689999999999987665 6677899999986 4455443 4577788999999999998774
Q ss_pred CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC------CCcEEEEeCCCC
Q 005913 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVTTS 621 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~~~ 621 (670)
.|.|-|||..+.+++..+..... +-+.|+|||++++|++. |+.++||++...
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 48999999999888888765543 45899999999999874 688999998754
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.9e-08 Score=120.47 Aligned_cols=252 Identities=14% Similarity=0.184 Sum_probs=163.1
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 355 NCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 355 ~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
..++++++ +.++++-+.++.|++||........... .+..... ++.. -.++-....++++.+++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~~--------dG~~-----~~a~f~~P~GIavd~~g 635 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGLR--------DGSF-----EDATFNRPQGLAYNAKK 635 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCCC--------CCch-----hccccCCCcEEEEeCCC
Confidence 35688874 6677777788899999976421110000 0000000 0000 01122345789999988
Q ss_pred CEEEEEe-CCCeEEEEeCCCCceeEEeeCC-----------------CccEeEEEEec-CCCEEEEEECCCcEEEEECCC
Q 005913 434 DFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 434 ~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~ 494 (670)
+.|+++. ..+.|+.+|+.++. +.++.+- -..-++++++| ++..+++.+.++.|++||..+
T Consensus 636 n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 636 NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 8666554 45789999987654 3322110 11246899999 566677777889999999877
Q ss_pred CceeEEecc---------------cCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEEec-------------
Q 005913 495 IQPLRIMAG---------------HLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG------------- 545 (670)
Q Consensus 495 ~~~~~~~~~---------------~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~------------- 545 (670)
+... .+.+ .......++++|+++.|+ +.+.++.|++||+.++.......+
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 6432 2221 112356799999998555 455678999999987653221100
Q ss_pred C--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-------------CCCcceEEEEEcCCCCEE
Q 005913 546 H--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-------------GHTSCVWTLAYSCEGSLL 604 (670)
Q Consensus 546 h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-------------~h~~~V~sl~~s~~g~~l 604 (670)
+ -.....++++++|..+++-..++.|++||..++....... +.-.....++++++|+++
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 0 0124588999999988888899999999998776543221 111246789999999999
Q ss_pred EEEECCCcEEEEeCCCCcc
Q 005913 605 ASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 605 ~sgs~Dg~I~iwd~~~~~~ 623 (670)
++-+.+++|++||+.++..
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 9999999999999988654
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=5e-08 Score=114.69 Aligned_cols=316 Identities=16% Similarity=0.130 Sum_probs=183.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ccccccCCCCC-----CCCCCCccccCC-CCCc---------
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGE-----NDTTPREDIIGP-NGRK--------- 411 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~--------- 411 (670)
.-..+|.|++||||+.+||..+.+|+|.+-+.+-.. .........+. ......+..+.. .++.
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 346789999999999999999999999887543110 00000000000 000001111100 0000
Q ss_pred ---cceeeeecCccCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913 412 ---RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (670)
Q Consensus 412 ---~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 482 (670)
.....+. +...-..|+|-.||.++|+.+. . ..+|||+-+ |....+...-.+--.+++|.|.|+.+|+.-
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 0011122 4446678999999999998764 2 579999976 443333332233334689999999999886
Q ss_pred C---CCcEEEEECCC---CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--EEEe-cCCCCeEEE
Q 005913 483 H---DRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFI-GHRSMILSL 553 (670)
Q Consensus 483 ~---dg~v~lwd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~-~h~~~I~~l 553 (670)
. ...|.+|.-+. ++-.-.+......|..+.|++++..||....|. |.+|-..+-.-- +.+. .....+..+
T Consensus 276 ~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred EcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 4 34666776432 221111223456799999999999999987665 999998765421 1222 223345569
Q ss_pred EEcCC-CCEEEEEECCCeEEEEeCC----CC--------eeeEEee-----------------------CCCcceEEEEE
Q 005913 554 AMSPD-GRYMASGDEDGTIMMWDLA----SG--------RCVTPLM-----------------------GHTSCVWTLAY 597 (670)
Q Consensus 554 ~~sp~-g~~l~sg~~dg~I~iwDl~----~~--------~~~~~~~-----------------------~h~~~V~sl~~ 597 (670)
.|+|. ...|...+.+|.+..+++. .+ ..+..+. ....+|.+++|
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 99994 4456666666766655432 11 0111110 12467999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcccccccccc-CCccc--ccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-GTNRL--RSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
++++..+++-..||+|.+|............... ..-.. ............+..+.|..++.+++....+
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 9999889999999999999976543221000000 00000 0011122335568889998888777766554
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=7.5e-09 Score=107.32 Aligned_cols=283 Identities=14% Similarity=0.164 Sum_probs=186.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
..-++..++|||.|.+|++.... .|.+|.-.... .+.. -....|+.+.|
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------------------------~l~~--~~~~~V~~~~f 79 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------------------------KLVR--FRHPDVKYLDF 79 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchh----------------------------heee--eecCCceeccc
Confidence 34568899999999999988544 48888754211 1111 12356899999
Q ss_pred cCCCCEEEEEeCCC---------------eEEEEeCCCCceeEEeeCCCcc--Ee-EEEEecCCCEEEEEECCCcEEEEE
Q 005913 430 SPLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 430 sp~~~~L~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
+|.+.+|.+-+..+ .+.+||+.++..+..+.+...+ .| -+.|+-+..|.|-. ....+.+++
T Consensus 80 SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e 158 (561)
T COG5354 80 SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHE 158 (561)
T ss_pred CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEe
Confidence 99999999876433 4999999999999988887766 77 78999988887665 335799999
Q ss_pred CC-CCc--eeEEecccCCCeeEEEEcCCCC--EEEE-----EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 005913 492 MD-RIQ--PLRIMAGHLSDVDCVRWHINCN--YIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561 (670)
Q Consensus 492 ~~-~~~--~~~~~~~~~~~v~~v~~~p~~~--~l~t-----gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~ 561 (670)
+. +.. +...+ ....|....|+|.++ .|+. ++.++++++|.+..+..+.+..--...-..+.|++.|.+
T Consensus 159 ~t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ 236 (561)
T COG5354 159 ITDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKY 236 (561)
T ss_pred cCCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCce
Confidence 62 211 11111 135677888888643 3443 557889999999877766554333334457889999998
Q ss_pred EEEEE-----------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccc
Q 005913 562 MASGD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTE 628 (670)
Q Consensus 562 l~sg~-----------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~ 628 (670)
|+.-. ....++++++....+-.. ....++|...+|.|.++.+++.+ .+-.+.++|+...-...-.+
T Consensus 237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe 315 (561)
T COG5354 237 LLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE 315 (561)
T ss_pred EEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccceEEecCC
Confidence 76532 235688888874333322 25678999999999888766554 67889999988762221111
Q ss_pred ccc------CCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 629 EKS------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 629 ~~~------~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+. ...+.-+++-+....+. ...|+|-|+++++|..+|+
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gn--i~i~~~~~rf~~~~~~~~~ 360 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGN--IEIFDPAGRFKVAGAFNGL 360 (561)
T ss_pred cccccccccCcccEEEEecCCccccc--eEEeccCCceEEEEEeecC
Confidence 110 01112223334333333 3567888888888776653
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.6e-10 Score=118.18 Aligned_cols=297 Identities=15% Similarity=0.194 Sum_probs=200.3
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (670)
Q Consensus 338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (670)
.+..+.+..|.+|.+.|..++--.+.+-+++++.|.+|++|.+...+... +......++
T Consensus 722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY 780 (1034)
T KOG4190|consen 722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY 780 (1034)
T ss_pred ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence 44556666788999999998887788889999999999999987532111 112244567
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEec--CCCEEEEE-ECCCcEEEEEC
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP--QGHYFASS-SHDRTARIWSM 492 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp--~g~~l~s~-s~dg~v~lwd~ 492 (670)
..|..+|.++-|-.+.++++++ ||.|++||.--++.+.... ...+.+..+..-+ +...+..| +...+|+++|.
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence 8999999999999888888776 7889999987666554221 1122233333333 34444444 67889999999
Q ss_pred CCCceeEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 493 ~~~~~~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
+.......++ +...-+.|++..+.|++++++-++|+|.+.|.++|+.+..+.........++ .|..+.|+....
T Consensus 859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal 937 (1034)
T KOG4190|consen 859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL 937 (1034)
T ss_pred ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc
Confidence 8876554443 4456689999999999999999999999999999999988776655555554 466678888888
Q ss_pred CCeEEE-EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913 568 DGTIMM-WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646 (670)
Q Consensus 568 dg~I~i-wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (670)
|.++.+ |....|....+.+....+..-+. .-|.-|+++...+.+.||.-......... . ..+ ......
T Consensus 938 dHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ha~st-----i---tKi-R~d~f~ 1006 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHAEST-----I---TKI-RPDEFP 1006 (1034)
T ss_pred cceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhhhhhhh-----h---ccc-cccccC
Confidence 888988 98777766555543332221111 13556777777777788753221111000 0 000 112334
Q ss_pred CCeEEEEEecCCcEEEEeeCCCC
Q 005913 647 TPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 647 ~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..++++.-|-|.-+.+|...|.
T Consensus 1007 G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 1007 GTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred CccceeeeccccchhhccCCCCc
Confidence 45677777777777777776654
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=1.6e-08 Score=96.92 Aligned_cols=232 Identities=10% Similarity=-0.011 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC-CCEEEEEe
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS 440 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s 440 (670)
...+||.|+..|...+|...+... .......|...|+-+.=..+ .--+..++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~---------------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~s 135 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG---------------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIAS 135 (344)
T ss_pred cccEEEeccccceeeeecccCccc---------------------------ceeeecccccchhhhhhhcccccceeecc
Confidence 567899999999999999875211 11122223232221111111 22466788
Q ss_pred CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE-EecccCCCeeEEEEcCCC
Q 005913 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR-IMAGHLSDVDCVRWHINC 517 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~-~~~~~~~~v~~v~~~p~~ 517 (670)
.|.++++.++..+..........-.+.++.+++++++.++.+....|..|.++... .++ ........-.+..|+.+.
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 89999999887654433332222348899999999999999999999999987532 223 223344556788999999
Q ss_pred CEEEEEEcCCcEEEEECCCCcEEEE-----EecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeCCCCeeeEEee----
Q 005913 518 NYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM---- 586 (670)
Q Consensus 518 ~~l~tgs~dg~I~iwd~~~~~~~~~-----~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl~~~~~~~~~~---- 586 (670)
..+|+++.||++.|||++....... -..|.+.+..+.|++-|. +|+..-.-+.+.+.|+++++....+.
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 9999999999999999996543322 235889999999998664 45555566889999999987655443
Q ss_pred ---CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 587 ---GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 587 ---~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.|. ..|..-.|+.++.-+.+.+.+ .+.=|++.+.
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 233 337777888777666666554 3445665543
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=1.4e-07 Score=98.27 Aligned_cols=241 Identities=12% Similarity=0.050 Sum_probs=150.8
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 359 fs~d~~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
+|||++.|.++.. +..|.+||..+........... .-+.. .......++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-------------------~p~~~--~~~~~~~~~ 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-------------------GPRFL--VGTYPWMTS 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-------------------Cchhh--ccCccceEE
Confidence 9999999887765 7889999998744322111000 00000 112234678
Q ss_pred EcCCCCEEEEEe-C-CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----Ee
Q 005913 429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM 501 (670)
Q Consensus 429 ~sp~~~~L~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-----~~ 501 (670)
++|||++|++.. . +..|.++|+.+++.+..+.... ...-...+++. +.+-|.||......++...... .+
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 999999998776 3 6899999999999888776532 22222222222 2233455555554443211111 11
Q ss_pred cccCCCe-eEEEEcC-CCCEEEEEEcCCcEEEEECCCC-----cEEEEEec-------CCCCeEEEEEcCCCCEEEEEE-
Q 005913 502 AGHLSDV-DCVRWHI-NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG-------HRSMILSLAMSPDGRYMASGD- 566 (670)
Q Consensus 502 ~~~~~~v-~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~-------h~~~I~~l~~sp~g~~l~sg~- 566 (670)
.+-...+ ..-.|.+ +|.++++... |+|.+.|+... .....+.. ..+.+.-++++|+|+.++...
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100000 0013445 8888888776 99999996433 33333221 123345599999999888743
Q ss_pred ---------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCcccc
Q 005913 567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVL 625 (670)
Q Consensus 567 ---------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~~ 625 (670)
..+.|.++|..+++.+..+.. ...+++++++||++ +|++.. .++.|.|+|..+.+...
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 225799999999999988864 34789999999999 777666 67889999998876543
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=7.4e-08 Score=99.02 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=143.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC------CC-----ccEeEEE-Eec-CCCEEEEEECCCcEEEEECCC
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------HN-----YPVWDVQ-FNP-QGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~------h~-----~~V~~l~-~sp-~g~~l~s~s~dg~v~lwd~~~ 494 (670)
..+.||+.++-. ..|.|++||..+......--+ .. .+..-+. |++ +|.+++..|. |.+.+.+...
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 345677776643 457799999886543221111 00 1111111 444 7888888887 7788887766
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
+..+. .+|...|.-..+..+++-++.|..|| .+-++|..+++..+ +...-+.|.++..+|+|++++.+.....|.+
T Consensus 351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 54443 35677788888888888999999999 89999998887655 4556688999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----cEEEEeCCCCc
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----TVKLWDVTTST 622 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----~I~iwd~~~~~ 622 (670)
.|+.+|.....-+...+-|+.++|||+++++|-+--+| .|+++|+..++
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 99999987655555668899999999999999887665 68999998864
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=5.3e-08 Score=101.14 Aligned_cols=257 Identities=13% Similarity=0.142 Sum_probs=167.1
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc---------------EEEEECCCCCccccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQG 394 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~---------------I~Iwdl~~~~~~~~~~~~~~ 394 (670)
..+.+|.......+ .++. +..|.-+.|||.+++|.+=+..+. +.+||..+.
T Consensus 53 ~~V~~~~g~~~~~l-~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----------- 118 (561)
T COG5354 53 AGVECWGGPSKAKL-VRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG----------- 118 (561)
T ss_pred cceEEccccchhhe-eeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc-----------
Confidence 34556654443322 2222 346999999999999998655444 667776542
Q ss_pred CCCCCCCccccCCCCCccceeeeecCccC--EE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEE
Q 005913 395 ENDTTPREDIIGPNGRKRSYTLYQGHSGP--VY-SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQ 470 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~ 470 (670)
..+..+.+...+ .+ -+.|+-+..++|-... ..++|+++...-...-+.. ....|....
T Consensus 119 -----------------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 119 -----------------MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred -----------------eeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEE
Confidence 222222232222 33 5778888888775433 4699999722211111111 134588889
Q ss_pred EecCC--CEEEE-----EECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-----------cCCcEEEE
Q 005913 471 FNPQG--HYFAS-----SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-----------SDKTVRLW 532 (670)
Q Consensus 471 ~sp~g--~~l~s-----~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-----------~dg~I~iw 532 (670)
|+|.+ ..|+. .+.++++++|.+-.+..+..-.-....-..+.|++.|+++++-. ....++|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 99953 33443 35788999999987777665444444445788999999887632 12468888
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASG--DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg--~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
+++ +..++......++|...+|+|.++.+++. -.+-.+.++|++.. ... ......=..+.|||.+++++.++-|
T Consensus 261 ~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 261 RIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred eec-ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCC
Confidence 887 44444444668999999999998877654 47888999999876 332 2334444668899999999998876
Q ss_pred ---CcEEEEeCCCCc
Q 005913 611 ---CTVKLWDVTTST 622 (670)
Q Consensus 611 ---g~I~iwd~~~~~ 622 (670)
|.|-+||.....
T Consensus 337 nl~gni~i~~~~~rf 351 (561)
T COG5354 337 NLQGNIEIFDPAGRF 351 (561)
T ss_pred ccccceEEeccCCce
Confidence 689999987654
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5.6e-08 Score=101.73 Aligned_cols=275 Identities=11% Similarity=0.130 Sum_probs=175.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 351 HNGLNCASISQDGSLVAGGFS-----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~-----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
|.+|.-+.|||+.+||++-+. ...+.|||+.++...... ....+
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF-------------------------~~~~~ 303 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF-------------------------PVIKS 303 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce-------------------------eccCC
Confidence 456999999999999998542 256899999874332211 11111
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-----CCcEEEEECCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARIWSMDR 494 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-----dg~v~lwd~~~ 494 (670)
....-.-+.||.|++++|--..+ +|.||+......+-.-.-.-..|....|+|.+..||--.. -..+.+..+-+
T Consensus 304 ~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 304 PYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred CccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc
Confidence 22222346899999999977665 6999998764433222223456888999999888776432 23566777777
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSS----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
++.++...-+.-.=..+-|-.+|.||+.--. -..+.|+.++.....-....-...|...+|-|.|..+++
T Consensus 383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 7766665544332334566678888876321 113455555544332222334567889999999998776
Q ss_pred EEC---CCeEEEEeCCC-C---eeeEEeeCCCcceEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCccccccccccCCc
Q 005913 565 GDE---DGTIMMWDLAS-G---RCVTPLMGHTSCVWTLAYSCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTN 634 (670)
Q Consensus 565 g~~---dg~I~iwDl~~-~---~~~~~~~~h~~~V~sl~~s~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~ 634 (670)
-+. ..++.+|-+.+ . +.+..+.. ...+.+.|+|.|++++.++ ..|.+.++|.......
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k---------- 530 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK---------- 530 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh----------
Confidence 543 35788888763 2 23333332 4567899999999988764 5688999998752210
Q ss_pred ccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
....+.| ...+.+.|.|.|+++++++..+
T Consensus 531 ----~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 531 ----DTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ----hccCccc-cccccceECCCCCEEEEeeehh
Confidence 0111222 2467789999999999988653
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=2.9e-09 Score=114.23 Aligned_cols=244 Identities=20% Similarity=0.301 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 351 HNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 351 ~~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.-.|-.+.|||. -.+-++.+....-.||++.... ....-..+.||+..|+.+.
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n 121 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDIN 121 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceeccc
Confidence 345788889875 4455666666667789986411 1223456789999999999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccC
Q 005913 429 FSPLGD-FILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHL 505 (670)
Q Consensus 429 ~sp~~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~ 505 (670)
|+|... .+++++.|..|..||+++... +..+..-......+.|+-....+.+.++.+.|++||++.+ .++..+++|.
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v 201 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV 201 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc
Confidence 999765 788999999999999987543 3344444445677999886666777778889999999865 5778889999
Q ss_pred CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeCC---
Q 005913 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLA--- 577 (670)
Q Consensus 506 ~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl~--- 577 (670)
..|+.++|+. ....+.+++.||+|..||..... ..+. .....+|..-.+-|-|. ++.-.-.+..+.+++.+
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d 280 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD 280 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence 9999999874 34568889999999999986432 2222 23445677777777443 33222222244444433
Q ss_pred ------C-CeeeEEeeCCCcceEEEEEcCCC----------CEEEEEECCCcEEEEeCCC
Q 005913 578 ------S-GRCVTPLMGHTSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 578 ------~-~~~~~~~~~h~~~V~sl~~s~~g----------~~l~sgs~Dg~I~iwd~~~ 620 (670)
+ .+++.++.||...|....|-..+ -.|+|-+.|.++++|-+.+
T Consensus 281 ~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 281 LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 36788999999988777664322 2799999999999999865
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=3.2e-07 Score=89.71 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=136.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (670)
Q Consensus 357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L 436 (670)
++.++||++||+- +|..|.|-.....-... .......+...-.-..++||||+.+|
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si-----------------------~~kcqVpkD~~PQWRkl~WSpD~tlL 58 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI-----------------------IGKCQVPKDPNPQWRKLAWSPDCTLL 58 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhe-----------------------eEEEecCCCCCchheEEEECCCCcEE
Confidence 5678899999987 88888887755311100 01111222233345678999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeeC-------CCccEeEEEEecC------CCEEEEEECCCcEEEEECCC-----Ccee
Q 005913 437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL 498 (670)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~------g~~l~s~s~dg~v~lwd~~~-----~~~~ 498 (670)
|.+...|+|+++|+.. ..+..+.. -...|.++.|.+. ...|++-..+|.++-|-+.. .+..
T Consensus 59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 9999999999999985 33333332 1356777777652 22466667778777766422 2222
Q ss_pred EEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE---cCCCCEEEEEECCC---
Q 005913 499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG--- 569 (670)
Q Consensus 499 ~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~---sp~g~~l~sg~~dg--- 569 (670)
..+. .+...|.++.|+|..+.|++|+.... ..+.. ......+++-.. +|.... ++...|+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~ 206 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----KASSCGLTAWRILSDSPYYKQ-VTSSEDDITA 206 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----cccccCceEEEEcCCCCcEEE-ccccCccccc
Confidence 3332 24668999999999999988775322 00000 011111111111 111111 1111111
Q ss_pred ---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 570 ---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+..+|.+-+.+...........|..|..||||..||+...+|.|.+|++.+-.
T Consensus 207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 12334433332222222345789999999999999999999999999998754
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=1.3e-07 Score=97.14 Aligned_cols=172 Identities=16% Similarity=0.194 Sum_probs=136.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEecccCCCeeE
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC 510 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-~v~lwd~~~~~~~~~~~~~~~~v~~ 510 (670)
+|++++..|. |...+.+...+-.+. -+|...|.-..+..++.-++.|..|| .+-++|.++++..+ +....+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence 5788888886 567776655443333 34666788888888888999999999 99999999876544 5557789999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEeCCCCeeeEEee
Q 005913 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPLM 586 (670)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg----~I~iwDl~~~~~~~~~~ 586 (670)
+..+|+|++++++.....|.++|+.+|+....-....+-|+.++|||+++++|-+--+| .|+++|+..++.....
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT- 485 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT- 485 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-
Confidence 99999999999999999999999999998777677778899999999999999887665 5999999988765433
Q ss_pred CCCcceEEEEEcCCCCEEEEEE
Q 005913 587 GHTSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 587 ~h~~~V~sl~~s~~g~~l~sgs 608 (670)
..++-=.+-+|.|++++|.--+
T Consensus 486 T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCcccccCcccCCCCcEEEEEe
Confidence 2333335678899999776554
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.8e-07 Score=101.34 Aligned_cols=191 Identities=11% Similarity=-0.015 Sum_probs=122.5
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 353 ~V~~l~fs~d~~~-La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.+....|||||+. ++..+.+ ..|.++|+.+. ..+.+....+.+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-----------------------------~~~~lt~~~g~~~~~~ 239 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-----------------------------KKEKIASSQGMLVVSD 239 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-----------------------------cEEEEecCCCcEEeeE
Confidence 6778999999985 6644333 45777776541 1122223445566778
Q ss_pred EcCCCCEEEEE-eC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCceeEEec
Q 005913 429 FSPLGDFILSS-SA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQPLRIMA 502 (670)
Q Consensus 429 ~sp~~~~L~s~-s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~~~~~~~ 502 (670)
|+|||+.|+.. +. +..|.++++.++... .+..+........|+|||+.++..+.. + .|.++|+.+++..+...
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 99999877643 33 356888888776543 333333333456899999987777632 3 68888888777655433
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~ 570 (670)
.. .. ...|+|+|++|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+..+.+ ..
T Consensus 319 ~g-~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 319 HG-KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred CC-Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 21 11 24899999999876653 368888988886543 3332 233468899999988765533 23
Q ss_pred EEEEeCCC
Q 005913 571 IMMWDLAS 578 (670)
Q Consensus 571 I~iwDl~~ 578 (670)
+.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 66667643
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.4e-07 Score=100.40 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=129.5
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEEC---CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN 518 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~---dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 518 (670)
..|.+-|.+... .+.+.... .+..-.|+|+|+. ++..+. +..|.++|+.+++...... ..+...+..|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355555555333 33333333 7778999999985 555443 3568889998887655543 445566788999998
Q ss_pred EEEEEEc---CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEeCCCCeeeEEeeCCCcce
Q 005913 519 YIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCV 592 (670)
Q Consensus 519 ~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g--~I~iwDl~~~~~~~~~~~h~~~V 592 (670)
.++.... +..|+++|+.++...+ +..+.+......|+|||+.|+..+.. | .|+++|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 8775432 3578888988877544 44444434566899999987776533 2 688889987765332221 11
Q ss_pred EEEEEcCCCCEEEEEECC---------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 593 WTLAYSCEGSLLASGSAD---------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
....|||+|+.|+..+.. ..|.+.|+.++.. ..+.. . .......|+|||+.++.
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------------~~LT~---~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------------RRLTA---N-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------------EECCC---C-CCcCCeEECCCCCEEEE
Confidence 234899999988877654 2567777766532 11111 1 12335789999998887
Q ss_pred eeCCC
Q 005913 664 GALSK 668 (670)
Q Consensus 664 gs~dg 668 (670)
.+..+
T Consensus 385 ~~~~~ 389 (419)
T PRK04043 385 IKYLG 389 (419)
T ss_pred EEccC
Confidence 76554
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=1.8e-06 Score=87.11 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=147.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-CCC
Q 005913 356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG 433 (670)
Q Consensus 356 ~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~ 433 (670)
++.|.+ ++.++++....+.|..|+..+. ....+... . ..++++. ++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------------------~~~~~~~~-~-~~G~~~~~~~- 51 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------------------EVEVIDLP-G-PNGMAFDRPD- 51 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------------------EEEEEESS-S-EEEEEEECTT-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------------------eEEEEecC-C-CceEEEEccC-
Confidence 578887 7888888888999999997641 11111111 2 6777887 55
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeC-----CCccEeEEEEecCCCEEEEEECC--------CcEEEEECCCCceeEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI 500 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp~g~~l~s~s~d--------g~v~lwd~~~~~~~~~ 500 (670)
..|+.+...+ +.++|..+++....... ......++++.|+|...++.... |.+..++.. ++. ..
T Consensus 52 g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~ 128 (246)
T PF08450_consen 52 GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV 128 (246)
T ss_dssp SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE
T ss_pred CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EE
Confidence 5555555554 56669888765443332 34668899999999977776643 457777776 443 33
Q ss_pred ecccCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcE----EEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~----~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
+.......+.++|+|+++.|+ +-+..+.|..+++..... .+.+ ....+....+++..+|++.++....+.|.
T Consensus 129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 344456788999999999776 455678899999863221 2223 22223478899999999888888899999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEE-cCCCCEEEEEE
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGS 608 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~-s~~g~~l~sgs 608 (670)
++|.. |+.+..+......+++++| .++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99977 8888888766568999999 46656555443
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=4.9e-08 Score=104.59 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=173.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++-+|...|.-+.|+.+.+.|-+...+|.|.||-+-...... --.-....+.|.
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E--------------------------EMiNnRnKSvV~ 119 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE--------------------------EMINNRNKSVVV 119 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH--------------------------HHhhCcCccEEE
Confidence 678899999999999999999999999999999876422100 001112346789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-------e
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-------P 497 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-------~ 497 (670)
+++|+.+|..++..-.||.|.+=.++..+.- +.+++ .....+.|++|...++.+-..|.+.++|....- +
T Consensus 120 SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c 197 (1189)
T KOG2041|consen 120 SMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC 197 (1189)
T ss_pred EEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence 9999999999999999999888777643321 11222 224468999999998888889999999976421 1
Q ss_pred eE----EecccCCCeeEEEEc--------CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 498 LR----IMAGHLSDVDCVRWH--------INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 498 ~~----~~~~~~~~v~~v~~~--------p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
.. .+......|..+.|. |+...++++..+|.+.+..-.+......+. ..-.|..+.|+|+|..|+.+
T Consensus 198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEc
Confidence 11 112222235556664 577899999999998887544433332332 23668899999999999998
Q ss_pred ECC---------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 566 DED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 566 ~~d---------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
|.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|.+=+++..
T Consensus 277 G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence 854 3566665 4677888888888999999998776666554 4677777666543
No 286
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.1e-10 Score=122.59 Aligned_cols=272 Identities=15% Similarity=0.213 Sum_probs=180.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+|..+...-+|++||-+.++|++|+..|.|++|++.++ .......+|..+|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence 56778889999999999999999999999999998762 22233567999999
Q ss_pred EEEEcCCCCEEEEEeCCC--eEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-
Q 005913 426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM- 501 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~- 501 (670)
-+.-+.+|..+++.+.-. -..+|++.. +...+.|.+ -.++.|+.....-+.|+....+.+||+.++.++..+
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 999999999877655433 477999864 344444543 346888876655566666678999999998877653
Q ss_pred c---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 502 ~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
. +....-++..|+|+...++- || .+||++..+.++.|......+ .=.|+|+|..++..+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHH
Confidence 2 22233478899999887774 55 489999988887775444222 3359999999888764 999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CC--CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--AD--CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 654 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 654 (670)
.+.+.....-.. ..+.|+..|++++..- .| .-|..=+++. +.......-.......+.+++.. .+|..++-
T Consensus 1293 F~lLh~VP~Ldq--c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~--p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct 1367 (1516)
T KOG1832|consen 1293 FKLLHSVPSLDQ--CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKH--PLFSSFRTFDAIDYSDIATIPVD-RCLLDLCT 1367 (1516)
T ss_pred HHHHhcCccccc--eEEEeccCccchhhhhhhhhhhhhhccccccc--chhhhhccccccccccceeeecc-cchhhhhc
Confidence 888766543332 4678888887655432 00 0011111111 00000000111122345555443 46777787
Q ss_pred ecCCcEEEEee
Q 005913 655 SRRNLLFAAGA 665 (670)
Q Consensus 655 s~~~~~La~gs 665 (670)
+|...+|++--
T Consensus 1368 ~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1368 EPTDSFLGVIE 1378 (1516)
T ss_pred CCccceEEEEe
Confidence 88777777643
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=8.5e-08 Score=103.88 Aligned_cols=237 Identities=18% Similarity=0.131 Sum_probs=177.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
-.++.|+|.| ++|.| ..+.|.+-|... .+.+..+.-|...|+.+.|.|-.
T Consensus 18 ~~A~Dw~~~G-LiAyg-shslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYG-SHSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP 67 (1062)
T ss_pred ccccccCccc-eEEEe-cCceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence 6788899876 67777 455677777553 23445566788999999998731
Q ss_pred ------------CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec---CC-CEEEEEECCCcEEEEECCCCce
Q 005913 434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 434 ------------~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp---~g-~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
-.|+++...|.|.+||......+..+..|..++.+++|-+ +. ..++.-....++.+|+.++|+.
T Consensus 68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 2467778889999999999988888999999999999987 33 4566666778999999999999
Q ss_pred eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-------CCcEEEEEecCCC------------C--------
Q 005913 498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS------------M-------- 549 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~------------~-------- 549 (670)
+...........|+.+.| +.+.+..-+..|.+.+.+.- .|+.+++-..|.. .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 888776667778899988 55666666677877777653 2344443333322 0
Q ss_pred -----eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 005913 550 -----ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 550 -----I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~--~l~sgs~Dg~I~iwd~~~ 620 (670)
.-.++|+|.-+.++.......+.++|+.-..++....-..+.+.-+.|-|+++ .|+++-.||.+.||--+.
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 11357788777666666778899999998888888776677777778877654 799999999999997655
No 288
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=1.8e-06 Score=90.07 Aligned_cols=217 Identities=14% Similarity=0.148 Sum_probs=135.6
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEeCCCCceeEEeeCCC-------ccEeEEEEecCCCEEEEEE-C-CCcEEE
Q 005913 429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGHN-------YPVWDVQFNPQGHYFASSS-H-DRTARI 489 (670)
Q Consensus 429 ~sp~~~~L~s~s~----------Dg~I~lwd~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s-~-dg~v~l 489 (670)
+|||++.|+++.. +..|.+||+.+.+.+..+.... ..-..++++|+|+++++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998876655 7899999999999887776422 2234789999999988776 3 689999
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEE----EEEecCCCCeE-EEEEcC-CCCEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECV----RIFIGHRSMIL-SLAMSP-DGRYM 562 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~----~~~~~h~~~I~-~l~~sp-~g~~l 562 (670)
+|+.+++.+..+.-.. ...-+..+.+.+++. +.||......+.+ |+.. ..|.+...++. .-.|++ +|+++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888776422 222222222322222 2345444433322 2211 11111011110 014455 88888
Q ss_pred EEEECCCeEEEEeCCCC-----eeeEEeeC-------CCcceEEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 005913 563 ASGDEDGTIMMWDLASG-----RCVTPLMG-------HTSCVWTLAYSCEGSLLASGS----------ADCTVKLWDVTT 620 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~-----~~~~~~~~-------h~~~V~sl~~s~~g~~l~sgs----------~Dg~I~iwd~~~ 620 (670)
+.... |.|.+.|+... .....+.. ..+.+.-++++++++.++... ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77776 99999996443 22222211 223444599999999888743 124799999887
Q ss_pred CccccccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEee
Q 005913 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA 665 (670)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs 665 (670)
.+. +..+.. ...+..++|+||++ +|.+..
T Consensus 289 ~kv---------------i~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 289 GKR---------------LRKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred CeE---------------EEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 654 333333 34799999999999 776555
No 289
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.94 E-value=5.8e-07 Score=96.82 Aligned_cols=182 Identities=14% Similarity=0.047 Sum_probs=121.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe-----EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-----DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS- 506 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-----~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~- 506 (670)
+..++.++.+|.|+.||..+++.+..+......+. +... .+..++.+..++.+..+|..+++.+........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 45677778899999999999988766654322111 1111 234677888889999999998877654321100
Q ss_pred ---C------e-eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 507 ---D------V-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 507 ---~------v-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
. + .+..+ .+..+++++.+|.++.||..+|+.+..... . ...... ..+..++.++.+|.|..+|.
T Consensus 223 g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 223 GRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEEC
Confidence 0 0 11111 356788888999999999999988766542 1 112222 24678888889999999999
Q ss_pred CCCeeeEEeeCCCc-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 577 ASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 577 ~~~~~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+|+.+........ ...+... .+..|++++.+|.|+++|..+++..
