Query 005913
Match_columns 670
No_of_seqs 844 out of 3838
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.5E-44 5.1E-49 391.9 40.7 282 345-669 102-403 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.5E-43 5E-48 371.3 41.1 285 344-669 25-313 (321)
3 2ynn_A Coatomer subunit beta'; 100.0 4.5E-43 1.6E-47 364.3 42.2 283 344-669 6-295 (304)
4 1got_B GT-beta; complex (GTP-b 100.0 1.7E-42 5.9E-47 365.8 45.2 284 342-669 46-335 (340)
5 2pbi_B Guanine nucleotide-bind 100.0 1.3E-41 4.6E-46 361.3 43.9 285 342-669 55-349 (354)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-41 1.5E-45 355.8 39.8 296 343-669 7-327 (345)
7 2j49_A Transcription initiatio 100.0 5.5E-44 1.9E-48 321.8 14.3 139 61-200 4-145 (148)
8 4gqb_B Methylosome protein 50; 100.0 2.3E-41 7.7E-46 358.1 36.5 285 350-669 29-323 (344)
9 3frx_A Guanine nucleotide-bind 100.0 1.8E-40 6.3E-45 347.2 42.7 293 344-669 10-309 (319)
10 2nxp_A Transcription initiatio 100.0 1.1E-43 3.8E-48 325.4 14.0 150 45-195 6-155 (156)
11 3iz6_a 40S ribosomal protein R 100.0 1.6E-41 5.4E-46 364.3 33.0 290 341-669 56-367 (380)
12 4ery_A WD repeat-containing pr 100.0 1.3E-39 4.3E-44 338.8 45.6 284 343-669 15-304 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 2.2E-39 7.4E-44 342.4 44.1 300 343-669 13-332 (343)
14 4g56_B MGC81050 protein; prote 100.0 1.2E-40 4E-45 354.5 34.1 281 348-669 39-335 (357)
15 2hes_X YDR267CP; beta-propelle 100.0 8.1E-40 2.8E-44 344.0 39.3 286 343-669 6-320 (330)
16 3ow8_A WD repeat-containing pr 100.0 8.1E-40 2.8E-44 342.8 38.7 263 329-619 57-320 (321)
17 1erj_A Transcriptional repress 100.0 1.6E-39 5.4E-44 350.3 41.8 298 345-669 58-381 (393)
18 1vyh_C Platelet-activating fac 100.0 8.8E-40 3E-44 354.4 38.1 262 329-619 129-410 (410)
19 2j4b_A TAF5, transcription ini 100.0 2.5E-42 8.4E-47 308.5 14.1 134 63-197 4-137 (138)
20 1nr0_A Actin interacting prote 100.0 5.7E-39 1.9E-43 366.2 42.7 304 329-669 169-603 (611)
21 2ymu_A WD-40 repeat protein; u 100.0 1.3E-38 4.5E-43 359.4 43.1 289 330-669 284-572 (577)
22 4gqb_B Methylosome protein 50; 100.0 1.1E-38 3.8E-43 337.4 37.9 250 347-622 78-333 (344)
23 1nr0_A Actin interacting prote 100.0 1.5E-38 5.1E-43 362.8 41.3 295 329-668 38-388 (611)
24 1got_B GT-beta; complex (GTP-b 100.0 3E-38 1E-42 333.3 40.2 263 329-617 76-340 (340)
25 3zwl_B Eukaryotic translation 100.0 1.8E-37 6.2E-42 327.8 43.2 285 340-669 21-338 (369)
26 4aow_A Guanine nucleotide-bind 100.0 5.5E-37 1.9E-41 321.2 43.9 294 345-669 32-329 (340)
27 1gxr_A ESG1, transducin-like e 100.0 6.6E-37 2.3E-41 319.6 43.7 283 343-669 43-329 (337)
28 2pbi_B Guanine nucleotide-bind 100.0 4.8E-37 1.6E-41 326.2 40.3 266 329-617 85-354 (354)
29 1sq9_A Antiviral protein SKI8; 100.0 1.3E-37 4.6E-42 333.8 35.7 301 344-669 9-387 (397)
30 2ymu_A WD-40 repeat protein; u 100.0 8.5E-37 2.9E-41 344.6 43.5 289 330-669 243-531 (577)
31 2pm7_B Protein transport prote 100.0 3.2E-37 1.1E-41 319.1 36.6 249 346-620 4-285 (297)
32 2pm9_A Protein WEB1, protein t 100.0 2.1E-38 7.3E-43 341.9 28.7 315 330-669 45-406 (416)
33 3dm0_A Maltose-binding peripla 100.0 6.7E-37 2.3E-41 354.4 42.6 300 345-669 376-685 (694)
34 1r5m_A SIR4-interacting protei 100.0 3.6E-37 1.2E-41 332.1 37.2 289 350-669 107-417 (425)
35 2ynn_A Coatomer subunit beta'; 100.0 4.8E-37 1.6E-41 318.8 36.5 242 413-669 5-251 (304)
36 1k8k_C P40, ARP2/3 complex 41 100.0 6.2E-37 2.1E-41 325.0 37.1 294 349-669 6-353 (372)
37 3i2n_A WD repeat-containing pr 100.0 2.9E-37 1E-41 325.3 34.1 303 339-669 6-345 (357)
38 4g56_B MGC81050 protein; prote 100.0 3.5E-37 1.2E-41 327.7 33.3 251 346-622 89-345 (357)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-36 4E-41 321.9 35.5 269 329-623 37-338 (345)
40 3ei3_B DNA damage-binding prot 100.0 1.4E-36 4.7E-41 325.1 36.1 279 344-669 66-374 (383)
41 3k26_A Polycomb protein EED; W 100.0 4.4E-37 1.5E-41 324.8 31.4 285 347-669 14-358 (366)
42 3iz6_a 40S ribosomal protein R 100.0 4.5E-37 1.5E-41 329.5 31.8 272 329-622 87-377 (380)
43 4gga_A P55CDC, cell division c 100.0 9.8E-37 3.4E-41 331.3 34.8 299 294-623 89-398 (420)
44 3odt_A Protein DOA1; ubiquitin 100.0 8.5E-36 2.9E-40 308.1 40.1 275 342-669 9-288 (313)
45 3dwl_C Actin-related protein 2 100.0 4.8E-38 1.6E-42 335.3 23.9 244 348-619 8-280 (377)
46 3frx_A Guanine nucleotide-bind 100.0 5.4E-36 1.8E-40 313.2 39.0 260 330-620 40-317 (319)
47 3dw8_B Serine/threonine-protei 100.0 6.8E-37 2.3E-41 333.6 33.0 300 350-668 27-438 (447)
48 2hes_X YDR267CP; beta-propelle 100.0 2.4E-36 8.2E-41 317.5 35.6 270 329-620 33-328 (330)
49 1r5m_A SIR4-interacting protei 100.0 2.6E-36 9E-41 325.3 36.4 289 345-669 39-353 (425)
50 1erj_A Transcriptional repress 100.0 4.8E-36 1.6E-40 323.1 38.1 239 353-620 125-389 (393)
51 3mkq_A Coatomer beta'-subunit; 100.0 6.9E-36 2.4E-40 351.2 40.3 281 345-668 7-294 (814)
52 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-37 1.2E-41 343.3 26.7 295 350-669 132-509 (524)
53 2xzm_R RACK1; ribosome, transl 100.0 1E-35 3.5E-40 314.2 35.7 260 330-621 49-341 (343)
54 4ery_A WD repeat-containing pr 100.0 3.3E-35 1.1E-39 305.4 38.3 262 329-619 44-311 (312)
55 3bg1_A Protein SEC13 homolog; 100.0 1.1E-36 3.6E-41 318.2 26.9 249 346-620 8-293 (316)
56 3vl1_A 26S proteasome regulato 100.0 1.1E-35 3.7E-40 321.6 35.8 280 352-666 98-409 (420)
57 1yfq_A Cell cycle arrest prote 100.0 5E-36 1.7E-40 314.4 31.9 275 348-669 8-315 (342)
58 3gre_A Serine/threonine-protei 100.0 5E-36 1.7E-40 326.6 33.0 304 342-669 53-432 (437)