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 99987765532211 2222222 4668999999999999998887643
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=1.7e-08 Score=98.46 Aligned_cols=247 Identities=16% Similarity=0.289 Sum_probs=157.1
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeeCCC------------ccEeEEEEecCC--CEEEE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHN------------YPVWDVQFNPQG--HYFAS 480 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~------------~~V~~l~~sp~g--~~l~s 480 (670)
....|+++.|...|.+|++|...|.|.+|.-..... ...+++|. ..|..+.|..++ ..|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346789999999999999999999999997653321 22355554 347788887754 35778
Q ss_pred EECCCcEEEEECCCCc------------------------------------------eeEEe-cccCCCeeEEEEcCCC
Q 005913 481 SSHDRTARIWSMDRIQ------------------------------------------PLRIM-AGHLSDVDCVRWHINC 517 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~------------------------------------------~~~~~-~~~~~~v~~v~~~p~~ 517 (670)
.+.|++|++|.+.... +.+.. ..|...++++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999874210 11222 3566678889998888
Q ss_pred CEEEEEEcCCcEEEEECCCCc-E--EEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCee------e
Q 005913 518 NYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------V 582 (670)
Q Consensus 518 ~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-----~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~------~ 582 (670)
..++++ .|=.|.+|++.-.. + +.-+..|. .-|++..|+|. ...+.-.+..|.|++-|++.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777766 57789999886322 2 22233343 34888999995 44566677889999999984321 1
Q ss_pred EE----------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEE
Q 005913 583 TP----------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYS 651 (670)
Q Consensus 583 ~~----------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~ 651 (670)
.. +.+-...|..+.|+++|+++++-+. -+|+|||+...........-....+..+-..+... --.-+.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1122356888999999999887654 48999999886643322110000000000011100 011245
Q ss_pred EEEecCCcEEEEeeCCC
Q 005913 652 LQFSRRNLLFAAGALSK 668 (670)
Q Consensus 652 l~fs~~~~~La~gs~dg 668 (670)
+.||.+...+.+|++..
T Consensus 343 isfSgd~~~v~sgsy~N 359 (460)
T COG5170 343 ISFSGDDKHVLSGSYSN 359 (460)
T ss_pred EEecCCccccccccccc
Confidence 67787777777777654
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=2.7e-06 Score=85.76 Aligned_cols=215 Identities=15% Similarity=0.132 Sum_probs=141.0
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 426 ~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
++.|.+ ++.++++-...+.|+.|+..++.... +.... ...+.+. +++ .++.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 567888 66666777778999999998765543 33222 6677777 565 55555554 456669888755444432
Q ss_pred -----cCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 005913 504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG 569 (670)
Q Consensus 504 -----~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~-sg~~dg 569 (670)
.....+.+++.|+|++.++.... |.|..++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567899999999977775543 568888877 55444433 345678999999999776 556788
Q ss_pred eEEEEeCCCCee-------eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 570 TIMMWDLASGRC-------VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 570 ~I~iwDl~~~~~-------~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
.|..+|+..... +..+....+..-.+++..+|++.++....+.|.+++-. +.. +..+
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~---------------~~~i 220 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL---------------LREI 220 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE---------------EEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE---------------EEEE
Confidence 899999863221 12222222347889999999999988889999999976 332 2222
Q ss_pred CCCCCCeEEEEEe-cCCcEEEE
Q 005913 643 PTKSTPVYSLQFS-RRNLLFAA 663 (670)
Q Consensus 643 ~~~~~~V~~l~fs-~~~~~La~ 663 (670)
......+++++|. ++...|.+
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEE
T ss_pred cCCCCCEEEEEEECCCCCEEEE
Confidence 2223378999995 55444433
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=7.7e-07 Score=106.77 Aligned_cols=239 Identities=16% Similarity=0.171 Sum_probs=151.4
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeC--C------------CccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913 425 YSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKG--H------------NYPVWDVQFNPQGHYFASSS-HDRTAR 488 (670)
Q Consensus 425 ~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h------------~~~V~~l~~sp~g~~l~s~s-~dg~v~ 488 (670)
..+++++. +..+++-+.++.|++||... ..+..+.+ . -.....+++.+++..|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55667777888999999864 43333322 1 11247899999887666654 457899
Q ss_pred EEECCCCceeEEeccc-----------------CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecC----
Q 005913 489 IWSMDRIQPLRIMAGH-----------------LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGH---- 546 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~-----------------~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---- 546 (670)
.+|+.++. +..+.+. ......++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 3333211 12346799999 5666677777899999999877543 22211
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCeeeEEee-------------CC--------CcceE
Q 005913 547 -----------RSMILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCVTPLM-------------GH--------TSCVW 593 (670)
Q Consensus 547 -----------~~~I~~l~~sp~g~~l~-sg~~dg~I~iwDl~~~~~~~~~~-------------~h--------~~~V~ 593 (670)
-.....|+++|+|..|+ +-+.++.|++||+.++....... .+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555 55567999999998765321110 00 11245
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+++++++|+++++-+.+++|++||..++........ +.....--......-.....++++++|.++++-+.++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 889999999999999999999999877543211110 0000000001122233567899999999888766554
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.4e-08 Score=101.04 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=116.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
+..+..++.+++||++..+....++++...... .+..... .-...-+++.|..+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~-~v~~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVS-CVPKRPTAISFIRED 119 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEe-ecccCcceeeeeecc
Confidence 445567888999999988888888887642210 0111111 112233445555545
Q ss_pred CEEEEE---eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cccCCCee
Q 005913 434 DFILSS---SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLSDVD 509 (670)
Q Consensus 434 ~~L~s~---s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~~~~~~v~ 509 (670)
.....+ +....+.+|+... .+....-||-..+.+++|+||+++++++..|..|++-.......+..+ .||..-|.
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceEEEEeecCCceeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 544433 4455666666665 344556689999999999999999999999999999888766666554 47999999
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (670)
.++.-++. .|++|+.|++|++||+++|+++..+.
T Consensus 199 ~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 199 TISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 99987654 58999999999999999999886653
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.1e-09 Score=103.59 Aligned_cols=153 Identities=19% Similarity=0.305 Sum_probs=120.0
Q ss_pred eEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----cE
Q 005913 467 WDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----EC 539 (670)
Q Consensus 467 ~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----~~ 539 (670)
|.++|+- .|.. ++.+.+..|-+-+++++... .|. ..++|.++.|+..++.++.|+.+|.|..+|++.+ .+
T Consensus 215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 3345554 3444 55666778999999887443 333 6689999999999999999999999999999865 34
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCee---eEEeeCCCcceEEE--EEcCCCCEEEEEECCCcE
Q 005913 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVWTL--AYSCEGSLLASGSADCTV 613 (670)
Q Consensus 540 ~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~---~~~~~~h~~~V~sl--~~s~~g~~l~sgs~Dg~I 613 (670)
...+ -|...|+++..-. ++++|++.+.+|.|.+||++.-++ +.++.+|...-.-+ -..+....++++|.|...
T Consensus 292 a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 292 AQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred eEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 4444 4888999988776 788999999999999999997777 88888987543333 345667789999999999
Q ss_pred EEEeCCCCcc
Q 005913 614 KLWDVTTSTK 623 (670)
Q Consensus 614 ~iwd~~~~~~ 623 (670)
|||.++.+..
T Consensus 371 RiWsl~~ghL 380 (425)
T KOG2695|consen 371 RIWSLDSGHL 380 (425)
T ss_pred EEEecccCce
Confidence 9999998754
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=2.1e-08 Score=101.48 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=114.1
Q ss_pred cEeEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCC
Q 005913 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSG 537 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~ 537 (670)
..+.+..++.++++|++..+....++++..... ..... -...-+++.|..+...+..+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566777888888888888777777654332 11111 112234455555555555544444 4555555444
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
.+. .+.||-..++.++|+||+++|+++..|+.|++-....-..+..+- ||+..|..++.-++ ..|++||.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 444 456899999999999999999999999999998887766666554 79999999998754 569999999999999
Q ss_pred eCCCCcccccc
Q 005913 617 DVTTSTKVLKT 627 (670)
Q Consensus 617 d~~~~~~~~~~ 627 (670)
|+.++..+...
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99998876433
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.6e-06 Score=94.33 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=143.1
Q ss_pred ecCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913 348 INTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d------------~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (670)
-.|...|+.+.|.|- .-+||++...|.|.+||.... ....
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----------------------------s~~~ 103 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----------------------------SVIN 103 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----------------------------hhhh
Confidence 345577999999862 235788888999999998641 2233
Q ss_pred eeecCccCEEEEEEcCC---C-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEE
Q 005913 416 LYQGHSGPVYSASFSPL---G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW 490 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~---~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lw 490 (670)
.+..|..+|..++|-+. . ..|++-....+|.+|+..+|+....+........|+.+.| +.+.|..-+..|.+.+.
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 45667889999999763 3 4566767778999999999999988887667788899999 66777777777888877
Q ss_pred ECCC-------CceeEEecccCC------------C-------------eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q 005913 491 SMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538 (670)
Q Consensus 491 d~~~-------~~~~~~~~~~~~------------~-------------v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~ 538 (670)
+.-. ++..++-..|.. . ...++|+|.-+.++...-.+.+.++|++-..
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 6532 223333333322 0 1124667776666666678889999999888
Q ss_pred EEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeC
Q 005913 539 CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDL 576 (670)
Q Consensus 539 ~~~~~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl 576 (670)
++....-..+.+.-+.+-|+++ .|+++..||.+.+|-.
T Consensus 264 ~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 264 CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 8877766666666666766554 6888888888888853
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=4.9e-08 Score=93.36 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=113.0
Q ss_pred cCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccc
Q 005913 334 LSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS 413 (670)
Q Consensus 334 l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (670)
+|......-++.++..+.+.-.|-+.+--++.+++|..||.+.+++...... ...
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~--~~~----------------------- 126 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA--LMS----------------------- 126 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh--hhh-----------------------
Confidence 4444444445555555555555666666688899999999999999764110 000
Q ss_pred eeeeecCccCEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcE
Q 005913 414 YTLYQGHSGPVYSASFSPLGDFILSSS-----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA 487 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s-----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v 487 (670)
+.-..|.+. .+.+....++++.++. .-+..+.|+++..+....-+.....|.+++-+| ..+.+++|+.||.+
T Consensus 127 -~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~ 204 (319)
T KOG4714|consen 127 -RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIV 204 (319)
T ss_pred -hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeE
Confidence 000011111 1122223344444432 223466777765443332222233488999999 45667888899999
Q ss_pred EEEECCCCc-eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC
Q 005913 488 RIWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS 536 (670)
Q Consensus 488 ~lwd~~~~~-~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~ 536 (670)
-+||.++.. +...+..|..++..+-||| ++..|++++.||.+..||..+
T Consensus 205 ~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 205 GLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999998764 4456678999999999998 567899999999999999765
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=2.4e-06 Score=85.49 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=127.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cccCC---C
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D 507 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~~~~~---~ 507 (670)
++..+++++.++.|+.||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 467788888999999999999998877765 22222222 224556777778889999999999998874 32211 1
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
.........++.++++..++.|..+|+++|+.+......... +.+-....++ .++.++.+|.+..+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 122233334888999989999999999999998887664422 1122222344 77777777864444999
Q ss_pred CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+++.+.... ...+..+ ...++..|+.++.++.|.+||+.+++..
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999664332 2233332 3457778888889999999999998653
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=4.3e-08 Score=105.46 Aligned_cols=202 Identities=25% Similarity=0.365 Sum_probs=150.3
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEecCC--CEEEEEECCCcEEEEECCC--
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQG--HYFASSSHDRTARIWSMDR-- 494 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~g--~~l~s~s~dg~v~lwd~~~-- 494 (670)
.+++..+..+|.|+-++.++.-| +.+.|+...-..-.+-.| .-.|-++.|+|.. .+-++........+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788899999999999998877 667777654332222223 3346778888843 3455555556778898753
Q ss_pred -CceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 495 -IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 495 -~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
......+.+|...|+.+.|+|.. ..+++++.|-.+..||+++.. ++..+..-...-+.++|+-....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 23345567999999999999865 478889999999999999754 455555555667889998855555555666789
Q ss_pred EEEeCCCC-eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913 572 MMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 572 ~iwDl~~~-~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
++||++.| .++..+++|...|+++.|.. ....+.+++.||+|++||......
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 99999976 57788889999999999875 345688999999999999987654
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=4.2e-09 Score=114.94 Aligned_cols=197 Identities=16% Similarity=0.236 Sum_probs=151.5
Q ss_pred ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEE
Q 005913 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TAR 488 (670)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~ 488 (670)
.+.++.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|+.+|+-+.-+.+|...++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345667788999999999999999999999999999999999999999999999999999999999877765433 467
Q ss_pred EEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ec---CCCCeEEEEEcCCCCEEE
Q 005913 489 IWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 489 lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~---h~~~I~~l~~sp~g~~l~ 563 (670)
+|++.. +.+...|. .-.|+.|+.....-+.|+......+||++++..+.++ .+ ....-.+..|||+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 898754 44444444 3467888876666666777778999999999877663 22 122336788999988776
Q ss_pred EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
.|| .+||.+..+.+..|...+.. -.-.|+|+|..++.-+. |||+.+..
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHH
Confidence 455 58999988777776544422 12369999998888764 99998753
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=5.9e-07 Score=86.39 Aligned_cols=202 Identities=16% Similarity=0.114 Sum_probs=131.7
Q ss_pred CCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEec-----CCCEEEEEECCCcEEEEECCCCce-eEEecccCCCeeEEE
Q 005913 441 ADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVR 512 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~~~~~~v~~v~ 512 (670)
....|-+|++-+.. .+..+.+ +.|.| ...+|+.||..|...+|...+.+. ......|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34457777766544 3333332 44444 456899999999999999885443 233334444333221
Q ss_pred E-cCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEE-e-eCC
Q 005913 513 W-HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTP-L-MGH 588 (670)
Q Consensus 513 ~-~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~-~-~~h 588 (670)
- .-..--+..++.|.++++.++.-+..-.......-.+.++++++|++++++.+....|..|.+... ..+.. . ...
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1 112234666778888888887654333222211123788999999999999999999999988643 22222 2 223
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
+..-.+.+|+.....+|++..||++.|||++....+.. ..-.+-+.|.+.|..+.|++-|.
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCc
Confidence 34457889999999999999999999999987543221 12234567889999999998663
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.75 E-value=1.4e-06 Score=93.76 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=118.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
..++.++.+|.+..+|..+++.+........ ....+.-+| .+..+++++.+|.++.||..+++.+......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~ 270 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS 270 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence 4677788889999999988876544321100 000111111 3557888889999999999999877655421
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
...... ..+..+++++.+|.++.+|..+|+.+........ ...+... .+..|++++.+|.|+++|..+|+.+.
T Consensus 271 --~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 271 --SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 112222 3567888888999999999999988765532211 2222222 36789999999999999999999998
Q ss_pred EeeCCCcceEE-EEEcCCCCEEEEEECCCcEEEE
Q 005913 584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 584 ~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~iw 616 (670)
++..+...+.+ ..+. + +.|+.++.||.|..|
T Consensus 345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88766644332 2332 3 458889999999876
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=1.1e-07 Score=91.00 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=119.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
|+.+.++.+ ..|+++..++.+......++. ...++..|..+-.+-..+-.+..+++++.||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555566532 345555555544443332221 2233333444433334444567899999999999999
Q ss_pred CCCCcee-EEec-ccCCCeeEEEEcCCCCEEEEEE-----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913 492 MDRIQPL-RIMA-GHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMA 563 (670)
Q Consensus 492 ~~~~~~~-~~~~-~~~~~v~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~ 563 (670)
.+.-..+ +.+. .|.+ -.+.+....++.+.++. .-+..+.|+++..+....-......|++++-+|. ...++
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752111 1111 1211 12222333455555543 2234566666654433222222344999999995 45677
Q ss_pred EEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 005913 564 SGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+|+.||.+.+||.+... +...+..|..+|+.+-|+| ++..|++++.||.+.-||-.+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 88899999999999874 3345678999999999999 677999999999999999875
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.4e-07 Score=100.19 Aligned_cols=182 Identities=16% Similarity=0.206 Sum_probs=136.6
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
...++|++++ +++|+-|+.+|.|++++.... . .....|... .-+|.|+++|+.||+|.|-.+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567777777 789999999999999998743 2 333334433 55899999999999999999988877766
Q ss_pred ecccCCCeeEEEEcCC-----CCEEEEEEcCCcEEEEECC---CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 501 MAGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~-----~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
+. ...++.+++++|+ ++.+++|+.-| +.++.-+ ....+ ......|+|.++.|. |.++|-++.+| |+
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 65 3478999999997 57899999888 8777643 22222 455667899999997 88999998887 89
Q ss_pred EEeCCCCeeeEEeeCCCcc------eEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 573 MWDLASGRCVTPLMGHTSC------VWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+||+.+++.+..+...... -..+.|.++.+ |+.| ...+|+|..+..
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 9999999888777643332 34578887655 4444 334789988873
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=2.6e-05 Score=78.78 Aligned_cols=227 Identities=16% Similarity=0.164 Sum_probs=153.2
Q ss_pred EEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 354 LNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 354 V~~l~fs~-d~~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
...++.+| ++..+|.+-.-|. ..+||..+........ ...-+.+.|| -.||+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGH------g~fs~ 60 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGH------GVFSP 60 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecC------EEEcC
Confidence 44677788 5666777766666 6678877543222111 1123456677 37999
Q ss_pred CCCEEEEEe-----CCCeEEEEeCC-CCceeEEeeCCCccEeEEEEecCCCEEEEEE------------------CCCcE
Q 005913 432 LGDFILSSS-----ADTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSS------------------HDRTA 487 (670)
Q Consensus 432 ~~~~L~s~s-----~Dg~I~lwd~~-~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s------------------~dg~v 487 (670)
||++|++.- ..|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++- .+.++
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 999999864 35889999999 6677888888877778899999998888763 13456
Q ss_pred EEEECCCCceeEE--e--cccCCCeeEEEEcCCCCEEEEEEcCC-------cEEEEECCCCcEEEEEe-------cCCCC
Q 005913 488 RIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI-------GHRSM 549 (670)
Q Consensus 488 ~lwd~~~~~~~~~--~--~~~~~~v~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~-------~h~~~ 549 (670)
...|..+++.+.. + ..|...|..+++.++|..++..-..| -|.+++. +..+..+. .-.+.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCc
Confidence 6667777777665 3 23777899999999987766654433 2344432 33233222 23467
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913 550 ILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~ 612 (670)
+-+|+++++|.++++.+ .-|.+.+||..+++.+....-. .+..++-.+++ +++|.+ .|.
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence 89999999998776555 6678999999999988765432 35566666666 555544 444
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9e-07 Score=96.94 Aligned_cols=180 Identities=14% Similarity=0.257 Sum_probs=131.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..++|++++ +++||-|+.+|.|++++.+.. . .....|+.. ..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~ 81 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL 81 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence 457888887 679999999999999997641 1 222234333 56
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-----CCEEEEEECCCcEEEEECC---CCceeEEecc
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG 503 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~l~s~s~dg~v~lwd~~---~~~~~~~~~~ 503 (670)
+|.+++|||.||+|.|-.+-+.+....+. ...++.+++++|+ ...|++||.-| +.++.-+ +...+ ....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 79999999999999999999888877766 4568999999997 56799999888 7776532 22222 3455
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC------eEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~------I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
..++|.++.| .|+++|-++.+| |++||+.+++.+..+...... -..+.|.++.+ |+.| ...+|+|..++
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 6688999999 578999887776 899999998887766543332 23567776654 4444 44568888887
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=93.33 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=125.6
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-----ceeEE
Q 005913 428 SFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRI 500 (670)
Q Consensus 428 ~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-----~~~~~ 500 (670)
+|+-+ +-. ++.+.+-.|-+-++.++-.. .+. ..+.|.++.|...+..++.|+.+|.|..+|++.. .+...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56532 223 45556677888898876322 222 4667889999998999999999999999999754 34444
Q ss_pred ecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEE--EEEcCCCCEEEEEECCCeEEEE
Q 005913 501 MAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~--l~~sp~g~~l~sg~~dg~I~iw 574 (670)
+. |.+.|+|+..-. ++.+|++.+.+|+|.+||++.-++ ++.+.+|...-.- +.+.+....++++++|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 43 889999998776 788999999999999999997766 8999998654332 3345667789999999999999
Q ss_pred eCCCCeeeEEeeCCC----cceEEEEEc
Q 005913 575 DLASGRCVTPLMGHT----SCVWTLAYS 598 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~----~~V~sl~~s 598 (670)
.++.|..+.++.... ..+++++|.
T Consensus 374 sl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ecccCceeeccCCCCccccccccceehh
Confidence 999999998876432 234555553
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=7.3e-05 Score=75.56 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=140.7
Q ss_pred EEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEE-----CCCcEEEEECC-
Q 005913 424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSS-----HDRTARIWSMD- 493 (670)
Q Consensus 424 V~~l~~sp-~~~~L~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s-----~dg~v~lwd~~- 493 (670)
...++.+| ....++.+-.-|+ ..+||..+++....+......- -.-.||++|++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4456667766665 6679999888776654322211 1357999999999874 35899999998
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEE------------------cCCcEEEEECCCCcEEEEEe----cCCCCeE
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGS------------------SDKTVRLWDVSSGECVRIFI----GHRSMIL 551 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs------------------~dg~I~iwd~~~~~~~~~~~----~h~~~I~ 551 (670)
+.+.+..+..|.-....+.+.|+|..|+++. .+.++...|..+|+.+.... .|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 6677778887777777888999998877753 23457778888998877643 3777899
Q ss_pred EEEEcCCCCEEEEEECCCe-------EEEEeCCCCeeeEEee-------CCCcceEEEEEcCCCCEEEEE-ECCCcEEEE
Q 005913 552 SLAMSPDGRYMASGDEDGT-------IMMWDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASG-SADCTVKLW 616 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~dg~-------I~iwDl~~~~~~~~~~-------~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iw 616 (670)
.+++.++|..++..-..|. |-+++... .+..+. ...+.|-++++++++.++++. -.-|.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999988777655442 44444332 222222 234678899999999877554 467899999
Q ss_pred eCCCCcc
Q 005913 617 DVTTSTK 623 (670)
Q Consensus 617 d~~~~~~ 623 (670)
|..++..
T Consensus 245 d~~tg~~ 251 (305)
T PF07433_consen 245 DAATGRL 251 (305)
T ss_pred ECCCCCE
Confidence 9988754
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=7.8e-06 Score=93.52 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=149.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
..+.|.++.|..++.-++.++..|.|.+-|..+.. ......-.+.|.+++|
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aasw 117 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAASW 117 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEee
Confidence 34579999999999999999999999998765421 1112224578999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeC----CCCce-------------------eEEeeCCC---------------------cc
Q 005913 430 SPLGDFILSSSADTTIRLWST----KLNAN-------------------LVCYKGHN---------------------YP 465 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~----~~~~~-------------------~~~~~~h~---------------------~~ 465 (670)
|||...++..+..+++.+-.- -..+. -..++|.. ..
T Consensus 118 S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 118 SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC
Confidence 999999999888888776432 11111 11222111 11
Q ss_pred EeEEEEecCCCEEEEEE----CC-CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCC
Q 005913 466 VWDVQFNPQGHYFASSS----HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSG 537 (670)
Q Consensus 466 V~~l~~sp~g~~l~s~s----~d-g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~ 537 (670)
=.+|.|--||.+||+.. .+ +.+++||-+ +..-..-....+.-.+++|-|.|..+++-. +|+.|.++.- +|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NG 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NG 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CC
Confidence 13489999999999843 33 899999987 332222222334456899999999999854 4567888874 33
Q ss_pred cEEE----EEecCCCCeEEEEEcCCCCEEEE---EECCCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCC-CEEEEE
Q 005913 538 ECVR----IFIGHRSMILSLAMSPDGRYMAS---GDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG-SLLASG 607 (670)
Q Consensus 538 ~~~~----~~~~h~~~I~~l~~sp~g~~l~s---g~~dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g-~~l~sg 607 (670)
-.-. .+.....++..++|+.++..|++ ......|++|-+.+..- -..+....... +.|+|.- ..|..-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVL 353 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEE
Confidence 2222 22223345899999999999998 55555699999876432 12222222222 6677632 233333
Q ss_pred ECCCcEEEEeC
Q 005913 608 SADCTVKLWDV 618 (670)
Q Consensus 608 s~Dg~I~iwd~ 618 (670)
..+|...++++
T Consensus 354 ~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 354 RESGQRLVRDF 364 (1265)
T ss_pred ecCCcEEEEEE
Confidence 35555555544
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=1.3e-05 Score=78.67 Aligned_cols=199 Identities=14% Similarity=0.170 Sum_probs=113.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC-
Q 005913 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG- 433 (670)
Q Consensus 355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~- 433 (670)
.-++||||+.+||.+.+.|+|++||+.+.......... .....-..+|.++.|.+..
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~----------------------~~~~d~~~Aiagl~Fl~~~~ 104 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM----------------------SFPGDLSDAIAGLIFLEYKK 104 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc----------------------ccCCccccceeeeEeecccc
Confidence 45789999999999999999999998752221111000 0000123556666664422
Q ss_pred -----CEEEEEeCCCeEEEEeCCC-----CceeEEe--eC-CCccEeEEEEecCCCEEEEEECCCc-----------EEE
Q 005913 434 -----DFILSSSADTTIRLWSTKL-----NANLVCY--KG-HNYPVWDVQFNPQGHYFASSSHDRT-----------ARI 489 (670)
Q Consensus 434 -----~~L~s~s~Dg~I~lwd~~~-----~~~~~~~--~~-h~~~V~~l~~sp~g~~l~s~s~dg~-----------v~l 489 (670)
..|++-..+|.++=|-+.. .+....+ .. +...|.++.|+|..+.|++||.... +..
T Consensus 105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 105 SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence 2455666677777665432 1222232 22 3668999999999888888764322 222
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
|.+-++.|-..... .-+...-.... +-.+|.+-+.+...........|..|..||||..||+...+|
T Consensus 185 WRiL~~~Pyyk~v~----------~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG 251 (282)
T PF15492_consen 185 WRILSDSPYYKQVT----------SSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG 251 (282)
T ss_pred EEEcCCCCcEEEcc----------ccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence 32222221111000 00000000111 112333332222222223456799999999999999999999
Q ss_pred eEEEEeCCCCeeeEEeeCC
Q 005913 570 TIMMWDLASGRCVTPLMGH 588 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h 588 (670)
.|.+|++.+-++...+..+
T Consensus 252 ~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 252 SLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eEEEEecCcchhhcccchh
Confidence 9999999987777665433
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8e-07 Score=91.13 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=172.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
|...|+.+..+ -.+++.+++-||.++.|.-.... ....+..+..|.+.|.+++.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-------------------------GvEfVKhFraHL~~I~sl~~ 61 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-------------------------GVEFVKHFRAHLGVILSLAV 61 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-------------------------ceeehhhhHHHHHHHHhhhc
Confidence 44455555443 57899999999999999754200 01234446678899999999
Q ss_pred cCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCC---CEEEEE-ECCCcEEEEECCCCc--eeEEe
Q 005913 430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQG---HYFASS-SHDRTARIWSMDRIQ--PLRIM 501 (670)
Q Consensus 430 sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g---~~l~s~-s~dg~v~lwd~~~~~--~~~~~ 501 (670)
+-++..+.|.+. |..++++|+.....+..++...-|= .+.|. ..| ..++++ -.++.+.++|-.... ....-
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 999999999777 9999999998766553333222111 12222 222 123333 367889999975433 23333
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEE---------EEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECV---------RIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~---------~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
.-|.++|.++.+.|.+..+++....|.|.-|.... .+.. ..+........++.|+|+|..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 46999999999999999999999999999998762 1111 11122345678999999999999999
Q ss_pred CCCeEEEEeCCCCeeeEEee--------------------------------CCC-cceEEEEEcCCCCEEEEEECCCcE
Q 005913 567 EDGTIMMWDLASGRCVTPLM--------------------------------GHT-SCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~--------------------------------~h~-~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
.|..|++++..+|+.+..+. .|. ..-+.+.|...|++|+-|+-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 99999999999887654431 122 2235577888899999887665 8
Q ss_pred EEEeCCCCcccc
Q 005913 614 KLWDVTTSTKVL 625 (670)
Q Consensus 614 ~iwd~~~~~~~~ 625 (670)
+|.++.+++...
T Consensus 300 kvin~~tn~v~r 311 (558)
T KOG0882|consen 300 KVINLDTNTVVR 311 (558)
T ss_pred EEEEeecCeEEE
Confidence 888888876543
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9e-07 Score=90.78 Aligned_cols=247 Identities=14% Similarity=0.164 Sum_probs=169.9
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRI 495 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~ 495 (670)
|...|+.+... -.+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-+|..+.|++. |..++++|+++.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66777766554 467999999999999998653 1234556778999999999999999999887 999999999876
Q ss_pred ceeEEecccCCCeeEEEEc-CCC---CEEEEE-EcCCcEEEEECCCCcE-E-EEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 496 QPLRIMAGHLSDVDCVRWH-INC---NYIATG-SSDKTVRLWDVSSGEC-V-RIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~-p~~---~~l~tg-s~dg~I~iwd~~~~~~-~-~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
..+..+....-+ ..+.|. ..| ..|+++ -.++.|.++|-....+ . ..-.-|..+|.++.++|-+..+++....
T Consensus 87 DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 555433321111 112222 222 134433 3578999999875543 2 2334588999999999999999999999
Q ss_pred CeEEEEeCCC------Ceee---------EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913 569 GTIMMWDLAS------GRCV---------TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633 (670)
Q Consensus 569 g~I~iwDl~~------~~~~---------~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 633 (670)
|.|.-|.... .+.. ..+....+...++.|+|+|..+.+-+.|..|+++++.++......++....
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 1111 112223456789999999999999999999999999998776655432100
Q ss_pred -----ccc------------ccccccC-CCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 634 -----NRL------------RSLKTLP-TKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 634 -----~~~------------~~~~~~~-~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+ ..-+.+. ....+-....|...|.+|..|+.-|
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 000 0001111 2234556788999999888887544
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=2.2e-06 Score=94.90 Aligned_cols=149 Identities=16% Similarity=0.294 Sum_probs=117.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---------CCcEEEEEC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSM 492 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---------dg~v~lwd~ 492 (670)
+.|+-++.+ ++++.+|...|+|.+-|.++.+.+..+..|.+.|.++.. .|+.+++||. |..|.+||+
T Consensus 178 ~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 178 SGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 346666654 889999999999999999999999999999999977655 6889999874 667899999
Q ss_pred CCCceeEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECC---CC-cEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS---SG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~---~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
+..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|.. +. ..+..+......+..+.+|++|..|+.|..
T Consensus 254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 887666555544333 55778885 4578888899999999933 22 123334444556999999999999999999
Q ss_pred CCeEEEEe
Q 005913 568 DGTIMMWD 575 (670)
Q Consensus 568 dg~I~iwD 575 (670)
+|.|.+|-
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999997
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=2.8e-06 Score=94.08 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=137.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
+..++.|+-...+..+|+++.+......-....|.-+. .+++++++|...|+|.+-|.++.+.+..+..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 45566676666788889988777666554444454443 4688999999999999999999999999999999998765
Q ss_pred EcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCC-ee
Q 005913 513 WHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASG-RC 581 (670)
Q Consensus 513 ~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~-~~ 581 (670)
-.||.|++++. |.-|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|..+. .+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 47889998773 567899999987766555545444 45678884 457888888999999994321 22
Q ss_pred ---eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 582 ---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 582 ---~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
+..+....+.+.++++|++|+.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 223333445599999999999999999999999998
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=2.5e-05 Score=86.55 Aligned_cols=206 Identities=10% Similarity=0.082 Sum_probs=137.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEEEEcC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 431 (670)
.|+ +|++.+..+|.|+.+|.|.+.+-.- ...+-++.+... |..+....
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~-----------------------------~~~~~fqa~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNSSF-----------------------------QLIRGFQAYEQSIVQFLYILN 75 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecccc-----------------------------eeeehheecchhhhhHhhccc
Confidence 444 4567889999999999988877431 222445555555 44443333
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCC------cee--EEeeC-----CCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 432 ~~~~L~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
...+|++.+.|+ .|++|+++.- .++ ....+ ...|+.+++.+.+-..+|+|-.+|.|.++.-+
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 346788777665 4899998632 122 11112 35678999999999999999999999998532
Q ss_pred ----CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 494 ----~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
.+...........+|+.+++..++..++.......|.+|.+.... .......|+..+.|-.+++....+++++.
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~- 234 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS- 234 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-
Confidence 333333334456789999999888874444445679999987444 24456778888999999986554555543
Q ss_pred CeEEEEeCCCCeeeEEee-CCCc
Q 005913 569 GTIMMWDLASGRCVTPLM-GHTS 590 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~-~h~~ 590 (670)
..+.+||.....+...+. +|..
T Consensus 235 e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 235 EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred ceEEEEcCCCcceeeeecCCCeE
Confidence 469999987655555555 5554
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=6e-07 Score=62.07 Aligned_cols=39 Identities=46% Similarity=0.962 Sum_probs=36.9
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
|+++..+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.9e-05 Score=84.98 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=130.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCC-----cEEEEECCCC------
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDR-----TARIWSMDRI------ 495 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg-----~v~lwd~~~~------ 495 (670)
+|++.+..++.|+.+|.|.+.+-. .+.+..++.+...+...-|.-++ .++++.+.|+ .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 477888999999999988877643 33446677776663333344343 6777777664 5899998643
Q ss_pred cee---EEec----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEE--CC--CCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWD--VS--SGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 496 ~~~---~~~~----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd--~~--~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
+++ +.+. ....++.+++.|.+-+.+++|-.+|.|..+. +. .|...........+|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 223 2222 1345688999999999999999999999984 21 12222222334578999999999987444
Q ss_pred EECCCeEEEEeCCCCee-eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 565 GDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+..-..|.+|.+....+ ...+..|..++.|.++++....+++++. ..|.+|+....+
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 44456799999873332 4446677788999999876654655553 468999987544
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=1.2e-05 Score=88.26 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=162.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 349 NTHNGLNCASISQDGSLVAGGF----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.....-+-..|+|...++|+++ ..|+|.||--.+. ........ -.+
T Consensus 13 Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGE---------------------------Pqr~Vt~P---~ha 62 (1416)
T KOG3617|consen 13 DSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGE---------------------------PQRDVTYP---VHA 62 (1416)
T ss_pred cccccccccccCCCCceeEEEEecCCCCceEEEEecCCC---------------------------CCcccccc---eeh
Confidence 3333344567889999998875 4678888853321 01111111 235
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR----- 499 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~----- 499 (670)
++++|+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+....+.
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~ 142 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM 142 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh
Confidence 669999988889999999999999998877777777899999999999999999999999999999876211110
Q ss_pred -------------Eec---------------ccCCCeeE-EEE-------------cCCCCEEEEEEcCCcEEEEECCCC
Q 005913 500 -------------IMA---------------GHLSDVDC-VRW-------------HINCNYIATGSSDKTVRLWDVSSG 537 (670)
Q Consensus 500 -------------~~~---------------~~~~~v~~-v~~-------------~p~~~~l~tgs~dg~I~iwd~~~~ 537 (670)
.+. +..+.+.. .-| .|+|..++.++.+|+|+-.|- .|
T Consensus 143 ~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g 221 (1416)
T KOG3617|consen 143 QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NG 221 (1416)
T ss_pred hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CC
Confidence 000 00111110 011 256777888888999888873 45
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CC---------------Ce------------eeE---Ee-
Q 005913 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-AS---------------GR------------CVT---PL- 585 (670)
Q Consensus 538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl-~~---------------~~------------~~~---~~- 585 (670)
++....... +. ..+-|.+...-+.....+-++.++=. .+ |. .+. .+
T Consensus 222 ~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg 299 (1416)
T KOG3617|consen 222 RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG 299 (1416)
T ss_pred cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence 544433211 11 11222221111111111111111110 00 00 000 00
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
......+.+++++..+..|+.|...|.+.+|--....-. ...+...+ .+.......+.|..+.|+|.-.++++-
T Consensus 300 ~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~----g~p~~d~w-~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 300 LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ----GDPTIDVW-TLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred hhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc----CCCCcceE-EecCchhhccceEEEEeccccchhhhh
Confidence 012346899999999999999999999999964332111 00111111 122333445679999999876655543
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=9.4e-07 Score=61.09 Aligned_cols=39 Identities=62% Similarity=1.108 Sum_probs=37.0
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
|+++..+.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999998
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=0.00014 Score=78.22 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=81.3
Q ss_pred eEEEEec-CCCEEEEEE----CCCc----EEEEECCCCceeE--Ee-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q 005913 467 WDVQFNP-QGHYFASSS----HDRT----ARIWSMDRIQPLR--IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534 (670)
Q Consensus 467 ~~l~~sp-~g~~l~s~s----~dg~----v~lwd~~~~~~~~--~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~ 534 (670)
.++.|+- +...+.+.. .+|. -++|++...+..+ .. -...+.|.|++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5677776 444555542 3343 3456665443222 11 146678999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
..+.... ....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 289 ~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 7774433 234456789999999999999999999999998643
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.9e-05 Score=80.34 Aligned_cols=204 Identities=16% Similarity=0.196 Sum_probs=127.2
Q ss_pred eeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEE
Q 005913 414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWS 491 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd 491 (670)
...+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ .++|+++|.-+ .+++..|-..|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 336678889999999999888 6788999999999999999999988888 68999999885 45677788999999999
Q ss_pred CCCCc-------------eeEEec---------------------------------------ccCCCeeEEEEcCCCCE
Q 005913 492 MDRIQ-------------PLRIMA---------------------------------------GHLSDVDCVRWHINCNY 519 (670)
Q Consensus 492 ~~~~~-------------~~~~~~---------------------------------------~~~~~v~~v~~~p~~~~ 519 (670)
++..+ ++..+. +..+...++++++..+.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 97532 111100 00112233344443344
Q ss_pred EEEEEcCC-------cEE-EEECCCCcEEEEEe-cCCC-C------eEEEEEcCCCCEEE-EEECCCeEEEEeCCCCeee
Q 005913 520 IATGSSDK-------TVR-LWDVSSGECVRIFI-GHRS-M------ILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 520 l~tgs~dg-------~I~-iwd~~~~~~~~~~~-~h~~-~------I~~l~~sp~g~~l~-sg~~dg~I~iwDl~~~~~~ 582 (670)
++...... .|- --|-.+|..+...+ ++.+ . -..+.-.++.++++ +|+..+.+.+||..++..+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 44332220 011 11223333332211 1111 0 01122233445554 4566788999999999998
Q ss_pred EEeeCCCcceEEEEEcC-CC-CEEEEEECCCcEEEEeCCC
Q 005913 583 TPLMGHTSCVWTLAYSC-EG-SLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~-~g-~~l~sgs~Dg~I~iwd~~~ 620 (670)
.++.- +.+|..++... ++ .+|++-. |..++||..++
T Consensus 425 Q~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 88754 36777776543 33 3555554 56788887653
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.37 E-value=0.00021 Score=76.16 Aligned_cols=231 Identities=18% Similarity=0.229 Sum_probs=127.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eeCC----------------CccEeEEEEecCCCEEEEEEC
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGH----------------NYPVWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h----------------~~~V~~l~~sp~g~~l~s~s~ 483 (670)
...+....|||+|+.++... ++.|.+++..++...+. ..+. -..-..+-|||||++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999999886 57899999877643321 1120 012246889999999988643
Q ss_pred C-Cc-----------------------------------EEEEECCCCceeEEe-----cccCCCeeEEEEcCCCCEEEE
Q 005913 484 D-RT-----------------------------------ARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIAT 522 (670)
Q Consensus 484 d-g~-----------------------------------v~lwd~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~l~t 522 (670)
| .. +.++|+.+++....- ......+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 11 334455444432111 122334778899999884544
Q ss_pred EEc--CC---cEEEEECCCCcEEEEEec-CCCCe---EEEEEc-CCCC-EEEEEECCCe--EEEEeCCCCeeeEEeeCCC
Q 005913 523 GSS--DK---TVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHT 589 (670)
Q Consensus 523 gs~--dg---~I~iwd~~~~~~~~~~~~-h~~~I---~~l~~s-p~g~-~l~sg~~dg~--I~iwDl~~~~~~~~~~~h~ 589 (670)
.-. +. .+.++|..++.+...... ..+.| ....|. +++. +|.....+|. |.+++...+. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 332 22 477788887766444432 22222 345554 5554 5555556665 5555665555 34555555
Q ss_pred cceEE-EEEcCCCCEE-EEEECC--CcEEEEeCCCC-ccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 590 SCVWT-LAYSCEGSLL-ASGSAD--CTVKLWDVTTS-TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 590 ~~V~s-l~~s~~g~~l-~sgs~D--g~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
-.|.. +.|+++++.| +++..+ +.-.+|.+... .. . +..+......-..+.|||++++++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-----------~---~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-----------E---PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-----------E---EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-----------C---eEeccCCCCCceEEEECCCCCEEEEE
Confidence 66755 6778876654 455543 34444444332 10 0 11222222222899999999998865
Q ss_pred eCC
Q 005913 665 ALS 667 (670)
Q Consensus 665 s~d 667 (670)
...
T Consensus 346 ~s~ 348 (353)
T PF00930_consen 346 YSG 348 (353)
T ss_dssp EES
T ss_pred EcC
Confidence 543
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.35 E-value=6.8e-05 Score=82.47 Aligned_cols=187 Identities=11% Similarity=0.127 Sum_probs=117.5
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEeeC-CCccEeEEE-------------------EecCCCEEEEEE-CCCcEEE
Q 005913 432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQ-------------------FNPQGHYFASSS-HDRTARI 489 (670)
Q Consensus 432 ~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~-------------------~sp~g~~l~s~s-~dg~v~l 489 (670)
||++|+.-.. ++.|-..+++..++-..+.- ....+..+. ++|+|+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 5778877653 55666667766655433321 111122222 334554432222 3356677
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE----------------------------------------cCCcE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV 529 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs----------------------------------------~dg~I 529 (670)
+|.++.+....+.-. .....++++|+|+++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 787776665554432 2445677788888877765 12457
Q ss_pred EEEECCC----CcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee------------eEEeeCCCcce
Q 005913 530 RLWDVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC------------VTPLMGHTSCV 592 (670)
Q Consensus 530 ~iwd~~~----~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~------------~~~~~~h~~~V 592 (670)
.++|.++ +..+..+..-......+.+||||+++++++ .++.+.|.|+.+.+. +.+..--.+ .
T Consensus 299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-P 377 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-P 377 (635)
T ss_pred EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-c
Confidence 7777776 333333333445677899999999887755 589999999987552 333332223 3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 593 WTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
...+|+++|+.+.|-..|..|..|++..
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4678999999999999999999999986
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.35 E-value=0.00014 Score=78.90 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=117.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecccCC---
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS--- 506 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~--- 506 (670)
+..++.++.+|.+..+|..+++.+-.+......+.. ..-+| .+..++.++.+|.+..+|..+++.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 456677788899999999999887766532111100 00111 233567778889999999998887655431100
Q ss_pred ----CeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 507 ----~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
....+.-+| .+..+++++.+|.+..+|..+|+.+..... +....+.. .+..++.++.+|.+..+|..+|+
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 000111122 355677788899999999999988765432 11112222 46678888899999999999998
Q ss_pred eeEEeeCCCc-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 581 CVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 581 ~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+-....... ...+... .+..|+.++.||.|.+.|..+++..
T Consensus 316 ~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 316 ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 7654322111 1122222 2567888999999999999887643
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.35 E-value=8.4e-05 Score=74.22 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=119.0
Q ss_pred CCeEEEEeCCCCceeEEeeCCCccEeEEE--EecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCE
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 519 (670)
+|+|..||..+++.+....-.. .+.... ..+++.++++++.++.+..||..+++.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999887775311 121222 333566788889999999999999998877764 22222211 235567
Q ss_pred EEEEEcCCcEEEEECCCCcEEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcc----
Q 005913 520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC---- 591 (670)
Q Consensus 520 l~tgs~dg~I~iwd~~~~~~~~~~-~~h~---~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~---- 591 (670)
+++++.++.|+.+|..+|+.+... .... ...........+..++++..+|.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778899999999999998874 3321 11222333334888999999999999999999998877654322
Q ss_pred ------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 592 ------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 592 ------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+.+-....++ .++.++.+|.+..+|+.++..
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE
Confidence 1122222244 777777777544449988764
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=6.6e-05 Score=86.19 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=138.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC----C--
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD----R-- 494 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~----~-- 494 (670)
.+.|.++.|..+...++.+..+|.|.+-|..+..... ...-...|.+++|+||+..++..+..+++.+-+-+ .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999999999999999999999887654322 22245679999999999999999998888775431 0
Q ss_pred -----------------CceeEEeccc---------------------CCCeeEEEEcCCCCEEEEEE-----cCCcEEE
Q 005913 495 -----------------IQPLRIMAGH---------------------LSDVDCVRWHINCNYIATGS-----SDKTVRL 531 (670)
Q Consensus 495 -----------------~~~~~~~~~~---------------------~~~v~~v~~~p~~~~l~tgs-----~dg~I~i 531 (670)
|+....|.|. .+.=..|.|--+|.++++.. ..+.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0111122211 11224589999999999832 3379999
Q ss_pred EECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEeCCCCeeeE----EeeCCCcceEEEEEcCCCCEE
Q 005913 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRCVT----PLMGHTSCVWTLAYSCEGSLL 604 (670)
Q Consensus 532 wd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~---~dg~I~iwDl~~~~~~~----~~~~h~~~V~sl~~s~~g~~l 604 (670)
||-. |..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.- +|-.-. .+......|..++|+.++.+|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence 9976 544333333334456899999999999853 5667999984 443222 222333458999999999999
Q ss_pred EE---EECCCcEEEEeCCCC
Q 005913 605 AS---GSADCTVKLWDVTTS 621 (670)
Q Consensus 605 ~s---gs~Dg~I~iwd~~~~ 621 (670)
++ ......|++|-+.+-
T Consensus 305 Av~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecccccceEEEEEecCe
Confidence 88 445556999988764
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=6.7e-05 Score=80.61 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=95.5
Q ss_pred CCeeEEEEcC-CCCEEEEE----EcCCc----EEEEECCCCcEEEE---EecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 506 SDVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 506 ~~v~~v~~~p-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
....++.|+- +.+.+.+. +.+|. -.+|++..++..+. -......+.|++++|+...|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3345666664 33444442 23343 34566654432211 1246778999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc-cccCCcccccccccCCCCCCeEEE
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE-EKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
||...+... +..+.-.++.++|+|+|.++++|+..|.+.+||+.-..-....- +...+...-.+..+-.+...+..+
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~i 363 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHI 363 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhhee
Confidence 998776433 22344557889999999999999999999999987654332221 111111111223333455566777
Q ss_pred EEecCC
Q 005913 653 QFSRRN 658 (670)
Q Consensus 653 ~fs~~~ 658 (670)
.|++..
T Consensus 364 qW~~~~ 369 (545)
T PF11768_consen 364 QWAPAP 369 (545)
T ss_pred EeccCC
Confidence 777443
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.00031 Score=75.24 Aligned_cols=264 Identities=12% Similarity=0.107 Sum_probs=143.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCC----------CCCCCcccc---CCC--CCccceeee
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------DTTPREDII---GPN--GRKRSYTLY 417 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~----------~~~~~~~~~---~~~--~~~~~~~~~ 417 (670)
.|+++.|+++..-||+|...|.|.||.+...+...........+ ....-.++. .+. ........+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999999999999999999999886532211000000000 000000010 011 112344555
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eC------CCccEeEEEEec-----CC---CEEEEE
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS 481 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~l~~sp-----~g---~~l~s~ 481 (670)
....++|++++.| +=-+++.|..+|++.|.|++....+..- .. ....|+++.|+. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 6668999999998 5569999999999999999866655441 11 234678888874 33 468889
Q ss_pred ECCCcEEEEECC-C--Cc----eeEEecccCCCeeEEE-EcCC-C-------------------CEEEEEEcCCcEEEEE
Q 005913 482 SHDRTARIWSMD-R--IQ----PLRIMAGHLSDVDCVR-WHIN-C-------------------NYIATGSSDKTVRLWD 533 (670)
Q Consensus 482 s~dg~v~lwd~~-~--~~----~~~~~~~~~~~v~~v~-~~p~-~-------------------~~l~tgs~dg~I~iwd 533 (670)
...|.+.+|.+. . +. .......+.+.|..+. ++.+ | +-+++...+..+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 11 1111223445555443 3211 1 2244445678899999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC----cceEEEEEcCCCCEE
Q 005913 534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLL 604 (670)
Q Consensus 534 ~~~~~~~~~~~~h~~~I~~l~~s-----p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~----~~V~sl~~s~~g~~l 604 (670)
.-+.+.........-....+.+- ..+..|++-..+|.|+++.+..-+.+..+.-+. ..+...+++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887766554222223334442 357788889999999999999988887776432 345567789999977
Q ss_pred EEEECCCcEEEEeC
Q 005913 605 ASGSADCTVKLWDV 618 (670)
Q Consensus 605 ~sgs~Dg~I~iwd~ 618 (670)
+-.+.. .+.++.+
T Consensus 322 ~~~gps-E~~l~sv 334 (395)
T PF08596_consen 322 YWTGPS-EIQLFSV 334 (395)
T ss_dssp EE-SSS-EEEEEEE
T ss_pred EEeCcc-cEEEEEE
Confidence 766543 3444443
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.18 E-value=0.00045 Score=74.88 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=114.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
..++.++.+|.+..+|..+++.+..+..... ....+.-+| .+..+++++.+|.+..+|..+++.+.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~- 284 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY- 284 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence 3566677788898888888776544321100 011111222 345677788899999999999987755431
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
.....+. ..+..+++++.+|.+..+|..+|+.+.....-. ....+..+ .+..|+.++.+|.|.+.|..+|+.+.
T Consensus 285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 1111222 246678888899999999999998765443211 11222222 25678889999999999999999887
Q ss_pred EeeCCCcceEE-EEEcCCCCEEEEEECCCcEEEEeC
Q 005913 584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 584 ~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
+..-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 360 ~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 360 QQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 77544333332 222 2457888899999988764
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=1.1e-06 Score=93.94 Aligned_cols=197 Identities=20% Similarity=0.365 Sum_probs=134.5
Q ss_pred cCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 005913 422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM 492 (670)
Q Consensus 422 ~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s----~dg~v~lwd~ 492 (670)
..+.|++++-+.+ .+++|..+|.|.+-.++.... .....+|..+.++++|++ |...+|.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4566777665443 688999999999988765432 344566788899999999 555566652 4568999999
Q ss_pred CCC--ceeE--Eec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 005913 493 DRI--QPLR--IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASG 565 (670)
Q Consensus 493 ~~~--~~~~--~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp-~g~~l~sg 565 (670)
.++ .|.. .|. +......+++|-.+.+.+++|...+.+.++|++... .... -.+..+..+...| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 876 2222 222 244567789999999999999999999999998332 2211 2234566778888 67788776
Q ss_pred ECCCeEEEEe-CCCC-eeeEEeeCCC----cceEEEEEcCCC-CEEEEEEC-CCcEEEEeCCCC
Q 005913 566 DEDGTIMMWD-LASG-RCVTPLMGHT----SCVWTLAYSCEG-SLLASGSA-DCTVKLWDVTTS 621 (670)
Q Consensus 566 ~~dg~I~iwD-l~~~-~~~~~~~~h~----~~V~sl~~s~~g-~~l~sgs~-Dg~I~iwd~~~~ 621 (670)
. ||.|-+|| .++- .++..+.... ..+..++|+|-. ..+++... .++|+.+++...
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 6 99999999 3332 2333332222 248899999943 34555554 478999998653
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=1.9e-06 Score=92.22 Aligned_cols=239 Identities=13% Similarity=0.206 Sum_probs=147.9
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 352 ~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
..+.|++++-+ ..++++|..+|.|.+-.+.... ........+|...+++++|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------------------------dSs~E~tp~~ar~Ct~lAw 110 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------------------------DSSAEVTPGYARPCTSLAW 110 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------------------------cccceeccccccccccccc
Confidence 35777777643 4578999999999998876411 0122344578889999999
Q ss_pred cCCC-CEEEEEe----CCCeEEEEeCCCCc--e--eEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 430 SPLG-DFILSSS----ADTTIRLWSTKLNA--N--LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 430 sp~~-~~L~s~s----~Dg~I~lwd~~~~~--~--~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
++-. +.||+|- .|..+.|||+.+.- + ...+.+ -.....+++|..+.+.+.+|...+.+.++|++... .+
T Consensus 111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~ 189 (783)
T KOG1008|consen 111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS 189 (783)
T ss_pred ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence 9854 4566653 36789999998761 1 112222 33345588999888899999999999999997421 11
Q ss_pred EecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEE-CCCC-cEEEEEecCC----CCeEEEEEcCCCC-EEEEE-ECCCe
Q 005913 500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSG-ECVRIFIGHR----SMILSLAMSPDGR-YMASG-DEDGT 570 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd-~~~~-~~~~~~~~h~----~~I~~l~~sp~g~-~l~sg-~~dg~ 570 (670)
...-....+..+...| .++|+++-. ||.|.+|| .++- ++++.+.... ..+..++|.|... .+++. -..++
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 1122233556677778 778887765 99999999 4332 2222222222 2488999999432 34444 45688
Q ss_pred EEEEeCCCC--------eeeEE------eeCCC--cceEEEEEcCCC--CEEEEEECCCcEEEEeC
Q 005913 571 IMMWDLASG--------RCVTP------LMGHT--SCVWTLAYSCEG--SLLASGSADCTVKLWDV 618 (670)
Q Consensus 571 I~iwDl~~~--------~~~~~------~~~h~--~~V~sl~~s~~g--~~l~sgs~Dg~I~iwd~ 618 (670)
|+.+|+..- ..... ++... +.|.+..|++.. ....++...-++.-+++
T Consensus 269 Irlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 269 IRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred EEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 999998521 11111 11112 467777887754 23444444444444444
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.00065 Score=73.73 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=123.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
....-....+.++|+|++++++ .+|.-.|+..... +. ...+.-...
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~----------------------------r~-----k~~G~g~~~ 74 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----------------------------RN-----KAFGSGLSF 74 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT----------------------------EE-----EEEEE-SEE
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC----------------------------cc-----cccCceeEE
Confidence 3344457899999999999995 6777777773320 01 112445567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
+|.+.++ +|+-...++|.++.--.......++.. ..+..+-. |..|+..+.+ .|.+||+.+++.++.+... .
T Consensus 75 vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~ 146 (443)
T PF04053_consen 75 VWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--A 146 (443)
T ss_dssp EE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E
T ss_pred EEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--C
Confidence 8998554 666666888999633223332333321 12333322 7777776654 8999999999999988743 4
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----------cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----------~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
|..+.|++++++++..+.+ .+.+++.... .....+..-...|.+.+|..+ .++-.+.. .|+. +
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 8999999999999998755 6778765433 133333333567888999866 33333333 6666 4
Q ss_pred CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..|.. ..+..-..+++=+.+.+..+.+.....|+.|..+.+...
T Consensus 221 ~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 221 VNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 44432 222223456777888887788999999999999887653
No 333
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=1.8e-05 Score=72.79 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCchhhcccccccccccCChhhHHHHHHHHHHHHhccc-
Q 005913 4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL- 82 (670)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l- 82 (670)
+-+|..|.+||.-|||+.|.++|.+|++..+. ..+.+. .|-+.+... .+-.|-+.....+..|.+-|.++|
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke-~~frvd------rivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le 77 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKE-KGFRVD------RIVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE 77 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhh-cCCcHH------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999987654 333222 112222111 123577888889999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005913 83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (670)
Q Consensus 83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (670)
++|++...++=-.+|-+...--|++++++.|.+||+|-+.+..
T Consensus 78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq 120 (241)
T KOG1333|consen 78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ 120 (241)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999987743
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.07 E-value=0.0015 Score=72.19 Aligned_cols=179 Identities=14% Similarity=0.033 Sum_probs=110.2
Q ss_pred EEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-----------------------
Q 005913 427 ASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------------------- 482 (670)
Q Consensus 427 l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----------------------- 482 (670)
+=++|||+.+... -..+.+.+.|..+.+....+.... ....++++++|.++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3355666655322 234566777777665554444322 224456666666665554
Q ss_pred -----------------CCCcEEEEECCC-----CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE
Q 005913 483 -----------------HDRTARIWSMDR-----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC 539 (670)
Q Consensus 483 -----------------~dg~v~lwd~~~-----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~ 539 (670)
.+++|.++|..+ ...+..+. -......+.++|||+++++++ .+.+|.++|+.+.+.
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 234577777776 23334333 335567899999999988765 488999999987552
Q ss_pred ------------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----------CeeeEEeeCCCcceE----
Q 005913 540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCVW---- 593 (670)
Q Consensus 540 ------------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----------~~~~~~~~~h~~~V~---- 593 (670)
+....--.+ -...+|.++|....|..-|..|..|++.+ ...+..+.-|-.+..
T Consensus 356 ~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~ 434 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS 434 (635)
T ss_pred hhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence 333332223 34678999999888899999999999876 234444443332221
Q ss_pred -EEEEcCCCCEEEEEE
Q 005913 594 -TLAYSCEGSLLASGS 608 (670)
Q Consensus 594 -sl~~s~~g~~l~sgs 608 (670)
+=.-.|+|++|++..
T Consensus 435 ~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 435 MGETKEADGKWLVSLN 450 (635)
T ss_pred CCCcCCCCCCEEEEcc
Confidence 122356777777764
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00012 Score=80.73 Aligned_cols=224 Identities=14% Similarity=0.167 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
+++++|+|..-.||.|-.-|.+.+|...+ .........|..+|..+.||++|
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~----------------------------~e~htv~~th~a~i~~l~wS~~G 113 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT----------------------------TETHTVVETHPAPIQGLDWSHDG 113 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC----------------------------ceeeeeccCCCCCceeEEecCCC
Confidence 67899999999999999999999999764 22344456799999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCcee----------------EEee-----------------CCCccEe-EEEE--------
Q 005913 434 DFILSSSADTTIRLWSTKLNANL----------------VCYK-----------------GHNYPVW-DVQF-------- 471 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~----------------~~~~-----------------~h~~~V~-~l~~-------- 471 (670)
..++++..-|.|.+|.......+ .+++ +....+- -.-|
T Consensus 114 ~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs 193 (1416)
T KOG3617|consen 114 TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERS 193 (1416)
T ss_pred CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcc
Confidence 99999999999999986521111 1111 0000000 0111
Q ss_pred -----ecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC------------
Q 005913 472 -----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------ 534 (670)
Q Consensus 472 -----sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~------------ 534 (670)
.|+|..|+.++.+|+|+-.|-.. ......+.. +. ..+-|++-..-+.+...+-++.++-+
T Consensus 194 ~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~v 270 (1416)
T KOG3617|consen 194 DEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAV 270 (1416)
T ss_pred ccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhh
Confidence 24677888888899888777432 333222211 11 11122222222222222211111111
Q ss_pred ----CCCcE---------EEEEe-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-------eeeEEee-
Q 005913 535 ----SSGEC---------VRIFI-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-------RCVTPLM- 586 (670)
Q Consensus 535 ----~~~~~---------~~~~~-------~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-------~~~~~~~- 586 (670)
+.|.. -..+. .....+.|++++..+..|+.|...|.+.+|--... .-...+.
T Consensus 271 k~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~ 350 (1416)
T KOG3617|consen 271 KVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG 350 (1416)
T ss_pred hhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC
Confidence 00000 00000 12346999999999999999999999999953221 1122232
Q ss_pred --CCCcceEEEEEcCCCCEEEEEE
Q 005913 587 --GHTSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 587 --~h~~~V~sl~~s~~g~~l~sgs 608 (670)
...+.|+.+.|+|--+.++.-+
T Consensus 351 ~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 351 KRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred chhhccceEEEEeccccchhhhhh
Confidence 2347899999998554444433
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00091 Score=72.34 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=111.1
Q ss_pred EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE---CC-CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (670)
Q Consensus 445 I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 520 (670)
+.+-|-+ +.....+......+..-.|+|++..++..+ .. ..+.++++++++...... ..+.-..-+|+|+|+.|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3333333 444444444556677788999988765553 22 469999999887666655 33444567899999988
Q ss_pred EEEE-cCC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEeCCCCeeeEEeeCCCcceEE
Q 005913 521 ATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG--TIMMWDLASGRCVTPLMGHTSCVWT 594 (670)
Q Consensus 521 ~tgs-~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-dg--~I~iwDl~~~~~~~~~~~h~~~V~s 594 (670)
+.+. .|| .|+++|+.+++..+ +....+.-+.-.|+|||++|+-.++ .| .|.++|+..+.. ..+....+.-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 7654 455 46777888777444 5444444457789999999887654 34 466667665544 334333332236
Q ss_pred EEEcCCCCEEEEEECC-Cc--EEEEeCCCCc
Q 005913 595 LAYSCEGSLLASGSAD-CT--VKLWDVTTST 622 (670)
Q Consensus 595 l~~s~~g~~l~sgs~D-g~--I~iwd~~~~~ 622 (670)
-.|||||.+|+..+.. |. |.+.++.++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 7899999998888754 44 5556555544
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0031 Score=62.94 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=116.6
Q ss_pred eeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 416 LYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.+.+-...+.+++|+|+.+ ++++....+.|...+.. ++.+..+.-. ....-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999866 55666778888888875 6777666543 3457789998888777766678999999884
Q ss_pred CCc------eeEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEE--e------cCCCCeE
Q 005913 494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--I------GHRSMIL 551 (670)
Q Consensus 494 ~~~------~~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~--~------~h~~~I~ 551 (670)
... ....+. .+...+..++|.|.++.|+++-...-..+|.+.. ...+... . .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 2445689999999988888888777777776653 2222111 1 1234578
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 552 ~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
+++++|. |.+++.......|..+| .+|+.+..+.-.. ...-.++|.++|++.+++ .-+...+|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 9999995 56777788888999999 7788776654222 235679999998755544 55555444
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00035 Score=76.24 Aligned_cols=264 Identities=15% Similarity=0.094 Sum_probs=142.0
Q ss_pred cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
....+++++........++.-+..+.+..+..|++..++|+|+..|.|.|+.++.......
T Consensus 53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~------------------- 113 (726)
T KOG3621|consen 53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL------------------- 113 (726)
T ss_pred ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc-------------------
Confidence 3456666666655555555555666677788999999999999999999998875211000
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 483 (670)
......-..|...|++++|++++..+.+|...|.|.+-.+.+. ...+.+....++|..+.+. ++..+++...
T Consensus 114 ---~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~ 189 (726)
T KOG3621|consen 114 ---DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT 189 (726)
T ss_pred ---eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh
Confidence 0000111238899999999999999999999999999888762 1122233345667666665 3333333332
Q ss_pred CCcEEEEECCCCceeEEec-ccCC--CeeEEEEcC----CCCEEEEEEcCCcEEEEECC-CCcEEEEEe-----------
Q 005913 484 DRTARIWSMDRIQPLRIMA-GHLS--DVDCVRWHI----NCNYIATGSSDKTVRLWDVS-SGECVRIFI----------- 544 (670)
Q Consensus 484 dg~v~lwd~~~~~~~~~~~-~~~~--~v~~v~~~p----~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~----------- 544 (670)
...+++++.....++=. ...+ ..-++-|.. +...|+++ .-| .|+|... .|..+++..
T Consensus 190 --r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG-~RlWead~~G~V~~Thqfk~ala~~p~p 265 (726)
T KOG3621|consen 190 --RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPG-LRLWEADFAGEVIKTHQFKDALARPPAP 265 (726)
T ss_pred --hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCC-CceEEeecceeEEEeeehhhhhccCCCC
Confidence 23455554332111100 1112 222333322 22344443 333 6777664 344433322
Q ss_pred --cCCC-----------CeEEEEEcC----CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE
Q 005913 545 --GHRS-----------MILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG 607 (670)
Q Consensus 545 --~h~~-----------~I~~l~~sp----~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg 607 (670)
.+.. .-..+.|.. ++..+.+-+.-| |+|+|..+.+.+.-.. ....|-.++. .|+-|++-
T Consensus 266 ~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dVs~--~~neiFvL 341 (726)
T KOG3621|consen 266 EIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDVSH--CGNEIFVL 341 (726)
T ss_pred cccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeec-CCCceeEEee--cCceEEEE
Confidence 0000 001111111 122333434444 8888887665543321 2233444443 45566666
Q ss_pred ECCCcEEEEeCCCCc
Q 005913 608 SADCTVKLWDVTTST 622 (670)
Q Consensus 608 s~Dg~I~iwd~~~~~ 622 (670)
..||.+++..+.+..
T Consensus 342 ~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 342 NLDRGLKVESVASRQ 356 (726)
T ss_pred ecCCceeEEEeehhH
Confidence 667777777766543
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.00091 Score=71.63 Aligned_cols=201 Identities=13% Similarity=0.155 Sum_probs=120.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------------------------eEEe
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY 459 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~ 459 (670)
.|+.++|+++..-|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999999999999999999986432110 1112
Q ss_pred eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--c------cCCCeeEEEEcC-----CC---CEEEEE
Q 005913 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----NC---NYIATG 523 (670)
Q Consensus 460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~------~~~~v~~v~~~p-----~~---~~l~tg 523 (670)
....++|++++.|.-| ++|+|..+|.+.|.|++....+..-. . ....|+++.|.. ++ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346789999998554 89999999999999998877665422 1 223578888862 22 578999
Q ss_pred EcCCcEEEEECCC---CcE----EEEEecCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEEe
Q 005913 524 SSDKTVRLWDVSS---GEC----VRIFIGHRSMILSLA-MSPD-G-------------------RYMASGDEDGTIMMWD 575 (670)
Q Consensus 524 s~dg~I~iwd~~~---~~~----~~~~~~h~~~I~~l~-~sp~-g-------------------~~l~sg~~dg~I~iwD 575 (670)
+..|.+.+|.+.- +.. ......+.++|..|. |+.+ | .-++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998751 211 122224556666665 3221 1 1234444567899999
Q ss_pred CCCCeeeEEeeCCCcceEEEEE-----cCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 576 LASGRCVTPLMGHTSCVWTLAY-----SCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~-----s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
..+.+.........-....+++ ...+..|++-..+|.|+++.+..-..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 9988776655433233334455 235678899999999999999886554
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.011 Score=64.58 Aligned_cols=241 Identities=17% Similarity=0.138 Sum_probs=132.0
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 354 LNCASISQDGSLVAGG-FSDS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 354 V~~l~fs~d~~~La~g-~~dg----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
+....+||||+++|.+ +..| .|+++|+.+... ....+.. ..-.++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------------l~d~i~~--~~~~~~~ 176 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------------LPDGIEN--PKFSSVS 176 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------------EEEEEEE--EESEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------------cCCcccc--cccceEE
Confidence 4467899999999966 2333 399999876211 0001111 1112389
Q ss_pred EcCCCCEEEEEeCCC-----------eEEEEeCCCCce--eEEeeCCCcc--EeEEEEecCCCEEEEEECC----CcEEE
Q 005913 429 FSPLGDFILSSSADT-----------TIRLWSTKLNAN--LVCYKGHNYP--VWDVQFNPQGHYFASSSHD----RTARI 489 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg-----------~I~lwd~~~~~~--~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d----g~v~l 489 (670)
|.++++.|+....+. .|+.|.+.+... ...+...... ...+..++++++++..+.. ..+.+
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 999988776654332 378888877654 3566654443 5678889999997765432 34777
Q ss_pred EECCCC----ceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCCC
Q 005913 490 WSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 490 wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~g 559 (670)
.++... .....+......+....-+.++.+++... ..+.|...++.+... ...+..+...+.-..+...+
T Consensus 257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 788764 23344443444444433333444444433 245777788876652 33555565533333333445
Q ss_pred CEEEEE-ECCC--eEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEE-EEE-E--CCCcEEEEeCCCCcc
Q 005913 560 RYMASG-DEDG--TIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLL-ASG-S--ADCTVKLWDVTTSTK 623 (670)
Q Consensus 560 ~~l~sg-~~dg--~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l-~sg-s--~Dg~I~iwd~~~~~~ 623 (670)
.+|+.. -.++ .|+++|+..+.....+.. -.+.|..+...++++.+ ++. | .-+++..||+.+++.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 555543 3343 588999984444444443 33556666655655533 222 2 236788888887653
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.0026 Score=68.91 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=95.4
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC-CC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM-DR 494 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~-~~ 494 (670)
+.+.++.|+.+ ..|++...||+++++|+.... .+....-....+....+..+|-.++ ..++.+.+..- ..