59 3vl1_A 26S proteasome regulato 100.0 1.5E-36 5.2E-41 328.3 28.3 272 354-669 59-357 (420)
60 3jrp_A Fusion protein of prote 100.0 1.1E-35 3.7E-40 315.7 34.0 250 346-621 6-288 (379)
61 2pm9_A Protein WEB1, protein t 100.0 1.3E-36 4.5E-41 327.9 26.5 277 352-669 13-329 (416)
62 2pm7_B Protein transport prote 100.0 2.2E-35 7.4E-40 305.3 34.5 245 415-669 3-277 (297)
63 4e54_B DNA damage-binding prot 100.0 3.1E-36 1.1E-40 329.0 29.2 280 346-666 114-420 (435)
64 1gxr_A ESG1, transducin-like e 100.0 1.9E-35 6.4E-40 308.5 33.6 274 350-669 8-288 (337)
65 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-35 1E-39 307.2 34.1 253 347-623 7-340 (351)
66 3v7d_B Cell division control p 100.0 1.7E-34 5.8E-39 317.0 40.4 283 334-668 104-412 (464)
67 4aez_A CDC20, WD repeat-contai 100.0 3.5E-35 1.2E-39 316.9 34.0 296 298-624 81-384 (401)
68 4aez_A CDC20, WD repeat-contai 100.0 9E-35 3.1E-39 313.7 36.4 278 346-669 86-372 (401)
69 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-35 1.7E-39 360.2 38.8 253 340-620 604-913 (1249)
70 1sq9_A Antiviral protein SKI8; 100.0 8.9E-35 3.1E-39 311.7 32.2 269 329-621 35-396 (397)
71 3mmy_A MRNA export factor; mRN 100.0 4.3E-34 1.5E-38 301.8 36.8 285 340-669 28-338 (368)
72 4ggc_A P55CDC, cell division c 100.0 3.1E-34 1E-38 297.3 34.6 297 294-621 9-316 (318)
73 3v7d_B Cell division control p 100.0 1.9E-33 6.4E-38 308.7 42.7 289 329-668 141-454 (464)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-33 5.9E-38 307.7 41.2 290 329-669 138-430 (445)
75 3k26_A Polycomb protein EED; W 100.0 5.8E-35 2E-39 308.5 27.7 260 330-619 44-365 (366)
76 3dm0_A Maltose-binding peripla 100.0 9.6E-34 3.3E-38 327.9 38.7 262 329-620 404-693 (694)
77 4a11_B DNA excision repair pro 100.0 2.3E-33 8E-38 300.8 38.5 293 346-669 38-357 (408)
78 3i2n_A WD repeat-containing pr 100.0 2.2E-34 7.6E-39 303.2 29.7 266 329-622 43-355 (357)
79 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-33 3.6E-38 308.7 35.5 275 347-669 129-406 (435)
80 3bg1_A Protein SEC13 homolog; 100.0 4.5E-35 1.5E-39 305.8 23.6 244 415-669 7-285 (316)
81 4h5i_A Guanine nucleotide-exch 100.0 1.1E-33 3.8E-38 301.6 34.7 284 349-669 12-335 (365)
82 4gga_A P55CDC, cell division c 100.0 2.1E-33 7.3E-38 305.0 37.4 270 354-669 108-387 (420)
83 1pgu_A Actin interacting prote 100.0 5.3E-33 1.8E-37 315.2 41.1 293 330-669 183-606 (615)
84 3jro_A Fusion protein of prote 100.0 1.6E-34 5.4E-39 337.3 27.9 251 346-622 4-287 (753)
85 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-33 8.2E-38 345.2 39.6 312 329-669 636-1108(1249)
86 2j04_B YDR362CP, TAU91; beta p 100.0 3E-34 1E-38 319.5 28.4 276 327-620 180-517 (524)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-34 1.7E-38 307.7 29.1 276 353-664 36-331 (402)
88 3mkq_A Coatomer beta'-subunit; 100.0 4E-33 1.4E-37 327.7 39.2 307 330-665 35-375 (814)
89 3zwl_B Eukaryotic translation 100.0 1.6E-32 5.4E-37 289.8 39.7 264 329-623 53-349 (369)
90 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-33 7.1E-38 297.8 32.9 267 329-622 29-363 (372)
91 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-33 1.7E-37 330.0 39.2 234 344-609 10-296 (902)
92 1pgu_A Actin interacting prote 100.0 4.1E-33 1.4E-37 316.1 36.5 281 349-669 16-320 (615)
93 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-32 7.9E-37 282.2 38.6 259 330-623 39-299 (313)
94 3jrp_A Fusion protein of prote 100.0 3.1E-33 1.1E-37 296.7 32.5 247 413-669 3-279 (379)
95 4aow_A Guanine nucleotide-bind 100.0 4E-32 1.4E-36 284.2 39.8 263 330-622 61-339 (340)
96 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-33 1.6E-37 330.1 36.1 309 329-669 78-653 (902)
97 3ei3_B DNA damage-binding prot 100.0 3E-33 1E-37 299.2 31.1 261 329-620 95-382 (383)
98 4ggc_A P55CDC, cell division c 100.0 3.5E-32 1.2E-36 281.8 37.9 270 354-669 28-307 (318)
99 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-32 1.3E-36 297.1 40.0 270 346-669 113-383 (445)
100 3dwl_C Actin-related protein 2 100.0 1.7E-34 5.7E-39 307.8 20.7 241 416-668 6-273 (377)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.4E-33 2.2E-37 304.0 33.8 301 352-667 5-375 (450)
102 2xyi_A Probable histone-bindin 100.0 7.3E-33 2.5E-37 301.8 34.0 264 340-621 117-411 (430)
103 3f3f_A Nucleoporin SEH1; struc 100.0 9.9E-33 3.4E-37 288.0 31.0 255 415-669 5-329 (351)
104 4h5i_A Guanine nucleotide-exch 100.0 6.1E-33 2.1E-37 295.9 27.9 254 345-621 67-344 (365)
105 3vu4_A KMHSV2; beta-propeller 100.0 5.4E-32 1.8E-36 287.4 33.2 284 346-669 14-328 (355)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-32 4.1E-37 300.7 28.5 301 350-666 14-350 (588)
107 2xyi_A Probable histone-bindin 100.0 4.1E-32 1.4E-36 295.9 32.9 255 414-669 121-402 (430)
108 4e54_B DNA damage-binding prot 100.0 1E-32 3.5E-37 301.1 24.7 266 329-622 141-432 (435)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-32 1.3E-36 293.0 26.7 270 330-622 57-344 (402)
110 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-31 6.2E-36 291.0 31.8 254 329-623 152-417 (435)
111 3gre_A Serine/threonine-protei 100.0 2.6E-32 9E-37 297.2 24.6 255 413-669 54-351 (437)
112 3lrv_A PRE-mRNA-splicing facto 100.0 4E-32 1.4E-36 286.5 24.6 230 359-622 44-294 (343)
113 1yfq_A Cell cycle arrest prote 100.0 7.2E-31 2.5E-35 275.1 30.6 255 329-618 32-322 (342)
114 3jro_A Fusion protein of prote 100.0 2.8E-31 9.7E-36 309.9 28.9 245 415-669 3-277 (753)
115 4gq1_A NUP37; propeller, trans 100.0 6.3E-31 2.2E-35 283.1 27.7 236 419-669 87-382 (393)