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccc
Confidence 89999999875 456666789999999987332 0111111122222233333553333 33444444432 21
Q ss_pred CceeEEec---ccCC------CeeE-EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 495 IQPLRIMA---GHLS------DVDC-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 495 ~~~~~~~~---~~~~------~v~~-v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
....+.+. +... .... ..++.+....+....++.+.+.+-...+. ....+++..|++||+|+++|.
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEE
Confidence 11111111 0000 0000 22334444444444555555444322211 123468999999999999999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCE
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSL 603 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~ 603 (670)
-..+|.+.+.+..-.+.+..+... ......+.|.-++..
T Consensus 234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred EECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 999999999987766666665543 345677888765443
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0005 Score=74.36 Aligned_cols=191 Identities=19% Similarity=0.185 Sum_probs=119.7
Q ss_pred eecCccCEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCc--EEE
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSS---AD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRT--ARI 489 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s---~D-g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~--v~l 489 (670)
+..-...+..-+|+|++..++..+ .. ..+.++++.++....... ..+.-..-+|+|||+.++.+. .||. |++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 333445677788999998765432 22 469999999887655443 222233568999999876654 5564 555
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
.|+......+ +....+.-..-.|+|+|++|+..+.. | .|.++|...+... .+....+.-..-.|||||++|+..+
T Consensus 267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEe
Confidence 6777665333 43333333466899999999877643 3 5777777666553 3433434334788999999998876
Q ss_pred C-CCe--EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913 567 E-DGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 567 ~-dg~--I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
. +|. |.+.|+.++..+..+ .+......-+|.++|..++..+..+
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 4 344 777777666543322 2333344567788887776655443
No 343
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.005 Score=63.63 Aligned_cols=184 Identities=13% Similarity=0.173 Sum_probs=117.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee----C-CCccEeEEEEecCCCEEEEEEC---------CCcEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTAR 488 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~l~~sp~g~~l~s~s~---------dg~v~ 488 (670)
.+.++..-..+..|+++. .| +.+++.+++..+..+. + .....+++...|+|.+.++... -..-.
T Consensus 67 ~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 67 GFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred CcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 334444444445555553 33 6777776555522221 1 1234567888999987666544 11224
Q ss_pred EEECC-CCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCC--C----cE-EEEEecCCCCeEEEEEcCCC
Q 005913 489 IWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 489 lwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~--~----~~-~~~~~~h~~~I~~l~~sp~g 559 (670)
+|-++ .+..++.+..+...-+.++|+|+++.++.+.+. +.|+-|++.. + +. ...+....+..-.++...+|
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 55555 567777777777788999999999887776554 7788887652 1 11 12222344566678888888
Q ss_pred CEEEEEECCC-eEEEEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEEC
Q 005913 560 RYMASGDEDG-TIMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA 609 (670)
Q Consensus 560 ~~l~sg~~dg-~I~iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~ 609 (670)
.+.+++..+| .|.+|+.. |+.+..+.-+...+++++|- ++.+.|+..+.
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 8876555554 99999988 99999888776788889984 44555544443
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.87 E-value=0.018 Score=59.22 Aligned_cols=248 Identities=13% Similarity=0.078 Sum_probs=146.7
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 355 NCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 355 ~~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
-.+..|||++.+++++ ..-.|.+||..+........ .+... +.... ...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~---------------iP~k~----R~~~~--~~~ 97 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE---------------IPPKP----RAQVV--PYK 97 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE---------------ETTS-----B--BS----G
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe---------------cCCcc----hheec--ccc
Confidence 3467899999988642 33459999988743222111 01100 00000 112
Q ss_pred EEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 005913 425 YSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM 501 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~ 501 (670)
..++++.++++++... --.+|.|.|+...+.+..+.... ++.+--+ ....|.+-|.||++.-..++ .++..+..
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec-CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 2357888999887664 34679999999888877766433 2222222 23468899999999999987 55554332
Q ss_pred c----ccCC-CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE--EEecC----------CCCeEEEEEcCCCCEEEE
Q 005913 502 A----GHLS-DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGH----------RSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 502 ~----~~~~-~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h----------~~~I~~l~~sp~g~~l~s 564 (670)
. .... -+..-++...+..++..+-+|.|+-.|+....... .+.-- .+.-.-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1 1111 12233444455556667789999999887654321 11100 122345788876655555
Q ss_pred EE---CCC-------eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCcccccc
Q 005913 565 GD---EDG-------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 565 g~---~dg-------~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sg-s~Dg~I~iwd~~~~~~~~~~ 627 (670)
.- .+| .|.++|+.+++.+.++.. ..++.+|..+.+.. +|++. ..++.+.|||..+++.....
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 32 122 488999999999998863 24678999998765 66554 45799999999998765443
No 345
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.87 E-value=2.1e-05 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 005913 4 LQVVEFVATYLKKKGFSEAENALQAEI 30 (670)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~ 30 (670)
++||++|.+||.++||..|.++|++|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999995
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00016 Score=78.90 Aligned_cols=145 Identities=13% Similarity=0.168 Sum_probs=104.9
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
|...|.--+++..+++++.|+.-|.+++|+-.++.....- .+..+.+..+..+++..++|.|+..|.|.++-+....+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 4566777778888999999999999999998766554332 234455667778888889999999999999988764432
Q ss_pred EEe------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 499 RIM------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 499 ~~~------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
... ..|...|+|++|++|+..+++|.+.|.|.+-.+.+.. ....+..-.+.|..+... ++..|++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence 211 2367889999999999999999999999998877621 122233345667777665 33344433
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0018 Score=70.33 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=101.2
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~ 495 (670)
.+....-....++++|+|++++++ .||.-.|+.....+... .+....+.|.+.+ .+|+-...++|.++.--..
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 344445567899999999999985 46788888854444332 2345568899854 5777777889999632222
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
.....+... ..+..+-. |..|+..+.+ .|.+||+.+++.++.+... +|..+.|+++|.+++..+.+ .+.|++
T Consensus 100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 222233322 23444432 7777776544 8999999999999988643 48999999999999998865 577777
Q ss_pred CCCC-----------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913 576 LASG-----------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 576 l~~~-----------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
.... ..+..+..-...|.+.+|..+ .++-.+.. .++-
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 5433 022233222467888888755 44333333 6665
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.79 E-value=0.015 Score=58.05 Aligned_cols=198 Identities=12% Similarity=0.164 Sum_probs=110.3
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+.+-...+..++|+|+.+ ++|+....+.|...++++ . ......+.+ .+-.-
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G--~-------------------------vlr~i~l~g-~~D~E 68 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG--K-------------------------VLRRIPLDG-FGDYE 68 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC--C-------------------------EEEEEeCCC-CCCce
Confidence 344556699999999755 666777777777666542 0 001111222 35677
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eEEee-----CCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
+|++..++.++++.-.++.+.++++..... ...+. .++..+-.++|.|.+..|+++-...-..+|.+..
T Consensus 69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 888987777777666689999998843211 11222 2456689999999888888887776666776653
Q ss_pred ---CceeEEe--------cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCC---------CCeEEE
Q 005913 495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL 553 (670)
Q Consensus 495 ---~~~~~~~--------~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l 553 (670)
...+... ......+.+++++|.. ++++.+...+.|..+| .+|+.+..+.-.. ...-.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 2222111 1244568899999865 4555566778899999 6787776554222 246789
Q ss_pred EEcCCCCEEEEEECCCeEEEE
Q 005913 554 AMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 554 ~~sp~g~~l~sg~~dg~I~iw 574 (670)
+|.++|++.+ .++-+..++|
T Consensus 228 a~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EE-TT--EEE-EETTTEEEEE
T ss_pred EECCCCCEEE-EcCCceEEEe
Confidence 9999985544 4455555544
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.78 E-value=0.023 Score=63.30 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=113.3
Q ss_pred CCCeEEEEeCCCCceeEEeeCCCc--------------------cEe-EEEEecCCCEEEEEECCC--------------
Q 005913 441 ADTTIRLWSTKLNANLVCYKGHNY--------------------PVW-DVQFNPQGHYFASSSHDR-------------- 485 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~--------------------~V~-~l~~sp~g~~l~s~s~dg-------------- 485 (670)
.+|.+..+|..+++.+-.+..... .+| ...+.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 467888899988887766654211 111 233444456777776655
Q ss_pred ----cEEEEECCCCceeEEecccCCCe------eEEEEc----CCCC---EEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913 486 ----TARIWSMDRIQPLRIMAGHLSDV------DCVRWH----INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (670)
Q Consensus 486 ----~v~lwd~~~~~~~~~~~~~~~~v------~~v~~~----p~~~---~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (670)
.+.-+|..+++....+....... ....+. -++. .+++++.+|.+...|..+|+.+......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 79999999999887764211111 000111 1333 6788889999999999999998765421
Q ss_pred CeEEEEEcCCCCEEEEE------------------ECCCeEEEEeCCCCeeeEEeeCCC--------cceEEEEEcCCCC
Q 005913 549 MILSLAMSPDGRYMASG------------------DEDGTIMMWDLASGRCVTPLMGHT--------SCVWTLAYSCEGS 602 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg------------------~~dg~I~iwDl~~~~~~~~~~~h~--------~~V~sl~~s~~g~ 602 (670)
...++.+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+...-.....+.
T Consensus 331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 11233444 233332 246889999999998776654321 1111111112567
Q ss_pred EEEEEECCCcEEEEeCCCCcccccc
Q 005913 603 LLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.|+.++.||.|+.+|..+++.....
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEE
Confidence 8999999999999999998766543
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0025 Score=72.94 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCcc-EeEEEEec-----CCCEEEEEECCCcEEEEECCCCc-eeEEec--
Q 005913 433 GDFILSS-SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMA-- 502 (670)
Q Consensus 433 ~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~-~~~~~~-- 502 (670)
.++|+.. .....|+-.|+++++.+..++.|... |.+++-.. ....-+.|-.+..+..||.+-.. .+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 34577999999999999999887643 55443321 13446677788899999987532 211111
Q ss_pred --ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 503 --GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 503 --~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
.......|++-+.+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||+||++.+ +..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 233457788766555 799999999999999543344445556788999999999999987665 567888875
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.73 E-value=0.02 Score=63.78 Aligned_cols=189 Identities=12% Similarity=0.164 Sum_probs=115.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc--EeEEEEec--CCCEEEEEE---------CCCcEEEEECCCCceeEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNP--QGHYFASSS---------HDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~l~~sp--~g~~l~s~s---------~dg~v~lwd~~~~~~~~~ 500 (670)
..++.++.+|.|+-+|.++++.+-.+...... -..+.-+| .+..++.++ .++.+..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67778888999999999999988776543221 01111122 123444543 367899999999988876
Q ss_pred ecccCCC--------------------e-eEEEEcCCCCEEEEEEcCC------------------cEEEEECCCCcEEE
Q 005913 501 MAGHLSD--------------------V-DCVRWHINCNYIATGSSDK------------------TVRLWDVSSGECVR 541 (670)
Q Consensus 501 ~~~~~~~--------------------v-~~v~~~p~~~~l~tgs~dg------------------~I~iwd~~~~~~~~ 541 (670)
+...... + ...++.+.+..+++++.++ .|.-+|..+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6532110 1 1234455667788887665 79999999999988
Q ss_pred EEecCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-
Q 005913 542 IFIGHRSMIL------SLAMS----PDGR---YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG- 607 (670)
Q Consensus 542 ~~~~h~~~I~------~l~~s----p~g~---~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg- 607 (670)
.+........ ...+. -+|. .++.++.+|.+...|..+|+.+-..... ...++.+| ..++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEcc
Confidence 7652211110 01111 1343 6788889999999999999988664321 01123333 222222
Q ss_pred -----------------ECCCcEEEEeCCCCcccccc
Q 005913 608 -----------------SADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 608 -----------------s~Dg~I~iwd~~~~~~~~~~ 627 (670)
..+|.|.-.|..+++.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK 382 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence 23567777777777665544
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.72 E-value=0.034 Score=58.31 Aligned_cols=273 Identities=12% Similarity=0.060 Sum_probs=128.2
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCCE
Q 005913 358 SISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDF 435 (670)
Q Consensus 358 ~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~ 435 (670)
+|.+||+.|+ ++..||.-.+|.++-. ......+..+. ....+..++|+++.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~---------------------------t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA---------------------------TGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT---------------------------T-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc---------------------------cCEEEECccCCCCCccceEEecCCCe
Confidence 5678886655 5555777666654421 11223333322 22224667888888
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEE----------------------CCCcEEEEE
Q 005913 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSS----------------------HDRTARIWS 491 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s----------------------~dg~v~lwd 491 (670)
++-.....+|+-.|+.+.+....+.....-+-...|.. ++..++-.- -.+.|.-.|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 87666667899999999888777777666665566653 555544321 123466667
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCC-CcEEEEEecCC--CCeEEEEEcCCCCEEE
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSS-GECVRIFIGHR--SMILSLAMSPDGRYMA 563 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~-~~~~~~~~~h~--~~I~~l~~sp~g~~l~ 563 (670)
+.+++....+. -...+..+.|+|....+++=+..| .-|||-+++ |...+.+..+. ..+..=-|.|||..|.
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 77776655554 345677889998765555543332 236665543 33333333332 2344456899998766
Q ss_pred EEE-----CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----------------cEEEEeCCCCc
Q 005913 564 SGD-----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------------TVKLWDVTTST 622 (670)
Q Consensus 564 sg~-----~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----------------~I~iwd~~~~~ 622 (670)
--+ .+..|.-+|+.++........ .....+--++||++++.=+.|. -|.++++..+.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 522 345688888888764332221 1334566688999887656553 34455655433
Q ss_pred cccccccccCCcccccccccCCCCC-CeEEEEEecCCcEEEEeeC
Q 005913 623 KVLKTEEKSGTNRLRSLKTLPTKST-PVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~fs~~~~~La~gs~ 666 (670)
....... . ..+ ..+.++.. .=....|||||+.++..|.
T Consensus 332 ~~~l~~h-~--~sw---~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 332 FRKLARH-D--TSW---KVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp EEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred eeeeeec-c--Ccc---eeecCCCccCCCCCccCCCCCEEEEECC
Confidence 2111000 0 000 01111111 1256799999998876664
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.70 E-value=0.017 Score=61.61 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=127.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-ccCEEEEEE
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF 429 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~ 429 (670)
...+....|||||+.+|.. .++.|.++++........... +. ..+. ++...-+ .... -+.-.++.|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~d--g~------~~i~--nG~~dwv--yeEEv~~~~~~~~W 108 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTD--GE------PGIY--NGVPDWV--YEEEVFDRRSAVWW 108 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES----T------TTEE--ESB--HH--HHHHTSSSSBSEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccc--cc------eeEE--cCcccee--ccccccccccceEE
Confidence 5678899999999999988 567899998765422211110 00 0000 0000000 0000 011234678
Q ss_pred cCCCCEEEEEeCC-C-----------------------------------eEEEEeCCCCceeE-Ee----eCCCccEeE
Q 005913 430 SPLGDFILSSSAD-T-----------------------------------TIRLWSTKLNANLV-CY----KGHNYPVWD 468 (670)
Q Consensus 430 sp~~~~L~s~s~D-g-----------------------------------~I~lwd~~~~~~~~-~~----~~h~~~V~~ 468 (670)
|||+++|+....| . .+.++++.+++... .. .....-+..
T Consensus 109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence 8888877755432 1 13344555444321 11 123455788
Q ss_pred EEEecCCCEEEEEE--CC---CcEEEEECCCCceeEEecc----cCCCeeEEEEc-CCCCE-EEEEEcCCc--EEEEECC
Q 005913 469 VQFNPQGHYFASSS--HD---RTARIWSMDRIQPLRIMAG----HLSDVDCVRWH-INCNY-IATGSSDKT--VRLWDVS 535 (670)
Q Consensus 469 l~~sp~g~~l~s~s--~d---g~v~lwd~~~~~~~~~~~~----~~~~v~~v~~~-p~~~~-l~tgs~dg~--I~iwd~~ 535 (670)
+.|.+++..|+..- .+ ..+.++|..++........ -........|. +++.. +.....+|. |.+++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 99999988444443 22 2466677776654433321 11223355554 66554 444556664 5566665
Q ss_pred CCcEEEEEecCCCCeEE-EEEcCCCCEEE-EEECC----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE
Q 005913 536 SGECVRIFIGHRSMILS-LAMSPDGRYMA-SGDED----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 536 ~~~~~~~~~~h~~~I~~-l~~sp~g~~l~-sg~~d----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs 608 (670)
.+. .+.+....-.|.. +.++++++.|+ ++..+ ..|+.-++..+..+..+....+.-.++.|||+|++++...
T Consensus 269 ~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 555 3455545556744 67888877554 45442 3566667773344455554433336899999999877544
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.021 Score=61.49 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=148.6
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 354 LNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 354 V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
-.++++++++..+. ....+..|.+.|...... ......+. ....++++|+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~ 126 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD 126 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence 45678888887544 444568899998553111 11111122 5567899999
Q ss_pred CCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE-E---eccc
Q 005913 433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH 504 (670)
Q Consensus 433 ~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~-~---~~~~ 504 (670)
+..+..+.. ++++.+.|..+...+.....-..+ ..+++.|+|..++++. .++.+.+.|.......+ . ...-
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~ 205 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV 205 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence 987776655 688999999988887775544455 8899999999766665 78899999977655443 0 0112
Q ss_pred CCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCC
Q 005913 505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDE-DGTIMMWDLASG 579 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~~ 579 (670)
......+.+.|+|+++.+.... +.+...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+.
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2344678899999977665444 5899999998887765221112 4567899999999988854 489999999888
Q ss_pred eeeEEeeCCC---cceEEEEEcCC
Q 005913 580 RCVTPLMGHT---SCVWTLAYSCE 600 (670)
Q Consensus 580 ~~~~~~~~h~---~~V~sl~~s~~ 600 (670)
.....+.... ..+..+++.+.
T Consensus 286 ~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 286 RVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceeeeecccccccccceeccceee
Confidence 7777655433 24556666553
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.024 Score=60.99 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=140.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---CCcEEEEECCCCcee
Q 005913 423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPL 498 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~~~~~ 498 (670)
.-.+++.++.+..+. ....+..|.+.|..+.........-. ....++++|++..+.++.. ++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345678888888544 44456889999988776665554333 4567999999987777655 688889998888877
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEE-E---EecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-I---FIGHRSMILSLAMSPDGRYMASGDED---GT 570 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~-~---~~~h~~~I~~l~~sp~g~~l~sg~~d---g~ 570 (670)
........+ ..+++.|+|+.+++.. .++.|.+.|..+....+ . ...-...-..+.++|+|.++...... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 775433334 8899999999777665 78899999977665553 1 01112234678999999977665443 59
Q ss_pred EEEEeCCCCeeeEEeeCCCc-ceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCcc
Q 005913 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTK 623 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~~ 623 (670)
+...|..++.....-..-.. ....+..+|+|..+.+.... +.+.+-|......
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 99999998877665221111 45678899999988888544 8888888877543
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.61 E-value=0.042 Score=56.15 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=127.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
..++.|+.|+.+| |.++++.... ..... .+..+|..+...++-+.|++-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~i--~~~~~I~ql~vl~~~~~llvLs 54 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTRI--LKLSSITQLSVLPELNLLLVLS 54 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc---------------------------cceeE--eecceEEEEEEecccCEEEEEc
Confidence 3578999999999 8888872100 01111 1223399999999888777665
Q ss_pred CCCeEEEEeCCCCceeEEe--------------eCCCccEeEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceeE
Q 005913 441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR 499 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~l~--~sp~g~~l~s~s~dg~v~lwd~~~~-----~~~~ 499 (670)
|+.++++++......... ......+..++ -...+...+++...++|.+|..... +..+
T Consensus 55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k 133 (275)
T PF00780_consen 55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK 133 (275)
T ss_pred -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence 499999998754433311 11122343333 1123444444455568998887653 3444
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC------------CCeEEEEEcCCCCEEEEEEC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------SMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------~~I~~l~~sp~g~~l~sg~~ 567 (670)
.+. -...+.+++|. ++.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++-
T Consensus 134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 444 33778899998 6678887754 48889999877665542211 12333333 345555543
Q ss_pred CCeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 568 DGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
|..-.+.|. .|++.. .+.- ...+.++++. ..+|+..+. +.|.||++.++..
T Consensus 207 ~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 207 DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcE
Confidence 333344443 443332 2222 2344556653 457777665 4599999999754
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.05 Score=53.06 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=91.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEE
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v 511 (670)
-|++++.|+..|.+++.+.+++.....+.....-=......+++..+..|++|++++..|..+...+...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 37889999999999999999998777666433222234566789999999999999999999988888766444444444
Q ss_pred EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
+..|-...|.++...|.|.--...++....... ...++|.+ +| -+..+..+.-||.+.-+| ..|+.+.+
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEe
Confidence 555633344444455555444444432111110 11123221 11 134455555667666666 55555543
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00025 Score=72.42 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=76.8
Q ss_pred EEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEE
Q 005913 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLAS 606 (670)
Q Consensus 529 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~s 606 (670)
+++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+.+...+..+..| ..+++++|..|. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444555667888899999999776 7888999999999999999999888888 789999998865 57888
Q ss_pred EECCCcEEEEeCCCCcc
Q 005913 607 GSADCTVKLWDVTTSTK 623 (670)
Q Consensus 607 gs~Dg~I~iwd~~~~~~ 623 (670)
|-..|.|.|||+...+.
T Consensus 254 Gl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCceEEEEEccCCCc
Confidence 88999999999988654
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.031 Score=60.61 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-------ccCCCeeEEEEcCC
Q 005913 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHIN 516 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-------~~~~~v~~v~~~p~ 516 (670)
.|++|+.. |..+..+.-..+.|.++.|+.+ ..|++...||.++++|+.... ...+. -....+.+..+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 58899877 5555544433378999999875 456677799999999986433 11111 11111222233335
Q ss_pred CCEEEEEEcCCcEEEEECCCCc-EEEEEec--------CCC-CeEE-EEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 517 CNYIATGSSDKTVRLWDVSSGE-CVRIFIG--------HRS-MILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 517 ~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~--------h~~-~I~~-l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
|-.++ +.++.+.+..-.... ..+.+.. +.. .... ..++.+....+....++.+.+.+-...+. +
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 53333 345555544322211 1111110 000 0101 23444555555555556666444332211 1
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
...+++..++.||+|++||.-..+|.+.|.+.+-.+
T Consensus 214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 124689999999999999999999999998765543
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.52 E-value=0.072 Score=52.02 Aligned_cols=144 Identities=8% Similarity=-0.014 Sum_probs=96.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
..+++.||..+.+.-.|..++.....-.- ...|.+-+.- -|.+++.|+..|.+++.+..++.....+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 35677788888888888887766543211 1122222221 477899999999999999999988877764322222334
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
..+++..+.+|+.|++.+..|.++..++...+-..+...+-++.|-...|+.+...|.+.--....
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 568999999999999999999999999987665544445556666333444444555555444443
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.038 Score=57.14 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=116.4
Q ss_pred EEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---
Q 005913 428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--- 503 (670)
Q Consensus 428 ~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~--- 503 (670)
.|.++...| .+--..+.|.-|+..++... .+.. ...+.++..-..+..|+++.. .+++++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 477777744 45556788999998755432 2222 223344444444445555533 466777765555333321
Q ss_pred --cCCCeeEEEEcCCCCEEEEEEc-----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C
Q 005913 504 --HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G 569 (670)
Q Consensus 504 --~~~~v~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g 569 (670)
.....+.+...|+|.+.++... -|.|+.+|. .+..++.+..+-..-..|+||||++.|+.+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1244667888899987776444 133555554 577777776666666789999999888877654 8
Q ss_pred eEEEEeCCC--C----ee-eEEeeCCCcceEEEEEcCCCCEEEEEECCC-cEEEEeCC
Q 005913 570 TIMMWDLAS--G----RC-VTPLMGHTSCVWTLAYSCEGSLLASGSADC-TVKLWDVT 619 (670)
Q Consensus 570 ~I~iwDl~~--~----~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-~I~iwd~~ 619 (670)
.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+-.
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 888888752 2 11 122223445666788888888886665554 89999987
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.13 Score=56.14 Aligned_cols=195 Identities=17% Similarity=0.142 Sum_probs=112.2
Q ss_pred CEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-----------c
Q 005913 423 PVYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----------T 486 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-----------~ 486 (670)
.+...++||+|+++|.+ +..| +|+++|+.+++.+...-. ......+.|.+++..|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988754 4444 599999999876543211 11122399999988877765433 3
Q ss_pred EEEEECCCCcee--EEecccCCC--eeEEEEcCCCCEEEEEEcC----CcEEEEECCCC----cEEEEEecCCCCeEEEE
Q 005913 487 ARIWSMDRIQPL--RIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMILSLA 554 (670)
Q Consensus 487 v~lwd~~~~~~~--~~~~~~~~~--v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~----~~~~~~~~h~~~I~~l~ 554 (670)
|+.|.+.+.... ..+...... ...+..++++++|+..+.. ..+++.|+..+ .....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888776443 455544433 5678889999998875433 35788888875 23333333333443333
Q ss_pred EcCCCCEEEEE---ECCCeEEEEeCCCCee---eEEeeCCCc--ceEEEEEcCCCCEEEEEECCC--cEEEEeCC
Q 005913 555 MSPDGRYMASG---DEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLLASGSADC--TVKLWDVT 619 (670)
Q Consensus 555 ~sp~g~~l~sg---~~dg~I~iwDl~~~~~---~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~ 619 (670)
-+..+.+++.. ...+.|...++..... ...+..|.. .+..+... .+.+++....++ .|++|++.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence 33344444433 3457788888877652 224555555 34444443 233444444554 57888888
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.04 Score=57.81 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=106.5
Q ss_pred CCEEEEEeC----------CCeEEEEeCCCC----ceeEEe--eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913 433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 433 ~~~L~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
..+|++|+. .|.|.++++... ..+... ....++|.+++-- .+ +++++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 457777753 288999999874 122221 2346788888766 34 454444 4899999998777
Q ss_pred eeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 497 PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 497 ~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
.+.....+.. .+.++.. .++++++|..-+.+.++..+. +..+..+.. ....++++.|-+++..+++++.+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 2322222223 4555544 467999999988888875443 332333322 23458888888777899999999999
Q ss_pred EEEeCCC-------Ce-eeE-EeeCC-CcceEEE---EEcC--CC------CEEEEEECCCcEEEE
Q 005913 572 MMWDLAS-------GR-CVT-PLMGH-TSCVWTL---AYSC--EG------SLLASGSADCTVKLW 616 (670)
Q Consensus 572 ~iwDl~~-------~~-~~~-~~~~h-~~~V~sl---~~s~--~g------~~l~sgs~Dg~I~iw 616 (670)
.++.... +. .+. ...-| ...|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9998762 22 222 22222 3457776 4444 12 248888899998843
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.42 E-value=0.022 Score=59.77 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=108.8
Q ss_pred CeEEEEeCCCCceeEEeeC-CCccEeEEEEec---C----CCEEEEEEC----------CCcEEEEECCCC----ceeEE
Q 005913 443 TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP---Q----GHYFASSSH----------DRTARIWSMDRI----QPLRI 500 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp---~----g~~l~s~s~----------dg~v~lwd~~~~----~~~~~ 500 (670)
+.|++.|..+.+.+..+.- ....+.+++... + ..+|++|+. .|.+.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888877655542 233445444332 2 467887752 288999999874 22222
Q ss_pred e--cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 501 M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 501 ~--~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
+ ....++|.+++-- ++ +|+++ .++.|.+|++...+ ....-. .....++++... +.+++.|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 2346778888765 44 45554 36899999998887 443322 222355555554 669999998888888754
Q ss_pred CC-CeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 577 AS-GRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 577 ~~-~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.. ...+..+. .....++++.|-++++.++.+..+|.|.++....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 43 33233332 2345688888886667999999999999999864
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.32 E-value=0.17 Score=54.24 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=53.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE----cCCC----------------C-EEE
Q 005913 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----SCEG----------------S-LLA 605 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~----s~~g----------------~-~l~ 605 (670)
...+.+++.+|++++.|+.+.=|+|.++|+.++..+..++|....= +.| .... . +++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3457889999999999998888999999999998887777654321 111 1111 1 344
Q ss_pred EEECCCcEEEEeCCCCcc
Q 005913 606 SGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~~~~ 623 (670)
-+-.-|.|.||.+..+.+
T Consensus 385 yaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EeccCCeEEEEecCCCCE
Confidence 455678999999888654
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0011 Score=71.53 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=80.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
...|.-+.|+|.-..+|.+..+|.|.+..+. ++.+.++.-|+.+++ +++|.|||+.+|+|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568889999999999999999999999998 888888887888888 99999999999999999999999999988776
Q ss_pred Eec-ccCCCeeEEEEcC
Q 005913 500 IMA-GHLSDVDCVRWHI 515 (670)
Q Consensus 500 ~~~-~~~~~v~~v~~~p 515 (670)
.+. .-..+|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346788888863
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0012 Score=71.28 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=78.5
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~-~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
..+.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999887 777888876777777 999999999999999999999999999987766
Q ss_pred ee-CCCcceEEEEEcC
Q 005913 585 LM-GHTSCVWTLAYSC 599 (670)
Q Consensus 585 ~~-~h~~~V~sl~~s~ 599 (670)
.. .-...|.++.|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2335677777763
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.026 Score=63.80 Aligned_cols=150 Identities=15% Similarity=0.246 Sum_probs=92.1
Q ss_pred ccEeEEEEecCCCEEEEEE------CCCcEEEE--ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC---------
Q 005913 464 YPVWDVQFNPQGHYFASSS------HDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------- 526 (670)
Q Consensus 464 ~~V~~l~~sp~g~~l~s~s------~dg~v~lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d--------- 526 (670)
..+.+.+++|+|..++... .|..-.+| +.. +.......+ ....+-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999999887765 24444444 542 223222333 247889999999888877533
Q ss_pred ---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE---EeCCCCe-ee---EEee-CCCcceEEE
Q 005913 527 ---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM---WDLASGR-CV---TPLM-GHTSCVWTL 595 (670)
Q Consensus 527 ---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i---wDl~~~~-~~---~~~~-~h~~~V~sl 595 (670)
+.+.+.++..+.... ...+.|..+.|||||..++... +|.|++ -....|. .+ ..+. +-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 233333443333222 2346799999999999888766 477777 4444453 11 1122 223346889
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 596 AYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 596 ~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.|..++.++ ++..++...+|.+.-.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecC
Confidence 999998855 5565665666766543
No 369
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.03 Score=63.37 Aligned_cols=204 Identities=9% Similarity=0.060 Sum_probs=101.8
Q ss_pred eEEEEeCCCCceeEEeeCCCccE-eEEEEecCCCEEEEEECC------CcEEEEECCCCceeEE--ecccCCCeeEEEEc
Q 005913 444 TIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLRI--MAGHLSDVDCVRWH 514 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~~--~~~~~~~v~~v~~~ 514 (670)
.+..||..+......-.-..... .+++. -++..++.||.+ ..+..||..+..-... +.........+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-- 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-- 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--
Confidence 46677877654322111111110 12222 266777777753 3467788766542211 111111122222
Q ss_pred CCCCEEEEEEcCC-----cEEEEECCCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC------------------
Q 005913 515 INCNYIATGSSDK-----TVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDG------------------ 569 (670)
Q Consensus 515 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~dg------------------ 569 (670)
-+++..+.|+.++ ++..||..+.+-... +.........+ .-+|...+.||.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccc
Confidence 3677777787654 488899887643321 11111111122 22577777777553
Q ss_pred -----eEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCC------cEEEEeCCCCccccccccccCCccc
Q 005913 570 -----TIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADC------TVKLWDVTTSTKVLKTEEKSGTNRL 636 (670)
Q Consensus 570 -----~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~~ 636 (670)
.+..||..+.+ .+..+....... ++ ..-+|.+.+.||.++ .+..||..+. ..|
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------------~~W 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY------------NGW 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCC------------CCe
Confidence 47778877653 233322111111 11 223577777777642 3456665541 124
Q ss_pred ccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 637 ~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+..++........+.+ +|.+.++|+.+|
T Consensus 494 ~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 494 ELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred eEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 445555554444433333 788999999887
No 370
>PRK10115 protease 2; Provisional
Probab=97.23 E-value=0.69 Score=53.76 Aligned_cols=236 Identities=11% Similarity=0.070 Sum_probs=121.6
Q ss_pred EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 354 LNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
+..+.+||||++||.+... ..|++-++.+... ....+. +.-..++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---------------------------l~~~i~---~~~~~~~ 178 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---------------------------YPELLD---NVEPSFV 178 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---------------------------CCcccc---CcceEEE
Confidence 6778899999999976433 2366666653110 000011 1114589
Q ss_pred EcCCCCEEEEEeCC------CeEEEEeCCCC--ceeEEeeCCCccEeEEEE-ecCCCEEEEEEC---CCcEEEEECC--C
Q 005913 429 FSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSH---DRTARIWSMD--R 494 (670)
Q Consensus 429 ~sp~~~~L~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~g~~l~s~s~---dg~v~lwd~~--~ 494 (670)
|++|++.|+.+..+ ..|+.+++.++ +....+.......+-..+ +.++.+++..+. ++.+.+|+.+ .
T Consensus 179 w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~ 258 (686)
T PRK10115 179 WANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD 258 (686)
T ss_pred EeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence 99999877655432 36888888887 445556544444442334 438887666543 3578888853 3
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECC-CCcEEEEEecC-C-CCeEEEEEcCCCCEEEEEECC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVS-SGECVRIFIGH-R-SMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~-~~~~~~~~~~h-~-~~I~~l~~sp~g~~l~sg~~d 568 (670)
+.+...+. +...+..-..+..+.+++....+ ..|...++. .++. ..+..+ . ..|..+.++ .+.++++...+
T Consensus 259 ~~~~~~~~-~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~ 335 (686)
T PRK10115 259 AEPFVFLP-RRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQR 335 (686)
T ss_pred CCceEEEE-CCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeC
Confidence 33322222 22222222223333333333222 234445554 2322 333344 3 367888887 33455566667
Q ss_pred CeEEEEeCCC-CeeeEEee-CCCcceEEEEEc--CCC-CEEEEEEC---CCcEEEEeCCCCc
Q 005913 569 GTIMMWDLAS-GRCVTPLM-GHTSCVWTLAYS--CEG-SLLASGSA---DCTVKLWDVTTST 622 (670)
Q Consensus 569 g~I~iwDl~~-~~~~~~~~-~h~~~V~sl~~s--~~g-~~l~sgs~---Dg~I~iwd~~~~~ 622 (670)
|.-+++-+.. +..+..+. .....+..+.++ +++ .++++.++ -+.+..+|+.++.
T Consensus 336 g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 336 GLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7655544332 22334333 222233334444 333 34444443 3678888887653
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.22 E-value=0.025 Score=63.98 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=105.4
Q ss_pred cCEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC---------
Q 005913 422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------- 484 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--------- 484 (670)
..+.+.+.+|+|+.++... .|+ .|.+++.. +.......+. ..+.-.|+|+|..+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999877654 243 45555542 2222223332 37788999998877777532
Q ss_pred ---CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEE---EECCCCcEEEE-----Ee-cCCCCeEE
Q 005913 485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----FI-GHRSMILS 552 (670)
Q Consensus 485 ---g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~i---wd~~~~~~~~~-----~~-~h~~~I~~ 552 (670)
+.+.+.+++.+.... .....|..+.|+|||..++... +|.|++ -....|. .+. +. +-...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 223333444333222 2345799999999999998876 577777 4434443 221 22 23334688
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcE
Q 005913 553 LAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 553 l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
+.|.+++.++ ++..++.-.+|-+.- |.....+.+ ...++.+++-+++ -++....+|.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9999999855 555555555555432 222212222 2466777777653 45555666633
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.001 Score=44.03 Aligned_cols=39 Identities=49% Similarity=0.744 Sum_probs=34.6
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.0074 Score=69.20 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=96.6
Q ss_pred ECCCcEEEEECCCCceeEEecccCCC-eeEEEEcCC-------CCEEEEEEcCCcEEEEECCCCc--EEEEE---ecCCC
Q 005913 482 SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSGE--CVRIF---IGHRS 548 (670)
Q Consensus 482 s~dg~v~lwd~~~~~~~~~~~~~~~~-v~~v~~~p~-------~~~l~tgs~dg~I~iwd~~~~~--~~~~~---~~h~~ 548 (670)
.....|+-.|+++|+.+..+..|... |..+ .|+ ....++|-++..+..||.|-.. ++..- .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 35678999999999999999877544 4444 343 3456778889999999998532 33211 12334
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
..+|++-+.+| +||+|+.+|.||+||--..+.-..+.+-..+|.+|+.+.||++|++.+ +..+.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67888877776 799999999999999433233334556678999999999999888766 4467777753
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.15 E-value=0.0014 Score=43.27 Aligned_cols=39 Identities=49% Similarity=0.969 Sum_probs=34.7
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
+++...+..|...|.++.|++++.++++++.||.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455667778889999999999999999999999999996
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.035 Score=62.76 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=96.7
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE-
Q 005913 432 LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR- 499 (670)
Q Consensus 432 ~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~~~~~~~- 499 (670)
++...+.|+.+ ..+..||..+......-.-....-......-+|...+.||.++ ++..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45666666643 3477888776543221111110001111222677888888764 47888887653222
Q ss_pred -EecccCCCeeEEEEcCCCCEEEEEEcCC-----------------------cEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913 500 -IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSLAM 555 (670)
Q Consensus 500 -~~~~~~~~v~~v~~~p~~~~l~tgs~dg-----------------------~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 555 (670)
.+.........++ -++...+.|+.++ .+..||..+.+-...-.-.......-+.
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 1111111122222 2677777777542 4777888766443221111111111122
Q ss_pred cCCCCEEEEEECC------CeEEEEeCCC---CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCC
Q 005913 556 SPDGRYMASGDED------GTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTS 621 (670)
Q Consensus 556 sp~g~~l~sg~~d------g~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~ 621 (670)
.-+|+..+.||.+ ..+..||..+ +..+..+...........+ +|.+.++||.|| ++..||..+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 3356777777654 2467899876 3444444433333333333 788999999888 6777776664
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.032 Score=63.08 Aligned_cols=217 Identities=16% Similarity=0.191 Sum_probs=115.6
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 005913 433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR 499 (670)
Q Consensus 433 ~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~ 499 (670)
+..++.|+.+ ..+..+|..++.......- ....-.+++.. +|..+++||.| .++..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4455566555 3577888877644332221 11122233333 56788889888 356777777655322
Q ss_pred E--ecccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcEEEEEecCCCCeEEEE-EcCCCCEEEEEECCC--
Q 005913 500 I--MAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSMILSLA-MSPDGRYMASGDEDG-- 569 (670)
Q Consensus 500 ~--~~~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~I~~l~-~sp~g~~l~sg~~dg-- 569 (670)
. +........... -+|...++|+.|| +|-.||..+.+.-..-. ......+.+ ..-+|...++||.++
T Consensus 364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1 111111122222 3678888899886 47778887654322111 111122222 223577778887554
Q ss_pred ----eEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCCc-----EEEEeCCCCccccccccccCCccccc
Q 005913 570 ----TIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCT-----VKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 570 ----~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
++..||..++. .+..+..-..... ++ .-++.+.+.||.|+. |..||..+. .|..
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~ 505 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETN-------------QWTM 505 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCC-------------ceeE
Confidence 57788877654 3333322221111 22 236788899988873 566666553 2334
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 670 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs~ 670 (670)
+.......+.+..+ .-++++.++|++||++
T Consensus 506 v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVV--VLGGKLYAVGGFDGNN 535 (571)
T ss_pred cccCccccccccEE--EECCEEEEEecccCcc
Confidence 43343333333322 3467888999998863
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.00066 Score=64.83 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=89.1
Q ss_pred EEEEECCCcEEEEECCCCceeE-EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEE-
Q 005913 478 FASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLA- 554 (670)
Q Consensus 478 l~s~s~dg~v~lwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~- 554 (670)
+...+.||.|+-++++..+... .-..+...... ..-+..+++|+.+|.|++|...-. .....+..-...|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445677888877776433211 11111111111 123567999999999999987621 21222222223343332
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC-cceEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCc
Q 005913 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG--SADCTVKLWDVTTST 622 (670)
Q Consensus 555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sg--s~Dg~I~iwd~~~~~ 622 (670)
--.++.+..+++.||.|+.|++.-++.+.....|+ .++..+..+..+..++.+ |.|..++.|++....
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 22245688899999999999999988888777777 566666666667777777 788888888876543
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.07 E-value=0.31 Score=50.33 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=94.9
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceeEE----eeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE--Eecc--
Q 005913 434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IMAG-- 503 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~--~~~~-- 503 (670)
+.+.+-|.||++.-..+.. ++.... +.....++. .-.+...+..++-.+..|.|+--|+....+.. .+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 4577778899998888873 333321 111222222 33455555556667888999998887654322 1110
Q ss_pred --------cCCCeeEEEEcCCCCEEEEEEc---CC-------cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEE
Q 005913 504 --------HLSDVDCVRWHINCNYIATGSS---DK-------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS 564 (670)
Q Consensus 504 --------~~~~v~~v~~~p~~~~l~tgs~---dg-------~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~s 564 (670)
-.+.-.-+++|+..+.|++.-. +| .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 1123445788877666665321 11 588999999999998864 24688999999776 5555
Q ss_pred E-ECCCeEEEEeCCCCeeeEEeeC
Q 005913 565 G-DEDGTIMMWDLASGRCVTPLMG 587 (670)
Q Consensus 565 g-~~dg~I~iwDl~~~~~~~~~~~ 587 (670)
. ..++.|.+||..+|+.+.++..
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE--
T ss_pred EcCCCCeEEEEeCcCCcEEeehhc
Confidence 4 4579999999999999988764
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0073 Score=69.22 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~ 441 (670)
.+..++.|++.|.|-..|+.+.- .....-..-.++|++++|+.+|..++.|-.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL---------------------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~ 150 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL---------------------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLG 150 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc---------------------------chhhcCCccCCcceeeEecCCCceeccccC
Confidence 46789999999999888876410 001111123589999999999999999999
Q ss_pred CCeEEEEeCCCCceeEEeeCCCccEeEEE---EecCCCEEEEEECCCcEEEEEC
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ---FNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~---~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
+|.|.+||+.++..++.+..|..|..++- |..++..++++...|. +|.+
T Consensus 151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999999999999988887777766554 4446677888877776 5654
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.97 E-value=0.032 Score=47.72 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=65.4
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 354 LNCASISQ---DG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 354 V~~l~fs~---d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
|+++++.. || +-|++|+.|..||||+-.. ........+.|++++-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------------------~~~Ei~e~~~v~~L~~ 50 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------------------IVAEITETDKVTSLCS 50 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------------------EEEEEecccceEEEEE
Confidence 56666653 32 6799999999999998442 2222234567888887
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-C--C-CEEEEEECCCcEE
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-Q--G-HYFASSSHDRTAR 488 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~--g-~~l~s~s~dg~v~ 488 (670)
... ..++.+..+|+|-+|+-. ..+...+.... +.++.+.. + | .-|++|-.+|.|-
T Consensus 51 ~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 51 LGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 765 668889999999999753 33444444333 55555544 2 2 2478887777663
No 381
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.94 E-value=0.49 Score=49.84 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=120.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.-+.|+|.|||+++++ ...|.|++++........... ..............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~----------------------~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVAD----------------------LPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecc----------------------cccccccccCCcccceeccc
Confidence 3578999999988775 469999999933211000000 00112234567889999984
Q ss_pred ---CCEEE-EEeCC--------CeEEEEeCCCC-------ceeE-EeeC---CCccEeEEEEecCCCEEEEEECCC----
Q 005913 433 ---GDFIL-SSSAD--------TTIRLWSTKLN-------ANLV-CYKG---HNYPVWDVQFNPQGHYFASSSHDR---- 485 (670)
Q Consensus 433 ---~~~L~-s~s~D--------g~I~lwd~~~~-------~~~~-~~~~---h~~~V~~l~~sp~g~~l~s~s~dg---- 485 (670)
..+|. +.+.. ..|.-|..... +.+. .... .......+.|.|+|.++++.+..+
T Consensus 60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~ 139 (331)
T PF07995_consen 60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDN 139 (331)
T ss_dssp CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGG
T ss_pred cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccc
Confidence 23333 32311 23444444332 1111 1122 234456799999997766665432
Q ss_pred ---------cEEEEECCCCc------------eeEEecccCCCeeEEEEcCC-CCEEEEE-EcCCcEEEEECCCC-----
Q 005913 486 ---------TARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHIN-CNYIATG-SSDKTVRLWDVSSG----- 537 (670)
Q Consensus 486 ---------~v~lwd~~~~~------------~~~~~~~~~~~v~~v~~~p~-~~~l~tg-s~dg~I~iwd~~~~----- 537 (670)
.|.-.+.+..- ....+..-......++|+|. |+++++= +.++.=.|--+..|
T Consensus 140 ~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGW 219 (331)
T PF07995_consen 140 AQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGW 219 (331)
T ss_dssp GCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--T
T ss_pred ccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCC
Confidence 23333332110 01111111123457899998 5555441 22222222222211
Q ss_pred ------------------------cEEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCCeeeE---
Q 005913 538 ------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVT--- 583 (670)
Q Consensus 538 ------------------------~~~~~~~~h~~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~~~~~--- 583 (670)
.++..+..| ..+..+.|.. .|.++++.-..+.|....+..+..+.
T Consensus 220 P~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 298 (331)
T PF07995_consen 220 PYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE 298 (331)
T ss_dssp TTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE
Confidence 122333333 5566777764 45577776667788888887554332
Q ss_pred Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 584 PL-MGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 584 ~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
.+ ......+..+++.|||.++++...+|.|.
T Consensus 299 ~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 299 EFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 22 23445899999999999999988888874
No 382
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.89 E-value=0.0018 Score=42.86 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005913 2 DELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (670)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~ 32 (670)
...+++++|++||.+.||..|.+.|.+|+..
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999764
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.019 Score=65.91 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=76.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v 511 (670)
+..++.|+..|.|-..|+...-+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+.++++++.+..|..+++.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 56788899999999888875422 12222346799999999999999999999999999999999999988777776655
Q ss_pred EE---cCCCCEEEEEEcCCcEEEEEC
Q 005913 512 RW---HINCNYIATGSSDKTVRLWDV 534 (670)
Q Consensus 512 ~~---~p~~~~l~tgs~dg~I~iwd~ 534 (670)
-+ ..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 345556888877776 4543
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.85 E-value=0.093 Score=59.38 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=100.2
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCCCEEEEEECCCc-----EEEEECC
Q 005913 426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRT-----ARIWSMD 493 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~dg~-----v~lwd~~ 493 (670)
+++.. ++...++|+.| .++..||..+.+....-.-.. +-..+... -+|...++||.||. +-.||..
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 34444 35667788887 357778887666433211111 11111111 27888999998864 6667765
Q ss_pred CCcee--EEecccCCCeeEEEEcCCCCEEEEEEcCC------cEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEE
Q 005913 494 RIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDK------TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 494 ~~~~~--~~~~~~~~~v~~v~~~p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~I~~l~~sp~g~~l~ 563 (670)
+.+-. ..+......+..+. -+|...++|+.++ ++..||..++.....- ..-..... ...-++...+
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYv 480 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYV 480 (571)
T ss_pred CCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEE
Confidence 54321 11111111222222 3677788887554 5778888876543321 11111111 2223577788
Q ss_pred EEECCCe-----EEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCC
Q 005913 564 SGDEDGT-----IMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTT 620 (670)
Q Consensus 564 sg~~dg~-----I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~ 620 (670)
.||.||. |..||..+.+ .+..+....+.+....+ ++...++|+.|| +|..||-.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 8887763 7778877654 33333333333333333 577888888886 466676554
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.79 E-value=0.68 Score=46.28 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=115.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 422 GPVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
.-..++.|..+|.++-+++.-| .|+.+|+.+++......-. ..---.++... +..+...=.++.+.+||.++.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 3456788877788888887766 7899999999876554422 22222333332 233333346789999999999888
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
..+.- .+.-..++ .++..|+.+.....++.+|..+.+..+.+.... ..+.-+.|- +|...|-.=....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88763 34555565 467777777777789999999888777665332 235556665 6666666667778999
Q ss_pred EeCCCCeeeEEeeC------------C---CcceEEEEEcCCCCEEEEEE
Q 005913 574 WDLASGRCVTPLMG------------H---TSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 574 wDl~~~~~~~~~~~------------h---~~~V~sl~~s~~g~~l~sgs 608 (670)
.|..+|+.+..+.- + ..-...++|.|....|...|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999988776521 1 24578899998766555444
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.02 Score=61.07 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=99.5
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCCC-c-EEEEEecCC
Q 005913 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSSG-E-CVRIFIGHR 547 (670)
Q Consensus 477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~tgs~dg~I~iwd~~~~-~-~~~~~~~h~ 547 (670)
.+.++.....++-.|++.|+.+....-+.. |.-+.+.|+.+ .-+.|-+|..|.-||.|-. + .+....+|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 345556667889999999999988886654 78888887653 2355778899999999832 2 222233332
Q ss_pred ----CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee-EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 548 ----~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~-~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
....|.+-..+| +|++|+.+|.|++||- .+..- ..+.+...+|..+..+.+|.+|+..+ +..+.+.++.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 345666666555 8999999999999996 44433 44667788999999999999887665 5566666653
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.74 E-value=0.81 Score=52.80 Aligned_cols=270 Identities=18% Similarity=0.191 Sum_probs=143.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.|.-..|--|..+|.++..||.+.-|.++....... ..+...-...|+.=-.|+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls------------------------d~Kk~~lGt~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS------------------------DRKKVTLGTQPISLRTFSSK 640 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEc------------------------cccccccCCCCcEEEEEeeC
Confidence 355566666789999999999998887764211110 00111112334444455544
Q ss_pred CC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-EEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecccCC
Q 005913 433 GD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS 506 (670)
Q Consensus 433 ~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~~ 506 (670)
++ .++++ .|.-..+|.-+..-......- ..+.. ..|+. -...++++. .+.+.+..++..+.+ +++.- ..
T Consensus 641 ~~t~vfa~-sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~ 715 (1096)
T KOG1897|consen 641 SRTAVFAL-SDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GE 715 (1096)
T ss_pred CceEEEEe-CCCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CC
Confidence 44 34443 344444554432211111110 00111 11222 123344443 456777776654433 33332 24
Q ss_pred CeeEEEEcCCCCEEEEEEcC--------------CcEEEEECCCCcEEEEEecC-C---CCeEEEEEcCC-CCEEEEEE-
Q 005913 507 DVDCVRWHINCNYIATGSSD--------------KTVRLWDVSSGECVRIFIGH-R---SMILSLAMSPD-GRYMASGD- 566 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~d--------------g~I~iwd~~~~~~~~~~~~h-~---~~I~~l~~sp~-g~~l~sg~- 566 (670)
....+++++....+++.+.. ..++++|-.+.+.+....-. . ..|.++.|..| +.++++|+
T Consensus 716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 56677777755555544321 13666666555444322111 1 13445558777 67777776
Q ss_pred ---------CCCeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913 567 ---------EDGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 635 (670)
Q Consensus 567 ---------~dg~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 635 (670)
..|.|.+|.+..++.+.....+ .+.|.++..- +|++||.- ...|++|+......
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~e------------ 860 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERE------------ 860 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccce------------
Confidence 3588999988775555444333 3556665432 57666654 55899999987632
Q ss_pred cccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..-..+..++..+...-.|..+++|...++
T Consensus 861 ---Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 861 ---LRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred ---ehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 2333456677888888888888888765543
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.72 E-value=0.92 Score=47.85 Aligned_cols=220 Identities=16% Similarity=0.143 Sum_probs=110.2
Q ss_pred EEcCCCCEEEEEe-CCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 428 SFSPLGDFILSSS-ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 428 ~~sp~~~~L~s~s-~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+|.++|+.|+-++ .|| .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5778897666554 344 5667788887766655543333446778898888776667789999999998776666655
Q ss_pred CCCeeEEEEc--CCCCEEEEEEc----------------------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913 505 LSDVDCVRWH--INCNYIATGSS----------------------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 505 ~~~v~~v~~~--p~~~~l~tgs~----------------------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
..-+....|. .++..++..-. ...|.-.|+.+|+....+. ....+..+.|||...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 5555555554 45665543211 1246667888888766655 456788999999655
Q ss_pred EEEE-EEC------CCeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCccccc
Q 005913 561 YMAS-GDE------DGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 561 ~l~s-g~~------dg~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs-----~Dg~I~iwd~~~~~~~~~ 626 (670)
.+++ |-+ |.+|.+.+.. |.....+..|. ..+..=-|.|||..|.--+ .+..|.-+|+.++...
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-- 277 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-- 277 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--
T ss_pred CEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--
Confidence 5444 432 2234444433 33333333332 3344556899988655422 2334555666654321
Q ss_pred cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.+...+ +-..+.-+++|.++|.=+.
T Consensus 278 -----------~~~~~p----~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 278 -----------RLMEMP----WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp -----------EEEEE-----SEEEEEE-TTSSEEEEEE-
T ss_pred -----------EEEeCC----ceeeeEEcCCCCEEEecCC
Confidence 111221 2345556778887765443
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.72 E-value=0.74 Score=49.00 Aligned_cols=234 Identities=11% Similarity=0.075 Sum_probs=108.1
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCC----ceeEEeeC---CC----ccEeEEEEecCCCEEEEEE------CCCcEEEEECC
Q 005913 432 LGDFILSSS-ADTTIRLWSTKLN----ANLVCYKG---HN----YPVWDVQFNPQGHYFASSS------HDRTARIWSMD 493 (670)
Q Consensus 432 ~~~~L~s~s-~Dg~I~lwd~~~~----~~~~~~~~---h~----~~V~~l~~sp~g~~l~s~s------~dg~v~lwd~~ 493 (670)
+.++|+..+ ..+.|+|.|+.+. +..+++.. +. ..-..+..-|+|..++++- .-|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345777666 6788999998843 22333332 10 1122344557888888863 23568888888
Q ss_pred CCceeEEecccC---CCeeEEEEcCCCCEEEEEEc--------------------CCcEEEEECCCCcEEEEEecCC--C
Q 005913 494 RIQPLRIMAGHL---SDVDCVRWHINCNYIATGSS--------------------DKTVRLWDVSSGECVRIFIGHR--S 548 (670)
Q Consensus 494 ~~~~~~~~~~~~---~~v~~v~~~p~~~~l~tgs~--------------------dg~I~iwd~~~~~~~~~~~~h~--~ 548 (670)
+........... .--..+-|+|..+.+++... ..++.+||+.+.+.++++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777666555322 22456778899999988652 3579999999999998886432 2
Q ss_pred CeEEEEEcCC--CCE-EEEEECCCeEEEEeC-CCCe----eeEEeeC-----C------------CcceEEEEEcCCCCE
Q 005913 549 MILSLAMSPD--GRY-MASGDEDGTIMMWDL-ASGR----CVTPLMG-----H------------TSCVWTLAYSCEGSL 603 (670)
Q Consensus 549 ~I~~l~~sp~--g~~-l~sg~~dg~I~iwDl-~~~~----~~~~~~~-----h------------~~~V~sl~~s~~g~~ 603 (670)
....+.|..+ ..+ ++.+.-.++|..|-- ..+. .+..+.. - ..-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3456677554 333 333444555555543 3332 1222211 0 245789999999998
Q ss_pred EEEEE-CCCcEEEEeCCCCccccccccc--cCCcccccccccC--CCCCCeEEEEEecCCcEEEEee
Q 005913 604 LASGS-ADCTVKLWDVTTSTKVLKTEEK--SGTNRLRSLKTLP--TKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 604 l~sgs-~Dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~V~~l~fs~~~~~La~gs 665 (670)
|..+. .+|.|+.||+............ .+........... .-.+...-+..|.||+.|...+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 87776 6899999999886554332211 1100000000111 1123457788999998776543
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=0.92 Score=46.76 Aligned_cols=273 Identities=15% Similarity=0.121 Sum_probs=125.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+....+..+.|..+..-.|+| ..|.| +.....+..-... .......-.-..+++
T Consensus 13 l~t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~----------------------~~~~~~~~~~~l~~I 67 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPV----------------------SLDLDNPFDYHLNSI 67 (302)
T ss_dssp -S-SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE---------------------------S-----EEEEE
T ss_pred cCCCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCcccccc----------------------ccCCCccceeeEEEE
Confidence 3456689999999767777777 44543 4333211100000 000000001235677
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEecc
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMAG 503 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~~ 503 (670)
.|.. ...+++ +..+ +.+...+.+..-..+. .-......+....++...+ ++..|.|+ ...+.++. ......
T Consensus 68 ~f~~-~~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy-~T~DgG~tW~~~~~~ 142 (302)
T PF14870_consen 68 SFDG-NEGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIY-RTTDGGKTWQAVVSE 142 (302)
T ss_dssp EEET-TEEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EE-EESSTTSSEEEEE-S
T ss_pred EecC-CceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEE-EeCCCCCCeeEcccC
Confidence 7764 334444 4455 4444444444333322 1122233444444443333 34444432 22333332 223344
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCCeee
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCV 582 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl-~~~~~~ 582 (670)
..+.+..+..+++|.++++++......-||--...-...-+.....|.+|.|+|++...+++ ..|.|++=+. ......
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 55778888889999999998766666788864332333333456789999999998776654 7888888872 222211
Q ss_pred EE----eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 583 TP----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 583 ~~----~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
.. +....-.+..++|.+++...++|+ .|++ +...+.++ .+........-.+.++.+.|.+..
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk------------tW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK------------TWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS------------S-EE-GGGTTSSS---EEEEEETT
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc------------cceECccccCCCCceEEEEEcCCC
Confidence 11 111223478999998877777655 5544 33333332 122222333345579999998888
Q ss_pred cEEEEee
Q 005913 659 LLFAAGA 665 (670)
Q Consensus 659 ~~La~gs 665 (670)
+-+|.|.
T Consensus 288 ~gf~lG~ 294 (302)
T PF14870_consen 288 KGFVLGQ 294 (302)
T ss_dssp EEEEE-S
T ss_pred ceEEECC
Confidence 8777764
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.71 E-value=0.16 Score=43.43 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=67.9
Q ss_pred eeEEEEcC---C-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 508 VDCVRWHI---N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 508 v~~v~~~p---~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
|+++++.. + .+.|++|+.|..||+|+ ....+..+.. ...|++++-... ..++.+..+|+|-+|+-. ..+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 45555543 2 36899999999999997 4466666654 466888887766 568888999999999853 3333
Q ss_pred EeeCCCcceEEEEEcC-CC---CEEEEEECCCcEEE
Q 005913 584 PLMGHTSCVWTLAYSC-EG---SLLASGSADCTVKL 615 (670)
Q Consensus 584 ~~~~h~~~V~sl~~s~-~g---~~l~sgs~Dg~I~i 615 (670)
+.+.- ..+.++.+.. ++ .-|++|-.+|.|-+
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33322 2355655433 32 36888888888743
No 392
>PHA03098 kelch-like protein; Provisional
Probab=96.70 E-value=0.07 Score=60.29 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=88.7
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCcee
Q 005913 432 LGDFILSSSADT------TIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL 498 (670)
Q Consensus 432 ~~~~L~s~s~Dg------~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~~~ 498 (670)
++..++.|+.++ .+..||..+.+....-.. .......+ .-++..++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 355556665432 467788776554321111 11111112 2267777888765 35677887665422
Q ss_pred EEecccCCC-eeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 005913 499 RIMAGHLSD-VDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED--- 568 (670)
Q Consensus 499 ~~~~~~~~~-v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d--- 568 (670)
..-...... -.+++ .-+++..+.|+.+ ..+..||..+++-...-..........+...++..++.||.+
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 211101011 11122 2356666667632 458889987764432111010100111222356666666643
Q ss_pred -----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913 569 -----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS 621 (670)
Q Consensus 569 -----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~ 621 (670)
..+.+||..+++- +..+.........+.+ ++.+++.||.+ +.|.+||..+.
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899876542 2222211111122222 67777777754 46777876653
No 393
>PRK10115 protease 2; Provisional
Probab=96.70 E-value=1.2 Score=51.91 Aligned_cols=194 Identities=8% Similarity=0.004 Sum_probs=106.7
Q ss_pred cCEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC------CcEEEE
Q 005913 422 GPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW 490 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lw 490 (670)
-.+..+.|+|++++|+.+.. ..+|++.|+.++..+...-.... ..++|+++++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45667899999998875532 23588999987764322111111 459999999877666542 367778
Q ss_pred ECCCC--ceeEEecccCCCee-EEEEcCCCCEEEEEEc---CCcEEEEECC--CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 491 SMDRI--QPLRIMAGHLSDVD-CVRWHINCNYIATGSS---DKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 491 d~~~~--~~~~~~~~~~~~v~-~v~~~p~~~~l~tgs~---dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. ++.....+....+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88777 33445543333333 2233448887766543 3578888853 3443222222222223322 3233333
Q ss_pred EEEE---CCCeEEEEeCCCCeeeEEeeCC-C-cceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 563 ASGD---EDGTIMMWDLASGRCVTPLMGH-T-SCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 563 ~sg~---~dg~I~iwDl~~~~~~~~~~~h-~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
+... ....|...++........+..+ . ..|..+.++ .+.++++...+|.-+++-+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3222 2234555555521222334444 3 367888887 44566777777776666554
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.39 Score=48.16 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=113.0
Q ss_pred eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q 005913 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538 (670)
Q Consensus 460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~ 538 (670)
.+-...+.++.|+|+.+.+++........+|=...|+.++.+. ....+...+.+..++++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999999988888888888888888888876 234567788888888888888888999888776553
Q ss_pred EEEEEe---------cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-e--eEEeeCCC-------cceEEEEEc
Q 005913 539 CVRIFI---------GH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-C--VTPLMGHT-------SCVWTLAYS 598 (670)
Q Consensus 539 ~~~~~~---------~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~--~~~~~~h~-------~~V~sl~~s 598 (670)
.+.... .+ +...-.++|.|....|+.+-+..=+.||....+. . +.....+. ..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 222111 12 4457789999999999888887777777665322 1 11111111 346778888
Q ss_pred C-CCCEEEEEECCCcEEEEeCCCC
Q 005913 599 C-EGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 599 ~-~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
+ .+.+|+-+..++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 6 4556666667777766666543
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=1.2 Score=47.57 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=90.3
Q ss_pred EEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeeCC---CccEeEEEEecCCCEEEEEEC--------------
Q 005913 427 ASFSPLGDFILSSSA------DTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH-------------- 483 (670)
Q Consensus 427 l~~sp~~~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~g~~l~s~s~-------------- 483 (670)
+-.-|+|+.++|+-. -|-+.+.|-++.......... ..--.++-|.|..+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 344568888776532 256888888877777666542 233467788888888888642
Q ss_pred ------CCcEEEEECCCCceeEEecccCC--CeeEEEEc--CCCCEEEEEE-cCCcEEEEEC-CCCcE----EEEEec--
Q 005913 484 ------DRTARIWSMDRIQPLRIMAGHLS--DVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGEC----VRIFIG-- 545 (670)
Q Consensus 484 ------dg~v~lwd~~~~~~~~~~~~~~~--~v~~v~~~--p~~~~l~tgs-~dg~I~iwd~-~~~~~----~~~~~~-- 545 (670)
..++.+||+.+.+.++.+.-... -+..+.|. |+..+=++|+ -.++|..|-- ..++- +..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 46899999999999988874322 34566665 5555555444 3444554433 33321 111111
Q ss_pred ---------------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC---eeeEEee-C---------------CCc
Q 005913 546 ---------------HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG---RCVTPLM-G---------------HTS 590 (670)
Q Consensus 546 ---------------h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~---~~~~~~~-~---------------h~~ 590 (670)
-..-|+.|.+|.|.++|+.++ .+|.|+.||+..- +.+.++. + -.+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 024479999999999998765 6899999999753 2332221 1 112
Q ss_pred ceEEEEEcCCCCEEEEEE
Q 005913 591 CVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 591 ~V~sl~~s~~g~~l~sgs 608 (670)
...-+..|.||+.|...+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 345678888998777654
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.17 Score=50.99 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=95.4
Q ss_pred CeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe-CCCCeee
Q 005913 507 DVDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD-LASGRCV 582 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD-l~~~~~~ 582 (670)
.+...+++++++.++... ....++++.. +....... ....++...|+++|...+....+...+++- ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887765 3344555543 33333322 223688889999988777777666667663 3333222
Q ss_pred -EEeeCC--CcceEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 583 -TPLMGH--TSCVWTLAYSCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 583 -~~~~~h--~~~V~sl~~s~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
...... .+.|.++.+||||..++... .++.|.|--+........ ......+.........+..++|.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~------~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP------RRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc------ceeccceEecccccCcceeeeecC
Confidence 112211 22899999999999877766 357787776654332100 000111222334456899999999
Q ss_pred CCcEEEEeeCCC
Q 005913 657 RNLLFAAGALSK 668 (670)
Q Consensus 657 ~~~~La~gs~dg 668 (670)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 999888876654
No 397
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.59 E-value=1.1 Score=50.42 Aligned_cols=141 Identities=15% Similarity=0.161 Sum_probs=87.1
Q ss_pred cEEEEECCCCceeEEecccCCCee---------EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEE--------Ee-
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINCN---YIATGSSDKTVRLWDVSSGECVRI--------FI- 544 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~---------~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~~~~--------~~- 544 (670)
.|.-.|+++++....++....++. -+....+|+ .++.++.+|.+++.|..+|+.+.. +.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 677778889988877764322221 222334665 778899999999999999988621 10
Q ss_pred --c-CC-CCe----------------------------EEEEEcCCCCEEEEEECC------------------------
Q 005913 545 --G-HR-SMI----------------------------LSLAMSPDGRYMASGDED------------------------ 568 (670)
Q Consensus 545 --~-h~-~~I----------------------------~~l~~sp~g~~l~sg~~d------------------------ 568 (670)
. .. .++ ..++++|+..+++....+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0 00 000 125566665555443322
Q ss_pred ---------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 569 ---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 569 ---------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
|.|.-+|+.+|+.+-+.........+. ..-.+.+++.++.||.++++|..+++.+.+.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 467888888887776554222111121 1124567888888999999999999876544
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.42 Score=47.90 Aligned_cols=166 Identities=11% Similarity=0.173 Sum_probs=113.4
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
|-...|.++.|+|+.+.|++......-.+|=...|..+.++.-. -...-.|.|..+|.+.++--.++.+.++.++....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44556999999999999988887777777766668777765431 22344688888888888888889999888765432
Q ss_pred eEEec---------cc-CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-E--EEEEecCC-------CCeEEEEEcC
Q 005913 498 LRIMA---------GH-LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-------SMILSLAMSP 557 (670)
Q Consensus 498 ~~~~~---------~~-~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-------~~I~~l~~sp 557 (670)
+..+. .+ ......++|.|....|+.+-...-+.||.+..+. . +.....+. ..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 21111 12 4567889999999999998888878887765332 1 11111111 2467788887
Q ss_pred -CCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 558 -DGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 558 -~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
.+..|+.+.+++.+.-.|.. |..+..+
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred CCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 56677778888888888854 4444444
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.55 E-value=0.087 Score=57.26 Aligned_cols=148 Identities=15% Similarity=0.224 Sum_probs=91.7
Q ss_pred cCEEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC----CCEEEEEECCCcEEEEECC-
Q 005913 422 GPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD- 493 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----g~~l~s~s~dg~v~lwd~~- 493 (670)
.+|.+++|. ||+.++ +.- .+|.+++=| ...+ |.-..|..+.|.|- ...+++.-+...|.+|.+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 588999998 565444 332 234333322 1122 23345889999994 3356667788999999874
Q ss_pred ----CCceeEEecccCC-----CeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913 494 ----RIQPLRIMAGHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 494 ----~~~~~~~~~~~~~-----~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~ 563 (670)
+.+.+..-..+.. --..+.|||....|++-+....-.+++++.. ..+..-....+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2333222221111 1246789999998888776665566777643 33333335568899999999999877
Q ss_pred EEE-CCCeEEEEeCC
Q 005913 564 SGD-EDGTIMMWDLA 577 (670)
Q Consensus 564 sg~-~dg~I~iwDl~ 577 (670)
.+- ..=.-++||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 653 34456788853
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.82 Score=44.28 Aligned_cols=135 Identities=13% Similarity=0.229 Sum_probs=86.6
Q ss_pred CccEeEEEEecCCCEEEEEECC---------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEE
Q 005913 463 NYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLW 532 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l~s~s~d---------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iw 532 (670)
.....+-..+|+|+|++-.-.| |.++.|-... .+..+.....--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3445667789999985433222 4444444322 22223333334467889877766554 4556678777
Q ss_pred E--CCCCcE-----EEEEec---CC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 533 D--VSSGEC-----VRIFIG---HR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 533 d--~~~~~~-----~~~~~~---h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
| ..+|.. +..++. .. -....+++.-+|.+.+++-..|+|...|..+|+.+.++.-.+..|+|++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 555542 222221 01 1123455566888888888999999999999999999998899999999954
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.47 E-value=1.1 Score=48.01 Aligned_cols=146 Identities=10% Similarity=0.098 Sum_probs=80.6
Q ss_pred CCEEEEEEcCCCCEEEEEeC-----------CC-cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 352 NGLNCASISQDGSLVAGGFS-----------DS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~-----------dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
.....++|.++|+++++-.. .+ .|.+++-... ++.......+..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------------------------dG~~d~~~vfa~ 69 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG------------------------DGKYDKSNVFAE 69 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------------------------CCCcceeEEeec
Confidence 34678899999998776531 22 5555543210 011112233333
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEE---eeC----CCccEeEEEEecCCCEEEEEECC---
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD--- 484 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~l~~sp~g~~l~s~s~d--- 484 (670)
.-....++++.+++ |++++.....++.+.... +.... +.. +......+.|.|+|.+.++.+..