116 3dw8_B Serine/threonine-protei 100.0 8.5E-31 2.9E-35 285.3 27.2 247 419-669 26-365 (447)
117 4a11_B DNA excision repair pro 100.0 1.6E-29 5.5E-34 270.9 33.3 247 349-624 97-369 (408)
118 3bws_A Protein LP49; two-domai 100.0 3.9E-29 1.3E-33 271.4 36.1 284 344-669 115-424 (433)
119 4gq1_A NUP37; propeller, trans 100.0 8.5E-31 2.9E-35 282.1 22.0 246 350-619 88-388 (393)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-29 1.1E-33 274.4 34.6 246 348-621 99-392 (450)
121 3mmy_A MRNA export factor; mRN 100.0 3.1E-29 1.1E-33 264.4 31.1 260 329-620 63-346 (368)
122 1l0q_A Surface layer protein; 100.0 9.5E-27 3.2E-31 249.0 40.4 261 330-625 12-280 (391)
123 3lrv_A PRE-mRNA-splicing facto 100.0 8.6E-29 2.9E-33 261.0 23.4 223 428-668 43-283 (343)
124 2w18_A PALB2, fancn, partner a 100.0 3.1E-28 1.1E-32 250.6 24.9 263 328-618 61-355 (356)
125 1l0q_A Surface layer protein; 100.0 8E-27 2.7E-31 249.6 36.9 256 364-668 3-266 (391)
126 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-28 2.8E-32 262.6 27.8 223 349-609 83-350 (588)
127 3bws_A Protein LP49; two-domai 100.0 2.7E-26 9.1E-31 249.0 35.2 259 330-620 144-432 (433)
128 3vu4_A KMHSV2; beta-propeller 100.0 3.6E-26 1.2E-30 242.4 30.1 234 352-622 59-338 (355)
129 2w18_A PALB2, fancn, partner a 99.9 1.6E-25 5.5E-30 230.4 32.0 270 354-669 42-349 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.4E-26 2.2E-30 245.9 29.9 278 331-658 94-409 (415)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-25 6.4E-30 242.2 25.3 270 352-668 63-375 (415)
132 2ojh_A Uncharacterized protein 99.9 8.1E-25 2.8E-29 222.8 24.8 256 368-668 17-293 (297)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2E-24 6.8E-29 251.3 29.0 293 351-666 36-399 (741)
134 3vgz_A Uncharacterized protein 99.9 7.1E-23 2.4E-27 215.1 36.6 272 349-667 38-334 (353)
135 1nir_A Nitrite reductase; hemo 99.9 4.4E-23 1.5E-27 231.0 35.9 299 329-666 158-498 (543)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-23 5.7E-28 243.5 29.5 269 353-666 110-444 (741)
137 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 4E-27 212.1 31.6 265 329-620 14-308 (343)
138 1nir_A Nitrite reductase; hemo 99.9 1.2E-22 4.2E-27 227.4 31.9 267 358-665 144-439 (543)
139 3u4y_A Uncharacterized protein 99.9 2.5E-22 8.6E-27 209.4 30.7 275 357-668 3-294 (331)
140 1xfd_A DIP, dipeptidyl aminope 99.9 8.6E-23 2.9E-27 236.7 29.3 299 330-666 37-429 (723)
141 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-22 5.2E-27 234.1 30.3 267 352-667 82-421 (706)
142 2ojh_A Uncharacterized protein 99.9 7.1E-23 2.4E-27 208.3 24.3 250 329-611 21-293 (297)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-23 6.6E-28 242.2 22.8 271 353-667 18-380 (723)
144 1ri6_A Putative isomerase YBHE 99.9 3.6E-22 1.2E-26 208.5 29.6 262 365-666 7-296 (343)
145 3o4h_A Acylamino-acid-releasin 99.9 1.2E-22 4.2E-27 229.7 25.5 259 353-668 23-303 (582)
146 1k32_A Tricorn protease; prote 99.9 4E-22 1.4E-26 240.9 30.3 273 345-668 197-493 (1045)
147 3u4y_A Uncharacterized protein 99.9 3.5E-21 1.2E-25 200.8 32.5 262 330-622 20-306 (331)
148 1k32_A Tricorn protease; prote 99.9 1.5E-21 5.1E-26 235.9 28.4 288 352-663 245-573 (1045)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 2.4E-21 8.3E-26 210.9 26.9 254 352-620 37-333 (434)
150 3hfq_A Uncharacterized protein 99.9 1.5E-20 5.1E-25 197.7 30.2 254 341-620 29-317 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 1.2E-21 4E-26 213.4 21.9 242 422-668 37-323 (434)
152 1pby_B Quinohemoprotein amine 99.9 8.7E-21 3E-25 197.4 26.4 255 364-668 2-301 (337)
153 2z3z_A Dipeptidyl aminopeptida 99.9 6.1E-21 2.1E-25 220.7 26.8 280 354-667 28-376 (706)
154 1pby_B Quinohemoprotein amine 99.9 1.6E-20 5.4E-25 195.4 27.2 237 353-624 35-314 (337)
155 3scy_A Hypothetical bacterial 99.9 2.2E-19 7.5E-24 190.0 34.9 244 350-620 48-337 (361)
156 3vgz_A Uncharacterized protein 99.9 1.7E-19 5.6E-24 189.3 33.4 248 331-611 70-335 (353)
157 1jmx_B Amine dehydrogenase; ox 99.9 3.2E-20 1.1E-24 194.3 26.8 234 356-624 4-329 (349)
158 3hfq_A Uncharacterized protein 99.9 6.8E-20 2.3E-24 192.6 29.4 237 418-667 36-306 (347)
159 3scy_A Hypothetical bacterial 99.9 4.5E-19 1.5E-23 187.6 31.5 234 420-667 48-326 (361)
160 3pe7_A Oligogalacturonate lyas 99.9 5.2E-20 1.8E-24 196.3 24.5 290 343-667 22-371 (388)
161 1z68_A Fibroblast activation p 99.8 2.2E-20 7.6E-25 216.5 20.3 264 356-667 20-376 (719)
162 1z68_A Fibroblast activation p 99.8 6.3E-20 2.1E-24 212.7 20.7 292 330-664 36-427 (719)
163 3o4h_A Acylamino-acid-releasin 99.8 3.3E-19 1.1E-23 201.5 20.6 227 420-669 20-268 (582)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-18 5.4E-23 184.1 24.5 242 352-621 40-342 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.8 2.6E-18 8.8E-23 200.0 26.7 237 354-622 19-355 (740)
166 3c5m_A Oligogalacturonate lyas 99.8 1E-18 3.4E-23 186.4 19.5 275 354-667 38-371 (396)
167 1jmx_B Amine dehydrogenase; ox 99.8 3.7E-18 1.3E-22 178.5 23.0 221 426-668 4-316 (349)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-17 4.1E-22 177.3 27.2 234 420-667 38-330 (365)
169 3azo_A Aminopeptidase; POP fam 99.8 7.3E-18 2.5E-22 193.3 27.3 276 347-666 19-356 (662)
170 3fvz_A Peptidyl-glycine alpha- 99.8 5.5E-17 1.9E-21 169.7 30.2 239 352-620 24-322 (329)
171 1q7f_A NHL, brain tumor CG1071 99.8 2.4E-16 8.1E-21 160.8 32.8 242 352-621 30-281 (286)
172 2gop_A Trilobed protease; beta 99.8 1.4E-16 4.9E-21 166.9 28.3 249 353-668 16-321 (347)