T Consensus 70 ~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 70 ELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 33456789999888 444444443334454321 11112 211 13347789999999876655421
Q ss_pred ----------------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE
Q 005913 485 ----------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524 (670)
Q Consensus 485 ----------------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs 524 (670)
|.+.-++.++++. ..+.........++|+|+|+.+++-.
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555555443 33333335567899999998877644
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.41 E-value=0.9 Score=53.02 Aligned_cols=195 Identities=11% Similarity=0.087 Sum_probs=119.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc--------EeEEEEec----------------CCCEEEEEECCCcEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR 488 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~l~~sp----------------~g~~l~s~s~dg~v~ 488 (670)
+..|..|+.++.|.-.|..+++.+-.+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556677777788888888888777665532110 12222221 344788899999999
Q ss_pred EEECCCCceeEEecccCCCee-------------EEEEcC--CCCEEEEEEc----------CCcEEEEECCCCcEEEEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~-------------~v~~~p--~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~ 543 (670)
-.|.++++.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|+++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 11111 011112 2345666643 688999999999998776
Q ss_pred ecC---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCeEEEEeCCCCeeeEEeeC
Q 005913 544 IGH---------RS--------MI-LSLAMSPDGRYMASGD------------------EDGTIMMWDLASGRCVTPLMG 587 (670)
Q Consensus 544 ~~h---------~~--------~I-~~l~~sp~g~~l~sg~------------------~dg~I~iwDl~~~~~~~~~~~ 587 (670)
..- .+ .+ ..+++.|....++.+. ..+.|.-.|..+|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 521 00 01 2344555444444322 235677788889988766654
Q ss_pred CCcceEE---------EEEcC-CCC---EEEEEECCCcEEEEeCCCCccccccc
Q 005913 588 HTSCVWT---------LAYSC-EGS---LLASGSADCTVKLWDVTTSTKVLKTE 628 (670)
Q Consensus 588 h~~~V~s---------l~~s~-~g~---~l~sgs~Dg~I~iwd~~~~~~~~~~~ 628 (670)
....++. +.+.. +|+ .++.++.+|.+.+.|-.+++.+...+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2111121 22322 553 79999999999999999988776543
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=1 Score=45.04 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=114.4
Q ss_pred cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEecccC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 005913 465 PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (670)
-...+.|..+|..+-+.+.-| .|+.+|+.+++......-.. ---..++.. ++......-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 345678878888888888666 79999999998776544221 122334443 33444455578999999999999988
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC--C---cceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--T---SCVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 542 ~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h--~---~~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
.+.- .+.=..++ .+|..|+.......|+++|..+.+....+... . ..+.-+.|- +|.+.|-.=....|...
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 8853 34556666 56778888877889999999887766655422 2 234445554 56666666566677777
Q ss_pred eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEe
Q 005913 617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAG 664 (670)
Q Consensus 617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~g 664 (670)
|..++..........-......-........-.+.++|.|.+ .++++|
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 777776543332110000000000011124568899998764 566666
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.015 Score=55.75 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE-EEEEEcCCCCEEEEEeC
Q 005913 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV-YSASFSPLGDFILSSSA 441 (670)
Q Consensus 363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~L~s~s~ 441 (670)
+.-+++|+.+|.|.+|++...+.. ......-...| ..+.--.++.+..+++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~---------------------------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH---------------------------SDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred CceEEeecccceEEEecCCccchH---------------------------HHhhhcccccceeccccccccceeEEecc
Confidence 456889999999999998732110 00011111222 22233334567889999
Q ss_pred CCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 005913 442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR 494 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~--s~dg~v~lwd~~~ 494 (670)
||.|+.|++.-++.+.....|+ .++.....+..+..++++ |.|..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999999999888887777787 666666666667777777 7778888887754
No 405
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.23 E-value=0.8 Score=46.63 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----------
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM---------- 501 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~---------- 501 (670)
.++.|+.|+.+| +.++++.......... +..+|..+...|+-+.+++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 578899999998 9999983332222222 233499999999777766664 499999998765443311
Q ss_pred ----cccCCCeeEEE--EcCCCCEEEEEEcCCcEEEEECCCC-----cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 502 ----AGHLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 502 ----~~~~~~v~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
......+...+ -.+.+...++....+.|.+|..... +..+.+. -...+.+++|. ++.++.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 11222333333 1134444444555668888877643 3445554 34778899998 56777777554
Q ss_pred EEEEeCCCCeeeE
Q 005913 571 IMMWDLASGRCVT 583 (670)
Q Consensus 571 I~iwDl~~~~~~~ 583 (670)
..+.|+.++....
T Consensus 159 f~~idl~~~~~~~ 171 (275)
T PF00780_consen 159 FYLIDLNTGSPSE 171 (275)
T ss_pred eEEEecCCCCceE
Confidence 8889998775543
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.20 E-value=1.6 Score=43.94 Aligned_cols=145 Identities=19% Similarity=0.167 Sum_probs=91.5
Q ss_pred cEeEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEE-CCCCcEE
Q 005913 465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGECV 540 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~s~s---~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd-~~~~~~~ 540 (670)
.+.+.++++++..++... ....++++... ....... ....+..-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999877766 33355555443 3333322 223788889999988777777677777773 3333322
Q ss_pred E--EEecCC-CCeEEEEEcCCCCEEEEEE---CCCeEEEEeCC---CC------eeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913 541 R--IFIGHR-SMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG------RCVTPLMGHTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 541 ~--~~~~h~-~~I~~l~~sp~g~~l~sg~---~dg~I~iwDl~---~~------~~~~~~~~h~~~V~sl~~s~~g~~l~ 605 (670)
. .-.... +.|+.+.+||||..++... .++.|.+=-+. .+ ..+.........+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2 111111 2899999999999887655 45777776543 22 11111223346789999999998877
Q ss_pred EEECCCc
Q 005913 606 SGSADCT 612 (670)
Q Consensus 606 sgs~Dg~ 612 (670)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765543
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.077 Score=56.75 Aligned_cols=134 Identities=16% Similarity=0.247 Sum_probs=92.9
Q ss_pred CCCEEE-EEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE-------EEEEECCCeEEEEeCCCC-e-eeEEe
Q 005913 516 NCNYIA-TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-------MASGDEDGTIMMWDLASG-R-CVTPL 585 (670)
Q Consensus 516 ~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~-------l~sg~~dg~I~iwDl~~~-~-~~~~~ 585 (670)
+.+.|+ .+.....++-.|+..|+.+..+.-+.. |+-+.+.|+.+. =+.|-.|..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455567799999999999999987766 777788886542 234667888999999732 2 23333
Q ss_pred eCCC----cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 586 MGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 586 ~~h~----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
++|. ..-.|.+-. ...++++||.+|.||+||--. . ..-..+|+...+|..|..+.+|.++
T Consensus 423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~-~--------------~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIG-R--------------RAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred eccccccccccceeeec-CCceEEEeecCCcEEeehhhh-h--------------hhhhcccccCCceeeEEeeccCcEE
Confidence 3343 122333333 445899999999999999622 1 1234678889999999999999988
Q ss_pred EEeeC
Q 005913 662 AAGAL 666 (670)
Q Consensus 662 a~gs~ 666 (670)
.+.+.
T Consensus 487 l~Tc~ 491 (644)
T KOG2395|consen 487 LATCK 491 (644)
T ss_pred EEecc
Confidence 76553
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.14 E-value=2.3 Score=45.53 Aligned_cols=142 Identities=8% Similarity=0.076 Sum_probs=80.1
Q ss_pred cCEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCCC--c--eeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 422 GPVYSASFSPLGDFILSSS-----------ADT-TIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s-----------~Dg-~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
.....|+|.++|+++++.. ..+ .|.+++-..+ . ....+-..-.....+++.++| .+ +++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe
Confidence 4456789999999777653 223 6777764322 2 223343333446789999888 44 444443
Q ss_pred cEEEEECCCC-----ceeEE---ecc----cCCCeeEEEEcCCCCEEEEEEcC-------------------CcEEEEEC
Q 005913 486 TARIWSMDRI-----QPLRI---MAG----HLSDVDCVRWHINCNYIATGSSD-------------------KTVRLWDV 534 (670)
Q Consensus 486 ~v~lwd~~~~-----~~~~~---~~~----~~~~v~~v~~~p~~~~l~tgs~d-------------------g~I~iwd~ 534 (670)
..++.|.+.. +.... +.. +......++|.|+|.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 22222 221 12347789999999876654421 44556666
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
.+++....-.++ .....++|+|+|.++++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 554433222233 3356899999998877644
No 409
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.12 E-value=1.8 Score=43.80 Aligned_cols=201 Identities=16% Similarity=0.226 Sum_probs=116.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC-ceeEEeeC-----CCccEeEEEEecCC------------CEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQG------------HYF 478 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~l~~sp~g------------~~l 478 (670)
.-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+... ..|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34789999999888888888999999986 12 22333332 12346677776432 236
Q ss_pred EEEECCCcEEEEECCCCc-----eeEEec-ccCCC-eeEEEEcC--CCCEEEEE-EcCCcEEEEECCCCcEE--EEEecC
Q 005913 479 ASSSHDRTARIWSMDRIQ-----PLRIMA-GHLSD-VDCVRWHI--NCNYIATG-SSDKTVRLWDVSSGECV--RIFIGH 546 (670)
Q Consensus 479 ~s~s~dg~v~lwd~~~~~-----~~~~~~-~~~~~-v~~v~~~p--~~~~l~tg-s~dg~I~iwd~~~~~~~--~~~~~h 546 (670)
+.++.||+|.-|...-.. ....+. ..... -..+++.. .+++|..+ -..++|.++|-.=.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 788899999999843211 112222 11122 33455543 35555544 35788999985422111 011110
Q ss_pred C-----C-----------CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee--CCCcceEEEEEcC------CCC
Q 005913 547 R-----S-----------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSC------EGS 602 (670)
Q Consensus 547 ~-----~-----------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~------~g~ 602 (670)
. . .|+-..-.++++.=+.|..-|.|-+||+ .|+.++++. +.-...|.|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 0 0111111222222223334578999996 577777763 2335667888765 567
Q ss_pred EEEEEECCCcEEEEeCCCCccc
Q 005913 603 LLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+|+---.||+|..||..++.-.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred eEEeecCCceeEEecCCCCcee
Confidence 8888788999999999877643
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.08 E-value=3.4 Score=47.95 Aligned_cols=174 Identities=13% Similarity=0.184 Sum_probs=115.4
Q ss_pred eEEEEeCCCCceeEEeeCC----CccEeEEEEecC-CCEEEEEE----------CCCcEEEEECCCCceeEEecccC--C
Q 005913 444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQ-GHYFASSS----------HDRTARIWSMDRIQPLRIMAGHL--S 506 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~-g~~l~s~s----------~dg~v~lwd~~~~~~~~~~~~~~--~ 506 (670)
.++++|-++.+.+...+-. ...|.++.|..| +.++++|. ..|.|.++.+...+.+.....+. +
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3667776666554433321 123555668777 77888875 24778888776644444443322 2
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--CCeeeEE
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--SGRCVTP 584 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~--~~~~~~~ 584 (670)
.+.++.- -+|+++|. -+..|++|+..+++.++.-..+..++..+...-.|..++.|..-+++.+.-.+ .|.....
T Consensus 831 av~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 3333321 36766665 45689999999998888888899999999999999999999988887766554 3334333
Q ss_pred ee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 585 LM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 585 ~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
-+ -+..+.+++.+- ++..++.+..+|.+.+-..++.
T Consensus 908 ArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred ehhhCccceeeEEEe-cCceEEeecccccEEEEEecCC
Confidence 22 355667777765 4456666778888888777654
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.06 E-value=1.2 Score=50.18 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=118.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEe----------EEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
+..++.++.++.|+-.|..+++.+-.+.... ..+. .+++ .+..++.++.|+.+...|..+++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4566677778888889999888776654311 1111 1122 2346777888999999999999988765
Q ss_pred cccCCC-eeEEEEcC--CCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCC------------------------
Q 005913 502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------ 548 (670)
Q Consensus 502 ~~~~~~-v~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~------------------------ 548 (670)
...... -..+.-+| .+..+++++. +|.|+-+|..+|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 421100 00111112 1234555543 68999999999998866532111
Q ss_pred -------Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEeCCCCeeeEEeeCCCcceEE---------E
Q 005913 549 -------MI-LSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWT---------L 595 (670)
Q Consensus 549 -------~I-~~l~~sp~g~~l~sg~~d-----g-----------~I~iwDl~~~~~~~~~~~h~~~V~s---------l 595 (670)
.+ ..+++.|...+++.+..+ + .|.-.|+++|+..-.++.....++. +
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 11 134666666666665422 2 6778899999988766642222222 2
Q ss_pred EEcCCCC---EEEEEECCCcEEEEeCCCCccc
Q 005913 596 AYSCEGS---LLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 596 ~~s~~g~---~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+..+|+ .++.++.+|.+.+.|-.+++.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2334665 7889999999999999988764
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=96.02 E-value=2.5 Score=44.50 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEE-EECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~i-wd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
...+.++.+.|++.++++|. .|.+.. +|- .++ -..........++++.+.++++.++++ ..|.+++=+...|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999987776664 454443 222 222 222223344678999999999877665 4676654333444322
Q ss_pred EEeeC----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 583 ~~~~~----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
..... ....+.++.+.+++..++ ++.+|.|. .....+. .+..+..........+.+.|..++
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~------------tW~~~~~~~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK------------TWEKDPVGEEVPSNFYKIVFLDPE 314 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC------------CCeECCcCCCCCcceEEEEEeCCC
Confidence 21111 123578899998877555 45567654 3333322 112221111223468889998888
Q ss_pred cEEEEee
Q 005913 659 LLFAAGA 665 (670)
Q Consensus 659 ~~La~gs 665 (670)
..+++|.
T Consensus 315 ~~~~~G~ 321 (334)
T PRK13684 315 KGFVLGQ 321 (334)
T ss_pred ceEEECC
Confidence 8887765
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.00 E-value=0.0029 Score=70.87 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=118.9
Q ss_pred eeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--Cce-----eEEeeCCCccEeEEEEec---CCCEEEEEEC
Q 005913 415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSH 483 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~l~~sp---~g~~l~s~s~ 483 (670)
...+|..|.|-.+.|.... ..++ -.-|...+|++.. |+. +........++.-+.|.| +..++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3456777888888885422 1222 2336788898753 322 222233344556677776 5677888888
Q ss_pred CCcEEEEECCCCceeEEecccCCCeeEEE-----------EcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEEecCC
Q 005913 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVR-----------WHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR 547 (670)
Q Consensus 484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~ 547 (670)
++++++..+++... ..+.+|...+..++ .+|||..+++.+.||.++.|.+. .-.|+.....|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 89999888765433 34445665554433 58999999999999998888764 334556666776
Q ss_pred -CCeEEEEEcCCC---------CEEEEE-ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC------------EE
Q 005913 548 -SMILSLAMSPDG---------RYMASG-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS------------LL 604 (670)
Q Consensus 548 -~~I~~l~~sp~g---------~~l~sg-~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~------------~l 604 (670)
++-.|.-|+.+- .+++++ ..+..+++|....++|+-. .....|..+. -++|. .+
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHH
Confidence 444444444321 234444 4456799999888887721 1122233332 12221 24
Q ss_pred EEEECCCcEEEEeCC
Q 005913 605 ASGSADCTVKLWDVT 619 (670)
Q Consensus 605 ~sgs~Dg~I~iwd~~ 619 (670)
++-+.+++|.+|.-.
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 456677888888643
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.92 E-value=3.1 Score=44.79 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEE-EEEcCC-----------------CCEEE-EE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS-LAMSPD-----------------GRYMA-SG 565 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~-l~~sp~-----------------g~~l~-sg 565 (670)
...+.+++.+|++++.++..+=|.|.++|+.++..++.++|..+.=.. +..... ..+|+ -+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 345788999999999999888899999999999999988876653111 111100 11232 35
Q ss_pred ECCCeEEEEeCCCCeeeEEee
Q 005913 566 DEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~~~ 586 (670)
-..|.|-||++++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 678999999999998877664
No 415
>PHA03098 kelch-like protein; Provisional
Probab=95.84 E-value=0.3 Score=55.22 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=51.4
Q ss_pred CCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC------CeEEEEeCCCCee--
Q 005913 516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED------GTIMMWDLASGRC-- 581 (670)
Q Consensus 516 ~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d------g~I~iwDl~~~~~-- 581 (670)
++..++.|+.+ ..+..||..+++-...-...... -.++ ..-+++..+.||.+ ..+..||..+++-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 56677777755 35778888766533211100011 1112 22356666777632 4588999876532
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCC--------cEEEEeCCCC
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTS 621 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------~I~iwd~~~~ 621 (670)
+..+....... ++ ...++.+++.||.++ .+.+||..+.
T Consensus 421 ~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 421 GSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred cCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 22221111111 12 223566777776432 2677776653
No 416
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.67 Score=46.17 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=96.4
Q ss_pred eEEEEcCCC-CEEEEEEcCCc-EEEEECCCCcEEEEEecCCCC--eEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCC
Q 005913 509 DCVRWHINC-NYIATGSSDKT-VRLWDVSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDE-----DGTIMMWDLASG 579 (670)
Q Consensus 509 ~~v~~~p~~-~~l~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~-----dg~I~iwDl~~~ 579 (670)
..|+|||.. .-++.+-.-|+ ..++|....+...++....+. .-.=.|||||.+|+..-. .|.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777754 34555555554 467888777655444322111 112369999999998644 388999999855
Q ss_pred -eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEE-eCC-------CCccccccccccCCcccccccccC--CCCCC
Q 005913 580 -RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW-DVT-------TSTKVLKTEEKSGTNRLRSLKTLP--TKSTP 648 (670)
Q Consensus 580 -~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw-d~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 648 (670)
..+.++..|.-....+.|.+||+.++.+ +|-|..- |.. +-++....-.. ....+-.-.+++ .+.-+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMePSlvlld~-atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDA-ATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcCccEEEEec-cccchhhhccCchhhhhcc
Confidence 5667788888777899999999998877 4455555 222 11111111000 000011112344 45667
Q ss_pred eEEEEEecCCcEEEEeeCCC
Q 005913 649 VYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs~dg 668 (670)
|..++..++|.+.+.+-+.|
T Consensus 228 iRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeC
Confidence 99999999999988776654
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.69 E-value=0.038 Score=39.61 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAK 382 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~ 382 (670)
...|.+++|+|...+||.|+.+|.|.||.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45699999999999999999999999999853
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.50 E-value=0.6 Score=51.92 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=86.4
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeEE--ecc
Q 005913 433 GDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--MAG 503 (670)
Q Consensus 433 ~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~~--~~~ 503 (670)
+..+++|+.+ .++..||..++.....-.-...........-+|...++||.+ .++..||..+.+-... +..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 4445566543 256678877654332211111111111122367777888754 3577788655432211 111
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
.......+. -+|+..+.|+.++ .+..||..+.+-...-......-...+..-+|+..+.| |.+.+||..+++
T Consensus 352 ~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~ 426 (480)
T PHA02790 352 PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNT 426 (480)
T ss_pred CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCc
Confidence 111112222 3677777777553 47788887654432111000100111123346555655 357788887653
Q ss_pred --eeEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913 581 --CVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS 621 (670)
Q Consensus 581 --~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~ 621 (670)
.+..+.........+. -+|.+.+.||.+ .+|.+||..++
T Consensus 427 W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 427 WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 2333322122222222 367788888765 34667776553
No 419
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=1.1 Score=44.67 Aligned_cols=143 Identities=14% Similarity=0.200 Sum_probs=94.2
Q ss_pred EEEEecC-CCEEEEEECCCc-EEEEECCCCceeEEecccCCC--eeEEEEcCCCCEEEEEEcC-----CcEEEEECCCC-
Q 005913 468 DVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSSD-----KTVRLWDVSSG- 537 (670)
Q Consensus 468 ~l~~sp~-g~~l~s~s~dg~-v~lwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~- 537 (670)
.+.++|. ..-++.+-.-|+ ..++|.+..+....+....+. .-.-.|||+|.+|...-.| |.|-+||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4677773 444555655554 567888776655444322111 1123689999999886543 78999999854
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEeCCCCeeeEEee----CCCcceEEE
Q 005913 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDE------------------DGTIMMWDLASGRCVTPLM----GHTSCVWTL 595 (670)
Q Consensus 538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~------------------dg~I~iwDl~~~~~~~~~~----~h~~~V~sl 595 (670)
+.+..+..|.-....+.+.+||+.++.+.. .-++.+.|..+|..+.+.. .+.-+|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 456677788877889999999999987642 1245566666676654322 244568888
Q ss_pred EEcCCCCEEEEEECC
Q 005913 596 AYSCEGSLLASGSAD 610 (670)
Q Consensus 596 ~~s~~g~~l~sgs~D 610 (670)
+..+||.+++.+-..
T Consensus 232 d~g~dgtvwfgcQy~ 246 (366)
T COG3490 232 DIGRDGTVWFGCQYR 246 (366)
T ss_pred eeCCCCcEEEEEEee
Confidence 888888877766433
No 420
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.48 E-value=3.4 Score=41.97 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=125.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-----cCccCEEEEE
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSAS 428 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~ 428 (670)
-+-++|+|.+.+-++....+...+||........... ....... ...+..+.+.
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~---------------------~L~vtiP~~~~~~~~~~PTGiV 83 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD---------------------PLVVVIPAPPPLAAEGTPTGQV 83 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCcc---------------------ceEEEecCCCCCCCCCCccEEE
Confidence 4678999999888888888999999987321110000 0011111 0123456666
Q ss_pred EcCCCC------------EEEEEeCCCeEEEEeCCCCce-----eEEee-CCCccE-eEEEEec--CCCEEEEE-ECCCc
Q 005913 429 FSPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASS-SHDRT 486 (670)
Q Consensus 429 ~sp~~~------------~L~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~l~~sp--~g~~l~s~-s~dg~ 486 (670)
|+.... .++.+++||+|.-|....... ...+. +....| ..+++.. .+.+|..+ -..++
T Consensus 84 fN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ 163 (336)
T TIGR03118 84 FNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR 163 (336)
T ss_pred EeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence 654322 367788999999998532222 12222 112222 3445443 34555444 36788
Q ss_pred EEEEECCCCcee--EEecc-----cCCC--e---------eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C
Q 005913 487 ARIWSMDRIQPL--RIMAG-----HLSD--V---------DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H 546 (670)
Q Consensus 487 v~lwd~~~~~~~--~~~~~-----~~~~--v---------~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h 546 (670)
|.++|-.-.... ..+.. ...+ | +-..-.++.+.=+.|..-|.|-+||. .|+.++++.. .
T Consensus 164 IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~ 242 (336)
T TIGR03118 164 IDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR 242 (336)
T ss_pred eEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc
Confidence 888875422111 00100 0000 1 01111122222233344578999996 5788887742 2
Q ss_pred CCCeEEEEEcC------CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC------cceEEEEEcC
Q 005913 547 RSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHT------SCVWTLAYSC 599 (670)
Q Consensus 547 ~~~I~~l~~sp------~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~------~~V~sl~~s~ 599 (670)
-..-+.|+..| .|.+|+---.||+|..||..+++.+..+.... ..++.|+|..
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 23456677766 57788887789999999999999888776543 3467788865
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.16 Score=59.09 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=91.7
Q ss_pred cCEEEEEEcCCCCEEE--EEeCCCeEEEEeCCCCcee-----EEeeC------CCccEeEEEEecC-CCEEEEEECCCcE
Q 005913 422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANL-----VCYKG------HNYPVWDVQFNPQ-GHYFASSSHDRTA 487 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~--s~s~Dg~I~lwd~~~~~~~-----~~~~~------h~~~V~~l~~sp~-g~~l~s~s~dg~v 487 (670)
-++..+...+|+...+ ..+.+-.|..||++....- +-+.. ......++.|+|. -..++++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566666677766543 3344457888998754321 11111 1233567889884 3457778889999
Q ss_pred EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec----CCCCeEEEEEcCCCCEEE
Q 005913 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~ 563 (670)
++..+........--.....++|++|+|.|+.+++|-..|++.-|-.. .+..+.+.+ ....|.|++|-....+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998876433322222345678999999999999999999999988753 332222221 146799999987766666
Q ss_pred E
Q 005913 564 S 564 (670)
Q Consensus 564 s 564 (670)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 5
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.34 E-value=4.1 Score=42.07 Aligned_cols=229 Identities=12% Similarity=0.120 Sum_probs=106.7
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eCC---CccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h---~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
-..++.+|.|.....-.++|. .++| +-..+.++.-... ... .....+|.|..+ ..+++| ..+ +.+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 346899999995555566654 4544 2222222221111 111 234667777643 344444 444 44555555
Q ss_pred CceeEEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 495 IQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 495 ~~~~~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
++.-..+. .-......+....++..++ .+..|.|+.=. ..|+. ........+.+..+..+++|++++++..-..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 54433322 1122333333333433333 33445443321 22322 2333455577899999999999988876666
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
..-||-....-...-+.-...|.++.|+|++.+.+.+ ..|.|++=+......... ..+.......-.+.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~----------~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS----------EPIIPIKTNGYGIL 236 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-------------B-TTSS--S-EE
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc----------cccCCcccCceeeE
Confidence 6788854322222222345789999999998776654 888888877222111100 11122223344589
Q ss_pred EEEEecCCcEEEEeeC
Q 005913 651 SLQFSRRNLLFAAGAL 666 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~ 666 (670)
.++|.+++.+.|+|+.
T Consensus 237 d~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEEESSSS-EEEEEST
T ss_pred EEEecCCCCEEEEeCC
Confidence 9999999988887765
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.31 E-value=6.8 Score=45.52 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=57.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
.-.|..+.++|+|++|+..|..| |.|-.+.. +.....+.+....|.|=.+.-+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence 35789999999999999888766 55544432 11122233222233322222111111
Q ss_pred EecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCC
Q 005913 500 IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG 537 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~ 537 (670)
...+...|..+.|||. +..|++-++|+++|+||+...
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456888999986 478889999999999999754
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=3.5 Score=46.53 Aligned_cols=173 Identities=12% Similarity=0.154 Sum_probs=89.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE----eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
+.+-.+.|+.+ ..|++...+|++++|++-.. .+.. .......|..+.+..+|-.+.+ .+|.+.+-.-...-.
T Consensus 84 ~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 84 GELIGMGWSDD-EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK 159 (829)
T ss_pred CCeeeecccCC-ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch
Confidence 47889999965 45666789999999998632 2222 1222334555555556633333 345554443221112
Q ss_pred eEEecc-cCCCeeEEEEc--CCCC---EEEEEE-cCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 498 LRIMAG-HLSDVDCVRWH--INCN---YIATGS-SDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 498 ~~~~~~-~~~~v~~v~~~--p~~~---~l~tgs-~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
.+.+.. ..+...+.+|. +++. .++-.. ..+ .+..-+..+.+... +......+..+..||++++|+.-...|
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~G 238 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTETG 238 (829)
T ss_pred hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecCC
Confidence 222221 11222222332 2211 111110 000 11111112222222 222235688899999999999999999
Q ss_pred eEEEEeCCCCeeeEEee--CCCcceEEEEEcCC
Q 005913 570 TIMMWDLASGRCVTPLM--GHTSCVWTLAYSCE 600 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~~ 600 (670)
.|.+-+....+++..+. .|.- ...++|.-+
T Consensus 239 ~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn 270 (829)
T KOG2280|consen 239 KIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN 270 (829)
T ss_pred cEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence 99999988777666554 2322 225566433
No 425
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.27 E-value=5.1 Score=46.91 Aligned_cols=153 Identities=11% Similarity=0.145 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccE-------------eEEEEec--CCCEEEEEEC----------CCc
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT 486 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~l~~sp--~g~~l~s~s~----------dg~ 486 (670)
++..++.++.|+.+.-.|..+++.+..+.. ++.| ..+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345788888899999999999988866542 1111 0111222 2345666643 688
Q ss_pred EEEEECCCCceeEEeccc---------CC--------Ce-eEEEEcCCCCEEEEEE------------------cCCcEE
Q 005913 487 ARIWSMDRIQPLRIMAGH---------LS--------DV-DCVRWHINCNYIATGS------------------SDKTVR 530 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~---------~~--------~v-~~v~~~p~~~~l~tgs------------------~dg~I~ 530 (670)
|+-+|.++++.+..+..- .+ .+ ..+++.+....++.+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999988765411 00 11 2344555545544422 124577
Q ss_pred EEECCCCcEEEEEecCCCCe---------EEEEEcC-CCC---EEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 531 LWDVSSGECVRIFIGHRSMI---------LSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 531 iwd~~~~~~~~~~~~h~~~I---------~~l~~sp-~g~---~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
-.|..+|+....++.....+ .-+.+.. +|+ .++.++.+|.++++|.++|+.+...