173 2dg1_A DRP35, lactonase; beta 99.8 1.2E-16 4.2E-21 166.6 27.1 269 352-667 6-300 (333)
174 4a5s_A Dipeptidyl peptidase 4 99.8 2.7E-17 9.4E-22 191.3 22.1 197 422-622 17-296 (740)
175 3fvz_A Peptidyl-glycine alpha- 99.7 7.8E-16 2.7E-20 160.9 29.3 234 421-668 23-313 (329)
176 2oiz_A Aromatic amine dehydrog 99.7 8.5E-16 2.9E-20 162.9 27.3 250 362-659 14-360 (361)
177 3e5z_A Putative gluconolactona 99.7 1.7E-15 5.8E-20 155.4 28.7 237 347-620 23-286 (296)
178 3azo_A Aminopeptidase; POP fam 99.7 2.7E-16 9.3E-21 180.2 25.2 201 420-622 128-371 (662)
179 2gop_A Trilobed protease; beta 99.7 9.8E-16 3.4E-20 160.5 26.4 223 352-619 59-330 (347)
180 2z2n_A Virginiamycin B lyase; 99.7 4.8E-14 1.6E-18 143.8 37.7 271 346-665 9-284 (299)
181 3pe7_A Oligogalacturonate lyas 99.7 2.9E-16 9.9E-21 167.2 21.8 209 413-623 22-276 (388)
182 2xdw_A Prolyl endopeptidase; a 99.7 1.2E-15 4.2E-20 176.5 28.2 240 353-622 126-416 (710)
183 1q7f_A NHL, brain tumor CG1071 99.7 7.4E-15 2.5E-19 149.6 29.9 231 419-668 27-271 (286)
184 1rwi_B Serine/threonine-protei 99.7 3.4E-15 1.2E-19 150.4 26.4 240 353-622 25-266 (270)
185 3e5z_A Putative gluconolactona 99.7 6.4E-15 2.2E-19 151.1 28.3 233 413-668 19-278 (296)
186 2dg1_A DRP35, lactonase; beta 99.7 6.4E-14 2.2E-18 145.9 35.3 238 343-611 36-301 (333)
187 2xdw_A Prolyl endopeptidase; a 99.7 1.3E-14 4.4E-19 167.9 29.8 229 419-664 122-397 (710)
188 3c5m_A Oligogalacturonate lyas 99.7 1E-15 3.5E-20 163.0 17.9 249 356-619 85-381 (396)
189 2oiz_A Aromatic amine dehydrog 99.6 3E-14 1E-18 151.0 26.2 220 356-602 54-360 (361)
190 2bkl_A Prolyl endopeptidase; m 99.6 3.8E-15 1.3E-19 171.9 20.7 239 353-623 122-400 (695)
191 3no2_A Uncharacterized protein 99.6 1.3E-13 4.5E-18 140.3 27.8 213 362-608 4-231 (276)
192 2qc5_A Streptogramin B lactona 99.6 2.6E-12 8.9E-17 130.8 36.9 270 349-665 17-290 (300)
193 1rwi_B Serine/threonine-protei 99.6 8.6E-14 2.9E-18 140.1 25.4 230 423-668 25-255 (270)
194 2bkl_A Prolyl endopeptidase; m 99.6 1.8E-14 6E-19 166.4 22.6 225 419-663 118-379 (695)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.1E-13 2.1E-17 136.9 30.0 246 348-621 14-300 (314)
196 2z2n_A Virginiamycin B lyase; 99.6 4.9E-12 1.7E-16 128.7 34.7 254 331-620 37-295 (299)
197 3no2_A Uncharacterized protein 99.6 3E-13 1E-17 137.6 24.5 190 432-627 4-202 (276)
198 1qks_A Cytochrome CD1 nitrite 99.6 1.5E-11 5.1E-16 137.5 39.3 284 348-666 193-522 (567)
199 1yr2_A Prolyl oligopeptidase; 99.6 1.6E-13 5.5E-18 159.5 24.2 238 353-622 164-443 (741)
200 3dsm_A Uncharacterized protein 99.6 2.4E-12 8.2E-17 134.3 29.6 223 422-664 44-285 (328)
201 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.9E-17 136.0 27.8 234 354-623 46-304 (328)
202 1yr2_A Prolyl oligopeptidase; 99.5 5.8E-13 2E-17 154.8 26.1 226 420-663 161-423 (741)
203 1qks_A Cytochrome CD1 nitrite 99.5 2.1E-11 7.4E-16 136.2 36.8 266 361-665 165-458 (567)
204 3hrp_A Uncharacterized protein 99.5 6.5E-12 2.2E-16 135.2 30.3 233 353-618 132-408 (409)
205 3g4e_A Regucalcin; six bladed 99.5 1.3E-11 4.5E-16 126.6 30.7 225 353-609 14-261 (297)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8.3E-12 2.8E-16 128.4 29.1 230 418-666 14-287 (314)
207 2qc5_A Streptogramin B lactona 99.5 8.1E-11 2.8E-15 119.7 33.4 235 350-618 60-298 (300)
208 1xip_A Nucleoporin NUP159; bet 99.5 8.4E-13 2.9E-17 139.7 18.2 172 423-608 39-232 (388)
209 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-12 4.8E-17 138.0 19.0 182 353-565 39-231 (388)
210 3dr2_A Exported gluconolactona 99.5 2.1E-11 7.3E-16 125.5 27.1 232 346-614 39-301 (305)
211 3g4e_A Regucalcin; six bladed 99.5 7.8E-11 2.7E-15 120.8 30.8 227 420-666 11-261 (297)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 9E-11 3.1E-15 122.2 31.2 222 353-610 50-292 (326)
213 3hrp_A Uncharacterized protein 99.4 2.9E-11 9.8E-16 130.1 27.9 241 422-667 131-400 (409)
214 2mad_H Methylamine dehydrogena 99.4 1.9E-10 6.6E-15 122.0 32.9 241 356-624 70-354 (373)
215 2ghs_A AGR_C_1268P; regucalcin 99.4 1.8E-10 6E-15 120.0 31.2 221 423-666 50-291 (326)
216 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-11 4E-16 142.6 23.6 236 353-622 130-407 (693)
217 3dr2_A Exported gluconolactona 99.4 7.1E-11 2.4E-15 121.6 25.0 230 414-668 37-298 (305)
218 2mad_H Methylamine dehydrogena 99.4 1.3E-09 4.4E-14 115.7 34.5 219 426-666 70-338 (373)
219 2qe8_A Uncharacterized protein 99.4 3.8E-11 1.3E-15 125.9 21.3 265 352-666 17-310 (343)
220 3sjl_D Methylamine dehydrogena 99.3 2.8E-10 9.7E-15 119.8 25.4 243 356-624 82-367 (386)
221 3iuj_A Prolyl endopeptidase; h 99.3 7.8E-11 2.7E-15 135.7 22.6 197 420-621 127-360 (693)
222 3sjl_D Methylamine dehydrogena 99.3 8.6E-10 3E-14 116.1 25.1 257 359-665 40-350 (386)
223 3c75_H MADH, methylamine dehyd 99.2 2E-09 6.7E-14 115.4 26.0 198 426-624 122-406 (426)
224 2hz6_A Endoplasmic reticulum t 99.2 5.9E-12 2E-16 133.6 4.2 184 432-624 8-196 (369)
225 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.4E-16 131.0 5.5 204 362-603 8-217 (369)
226 2qe8_A Uncharacterized protein 99.1 3.6E-09 1.2E-13 110.8 18.5 231 350-617 65-318 (343)
227 1yiq_A Quinohemoprotein alcoho 99.1 1.8E-08 6.2E-13 115.6 25.7 184 442-626 182-511 (689)
228 2ece_A 462AA long hypothetical 99.0 3.8E-08 1.3E-12 104.4 25.3 226 358-608 88-399 (462)
229 1kb0_A Quinohemoprotein alcoho 99.0 1.8E-08 6.3E-13 115.3 24.8 241 362-627 127-514 (677)
230 1npe_A Nidogen, entactin; glyc 99.0 4.9E-07 1.7E-11 90.6 32.4 221 422-659 36-263 (267)
231 2ece_A 462AA long hypothetical 99.0 4.6E-08 1.6E-12 103.8 24.9 233 431-665 93-399 (462)
232 1mda_H Methylamine dehydrogena 99.0 1.4E-08 4.8E-13 106.9 21.0 194 426-624 69-350 (368)
233 3hxj_A Pyrrolo-quinoline quino 99.0 9.8E-09 3.4E-13 105.9 19.4 209 433-668 107-315 (330)
234 2fp8_A Strictosidine synthase; 99.0 2.9E-07 1E-11 95.1 28.4 268 340-621 7-314 (322)
235 1fwx_A Nitrous oxide reductase 99.0 1.3E-08 4.5E-13 111.6 18.2 228 431-666 99-407 (595)
236 3c75_H MADH, methylamine dehyd 98.9 1E-07 3.5E-12 102.0 22.8 186 431-622 82-297 (426)
237 3hxj_A Pyrrolo-quinoline quino 98.9 1.4E-07 4.8E-12 97.2 22.6 218 363-620 107-324 (330)
238 1kb0_A Quinohemoprotein alcoho 98.9 1.6E-07 5.6E-12 107.3 24.8 153 433-586 128-354 (677)
239 1npe_A Nidogen, entactin; glyc 98.9 3.1E-06 1.1E-10 84.7 31.3 220 353-602 37-263 (267)
240 1yiq_A Quinohemoprotein alcoho 98.9 1.1E-07 3.7E-12 109.1 22.9 151 433-584 121-344 (689)
241 2iwa_A Glutamine cyclotransfer 98.9 4.7E-07 1.6E-11 90.3 24.0 194 423-621 22-238 (266)
242 1mda_H Methylamine dehydrogena 98.9 9.7E-08 3.3E-12 100.5 19.8 210 356-599 69-366 (368)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.7E-06 9.1E-11 89.7 30.2 225 362-624 102-341 (376)
244 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.1E-06 7.1E-11 90.5 27.9 187 432-626 102-302 (376)
245 2p4o_A Hypothetical protein; p 98.8 9E-06 3.1E-10 83.2 31.4 227 351-611 31-279 (306)
246 4a2l_A BT_4663, two-component 98.7 3.4E-05 1.2E-09 90.0 38.2 276 351-664 214-515 (795)
247 1fwx_A Nitrous oxide reductase 98.7 4.3E-07 1.5E-11 99.6 19.8 232 361-622 99-433 (595)
248 1k3i_A Galactose oxidase precu 98.7 5.5E-07 1.9E-11 102.8 21.6 272 356-666 190-530 (656)
249 3nol_A Glutamine cyclotransfer 98.7 3.2E-06 1.1E-10 83.4 23.9 186 419-610 38-245 (262)
250 4a2l_A BT_4663, two-component 98.7 4.4E-05 1.5E-09 89.0 36.8 269 352-664 310-603 (795)
251 2fp8_A Strictosidine synthase; 98.7 5.8E-06 2E-10 85.2 25.9 193 422-619 19-268 (322)
252 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.7E-10 80.5 25.7 194 354-579 23-238 (266)
253 3mbr_X Glutamine cyclotransfer 98.6 1.4E-05 4.7E-10 78.2 24.7 186 419-610 16-224 (243)
254 2xbg_A YCF48-like protein; pho 98.6 0.00045 1.5E-08 71.3 37.9 268 349-665 33-311 (327)
255 2p4o_A Hypothetical protein; p 98.6 2.7E-05 9.4E-10 79.6 28.1 227 422-667 32-278 (306)
256 1kv9_A Type II quinohemoprotei 98.6 6.5E-06 2.2E-10 93.9 25.2 185 442-627 177-495 (668)
257 3nol_A Glutamine cyclotransfer 98.6 9.3E-06 3.2E-10 80.1 22.6 201 455-665 33-243 (262)
258 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.9E-10 79.4 22.9 180 422-609 55-254 (268)
259 3v64_C Agrin; beta propeller, 98.6 0.00011 3.7E-09 76.7 31.8 201 421-622 72-277 (349)
260 2ad6_A Methanol dehydrogenase 98.5 2.1E-05 7.1E-10 87.9 27.2 193 434-627 161-501 (571)
261 3v65_B Low-density lipoprotein 98.5 0.00013 4.6E-09 77.2 31.7 202 421-623 115-321 (386)
262 1kv9_A Type II quinohemoprotei 98.5 1.5E-05 5.1E-10 91.0 25.2 152 433-585 117-340 (668)
263 3qqz_A Putative uncharacterize 98.5 8.7E-05 3E-09 73.4 27.1 199 416-617 21-250 (255)
264 2xe4_A Oligopeptidase B; hydro 98.5 1.1E-05 3.8E-10 93.4 23.9 239 353-622 175-460 (751)
265 1ijq_A LDL receptor, low-densi 98.5 0.00076 2.6E-08 69.2 34.6 201 421-623 29-241 (316)
266 1w6s_A Methanol dehydrogenase 98.4 5.8E-05 2E-09 84.5 27.2 186 441-627 180-510 (599)
267 3tc9_A Hypothetical hydrolase; 98.4 6.2E-05 2.1E-09 81.0 26.4 235 353-619 138-429 (430)
268 3v9f_A Two-component system se 98.4 0.00029 1E-08 81.8 34.0 280 351-663 257-555 (781)
269 3v9f_A Two-component system se 98.4 0.00021 7.3E-09 83.0 32.4 244 351-621 312-569 (781)
270 3nok_A Glutaminyl cyclase; bet 98.4 2.3E-05 7.7E-10 77.3 20.1 190 466-665 57-254 (268)
271 3mbr_X Glutamine cyclotransfer 98.4 0.0001 3.6E-09 71.9 24.7 199 456-664 12-222 (243)
272 2xe4_A Oligopeptidase B; hydro 98.4 1.3E-05 4.4E-10 92.8 20.8 190 423-616 175-394 (751)
273 3p5b_L Low density lipoprotein 98.3 0.0015 5.1E-08 69.4 34.5 205 419-624 109-324 (400)
274 3v64_C Agrin; beta propeller, 98.3 0.0003 1E-08 73.4 28.5 210 348-586 69-283 (349)
275 4hw6_A Hypothetical protein, I 98.3 0.00018 6.2E-09 77.4 27.2 235 353-619 140-432 (433)
276 1flg_A Protein (quinoprotein e 98.3 0.00016 5.5E-09 80.9 26.7 142 485-627 291-523 (582)
277 1w6s_A Methanol dehydrogenase 98.3 0.00018 6E-09 80.6 26.2 148 436-586 124-350 (599)
278 3v65_B Low-density lipoprotein 98.3 0.00042 1.4E-08 73.3 27.6 211 348-587 112-327 (386)
279 2ad6_A Methanol dehydrogenase 98.2 0.00026 8.8E-09 79.1 27.0 151 433-586 115-343 (571)
280 1ijq_A LDL receptor, low-densi 98.2 0.0033 1.1E-07 64.4 32.8 183 435-620 3-195 (316)
281 3sov_A LRP-6, low-density lipo 98.2 0.0011 3.8E-08 68.0 29.1 201 422-623 35-241 (318)
282 3p5b_L Low density lipoprotein 98.2 0.0028 9.7E-08 67.2 32.8 225 347-596 107-338 (400)
283 3tc9_A Hypothetical hydrolase; 98.2 0.00055 1.9E-08 73.5 26.6 193 423-617 138-368 (430)
284 3sov_A LRP-6, low-density lipo 98.1 0.0015 5E-08 67.1 27.6 207 353-587 36-247 (318)
285 3qqz_A Putative uncharacterize 98.1 0.0029 1E-07 62.4 28.5 197 349-576 24-251 (255)
286 4hw6_A Hypothetical protein, I 98.1 0.0011 3.6E-08 71.4 27.4 194 423-618 140-372 (433)
287 1k3i_A Galactose oxidase precu 98.0 5.4E-05 1.8E-09 86.2 16.3 228 426-667 190-476 (656)
288 2xbg_A YCF48-like protein; pho 98.0 0.0036 1.2E-07 64.4 28.4 189 422-618 122-320 (327)