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 78889999888776422111 1122322 563 7889999999999999999887653
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=95.21 E-value=0.72 Score=51.31 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=67.1
Q ss_pred CCCCEEEEEEcC--CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eEEEEeCCCCeee--EEeeC
Q 005913 515 INCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TIMMWDLASGRCV--TPLMG 587 (670)
Q Consensus 515 p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~I~iwDl~~~~~~--~~~~~ 587 (670)
-++...++|+.+ ..+..||..+++-...-.-........+..-+|+..+.||.++ .+..||..+.+-. ..+..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 366677777754 4578888766543321111111111112223577777777553 4678887765322 12211
Q ss_pred CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.......+ .-+|.+.+.|+ .+.+||..+. .|..+..++........+ .-+|++.++|+.+
T Consensus 397 ~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~-------------~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~ 456 (480)
T PHA02790 397 PHYKSCAL--VFGRRLFLVGR---NAEFYCESSN-------------TWTLIDDPIYPRDNPELI--IVDNKLLLIGGFY 456 (480)
T ss_pred ccccceEE--EECCEEEEECC---ceEEecCCCC-------------cEeEcCCCCCCccccEEE--EECCEEEEECCcC
Confidence 11111112 23566666664 4677876542 234444443333233222 3477888888865
Q ss_pred C
Q 005913 668 K 668 (670)
Q Consensus 668 g 668 (670)
+
T Consensus 457 ~ 457 (480)
T PHA02790 457 R 457 (480)
T ss_pred C
Confidence 3
No 427
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.12 E-value=0.072 Score=38.18 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.5
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK 451 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~ 451 (670)
...|.+++|+|..++||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999984
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.02 E-value=0.72 Score=50.46 Aligned_cols=149 Identities=12% Similarity=0.225 Sum_probs=91.5
Q ss_pred CccEeEEEEecCCCEE-EEEE--CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCC----CEEEEEEcCCcEEEEECC
Q 005913 463 NYPVWDVQFNPQGHYF-ASSS--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC----NYIATGSSDKTVRLWDVS 535 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l-~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~----~~l~tgs~dg~I~iwd~~ 535 (670)
-.|+..++|. ||+.+ ++.- .+|.+++=|. ..-|....|..+.|.|-+ ..+++....+.|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899998 55544 4432 3343333322 123455678999999853 356666678899999885
Q ss_pred -----CCcEEEEEecC-CC--C--eEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEE
Q 005913 536 -----SGECVRIFIGH-RS--M--ILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLL 604 (670)
Q Consensus 536 -----~~~~~~~~~~h-~~--~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l 604 (670)
+++.+..-..+ .. + -..+.|+|....|+.-..+..-.+++.+.. ..++.--...+-|.+.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 22222221111 11 1 245679999988888776666566776543 2333222456789999999999988
Q ss_pred EEEECC-CcEEEEeCC
Q 005913 605 ASGSAD-CTVKLWDVT 619 (670)
Q Consensus 605 ~sgs~D-g~I~iwd~~ 619 (670)
+.+-.. =.-+|||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 776443 245688743
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.88 E-value=2.7 Score=44.31 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=85.9
Q ss_pred CccEeEEEEecCCCEEEEEECCCcEEE-EECCCCc-eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE
Q 005913 463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV 540 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l~s~s~dg~v~l-wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~ 540 (670)
...+.++.+.|++.+++++. .|.+.. ++ +.++ -..........+.++.+.++++.+++| ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999887665554 454432 22 2222 122223344678899999999887776 4576654333344332
Q ss_pred EEEec----CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCCcE
Q 005913 541 RIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 541 ~~~~~----h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
..... ....+..+.+.|++..++ ++.+|.|. .....|+.-.... .-....+.+.|..++..++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 21111 123478899999877555 44567554 3444444333332 2223577788876665544 5567888
Q ss_pred EEEe
Q 005913 614 KLWD 617 (670)
Q Consensus 614 ~iwd 617 (670)
--|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 7765
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.26 Score=57.36 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=89.7
Q ss_pred ccEeEEEEecCCCEEEEE--ECCCcEEEEECCCCceeE-----Eec------ccCCCeeEEEEcCCCC-EEEEEEcCCcE
Q 005913 464 YPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IMA------GHLSDVDCVRWHINCN-YIATGSSDKTV 529 (670)
Q Consensus 464 ~~V~~l~~sp~g~~l~s~--s~dg~v~lwd~~~~~~~~-----~~~------~~~~~v~~v~~~p~~~-~l~tgs~dg~I 529 (670)
.+|..+...+|+...++. +.+-.|..||++.....+ .+. .......|+.|+|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667776654443 344478899987532211 111 1233467889988643 35566789999
Q ss_pred EEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC----CCcceEEEEEcCCCCEE
Q 005913 530 RLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG----HTSCVWTLAYSCEGSLL 604 (670)
Q Consensus 530 ~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~----h~~~V~sl~~s~~g~~l 604 (670)
++..+..... +..+ .-....+|++|+|.|+.++.|...|++.-|-.. ++....+.. ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887653322 2222 344568999999999999999999999988753 333333322 13679999997665555
Q ss_pred EE
Q 005913 605 AS 606 (670)
Q Consensus 605 ~s 606 (670)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 431
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.25 Score=50.73 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 005913 3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS 81 (670)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 81 (670)
...++++|.+||-+.||..|-..|-+++.+..-. ...+. .--.|.+.|. ...+.-.-.|+...
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlv----D~Dv~~~~~~I~~sll------------~~~l~~~Lswc~eh 178 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLV----DSDVYKRAYGIRDSLL------------AGELEPALSWCKEH 178 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhH----hHHHHHHHHHHHHHHH------------hcchHHHHHHHHHH
Confidence 3568999999999999999999999888764320 00000 0001122221 12245567788766
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhccCHHHHHhh-cCceEE
Q 005913 82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR-HSKVNI 160 (670)
Q Consensus 82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~k~~v 160 (670)
=-..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|..||+.+.+...-- .|- ..||..
T Consensus 179 k~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~---------~~t~~sky~~ 249 (389)
T KOG0396|consen 179 KVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFP---------KYTSSSKYLN 249 (389)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCc---------cccCcccccC
Confidence 5555555566778888899999999999999999999999999889999999876654100 111 355777
Q ss_pred EEchhhHHHHH-HHHhh
Q 005913 161 KICQYSYELLL-QYLHK 176 (670)
Q Consensus 161 ~~~~~~~~~l~-~~l~~ 176 (670)
-++..-++-|- .|+++
T Consensus 250 l~~~~rw~~l~~lF~s~ 266 (389)
T KOG0396|consen 250 LLTADRWSVLADLFLSE 266 (389)
T ss_pred cccHHHHHHHHHHhhHH
Confidence 77777777665 35544
No 432
>PLN02153 epithiospecifier protein
Probab=94.51 E-value=6.1 Score=41.69 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEE--ecc---cCCCeeEEEEcCCCCEEEEEEcC-----------CcEEEE
Q 005913 474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSDVDCVRWHINCNYIATGSSD-----------KTVRLW 532 (670)
Q Consensus 474 ~g~~l~s~s~d-----g~v~lwd~~~~~~~~~--~~~---~~~~v~~v~~~p~~~~l~tgs~d-----------g~I~iw 532 (670)
++..++.|+.+ ..+.+||..+.+-... +.. ........+..-+++.++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56667777653 3577888776432221 100 11111111122355666666643 247788
Q ss_pred ECCCCcE
Q 005913 533 DVSSGEC 539 (670)
Q Consensus 533 d~~~~~~ 539 (670)
|..+.+-
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 8876644
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.40 E-value=7.8 Score=40.75 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=114.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEe----eCCCccEeEEEEecC----CCEEEEEECC-------
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCY----KGHNYPVWDVQFNPQ----GHYFASSSHD------- 484 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~----~~h~~~V~~l~~sp~----g~~l~s~s~d------- 484 (670)
..++|+|.|+|+.+++ ...|.|++++. .+.. +... .........++++|+ +...++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 55999999993 3332 2222 123456789999994 4333333321
Q ss_pred -CcEEEEECCCC-------cee-EEecc---cCCCeeEEEEcCCCCEEEEEEcCC-------------cEEEEECCCCcE
Q 005913 485 -RTARIWSMDRI-------QPL-RIMAG---HLSDVDCVRWHINCNYIATGSSDK-------------TVRLWDVSSGEC 539 (670)
Q Consensus 485 -g~v~lwd~~~~-------~~~-~~~~~---~~~~v~~v~~~p~~~~l~tgs~dg-------------~I~iwd~~~~~~ 539 (670)
..|.-|..... +.+ ..+.. .......++|.|+|.+.++.+..+ .|.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444332 111 11122 223456799999997666654332 23223322 110
Q ss_pred -------------EEE-EecCCCCeEEEEEcCC-CCEEEE-EECCCeEEEEeCCCC------------------------
Q 005913 540 -------------VRI-FIGHRSMILSLAMSPD-GRYMAS-GDEDGTIMMWDLASG------------------------ 579 (670)
Q Consensus 540 -------------~~~-~~~h~~~I~~l~~sp~-g~~l~s-g~~dg~I~iwDl~~~------------------------ 579 (670)
... -.++.. ...++|+|. |.++++ .+.++.=.|--+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 011 123322 457999998 665554 223322222212111
Q ss_pred -----eeeEEeeCCCcceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913 580 -----RCVTPLMGHTSCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST 647 (670)
Q Consensus 580 -----~~~~~~~~h~~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (670)
.++..+..| ..+..+.|.. .|.++++.-..+.|....+......... ...+.....
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~ 306 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE-----------EEFLGGFGG 306 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-----------EEECTTSSS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce-----------EEccccCCC
Confidence 122223333 4566677653 4456666666667777777544322111 111234444
Q ss_pred CeEEEEEecCCcEEEEeeCCCC
Q 005913 648 PVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 648 ~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+..+++.|||.++++-..+|.
T Consensus 307 r~~~v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 307 RPRDVAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp -EEEEEEETTSEEEEEE-TTTT
T ss_pred CceEEEEcCCCeEEEEECCCCe
Confidence 7999999999999888776664
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.33 E-value=2.3 Score=48.59 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=98.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
-.+..+|+.= .++|+++ ..+.|.||+............. .............+. ...... -...|+.|..
T Consensus 39 fKNNLtalsq---~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~--~~~~t~p~~~~~~D~---~~s~~p-~PHtIN~i~v 108 (717)
T PF08728_consen 39 FKNNLTALSQ---RNLLFIA-YQSEIYVYDPDGLTQLPSRKPC--LRFDTKPEFTSTPDR---LISTWP-FPHTINFIKV 108 (717)
T ss_pred cccceeEEec---CCEEEEE-ECCEEEEEecCCcccccccccc--cccccCccccccccc---cccCCC-CCceeeEEEe
Confidence 3444555543 7788887 4789999998764331110000 000000000000000 011011 2234555544
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCC-------C----c---------eeEEeeCCCccEeEEEEe--cCCCEEEEEECCC
Q 005913 430 SP--LGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDR 485 (670)
Q Consensus 430 sp--~~~~L~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--p~g~~l~s~s~dg 485 (670)
.. +...|+.|..||.|.+|.+++ . . +...+. -...+|+++++ ...+++|+++...
T Consensus 109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCc
Confidence 33 445799999999999997531 0 0 112222 24579999999 7888888888888
Q ss_pred cEEEEECCCC--c-eeEEecccCCCeeEEEEcCCC-----C-EEEEEEcCCcEEEEEC
Q 005913 486 TARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC-----N-YIATGSSDKTVRLWDV 534 (670)
Q Consensus 486 ~v~lwd~~~~--~-~~~~~~~~~~~v~~v~~~p~~-----~-~l~tgs~dg~I~iwd~ 534 (670)
.|.||-+... + ....-..+...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888765431 1 111111356678999997543 2 7888889999999887
No 435
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.05 E-value=3.1 Score=40.45 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=80.2
Q ss_pred EEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCcEEEEE--C
Q 005913 425 YSASFSPLGDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS--M 492 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd--~ 492 (670)
+.-..+|+|++.+-.-. .|.++.|-.. ..+..+...-.--..++|+.+.+.|. +-+.+-+|.-|| +
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 33456788887432221 2344444432 12222222222234678887666554 445667787787 4
Q ss_pred CCCc-----eeEEecc----cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913 493 DRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (670)
Q Consensus 493 ~~~~-----~~~~~~~----~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 557 (670)
.++. .+..+.. ..-....++...+|+..++.-..++|...|..+|+.+..+.-....|+|++|--
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4432 2222221 111233455567899999999999999999999999999988889999999963
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=93.99 E-value=0.13 Score=49.81 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhc
Q 005913 2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS 80 (670)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 80 (670)
..+|+|++|++||---||..+-+.|..|+....+...+. -+.+- .|...| . -.+...|..++.+---.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~---~~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLD---SMDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE 93 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchh---hHhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence 568999999999999999999999999988765311110 00000 111111 1 11344555555443322
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH---hhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 005913 81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157 (670)
Q Consensus 81 ~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k 157 (670)
-||.-+ .|.|=+-..-+++||..|..++|-.|+..--.-+. ..+.+.+++.-.+---+.-+..|.+. +-...
T Consensus 94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s 168 (228)
T KOG2659|consen 94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS 168 (228)
T ss_pred HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence 233222 26777777889999999999999999988655542 13556666533332112223344444 44566
Q ss_pred eEEEEchhhHHHHHHHHhhCCcchHhHhh
Q 005913 158 VNIKICQYSYELLLQYLHKTQSTKMLGII 186 (670)
Q Consensus 158 ~~v~~~~~~~~~l~~~l~~~~~~~~~~i~ 186 (670)
|+-++....-.-++.+.+......+..|+
T Consensus 169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll 197 (228)
T KOG2659|consen 169 LRQKVASEVNSAILASQEHESEPKLPFLL 197 (228)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 67777777777777777766555666665
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.98 E-value=0.049 Score=61.49 Aligned_cols=179 Identities=19% Similarity=0.220 Sum_probs=104.9
Q ss_pred CCeEEEEeCCCCc-eeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCC--Cce-----eEEecccCCCeeEEE
Q 005913 442 DTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR--IQP-----LRIMAGHLSDVDCVR 512 (670)
Q Consensus 442 Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~--~~~-----~~~~~~~~~~v~~v~ 512 (670)
.+-|++-+..+.- .....++..+.|-++.|.. +...+. -.-|.+.+|+++- |+. +.......+++.-|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 3446666544321 1123445566777777743 111111 2236788998763 322 223334445666677
Q ss_pred EcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEE-----------EcCCCCEEEEEECCCeEEEEeCC-
Q 005913 513 WHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-----------MSPDGRYMASGDEDGTIMMWDLA- 577 (670)
Q Consensus 513 ~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~-----------~sp~g~~l~sg~~dg~I~iwDl~- 577 (670)
|.| +.-++.++-.++.|++....+... ..+.+|...++.++ .||||..+++++.||.+++|.+-
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 764 667888888899999877654332 34455665554433 69999999999999998888653
Q ss_pred ----CCeeeEEeeCCCc-ceEEEEEcCCC---------CEEEEEEC-CCcEEEEeCCCCcc
Q 005913 578 ----SGRCVTPLMGHTS-CVWTLAYSCEG---------SLLASGSA-DCTVKLWDVTTSTK 623 (670)
Q Consensus 578 ----~~~~~~~~~~h~~-~V~sl~~s~~g---------~~l~sgs~-Dg~I~iwd~~~~~~ 623 (670)
.-+|+...+.|.+ +-.|.-++.+. .++++++. +..+++|....-+.
T Consensus 267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 3356667777773 32222233211 24455543 45688998665444
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=1.6 Score=49.41 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=73.0
Q ss_pred cEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEc--CCCCEEEEEEcCCcEEEEECC-----C
Q 005913 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S 536 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~--p~~~~l~tgs~dg~I~iwd~~-----~ 536 (670)
...-+.-+.-+..-++-+...++.|||.+.+.....-. ...+.|.++.|. |+|+.+++.+-.+.|.+|.-. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455545444444445689999998876443222 346789999996 789999988889999998542 1
Q ss_pred ----CcEEEEE--ecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 537 ----GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 537 ----~~~~~~~--~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
...++.+ ..|+ .+|.+..|.++|..++.+| +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1223322 2343 5799999999997766554 56888874
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=2.8 Score=50.56 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+..++.+..+...+.. +.+..-+.+-+|+.........+..... .++.++..++++..||.+.+||+..+..
T Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCce
Confidence 3444555554443333 3344556777777655443333322111 1278899999999999999999998754
No 440
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.54 E-value=9.2 Score=40.40 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=12.6
Q ss_pred EEEecCCcEEEEeeCCC
Q 005913 652 LQFSRRNLLFAAGALSK 668 (670)
Q Consensus 652 l~fs~~~~~La~gs~dg 668 (670)
.+..-++.++++|+.+.
T Consensus 316 ~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 316 VSVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEEcCCEEEEEeccCC
Confidence 34566888999998764
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.33 E-value=14 Score=39.90 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=80.8
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-----ee
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----CV 582 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-----~~ 582 (670)
...+...+++.++++|.....++-||-....-...-......++++.+.++|..++++ ..|.+. |....+. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445567888877777655444455532211122223345678999999999887766 455543 3334443 22
Q ss_pred EEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913 583 TPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 583 ~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~ 660 (670)
..... ....+.++.|.+++..++ ++..|.+.... ..++ .+.....-..-..+++.+.|.+++..
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~------------tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK------------SWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc------------ceeEccccCCCCcceeEEEEcCCCce
Confidence 22221 123588999998876554 55677666553 2222 11111111223457899999998888
Q ss_pred EEEee
Q 005913 661 FAAGA 665 (670)
Q Consensus 661 La~gs 665 (670)
+++|.
T Consensus 385 ~~~G~ 389 (398)
T PLN00033 385 FVLGN 389 (398)
T ss_pred EEEeC
Confidence 88764
No 442
>PLN02193 nitrile-specifier protein
Probab=93.31 E-value=15 Score=40.82 Aligned_cols=144 Identities=9% Similarity=0.026 Sum_probs=70.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEecc---cCCC-eeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcE
Q 005913 474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG---HLSD-VDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC 539 (670)
Q Consensus 474 ~g~~l~s~s~d-----g~v~lwd~~~~~~~~~~~~---~~~~-v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~ 539 (670)
++..++.|+.+ ..+..||+.+.+-...-.. .... -.+++. -+++.++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 55666777654 3577888876543221111 0011 112222 2556666666543 467788776543
Q ss_pred EEEEe-----cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCeeeEE--ee-CCC-cceEEEEEcCCCCEEEE
Q 005913 540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRCVTP--LM-GHT-SCVWTLAYSCEGSLLAS 606 (670)
Q Consensus 540 ~~~~~-----~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~~~~~~--~~-~h~-~~V~sl~~s~~g~~l~s 606 (670)
...-. ...... +++ .-+++.++.++.+ ..+.+||+.+.+-... +. ... ....+++ .-++++++.
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~ 383 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIF 383 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEE
Confidence 32111 001111 122 2256777777655 4589999887643221 10 011 1111222 235677777
Q ss_pred EECC--------------CcEEEEeCCCC
Q 005913 607 GSAD--------------CTVKLWDVTTS 621 (670)
Q Consensus 607 gs~D--------------g~I~iwd~~~~ 621 (670)
|+.+ +.+.+||..+.
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcC
Confidence 7753 24677776653
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.31 E-value=1.8 Score=49.01 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=71.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEc--CCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYS--CEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s--~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
..++-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|..+.|. |+|+.+.+.|..+.|.+|--....-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 345555566656555555556789999999887544332 346789999984 68999999999999999864321100
Q ss_pred cccccccCCccccccccc---CCCCCCeEEEEEecCCcEEEEee
Q 005913 625 LKTEEKSGTNRLRSLKTL---PTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~fs~~~~~La~gs 665 (670)
.....+..+..+ .....+|.+..|.++|.++++++
T Consensus 110 ------~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 110 ------NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred ------cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 011111222211 12235799999999998776554
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.92 E-value=1.5 Score=47.14 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCE-EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCC-CcEEEEEe
Q 005913 474 QGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSS-GECVRIFI 544 (670)
Q Consensus 474 ~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~tgs~dg~I~iwd~~~-~~~~~~~~ 544 (670)
+... +..|+....++-.|++.|+.+.....|... -+.|.|... .-++|-++..|.-.|.+- |..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3444 344556678888899999999888877544 577777432 234566677777777763 33332221
Q ss_pred cCCCCeEEEEEcC----CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 545 GHRSMILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 545 ~h~~~I~~l~~sp----~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
.....+.-.||. ...++|+|+..|-|++||.-..+.-..+.+....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 122222223332 3459999999999999996444444445667788999999999998776664 467777764
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.57 E-value=6.3 Score=38.12 Aligned_cols=102 Identities=14% Similarity=0.288 Sum_probs=64.7
Q ss_pred CEEEEEeCCCeEEEEeCCCC--ceeEEeeCCCccEeEEEEecCCCEEEEEECC---C---cEEEE-ECC----CCceeE-
Q 005913 434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW-SMD----RIQPLR- 499 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---g---~v~lw-d~~----~~~~~~- 499 (670)
+.|+.+...+.|.+|++... .....+.. -+.|..+.++..|.|++|--.+ . .+|+| +++ ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 55555566678999999833 33455554 3789999999999999996322 2 56765 222 223332
Q ss_pred Eeccc---------------------CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913 500 IMAGH---------------------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537 (670)
Q Consensus 500 ~~~~~---------------------~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~ 537 (670)
.+.|| ...+.|++..|...-|++|+ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22221 23567888887655566665 567889987643
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.48 E-value=4.4 Score=47.01 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=58.6
Q ss_pred CccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 005913 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (670)
...|..|.++|+|++++..|..| |.|..+-. ......+.+....|.|-.+.-+..++ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~------------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T------------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c-------------------
Confidence 45688899999999999888754 44444421 11112233333344443332221111 1
Q ss_pred EEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEeCCCC
Q 005913 542 IFIGHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 542 ~~~~h~~~I~~l~~sp~---g~~l~sg~~dg~I~iwDl~~~ 579 (670)
..+...|..+.|+|. +..|+.-+.|+.+++||+...
T Consensus 143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456888999995 589999999999999999754
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=13 Score=37.49 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=138.3
Q ss_pred ccceecCCCCCC-ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 329 ~~~~~l~~~~~p-s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
+..+++-..+.| +.....+.+..+--.|+..| |++..++.-|--.-+.|+.......
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~-------------------- 162 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ-------------------- 162 (370)
T ss_pred CCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce--------------------
Confidence 334444444444 33444566665556666666 7777777655556678877532211
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCC
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
..-.+....+.-..++.| |++-..+..|+-+.+.|+.......-... ....+.++..+++..+++.. +-
T Consensus 163 -----lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 163 -----LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred -----eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 111222233333556666 78877888899999999986544332221 12257777777776665554 34
Q ss_pred cEEEEECCCCceeEEecc-cCCCeeEE-EEcCCCCEEEEEEcCCcEEEEECCCCcEEEE---EecCCCCeEEEEEcCCCC
Q 005913 486 TARIWSMDRIQPLRIMAG-HLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~-~~~~v~~v-~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~ 560 (670)
-+.+-|.++.+....+.. ....+.|+ .+.-.+++......+.-+-+.|+.+...... +......-..+..+ |.
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~ 311 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN 311 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC
Confidence 577778777664444431 11222222 3334566666666666677777664332211 11111122333333 44
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
++..+..+ ...+-|...-+.+....+....+.+++.+-+.+.+.+...++-+.||+..
T Consensus 312 y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 312 YNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 44444443 34444544333332222333334455555566688888899999999853
No 448
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.42 E-value=15 Score=39.36 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=10.5
Q ss_pred EEecCCcEEEEeeCCC
Q 005913 653 QFSRRNLLFAAGALSK 668 (670)
Q Consensus 653 ~fs~~~~~La~gs~dg 668 (670)
+..-++.++++|+...
T Consensus 339 av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 339 SVSWNNGVLLIGGETA 354 (376)
T ss_pred EEEeCCEEEEEcCCCC
Confidence 4455677888887643
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.36 E-value=6 Score=42.71 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=89.2
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-------CEEEEEECCCcEEEEECCC-CceeEEec
Q 005913 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-------HYFASSSHDRTARIWSMDR-IQPLRIMA 502 (670)
Q Consensus 432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-------~~l~s~s~dg~v~lwd~~~-~~~~~~~~ 502 (670)
+..+|+ .|..-..++-.|++.|+.+.....|..- -+.|.|+. ..-++|-.+..|.-.|.+- +..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344443 4555566777788888888888877654 47777742 1234455556666666542 22221111
Q ss_pred ----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 503 ----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 503 ----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
.......|.. ...+.|+++++..|-|++||--..+....+.+-...|-.+..+.+|.++++.+ ...+.+-|++
T Consensus 556 sKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 0112222322 23456999999999999999655444445566677899999999999887665 4578888864
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=5.9 Score=37.92 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=92.9
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCCcEEEEECCCCceeEEecccCCCe
Q 005913 432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 432 ~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg~v~lwd~~~~~~~~~~~~~~~~v 508 (670)
+|.++.+.+. ...|++||+.+++.+..-+-....+..=-...-|.+|.. .-.+|....+|.++.+.+..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4455555554 346999999988776544322111111001111222222 23678889999888777765542 2333
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCe---EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMI---LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I---~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
..++ .++..|+.++...+++.-|..+......... ...+| .-+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 3333 3555576666566777777665443332221 11222 223332 45555555555666667777777665
Q ss_pred Eee------------CCCcceEEEEEcCCC-CEEEEE
Q 005913 584 PLM------------GHTSCVWTLAYSCEG-SLLASG 607 (670)
Q Consensus 584 ~~~------------~h~~~V~sl~~s~~g-~~l~sg 607 (670)
.+. .|......+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 442 234556788998877 455555
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=20 Score=38.36 Aligned_cols=118 Identities=12% Similarity=0.162 Sum_probs=79.5
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
...|+|.++.||+|.+.||+--.+.+|.+++....+.. ...+..+..|....|+.. .-+|..+..| +-+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 35579999999999999999999999999998543322 223334556889999866 4455554433 55665432
Q ss_pred -CceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCc
Q 005913 495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGE 538 (670)
Q Consensus 495 -~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~ 538 (670)
...++..+.|...|+-..|.++.+.++.++. .+++.=+-++++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 3355666778888999999998886655443 3344334444443
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.71 E-value=0.07 Score=56.59 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=91.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEE
Q 005913 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL 437 (670)
Q Consensus 358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~ 437 (670)
.|-+.+.-++.++.+-.+..||-.. ....-...++....++|..+++.++
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag------------------------------q~~le~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG------------------------------QVILELNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc------------------------------ceecccCCchhHhhhhhccccchhh
Confidence 4556665688888888888888543 1111112345666788888887544
Q ss_pred -EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC
Q 005913 438 -SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516 (670)
Q Consensus 438 -s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~ 516 (670)
.+-..+.+.+||+.+......-.+.+..-.-+.|++.+..++.+...|.+.+++..+...+-.+-.|...+.+++|.+.
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 4556789999999865332221222222223789998888999989999999998776555555458899999999887
Q ss_pred CCEEEE
Q 005913 517 CNYIAT 522 (670)
Q Consensus 517 ~~~l~t 522 (670)
+..+..
T Consensus 171 d~vil~ 176 (615)
T KOG2247|consen 171 DYVILC 176 (615)
T ss_pred ceeeec
Confidence 654443
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.67 E-value=6.2 Score=45.22 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=90.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeE------Eee----------------CCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~l~~sp--~g~~l~s~s~dg~v~ 488 (670)
.++++++. .+.|.||+...-.... .+. .....|.-+.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666665 5789999876432211 110 0112244444433 456788999999999
Q ss_pred EEECCC-------C-------------ceeEEecccCCCeeEEEEc--CCCCEEEEEEcCCcEEEEECCCC--cEE-EEE
Q 005913 489 IWSMDR-------I-------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--ECV-RIF 543 (670)
Q Consensus 489 lwd~~~-------~-------------~~~~~~~~~~~~v~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~--~~~-~~~ 543 (670)
+|.+++ . +|...+. -...+..+++| ...++||+++....|.+|-.... +.. ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 0 1222222 23468889998 88899999998888888755431 111 111
Q ss_pred ecCCCCeEEEEEcCCC-----C-EEEEEECCCeEEEEeC
Q 005913 544 IGHRSMILSLAMSPDG-----R-YMASGDEDGTIMMWDL 576 (670)
Q Consensus 544 ~~h~~~I~~l~~sp~g-----~-~l~sg~~dg~I~iwDl 576 (670)
..|...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1355678999997743 2 7888999999999988
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.29 E-value=18 Score=37.09 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred cEEEEECCCCceeEEec------ccCCCeeEEEEcCCCC------EEEEEEcCCcEEEEECCCCcEEEEEe---------
Q 005913 486 TARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCN------YIATGSSDKTVRLWDVSSGECVRIFI--------- 544 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~------~~~~~v~~v~~~p~~~------~l~tgs~dg~I~iwd~~~~~~~~~~~--------- 544 (670)
.|.+||+.+.+.++.+. ...+.+..+.+..... ..++=+..+-|.++|+.+++.-+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ----------cCCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCC--------------CeeeEEeeCCCcceEEEEE
Q 005913 545 ----------GHRSMILSLAMSP---DGRYMASGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAY 597 (670)
Q Consensus 545 ----------~h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~--------------~~~~~~~~~h~~~V~sl~~ 597 (670)
.....+..++.+| +|++|+-+...+ -++|.+.+ ...+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec--CCcEEEEee
Q 005913 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR--RNLLFAAGA 665 (670)
Q Consensus 598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~--~~~~La~gs 665 (670)
+++|.++++--..+.|..|+.......... ..+..-+..-..+.++++.+ +|.+.+...
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~---------~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENF---------EILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCE---------EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccch---------heeEEcCceeeccceeeeccccCceEEEEEC
No 455
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.07 E-value=22 Score=37.23 Aligned_cols=156 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred ccEeEEEEecCCCEEEEEECCCc------EEEEECCC----CceeE-----Eeccc--------CCCeeEEEEcCCCCEE
Q 005913 464 YPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLR-----IMAGH--------LSDVDCVRWHINCNYI 520 (670)
Q Consensus 464 ~~V~~l~~sp~g~~l~s~s~dg~------v~lwd~~~----~~~~~-----~~~~~--------~~~v~~v~~~p~~~~l 520 (670)
+.+..+.+.+++..+++.+.+|. +..+++.. ...+. .+... .-+..++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34667888865556666666666 55555432 11111 11111 1155688887788887
Q ss_pred EEEEcC------CcEEEEECCCCcEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEEC-----CC-----
Q 005913 521 ATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGDE-----DG----- 569 (670)
Q Consensus 521 ~tgs~d------g~I~iwd~~~~~~~~~~~---------------~h~~~I~~l~~sp~g~~l~sg~~-----dg----- 569 (670)
++.-.+ ..|+.++.. |+....+. ..+...-+++++|+|+.|+++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 788888876 66544431 12345789999999997766542 22
Q ss_pred ------eEEEEeCCC-CeeeEE----eeC-----CCcceEEEEEcCCCCEEEEEEC-----CCcEEEEeCCC
Q 005913 570 ------TIMMWDLAS-GRCVTP----LMG-----HTSCVWTLAYSCEGSLLASGSA-----DCTVKLWDVTT 620 (670)
Q Consensus 570 ------~I~iwDl~~-~~~~~~----~~~-----h~~~V~sl~~s~~g~~l~sgs~-----Dg~I~iwd~~~ 620 (670)
.|..||..+ +..... +.. ....|+.+.+-+++++|+.=-. ...++|+.+..
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 244455554 322222 222 3467888999999987765332 44566666553
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.92 E-value=26 Score=37.79 Aligned_cols=148 Identities=13% Similarity=0.099 Sum_probs=84.0
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce----
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---- 497 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---- 497 (670)
+....+..++++.+++.+..-..++-||--...-...-......+..+.|.+++..++++ .+|.+ +|..+.+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 345566777888877776543333334432111111222234568899999998877665 55554 444444432
Q ss_pred -eEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 498 -LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 498 -~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
...... ....+..+.|.+++..+++| ..|.+.... ..|+.-... ..-...++.+.|.++++.+++| .+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 222221 12358889998887766665 567666653 344432222 2224568899998876665555 57777
Q ss_pred EEE
Q 005913 572 MMW 574 (670)
Q Consensus 572 ~iw 574 (670)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 457
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.91 E-value=24 Score=39.21 Aligned_cols=149 Identities=16% Similarity=0.058 Sum_probs=78.8
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC---CeeEEEEcCCCCEEEEEEc-------------CCcEEEE
Q 005913 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW 532 (670)
Q Consensus 469 l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~---~v~~v~~~p~~~~l~tgs~-------------dg~I~iw 532 (670)
+...++|.+++..+ +.++.+|+. |+.+........ .-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678888776555 788888885 445544432221 1346677799999998872 1246667
Q ss_pred ECCCCcEEEEEec--CC-------------------------CCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 533 DVSSGECVRIFIG--HR-------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 533 d~~~~~~~~~~~~--h~-------------------------~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
| .+|+.+..+.. |- -.+.++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 78877765431 10 1378899988 566666666666899999888887776
Q ss_pred eeCCCcceE-----EEEE---------------c-CCCCEEEEEECCC---cEEEEeCCCC
Q 005913 585 LMGHTSCVW-----TLAY---------------S-CEGSLLASGSADC---TVKLWDVTTS 621 (670)
Q Consensus 585 ~~~h~~~V~-----sl~~---------------s-~~g~~l~sgs~Dg---~I~iwd~~~~ 621 (670)
+-.|.+.-. -+.+ . +-|++-+.--.+| .|.++|=...
T Consensus 309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TT
T ss_pred eCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCC
Confidence 655432110 0111 0 1245566666777 8888886543
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.82 E-value=27 Score=37.81 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=86.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC-----CCCEE
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-----LGDFI 436 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~L 436 (670)
+...+++|+..|.++||+-...... .........-..+|..+..-+ +...|
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~------------------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~L 91 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ------------------------PEDLLLETQLKDPILQVECGKFVSGSEDLQL 91 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC------------------------CccEEEEEecCCcEEEEEeccccCCCCcceE
Confidence 4578999999999999996431110 011122222345666665432 11233
Q ss_pred EEEeCCCeEEEEeCCCC--c-------eeEEeeCC--CccEeEEEEecC-----CCEEEEEECCCcEEEEECCCCceeEE
Q 005913 437 LSSSADTTIRLWSTKLN--A-------NLVCYKGH--NYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~--~-------~~~~~~~h--~~~V~~l~~sp~-----g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
|+ =.-..+.+|.+... . .+.....| ......+++-|- ..++++-+.||.+.+++-+...-.+.
T Consensus 92 aV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~ 170 (418)
T PF14727_consen 92 AV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF 170 (418)
T ss_pred EE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence 33 33455666665211 1 11222223 223444555442 35788889999999999877544444
Q ss_pred ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q 005913 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~ 534 (670)
+.+ .--...+.|.+....|++++++..+..|..