289 3kya_A Putative phosphatase; s 98.0 0.0028 9.7E-08 68.6 27.9 239 353-623 140-478 (496)
290 1flg_A Protein (quinoprotein e 98.0 0.00054 1.9E-08 76.6 23.1 178 426-605 250-544 (582)
291 2p9w_A MAL S 1 allergenic prot 97.9 0.0018 6.2E-08 65.9 23.5 194 425-620 16-265 (334)
292 3amr_A 3-phytase; beta-propell 97.9 0.0022 7.5E-08 65.8 23.9 184 432-619 39-262 (355)
293 3m0c_C LDL receptor, low-densi 97.9 0.01 3.4E-07 68.5 32.0 205 418-623 420-635 (791)
294 3m0c_C LDL receptor, low-densi 97.9 0.0069 2.4E-07 69.8 29.3 215 347-586 419-640 (791)
295 2ism_A Putative oxidoreductase 97.8 0.0087 3E-07 62.2 26.8 231 349-608 28-333 (352)
296 2ism_A Putative oxidoreductase 97.8 0.0079 2.7E-07 62.5 25.6 229 422-665 31-333 (352)
297 3a9g_A Putative uncharacterize 97.7 0.025 8.4E-07 58.8 28.7 235 347-608 24-330 (354)
298 3amr_A 3-phytase; beta-propell 97.7 0.0077 2.6E-07 61.8 23.8 193 362-586 39-272 (355)
299 3kya_A Putative phosphatase; s 97.7 0.016 5.6E-07 62.6 27.2 195 423-618 140-408 (496)
300 4a0p_A LRP6, LRP-6, low-densit 97.7 0.057 2E-06 60.6 32.2 199 422-623 37-240 (628)
301 2vpj_A Kelch-like protein 12; 97.6 0.0042 1.4E-07 62.7 20.9 207 443-668 31-264 (301)
302 3a9g_A Putative uncharacterize 97.6 0.027 9.2E-07 58.5 27.5 231 421-665 28-330 (354)
303 3s94_A LRP-6, low-density lipo 97.6 0.029 9.8E-07 63.0 29.5 202 421-623 39-246 (619)
304 1n7d_A LDL receptor, low-densi 97.6 0.00042 1.4E-08 79.2 14.4 201 422-623 406-617 (699)
305 2g8s_A Glucose/sorbosone dehyd 97.6 0.037 1.3E-06 57.4 27.3 242 351-618 17-350 (353)
306 1bpo_A Protein (clathrin); cla 97.5 0.12 4.1E-06 54.2 32.0 233 357-622 71-333 (494)
307 3s94_A LRP-6, low-density lipo 97.5 0.021 7.1E-07 64.1 26.6 207 350-584 38-249 (619)
308 3das_A Putative oxidoreductase 97.5 0.11 3.7E-06 53.6 30.1 239 346-608 26-326 (347)
309 2p9w_A MAL S 1 allergenic prot 97.5 0.009 3.1E-07 60.8 21.1 159 461-620 10-215 (334)
310 2xzh_A Clathrin heavy chain 1; 97.5 0.099 3.4E-06 52.8 31.8 232 358-622 73-334 (365)
311 3ii7_A Kelch-like protein 7; p 97.5 0.008 2.7E-07 60.8 21.0 212 435-668 14-258 (306)
312 1n7d_A LDL receptor, low-densi 97.5 0.00047 1.6E-08 78.8 12.6 222 351-597 405-633 (699)
313 2vpj_A Kelch-like protein 12; 97.5 0.0058 2E-07 61.6 19.5 182 432-621 62-279 (301)
314 2xn4_A Kelch-like protein 2; s 97.4 0.011 3.7E-07 59.7 20.5 204 443-668 30-262 (302)
315 3sre_A PON1, serum paraoxonase 97.4 0.025 8.5E-07 58.6 23.2 191 423-617 51-295 (355)
316 4a0p_A LRP6, LRP-6, low-densit 97.4 0.11 3.8E-06 58.3 29.6 203 352-585 37-244 (628)
317 3ii7_A Kelch-like protein 7; p 97.3 0.023 7.7E-07 57.4 21.8 185 432-621 55-273 (306)
318 2xn4_A Kelch-like protein 2; s 97.3 0.014 4.7E-07 58.9 19.9 182 432-621 61-277 (302)
319 3sre_A PON1, serum paraoxonase 97.2 0.051 1.8E-06 56.2 23.0 151 422-576 112-296 (355)
320 3ott_A Two-component system se 97.2 0.52 1.8E-05 54.0 34.7 231 351-621 21-261 (758)
321 1zgk_A Kelch-like ECH-associat 97.2 0.016 5.4E-07 58.7 18.6 214 432-668 24-273 (308)
322 3das_A Putative oxidoreductase 97.1 0.31 1.1E-05 50.1 30.9 240 413-665 23-326 (347)
323 1cru_A Protein (soluble quinop 97.1 0.29 9.9E-06 52.5 28.6 114 349-482 24-162 (454)
324 2g8s_A Glucose/sorbosone dehyd 97.1 0.081 2.8E-06 54.8 23.2 229 421-664 17-340 (353)
325 3pbp_A Nucleoporin NUP82; beta 97.1 0.068 2.3E-06 56.0 21.6 140 474-616 31-208 (452)
326 2xzh_A Clathrin heavy chain 1; 97.1 0.33 1.1E-05 49.0 28.6 230 428-667 73-332 (365)
327 1bpo_A Protein (clathrin); cla 97.0 0.45 1.5E-05 49.9 29.7 230 428-667 72-331 (494)
328 4asc_A Kelch repeat and BTB do 97.0 0.05 1.7E-06 55.1 20.2 186 430-621 43-278 (315)
329 1cru_A Protein (soluble quinop 97.0 0.33 1.1E-05 52.0 27.4 104 421-524 26-162 (454)
330 3pbp_A Nucleoporin NUP82; beta 97.0 0.029 1E-06 58.7 18.0 145 514-665 29-198 (452)
331 4asc_A Kelch repeat and BTB do 96.9 0.079 2.7E-06 53.6 20.6 180 436-621 8-222 (315)
332 1zgk_A Kelch-like ECH-associat 96.8 0.049 1.7E-06 55.0 18.5 182 432-621 70-288 (308)
333 1tl2_A L10, protein (tachylect 96.8 0.092 3.2E-06 49.9 18.0 177 433-620 4-208 (236)
334 2woz_A Kelch repeat and BTB do 96.6 0.18 6.1E-06 51.0 20.7 205 444-668 25-264 (318)
335 3s25_A Hypothetical 7-bladed b 96.6 0.26 9.1E-06 49.7 21.6 176 427-621 58-256 (302)
336 3ei3_A DNA damage-binding prot 96.6 2 7E-05 51.5 34.7 174 444-621 808-1000(1158)
337 3ei3_A DNA damage-binding prot 96.5 2.2 7.4E-05 51.3 34.4 240 348-619 550-872 (1158)
338 2woz_A Kelch repeat and BTB do 96.5 0.18 6.1E-06 51.0 20.3 185 430-621 54-288 (318)
339 2uvk_A YJHT; unknown function, 96.4 0.065 2.2E-06 55.3 16.0 219 432-668 19-327 (357)
340 1xi4_A Clathrin heavy chain; a 96.3 0.14 4.9E-06 61.3 19.6 229 359-620 73-331 (1630)
341 3ott_A Two-component system se 96.3 2.2 7.6E-05 48.7 35.3 224 352-617 63-304 (758)
342 3s25_A Hypothetical 7-bladed b 96.1 0.74 2.5E-05 46.3 21.7 172 431-621 23-217 (302)
343 2uvk_A YJHT; unknown function, 95.9 0.18 6.3E-06 51.8 16.6 189 432-623 65-345 (357)
344 1xi4_A Clathrin heavy chain; a 95.9 0.29 1E-05 58.7 19.5 229 429-667 73-331 (1630)
345 1tl2_A L10, protein (tachylect 95.9 0.14 4.6E-06 48.8 13.7 142 422-572 41-204 (236)
346 2be1_A Serine/threonine-protei 95.4 0.026 9E-07 57.9 7.6 189 434-625 11-236 (339)
347 2be1_A Serine/threonine-protei 95.4 0.23 7.9E-06 50.8 14.6 141 440-583 64-236 (339)
348 3qhy_B Beta-lactamase inhibito 95.2 0.55 1.9E-05 46.7 16.4 184 423-621 64-247 (282)
349 3sbq_A Nitrous-oxide reductase 95.1 0.19 6.6E-06 54.2 13.1 188 432-621 141-409 (638)
350 2zwa_A Leucine carboxyl methyl 94.8 1.8 6.1E-05 49.0 21.3 150 432-581 451-638 (695)
351 3sbq_A Nitrous-oxide reductase 94.3 7 0.00024 42.4 22.4 220 436-659 73-390 (638)
352 2zwa_A Leucine carboxyl methyl 93.9 1.4 4.8E-05 50.0 17.8 191 431-622 396-637 (695)
353 2wg3_C Hedgehog-interacting pr 93.1 11 0.00036 40.3 27.3 248 352-619 14-370 (463)
354 3qhy_B Beta-lactamase inhibito 92.7 3.7 0.00013 40.6 16.6 185 423-622 25-209 (282)
355 1uuj_A Platelet-activating fac 91.0 0.2 6.9E-06 39.6 3.9 30 3-32 10-39 (88)
356 2xtc_A F-box-like/WD repeat-co 83.0 1.4 4.6E-05 35.2 4.3 35 1-35 3-37 (90)
357 4gq2_M Nucleoporin NUP120; bet 82.5 20 0.00067 42.1 16.1 39 506-544 236-274 (950)
358 2wg3_C Hedgehog-interacting pr 80.7 62 0.0021 34.3 27.2 238 422-665 14-354 (463)
359 1suu_A DNA gyrase subunit A; t 80.4 49 0.0017 32.9 26.3 186 431-620 6-231 (312)
360 4hvt_A Ritya.17583.B, post-pro 78.7 91 0.0031 35.0 22.6 173 443-619 216-429 (711)
361 3no0_A DNA gyrase subunit A; D 78.6 52 0.0018 32.1 21.6 196 422-620 24-246 (276)
362 3b7f_A Glycosyl hydrolase, BNR 78.3 63 0.0021 32.9 24.2 182 421-608 54-297 (394)
363 3no0_A DNA gyrase subunit A; D 76.8 58 0.002 31.7 18.9 155 421-577 67-245 (276)
364 1iap_A Guanine nucleotide exch 73.3 3.4 0.00012 38.1 4.5 43 74-125 21-63 (211)
365 4gq2_M Nucleoporin NUP120; bet 72.5 1.5E+02 0.0051 34.5 23.0 37 549-585 237-273 (950)
366 3uc1_A DNA gyrase subunit A; D 66.1 1.1E+02 0.0038 30.5 22.4 145 432-577 108-278 (327)
367 3uc1_A DNA gyrase subunit A; D 65.0 1.2E+02 0.004 30.4 22.1 197 422-620 42-279 (327)
368 1suu_A DNA gyrase subunit A; t 63.7 1.2E+02 0.0041 30.0 26.4 235 361-618 6-281 (312)
369 3l6v_A GYRA, DNA gyrase subuni 63.0 1.4E+02 0.0047 30.5 23.8 188 430-620 4-265 (370)
370 1wp5_A Topoisomerase IV; broke 60.9 1.4E+02 0.0047 29.8 25.0 188 431-620 3-225 (323)
371 3b7f_A Glycosyl hydrolase, BNR 60.9 1.5E+02 0.005 30.1 23.2 173 434-611 23-254 (394)
372 1zi0_A DNA gyrase subunit A; b 59.2 1.4E+02 0.0048 29.4 26.1 238 361-620 1-277 (307)
373 3cx8_B RHO guanine nucleotide 59.2 4.5 0.00015 37.2 2.4 32 94-125 50-81 (203)
374 1zi0_A DNA gyrase subunit A; b 57.1 1.5E+02 0.0052 29.1 26.5 187 431-620 1-226 (307)
375 3ab3_B RHO guanine nucleotide 56.8 2.8 9.4E-05 39.5 0.6 32 94-125 86-117 (246)
376 4hvt_A Ritya.17583.B, post-pro 54.2 2.7E+02 0.0092 31.1 22.8 194 424-621 131-382 (711)
377 4fhn_B Nucleoporin NUP120; pro 53.4 37 0.0013 40.7 9.8 39 506-544 238-276 (1139)
378 4fhn_B Nucleoporin NUP120; pro 52.2 34 0.0012 40.9 9.2 38 549-586 239-276 (1139)
379 1sqj_A OXG-RCBH, oligoxylogluc 51.1 3.1E+02 0.011 30.9 28.1 146 351-526 14-190 (789)
380 3kci_A Probable E3 ubiquitin-p 50.3 2.2E+02 0.0074 28.9 28.1 194 423-622 106-347 (389)
381 2d68_A FOP, FGFR1OP; alpha hel 50.1 17 0.00057 28.4 3.9 29 5-33 20-48 (82)
382 3q6k_A 43.2 kDa salivary prote 49.3 2.3E+02 0.0079 28.9 24.7 187 444-665 124-342 (381)
383 3zwu_A Alkaline phosphatase PH 48.8 66 0.0023 35.2 10.0 60 506-565 476-548 (592)
384 4a9v_A PHOX; hydrolase, beta-p 47.1 70 0.0024 34.8 9.6 61 506-566 476-549 (592)
385 3zwu_A Alkaline phosphatase PH 44.2 70 0.0024 35.0 9.3 59 549-607 477-548 (592)
386 3f7f_A Nucleoporin NUP120; nuc 40.3 1.2E+02 0.004 33.9 10.4 38 422-461 222-259 (729)
387 3l6v_A GYRA, DNA gyrase subuni 40.2 3.1E+02 0.011 27.8 27.4 239 360-620 4-316 (370)
388 3f7f_A Nucleoporin NUP120; nuc 37.4 44 0.0015 37.4 6.4 37 507-545 223-259 (729)
389 4a9v_A PHOX; hydrolase, beta-p 33.9 1.7E+02 0.0057 31.9 10.0 60 549-608 477-549 (592)
390 3kci_A Probable E3 ubiquitin-p 33.4 3.9E+02 0.013 26.9 28.1 192 423-620 54-293 (389)
391 1sqj_A OXG-RCBH, oligoxylogluc 29.4 6.5E+02 0.022 28.3 26.7 146 421-568 14-190 (789)
392 1zvt_A Topoisomerase IV subuni 28.6 3.8E+02 0.013 25.4 14.4 142 477-620 4-163 (256)
393 2cn3_A Xyloglucanase, beta-1,4 25.2 7.3E+02 0.025 27.5 19.9 191 464-666 23-263 (737)
394 1zvt_A Topoisomerase IV subuni 23.8 4.7E+02 0.016 24.7 12.8 141 435-577 4-162 (256)
395 3mvd_K Regulator of chromosome 23.3 5.9E+02 0.02 25.7 34.9 272 370-667 40-374 (423)
396 1wp5_A Topoisomerase IV; broke 21.1 6E+02 0.02 25.0 27.4 233 361-620 3-277 (323)
397 2eap_A Lymphocyte cytosolic pr 20.6 67 0.0023 25.2 2.8 18 9-26 26-43 (90)
398 3mez_B Mannose-specific lectin 20.4 3.4E+02 0.012 21.9 9.6 82 516-617 23-105 (113)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-44 Score=391.94 Aligned_cols=282 Identities=29% Similarity=0.506 Sum_probs=265.2
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
+++.+|.++|+|++|+|++++||+|+.||.|+|||+.+ ......+.+|.+.|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V 153 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSV 153 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCE
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcE
Confidence 35678999999999999999999999999999999875 23446678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
++++|+|++++|++|+.||+|++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++..+.+|
T Consensus 154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC--------------------CCEEEE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMAS 564 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~--------------------g~~l~s 564 (670)
...|.+++|+|++++|++|+.|++|++||+.++++...+.+|...|.+++|+|+ |.+|++
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999996 679999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
|+.||.|++||++++.++..+.+|...|++++|+|+|.+|++|+.||+|++||+.++. .+..+..