T Consensus 171 lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 171 LPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred cCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 443 344556788888899999999988888865
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.59 E-value=0.037 Score=58.56 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=98.5
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcEEEEEec
Q 005913 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIG 545 (670)
Q Consensus 467 ~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~ 545 (670)
-...|-|.+..++.++.+-.+..||-... ..... ...+....++|..++..++. +-..+.+.+||+.+......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 35678888888999999888888885432 22111 23345566788877765544 55678999999976543222222
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
....-.-+.|++-+..++.|...|.+.|+...+.+.+..+-.|...+++++|.+.+. .+.++.|
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 222222378999999999999999999999998887766656999999999999875 3444434
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.46 E-value=1.1 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCC
Q 005913 548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 548 ~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~ 579 (670)
+.|.++.|||.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888999999999853
No 461
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.41 E-value=25 Score=36.69 Aligned_cols=135 Identities=7% Similarity=0.080 Sum_probs=64.4
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCce---eEEecccCCCe--eEEEEcCCCCEEEEEEc-----CCcEEEEECCCCc
Q 005913 474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE 538 (670)
Q Consensus 474 ~g~~l~s~s~d-----g~v~lwd~~~~~~---~~~~~~~~~~v--~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~~~ 538 (670)
++..++.|+.+ ..+..+|+.+... ...+..-.... .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55667777754 3566677765442 11111111111 12222 25566666664 2368889988765
Q ss_pred EEEEEe-cCCCCeEEEEEcCCCCEEEEEECCC----eEEEEeCCCCee--eEEeeCCCcc-----eEEEEEcCCCCEEEE
Q 005913 539 CVRIFI-GHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRC--VTPLMGHTSC-----VWTLAYSCEGSLLAS 606 (670)
Q Consensus 539 ~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg----~I~iwDl~~~~~--~~~~~~h~~~-----V~sl~~s~~g~~l~s 606 (670)
-...-. .........+...++++.+.|+.++ .+.+||..+.+- +..+.....+ ..++. ..++.+++.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~ 229 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLCI 229 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEEE
Confidence 432211 1111122222334577777777654 356888876542 2221100011 11122 235678888
Q ss_pred EECC
Q 005913 607 GSAD 610 (670)
Q Consensus 607 gs~D 610 (670)
|+.+
T Consensus 230 GG~~ 233 (323)
T TIGR03548 230 GGFN 233 (323)
T ss_pred CCcC
Confidence 8876
No 462
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.00 E-value=22 Score=37.93 Aligned_cols=147 Identities=15% Similarity=0.058 Sum_probs=81.0
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeccc--CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEE
Q 005913 477 YFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSL 553 (670)
Q Consensus 477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l 553 (670)
.++++..+|.+.-.|.+++..+.....- ...+.+-.+..+|+ +++++.++.++.+|.++|+.+..+.... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3444467777777777777655433221 12222223333565 7888889999999999999998887665 111111
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---cceEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCccccc
Q 005913 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---~~V~sl~~s~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~ 626 (670)
..-.++ .+..++.+|.+...|..+|...-...... ..+.+-....++ .++.+.. ++.+.-.|...+.....
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 222233 34444478999999988888765543221 111111111233 3444444 55555566655554433
No 463
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.93 E-value=12 Score=40.68 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 590 ~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..|.++...+..+.|++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999998899999999999999999863
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=25 Score=35.64 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=114.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC--ccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
.+-+..+.++ +++...+..+.-++|.|+.+.........-+ +-..+ |.-.|++..++..|.-+.+.|+.+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 4556677777 5677777777789999998776544332211 22223 3345888888887777888898765422
Q ss_pred ---EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 499 ---RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 499 ---~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
.........-..++. .|++-..+..|+-+.+.|+.+......+. .....+.++..+++--+++..+ --+.+
T Consensus 162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence 233333333345554 57788888899999999998654332221 1223678888887755555443 34666
Q ss_pred EeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 574 WDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 574 wDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
-|....+....+- ....++.--.+.-.+++......+.-+-+-|+.+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 7766554333222 111221111233345666666666666677776544
No 465
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.44 E-value=2 Score=42.17 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=50.3
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
+..+++++++.+.+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567899999999999999999998765322 1 2446688888998888777665 57888888654
Q ss_pred C
Q 005913 579 G 579 (670)
Q Consensus 579 ~ 579 (670)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 466
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.18 E-value=26 Score=35.16 Aligned_cols=196 Identities=10% Similarity=0.081 Sum_probs=122.9
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI- 500 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~- 500 (670)
..-+.++-.|||..-.++...|.|--.|..+++....--+....-..|...|||..-++-+.. .|.-.|-++....+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345667888889888888888888888888887766555555566678888888766654443 455555544432221
Q ss_pred e--cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 501 M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 501 ~--~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
+ ..-........|.+.|+.-+++... .---.|.. ...+.+|... ...-+.|+..|+|..-++.-.+..|-..|..
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 1 1223457788999999999988632 11111111 1223333322 2345678899999988887778888888877
Q ss_pred CCeeeEE--eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 578 SGRCVTP--LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 578 ~~~~~~~--~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++..... -......-..+.-+|.|..-+|....+.+..+|-..
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7632211 112122334455577888888877777777777544
No 467
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=8.3 Score=41.12 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=78.9
Q ss_pred cCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee----EEeeCCCcceEEEEE
Q 005913 525 SDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAY 597 (670)
Q Consensus 525 ~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~----~~~~~h~~~V~sl~~ 597 (670)
..|.+.-|-+... -++..-....++|.++.||+|.+.||.--.+..|.+++....+.. .+.+..+..|....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 3444555554322 123333345679999999999999999999999999997433322 222333456889999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
+.+ .-+|..+..| +-+|-+.... ..++...++.-.|.-..|+++-.++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pek--------------rslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEK--------------RSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhh--------------hhhhhhhhcccCccEEEEccccceE
Confidence 865 5566665444 6677765532 2345556777788888888876543
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.84 E-value=36 Score=36.28 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=109.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEE----ecCCCE--EEEEEC-C---CcEEEEECCCC-ceeE
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF----NPQGHY--FASSSH-D---RTARIWSMDRI-QPLR 499 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~----sp~g~~--l~s~s~-d---g~v~lwd~~~~-~~~~ 499 (670)
|...+++....++-+.+||+. ++.+..+.. +.+..+.. .-.|.. |+.++. + .+|++|.++.. ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 345678888888999999998 555555542 22332222 113443 444442 2 46999987531 2333
Q ss_pred Eecc-------cCCCeeEEEE--cC-CCC-EEEEEEcCCcEEEEECC---CC----cEEEEEecCCCCeEEEEEcCCCCE
Q 005913 500 IMAG-------HLSDVDCVRW--HI-NCN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY 561 (670)
Q Consensus 500 ~~~~-------~~~~v~~v~~--~p-~~~-~l~tgs~dg~I~iwd~~---~~----~~~~~~~~h~~~I~~l~~sp~g~~ 561 (670)
.+.. ....+..+++ +| +|. +.++...+|.+..|-+. .+ +.+|.|.. .+.+-.|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3321 1234555655 33 344 66678889988888764 33 45788865 357888999998889
Q ss_pred EEEEECCCeEEEEeCCC-----CeeeEEeeC--CCcceEEEEEc--CCC-C-EEEEEECCCcEEEEeCCCC
Q 005913 562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYS--CEG-S-LLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 562 l~sg~~dg~I~iwDl~~-----~~~~~~~~~--h~~~V~sl~~s--~~g-~-~l~sgs~Dg~I~iwd~~~~ 621 (670)
|+.|-++--|+-|+... +..+....+ ....|-.|+.- .++ . +|+|.-.+++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 233333322 33567777763 333 2 4455556789999998764
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.77 E-value=36 Score=36.26 Aligned_cols=190 Identities=11% Similarity=-0.006 Sum_probs=100.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeeCCC--ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-CeeEE
Q 005913 435 FILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCV 511 (670)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~-~v~~v 511 (670)
.+..++.+|.|.-.|..++..+-....-. ..+.+-.+..+|+ ++.++.++.++.+|.++++.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 44445677777777777776543222211 1122222222565 78888889999999988988887775541 11111
Q ss_pred EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEeCCCCeeeEEee
Q 005913 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l~sg~~--dg~I~iwDl~~~~~~~~~~ 586 (670)
..-.+ ..+..++.++.+...|..+|........... .+..--.. ....++.+.. ++.+.-.|..+|...-...
T Consensus 149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 11122 2344444789999999888888766543221 11111111 2234444444 6677777887877665532
Q ss_pred CCC----cceEEEEEcC-----CCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 587 GHT----SCVWTLAYSC-----EGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 587 ~h~----~~V~sl~~s~-----~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.+. ..+....... .+.-++.++.+|.+...+..+++.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 111 1110000000 1112355556666666676666655444
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.65 E-value=2.8 Score=41.16 Aligned_cols=66 Identities=15% Similarity=0.333 Sum_probs=50.7
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCeeeEEe-------e-------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL-------M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~-------~-------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|.++.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999988765332 1 2446788999998888777665 57889998765
Q ss_pred C
Q 005913 621 S 621 (670)
Q Consensus 621 ~ 621 (670)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=5.4 Score=43.23 Aligned_cols=29 Identities=10% Similarity=-0.174 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~ 535 (670)
.|..+..++.|..++..+.+|.+.++=.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh
Confidence 36677788999999999999987776433
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.96 E-value=36 Score=35.69 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=88.0
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCc------EEEEECCC--C--cEEE-----EEecCCC--------CeEEEEEcCCCCE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKT------VRLWDVSS--G--ECVR-----IFIGHRS--------MILSLAMSPDGRY 561 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~------I~iwd~~~--~--~~~~-----~~~~h~~--------~I~~l~~sp~g~~ 561 (670)
.+.+..+.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456778888876666777777777 66655543 1 1111 1111111 2347888788888
Q ss_pred EEEEECC------CeEEEEeCCCCeeeEEee---------------CCCcceEEEEEcCCCCEEEEEECC-----C--c-
Q 005913 562 MASGDED------GTIMMWDLASGRCVTPLM---------------GHTSCVWTLAYSCEGSLLASGSAD-----C--T- 612 (670)
Q Consensus 562 l~sg~~d------g~I~iwDl~~~~~~~~~~---------------~h~~~V~sl~~s~~g~~l~sgs~D-----g--~- 612 (670)
+++.-.+ ..|+.+|.. |+.+..+. ..+...-+|+++|+|+.|+++... + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887667 789999976 66544431 123567889999999976665432 2 1
Q ss_pred ------EEEEeCCCCccccccccccCCcccccccccCC-----CCCCeEEEEEecCCcEEEE
Q 005913 613 ------VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-----KSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 613 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~V~~l~fs~~~~~La~ 663 (670)
++|+......... ......+.+.. ....|..+.+-+++.+|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~--------~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGE--------PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCc--------cceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5565554332100 00011222221 4567888899999887763
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=4.5 Score=48.55 Aligned_cols=137 Identities=15% Similarity=0.226 Sum_probs=87.6
Q ss_pred CCCcEEEEECCCCceeEEecccCCCeeEEEE--------cCCCCEEEEEEcCCcEEEEECC----CCcEE-----EEEec
Q 005913 483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--------HINCNYIATGSSDKTVRLWDVS----SGECV-----RIFIG 545 (670)
Q Consensus 483 ~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~l~tgs~dg~I~iwd~~----~~~~~-----~~~~~ 545 (670)
.|..+.+|+.+++.....+.+-...|..|.. -|.=+++++-+.--.|.++-+. ++..- ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5788999999987777777766666655543 2333455554445556665442 22111 11122
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC----CC---e-e----------------eEEee-CCCcceEEEEEcCC
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLA----SG---R-C----------------VTPLM-GHTSCVWTLAYSCE 600 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~----~~---~-~----------------~~~~~-~h~~~V~sl~~s~~ 600 (670)
....|.|+....+|+.+++|-+ | .+|.+. .| + + +-.+. .+..+|..++....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 3456889998888888777654 4 455431 11 1 1 11223 45679999999988
Q ss_pred CCEEEEEECCCcEEEEeCCCCc
Q 005913 601 GSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 601 g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
-+++.+-+..|+|.+|++....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeeeccCceEEEEEccCCC
Confidence 8899999999999999998743
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=9.1 Score=41.55 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.4
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWS 449 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd 449 (670)
.-.|+.+..++.|..++..+.+|.+..+=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 35688899999999999999999665543
No 475
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.63 E-value=1.6 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 005913 352 NGLNCASISQDG---SLVAGGFSDSSLKVWDMAK 382 (670)
Q Consensus 352 ~~V~~l~fs~d~---~~La~g~~dg~I~Iwdl~~ 382 (670)
+.|.|+.|||+. .+||..-.-|.|.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5999998899999999873
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=5.7 Score=47.75 Aligned_cols=136 Identities=17% Similarity=0.307 Sum_probs=88.9
Q ss_pred eCCCeEEEEeCCCCceeEEeeCCCccEeEEEE--------ecCCCEEEEEECCCcEEEEECCCCc---ee------EEec
Q 005913 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA 502 (670)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--------sp~g~~l~s~s~dg~v~lwd~~~~~---~~------~~~~ 502 (670)
+.|..+.+|+.+++.....+.+-...|..|.. -|.=+++++.+.--.|.++-+.-.. .. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999998888888877766766653 3333455555444556666432110 11 1222
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC----CCC---c-E----------------EEEEe-cCCCCeEEEEEcC
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV----SSG---E-C----------------VRIFI-GHRSMILSLAMSP 557 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~----~~~---~-~----------------~~~~~-~h~~~I~~l~~sp 557 (670)
.....|.|+....+|+.+++|- ||. +|.+ ..| + | +..+. .+..+|..++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3356789999888888777764 554 4433 111 1 1 11122 4567999999998
Q ss_pred CCCEEEEEECCCeEEEEeCCC
Q 005913 558 DGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 558 ~g~~l~sg~~dg~I~iwDl~~ 578 (670)
....+.+-+..|.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999976
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.22 E-value=51 Score=36.17 Aligned_cols=106 Identities=10% Similarity=0.160 Sum_probs=60.8
Q ss_pred CccEeEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEe----c-ccCCCeeEEEEcCCC------CEEEEEE-----
Q 005913 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LRIM----A-GHLSDVDCVRWHINC------NYIATGS----- 524 (670)
Q Consensus 463 ~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~--~~~~----~-~~~~~v~~v~~~p~~------~~l~tgs----- 524 (670)
-...|.++|.|+|..|++--..|.|++++..++.. +..+ . ........|++||+- .+|.+..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34578999999998776665469999998655432 1111 1 134668899999874 3444432
Q ss_pred -----cCCcEEEEECCCC-----cEEEEEecC----CCCeEEEEEcCCCCEEEEEECC
Q 005913 525 -----SDKTVRLWDVSSG-----ECVRIFIGH----RSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 525 -----~dg~I~iwd~~~~-----~~~~~~~~h----~~~I~~l~~sp~g~~l~sg~~d 568 (670)
....|.-|.+... .....+... ...-..|+|.|||.++++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 111222211 1123578899999877665544
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.07 E-value=64 Score=37.18 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=38.5
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
|-+.++.+.|.-++--++..-.|.+ ..+. ......-...|...+||.|.+.++....+++|.+++-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 5555666666555443443333332 1111 1112223456778899999988888888888888763
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=30 Score=33.37 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=96.7
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcEEEEEecCCCCe
Q 005913 474 QGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (670)
Q Consensus 474 ~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~h~~~I 550 (670)
+|+++.+.+. ...|++||+++++.+..-.-....+..=-...-+.++.. .-.+|.-..+|..+-+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 5667777664 347999999998877654422112211111112333332 3468888899999888877664 23333
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee----CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM----GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~----~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~ 625 (670)
..++ .|+.-|+.++....++.-|..+-..+.++. +.. ..+.-+.|- +|.+.|-.=.+..|...+..++....
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4444 345556666666677777765543332221 111 122233332 45444444444444444554444322
Q ss_pred ccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEee
Q 005913 626 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA 665 (670)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs 665 (670)
-.+...- +..+..-..+..-.+.+++.|++ +++++|-
T Consensus 211 widlS~L---~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGL---LKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCC---chhcCccccccccccceeecCcCCeEEEecC
Confidence 2211100 01122223345567889999986 7777764
No 480
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=30 Score=39.54 Aligned_cols=178 Identities=13% Similarity=0.040 Sum_probs=88.9
Q ss_pred CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE---EecccCCCeeEEEEcCCCC
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR---IMAGHLSDVDCVRWHINCN 518 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~---~~~~~~~~v~~v~~~p~~~ 518 (670)
--.|+|++.. |..+....-...++-.+.|+.+. -+++...+|++++|++-...... .+......|..+.+..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3458888876 44444333233367789999665 56777899999999985422211 0122233454444444664
Q ss_pred EEEEEEcCCcEEEEECCCCcEEEEEec-CCC--CeEEEEEcCCCC---EEEEEE-CCC-eEEEEeCCCCeeeEEeeCCCc
Q 005913 519 YIATGSSDKTVRLWDVSSGECVRIFIG-HRS--MILSLAMSPDGR---YMASGD-EDG-TIMMWDLASGRCVTPLMGHTS 590 (670)
Q Consensus 519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~--~I~~l~~sp~g~---~l~sg~-~dg-~I~iwDl~~~~~~~~~~~h~~ 590 (670)
.+++ .+|.+.+-.-......+.+.. ... +-.|-...++++ .++-.. ..| .+..-+....+. ..+....+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSWPNS 217 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCCCCc
Confidence 4444 455555443222212222221 111 112222222211 111111 000 011111111111 11222235
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+..++.||+.++|+-=..+|.|.+-+++..+..
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 6778999999999999999999998887765543
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.63 E-value=51 Score=34.67 Aligned_cols=53 Identities=9% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCceeEEeeCCCccEeEE-EE-ecCCCEEEEEECC
Q 005913 432 LGDFILSSSAD-----------TTIRLWSTKLNANLVCYKGHNYPVWDV-QF-NPQGHYFASSSHD 484 (670)
Q Consensus 432 ~~~~L~s~s~D-----------g~I~lwd~~~~~~~~~~~~h~~~V~~l-~~-sp~g~~l~s~s~d 484 (670)
++.+.+.|+.+ ..+..||..+..-...-.......... .. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 45666666542 247778877654332211111111111 11 2467778888754
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.38 E-value=66 Score=35.73 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=62.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc---EeEEEEecCCCEEEEEEC-------------CCcEEEE
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW 490 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~l~~sp~g~~l~s~s~-------------dg~v~lw 490 (670)
+...++|.+++..+ ..++.+|+. |+.+..+.-.... -.++..-|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888776555 678888886 5555555433221 356778899999888771 1234445
Q ss_pred ECCCCceeEEec--ccC-------------------------CCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEE
Q 005913 491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRI 542 (670)
Q Consensus 491 d~~~~~~~~~~~--~~~-------------------------~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~ 542 (670)
| .+++.+..+. .|. -.++++.+.+....|++.++. ..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 5 5555444321 111 237889999855555555554 4899999889988887
Q ss_pred EecCC
Q 005913 543 FIGHR 547 (670)
Q Consensus 543 ~~~h~ 547 (670)
+-.+.
T Consensus 309 lg~~~ 313 (477)
T PF05935_consen 309 LGPPG 313 (477)
T ss_dssp ES-ST
T ss_pred eCCCC
Confidence 76553
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.57 E-value=49 Score=34.47 Aligned_cols=106 Identities=5% Similarity=0.116 Sum_probs=51.4
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCcee---EEeeCCCccE--eEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 005913 432 LGDFILSSSAD-----TTIRLWSTKLNANL---VCYKGHNYPV--WDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ 496 (670)
Q Consensus 432 ~~~~L~s~s~D-----g~I~lwd~~~~~~~---~~~~~h~~~V--~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~ 496 (670)
++.+++.|+.+ ..+..+|+.+.... .....-..+. .+++. -++..++.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 35555666653 35666777655431 1111111111 11222 256667777642 357778877654
Q ss_pred eeEE--ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcE
Q 005913 497 PLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC 539 (670)
Q Consensus 497 ~~~~--~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~ 539 (670)
-... +... ......+...+++..+.|+.++ .+.+||..+.+-
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221 1111 1112222234567777777654 356888887654
No 484
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.06 E-value=99 Score=36.68 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCccEeEEEEe---c----CCCEEEEEECCCcEEEEECC------C---------CceeEEec---ccCCCeeEEEEcC
Q 005913 461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI 515 (670)
Q Consensus 461 ~h~~~V~~l~~s---p----~g~~l~s~s~dg~v~lwd~~------~---------~~~~~~~~---~~~~~v~~v~~~p 515 (670)
....||..|+|. . ...+|++- ....+.|+... . ..++..+. ....+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 22355544 34556666611 1 12333333 1234677899998
Q ss_pred C-CCEEEEEEcCCcEEEEECCCC-----cEEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 516 N-CNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 516 ~-~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~----------I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
. ...||+....|...|||+..+ ...+....+.+. -..|.|.++...|+.++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 4 468999999999999999211 111111122222 337888888777777754 56899999877
Q ss_pred eeeEEe--eCCCcceEEEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 005913 580 RCVTPL--MGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 580 ~~~~~~--~~h~~~V~sl~~s~~--g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.....+ ......|..+.-++. +..++.. ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 653312 223467888887776 3333332 246777777763
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.71 E-value=66 Score=34.39 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=19.0
Q ss_pred eEEEEeCCCCceeEEeeCCCccEe-EEEEe-cCCCEEEEEECC
Q 005913 444 TIRLWSTKLNANLVCYKGHNYPVW-DVQFN-PQGHYFASSSHD 484 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~-~l~~s-p~g~~l~s~s~d 484 (670)
.+..||..+.+-...-.....+.. ..+.. -++..++.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 477788776543322111111111 11122 467777777754
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.57 E-value=3.9 Score=43.45 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=101.1
Q ss_pred eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe-cccCC----Cee-EEEEcCCCCEEEEEEcCCcEEE
Q 005913 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM-AGHLS----DVD-CVRWHINCNYIATGSSDKTVRL 531 (670)
Q Consensus 459 ~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~-~~~-~~~~~----~v~-~v~~~p~~~~l~tgs~dg~I~i 531 (670)
+.....+|..+-..|+|+.+..-+. .++.++++.+.... +.+ ....+ .|+ .+..-..|..+++++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445567888889999998877665 68888888654321 111 11111 122 1122235667888999999988
Q ss_pred E-ECCCCc-----EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913 532 W-DVSSGE-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 532 w-d~~~~~-----~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~ 605 (670)
| |++.+. .++.+.-...++..+.-..+.+-+++-+..|++.++.-...+.+-.-. --..+.-+++||.+.+|+
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence 7 665432 233333333445444444455677888888999888765544432211 223556789999999888
Q ss_pred EEECCCcEEEEeCCCCccc
Q 005913 606 SGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~~~~~ 624 (670)
+-. .|.++++.+++..+.
T Consensus 374 ~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 374 SED-QGKIRLAQLENRNPE 391 (733)
T ss_pred eec-CCceEEEEecCCCCC
Confidence 653 578999999887653
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.12 E-value=27 Score=33.88 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=61.9
Q ss_pred CEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C---eEEEE---eCC--CCeeeE-
Q 005913 518 NYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDED---G---TIMMW---DLA--SGRCVT- 583 (670)
Q Consensus 518 ~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g---~I~iw---Dl~--~~~~~~- 583 (670)
..|+.+.....|.+|++.+. +....|. .-+.|..+.++..|.||+|--.+ . .+|+| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555567788999999833 3445554 34889999999999999995322 2 55664 221 112221
Q ss_pred EeeCC---------------------CcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913 584 PLMGH---------------------TSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 584 ~~~~h---------------------~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
++-|| ..++.+++..| .|+++ .|+ ++++.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence 22222 23456667666 45544 444 5589999886643
No 488
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.87 E-value=48 Score=37.84 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=86.5
Q ss_pred CeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcE----E-EEEecCCCCeEEEEEcCCCCEEEEEEC--CC--eEEEEeC
Q 005913 507 DVDCVRWHINCNYIATGSSDK-TVRLWDVSSGEC----V-RIFIGHRSMILSLAMSPDGRYMASGDE--DG--TIMMWDL 576 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~----~-~~~~~h~~~I~~l~~sp~g~~l~sg~~--dg--~I~iwDl 576 (670)
.+.+++.++++..++..+.++ .+++..+..+.. . ..+. ...++.-.|.++| .+.+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence 678899999999988877665 566655433332 1 1222 2346777888887 5555522 22 2666653
Q ss_pred CCCeeeEEee--CCCc-ceEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 577 ASGRCVTPLM--GHTS-CVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 577 ~~~~~~~~~~--~h~~-~V~sl~~s~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
+|.... +. ...+ .|..+..|+||-.++.-.. .+.|.|=-+.....- ...+.....+...-..+.
T Consensus 441 -~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G--------~~~l~~~~~l~~~l~~v~ 510 (599)
T PRK13613 441 -DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKA--------VVSVEEFRSLAPELEDVT 510 (599)
T ss_pred -CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCC--------cEEeeccEEeccCCCccc
Confidence 454431 22 2333 7999999999987766543 356666555432211 111112223333344599
Q ss_pred EEEEecCCcEEEEee
Q 005913 651 SLQFSRRNLLFAAGA 665 (670)
Q Consensus 651 ~l~fs~~~~~La~gs 665 (670)
+++|..+..+++.|.
T Consensus 511 ~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 511 DMSWAGDSQLVVLGR 525 (599)
T ss_pred eeEEcCCCEEEEEec
Confidence 999999999888664
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.86 E-value=18 Score=36.93 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=69.5
Q ss_pred CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE------cCCcEEEEECCCCcEEEEEec----CCCCeEEEE
Q 005913 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVRIFIG----HRSMILSLA 554 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs------~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~ 554 (670)
..|++||..+.+-...-.+-.+.|..+.|..+.+.++.|. ....+..||..+..-...-.+ -.++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999988766655555667899999986666666654 355788899876654322221 236788887
Q ss_pred EcC-CCC-EEEEEE---CCCeEEEEeCCCCeeeEE-eeCCCcceEEEEE
Q 005913 555 MSP-DGR-YMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAY 597 (670)
Q Consensus 555 ~sp-~g~-~l~sg~---~dg~I~iwDl~~~~~~~~-~~~h~~~V~sl~~ 597 (670)
+.. |+. +.++|. .+..|..||=.++..+.. .......|..+.+
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 743 333 443433 344688888766665544 2233344555543
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.53 E-value=48 Score=36.39 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=65.1
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--E----EEe-cCCCCeEEEEEcCCC------CEEEEEE
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--R----IFI-GHRSMILSLAMSPDG------RYMASGD 566 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~----~~~-~h~~~I~~l~~sp~g------~~l~sg~ 566 (670)
.+.........|+|.|+++.|++--..|.|++++..++... . ... ...+....|+++|+- ++|+...
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 34445677889999999987777655699999986654321 1 111 124568899999874 3444432
Q ss_pred ----------CCCeEEEEeCCCC-------eee-EEee---CCCcceEEEEEcCCCCEEEEEECC
Q 005913 567 ----------EDGTIMMWDLASG-------RCV-TPLM---GHTSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 567 ----------~dg~I~iwDl~~~-------~~~-~~~~---~h~~~V~sl~~s~~g~~l~sgs~D 610 (670)
....|.-|.+... +.+ ..+. .|. -..|.|.|||.++++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1234555554321 111 1111 233 3468899999877766654
No 491
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=82.47 E-value=1.3e+02 Score=36.88 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=19.7
Q ss_pred cccCCCCCCeEEEEEecCCcEEEEee
Q 005913 640 KTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 640 ~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
..-..+-..+++++.+|+|.+.++-.
T Consensus 655 ~At~A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 655 AATQAKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred hhhccccCCcceEEECCCCcEEEecC
Confidence 34455677899999999999877543
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.41 E-value=70 Score=34.82 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999999999999999974
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.35 E-value=41 Score=38.64 Aligned_cols=227 Identities=14% Similarity=0.118 Sum_probs=105.2
Q ss_pred cceecCCCCCCceeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ccccc-cCC-C----CCCCCCC
Q 005913 330 NRVHLSSAALPSVSFYTF-INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVS-SGL-Q----GENDTTP 400 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~-~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~-~~~-~----~~~~~~~ 400 (670)
+.+.+-..+.|.-..+.. .+-.++|.+.+||-|.+.++.-..+..|.+++..-.. ..... ... . -...+..
T Consensus 90 Dii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgk 169 (1243)
T COG5290 90 DIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGK 169 (1243)
T ss_pred cEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecc
Confidence 444444444453333333 3457889999999999988888888888888743210 00000 000 0 0000000
Q ss_pred CccccCCCCCccc-------eee----eecCccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCcc
Q 005913 401 REDIIGPNGRKRS-------YTL----YQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYP 465 (670)
Q Consensus 401 ~~~~~~~~~~~~~-------~~~----~~~h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~ 465 (670)
.+..+...+.... ... +..-...=.-++|--|..+.+.+... ..+++|.-. |..-......++.
T Consensus 170 ketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~ 248 (1243)
T COG5290 170 KETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGM 248 (1243)
T ss_pred cchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccc
Confidence 0000000000000 000 00001111235565555665555432 234555422 1111111111222
Q ss_pred EeEEEEecCCCEEEEEECCC-----cEEEEECC---CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913 466 VWDVQFNPQGHYFASSSHDR-----TARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537 (670)
Q Consensus 466 V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~ 537 (670)
-..+.|-|.|..+++-+.|| .|.++.-+ .|..-. -.+....+..++|+-....++.+ ....|.+|-..+-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-r~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-RVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-cCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 23488999999999987665 34444422 222211 11233445667777666555554 4567999976554
Q ss_pred cEEEEEecCCCCeEEEEEcCCC
Q 005913 538 ECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 538 ~~~~~~~~h~~~I~~l~~sp~g 559 (670)
..--...-.-..+.-+.|+|..
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEEeecCCCcceeeecccc
Confidence 3322222233446677888843
No 494
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.11 E-value=9.3 Score=43.28 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred cCCCEEEEEECCCcEEEEECCC----CceeEE-----------ec-----------ccCCCeeEEEEcC----CCCEEEE
Q 005913 473 PQGHYFASSSHDRTARIWSMDR----IQPLRI-----------MA-----------GHLSDVDCVRWHI----NCNYIAT 522 (670)
Q Consensus 473 p~g~~l~s~s~dg~v~lwd~~~----~~~~~~-----------~~-----------~~~~~v~~v~~~p----~~~~l~t 522 (670)
++...++.+..||.+....... +..... +. ...+.+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777777888777776543 111110 00 0123455566666 7789999
Q ss_pred EEcCCcEEEEECCCCcEEEEEe
Q 005913 523 GSSDKTVRLWDVSSGECVRIFI 544 (670)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~ 544 (670)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.08 E-value=1.3e+02 Score=36.03 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=96.6
Q ss_pred eEEEEeCCCCceeEEeeCC----CccEeEEEEecCCC--EEEEEE-----------CCCcEEEEEC-CCCceeEEecccC
Q 005913 444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGH--YFASSS-----------HDRTARIWSM-DRIQPLRIMAGHL 505 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~--~l~s~s-----------~dg~v~lwd~-~~~~~~~~~~~~~ 505 (670)
.|++.|..++..+..+.-. ...+..+.|+.... ++++|+ .+|.++.|++ +.++.+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3677777766655444321 23456666766333 333332 2345666664 3344333332211
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-Ceee
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCV 582 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~ 582 (670)
-+-.-.+.+|...++++| ....+++||+...+.++.... -...|+.+++. +..++.|...-.+.++-.+. ++.+
T Consensus 934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 122234566877777766 567899999988877665432 23457777765 66788887666666554432 3334
Q ss_pred EEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 583 TPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 583 ~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
..+-... ..|+.+.+- |...++.+..=|.+.+-.+..
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 4443222 345555543 445677776667777766644
No 496
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.03 E-value=10 Score=35.69 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=26.8
Q ss_pred cceEEEEEcCCC------CEEEEEECCCcEEEEeCCCC
Q 005913 590 SCVWTLAYSCEG------SLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 590 ~~V~sl~~s~~g------~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..|.+++|||-| -+|++.+.+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 478999999954 48999999999999997653
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.52 E-value=8.2 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCC------CEEEEEECCCeEEEEeCCC
Q 005913 548 SMILSLAMSPDG------RYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 548 ~~I~~l~~sp~g------~~l~sg~~dg~I~iwDl~~ 578 (670)
..+.+++|||.| -+|++.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 3788889999999998653
No 498
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=13 Score=39.04 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 005913 3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS 81 (670)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 81 (670)
.+.+|.|+..++-+.|-.+.-..|.+|+..... ..... .+- .+...+.+..+.+. .-.-+|+.+.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~--~~~~~---~~F~el~~Iv~~lke~Dl---------~~aLeWa~~~ 181 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED--ESKSR---TEFVELNQIVEALKERDL---------EPALEWAESN 181 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc--chhhh---hhHHHHHHHHHHHHhccc---------hhHHHHHHHh
Confidence 455799999999999999999999999987542 00000 000 00011111111111 2235788887
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhHHhhhHHHHHHHhc
Q 005913 82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEG 137 (670)
Q Consensus 82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~ 137 (670)
-+..+.+=+.|=|=++-+-|++++..|..+ +|-.+-.++-.-|...|..||+.+..
T Consensus 182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 777777667788888999999999999988 88888887777777778888888654
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=79.30 E-value=1.4e+02 Score=35.29 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=51.5
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc----ccccCCccccc-ccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT----EEKSGTNRLRS-LKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 590 ~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
+.|.+++...-+.+++..-.||+|.++|-.+-+..... ........... =..++.-. ++..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~-~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQ-PPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCC-CCceEEECcccceEEEE
Confidence 45777777777889999999999999998876554433 11110111111 11232222 67789999999988887
Q ss_pred eCCCC
Q 005913 665 ALSKT 669 (670)
Q Consensus 665 s~dgs 669 (670)
..+|.
T Consensus 339 ~~~~~ 343 (753)
T PF11635_consen 339 DEDGK 343 (753)
T ss_pred ecCCC
Confidence 77764
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.84 E-value=7.6 Score=44.01 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=43.4
Q ss_pred CCCCEEEEEEcCCcEEEEECCC----CcEEEE--Ee--------------------cCCCCeEEEEEcC----CCCEEEE
Q 005913 515 INCNYIATGSSDKTVRLWDVSS----GECVRI--FI--------------------GHRSMILSLAMSP----DGRYMAS 564 (670)
Q Consensus 515 p~~~~l~tgs~dg~I~iwd~~~----~~~~~~--~~--------------------~h~~~I~~l~~sp----~g~~l~s 564 (670)
++...++++..||.+....... +..... +. ...+...++++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666777777787777766553 211111 10 0123455666666 6789999
Q ss_pred EECCCeEEEEeCCCCeeeEEe
Q 005913 565 GDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~ 585 (670)
.+.|+.+++||+.++.++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
Done!