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------------~~~~~~~ 378 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------------CMKTLNA 378 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------------CCEEEEC
T ss_pred EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999997653 3456678
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
|...|.+++|+|++.+|++|+.||+
T Consensus 379 h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 379 HEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 8899999999999999999999985
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=371.26 Aligned_cols=285 Identities=22% Similarity=0.368 Sum_probs=262.0
Q ss_pred EEEeecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 344 FYTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
+....+|.+.|++++|+|+ +.+||+|+.|++|+||++.... ......+.+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--------------------------~~~~~~l~g 78 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--------------------------LDLQWSLEG 78 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--------------------------EEEEEEECC
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--------------------------eeeeeeecc
Confidence 3455678999999999974 6799999999999999986411 123345789
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+++++|+|++.+|++|+.||.|++|++++++...
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
.+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.||.|++||++++
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
..+..+.+|...|.+++|+|++.+|++|+.||+|+|||+.++. .+..+..|...|.+++|+|++.
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---------------~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---------------CVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------EEEEECCCSSCEEEEEECTTSS
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---------------EEEEEcCCCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999999999998764 3456678889999999999999
Q ss_pred EEEEeeCCCC
Q 005913 660 LFAAGALSKT 669 (670)
Q Consensus 660 ~La~gs~dgs 669 (670)
+|++|+.||+
T Consensus 304 ~l~s~~~d~~ 313 (321)
T 3ow8_A 304 KIVSVGDDQE 313 (321)
T ss_dssp EEEEEETTCC
T ss_pred EEEEEeCCCe
Confidence 9999999986
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-43 Score=364.29 Aligned_cols=283 Identities=23% Similarity=0.362 Sum_probs=256.1
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
..++.+|.+.|++++|+|++++||+|+.||.|+|||+.+ ......+.+|..+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP 57 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence 346888999999999999999999999999999999875 2345677889999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEec
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA 502 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~ 502 (670)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++ .....+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4556788
Q ss_pred ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEeCCC
Q 005913 503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 503 ~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~ 578 (670)
+|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+| ++.+|++|+.||.|++||+++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 9999999999999 67899999999999999999887665554 5667899999987 778999999999999999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+.. .+..+..+...+.+++|+|++
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---------------VEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---------------EEEEECCSSSSEEEEEECTTC
T ss_pred CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------eeeeccCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999999998764 345666778899999999987
Q ss_pred c--EEEEeeCCCC
Q 005913 659 L--LFAAGALSKT 669 (670)
Q Consensus 659 ~--~La~gs~dgs 669 (670)
. ++|+|+.+|.
T Consensus 283 ~~~~~asg~~~g~ 295 (304)
T 2ynn_A 283 RKNYIASGFDNGF 295 (304)
T ss_dssp GGGCEEEEETTEE
T ss_pred CceEEEEecCCce
Confidence 5 6899988763
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-42 Score=365.82 Aligned_cols=284 Identities=21% Similarity=0.366 Sum_probs=258.5
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
.+..++.+|.+.|++++|+||+++|++|+.||.|+|||+.+ ......+..|.
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~ 97 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRS 97 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCC
Confidence 34567889999999999999999999999999999999864 23455677899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
..|.+++|+|++++|++|+.|+.|++|++.+.. ....+.+|...|.++.|++++. +++++.|++|++||+.++++
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence 999999999999999999999999999998753 4566789999999999998875 89999999999999999999
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
+..+.+|...|.+++|+|+++++++|+.|++|++||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913 578 SGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 655 (670)
Q Consensus 578 ~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 655 (670)
+++.+..+.. +...|++++|+|+|++|++|+.||.|++||+.+... +..+..|..+|.+++|+
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR---------------AGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------EEEEECCSSCEEEEEEC
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE---------------eeEeecCCCcEEEEEEc
Confidence 9988877653 335799999999999999999999999999877542 44567889999999999
Q ss_pred cCCcEEEEeeCCCC
Q 005913 656 RRNLLFAAGALSKT 669 (670)
Q Consensus 656 ~~~~~La~gs~dgs 669 (670)
|+|.+||+|+.||+
T Consensus 322 ~dg~~l~s~s~D~~ 335 (340)
T 1got_B 322 DDGMAVATGSWDSF 335 (340)
T ss_dssp TTSSCEEEEETTSC
T ss_pred CCCCEEEEEcCCcc
Confidence 99999999999986
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=361.30 Aligned_cols=285 Identities=24% Similarity=0.370 Sum_probs=257.5
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
....++.+|.+.|+|++|+||+++||+|+.||.|+|||..+ ......+..|.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~ 106 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPC 106 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCC
Confidence 34557889999999999999999999999999999999764 12344566788
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~ 495 (670)
..|.+++|+|++.+|++|+.|+.+++|++... .....+.+|...|.++.|+|++..|++++.|++|++||++++
T Consensus 107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999999999999999999998643 345677789999999999999999999999999999999999
Q ss_pred ceeEEecccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 496 QPLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
+.+..+.+|...|.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|.+++|+|++.+|++|+.||.|++
T Consensus 187 ~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266 (354)
T ss_dssp CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence 99999999999999999987 5789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 574 WDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 574 wDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
||+++++.+..+..+ ...+.+++|+|+|.+|++|+.||+|++||+.++.. +..+..|..+|.+
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~---------------~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR---------------VSILFGHENRVST 331 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEE
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce---------------EEEEECCCCcEEE
Confidence 999999887776544 35789999999999999999999999999977642 4456788999999
Q ss_pred EEEecCCcEEEEeeCCCC
Q 005913 652 LQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 652 l~fs~~~~~La~gs~dgs 669 (670)
++|+|+|.+||+|+.||+
T Consensus 332 l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 332 LRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp EEECTTSSCEEEEETTSE
T ss_pred EEECCCCCEEEEEcCCCC
Confidence 999999999999999985
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=355.80 Aligned_cols=296 Identities=22% Similarity=0.412 Sum_probs=248.1
Q ss_pred eEEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 343 ~~~t~~~~~~-~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
+..++.+|.+ .|.+++|+|+|++||+|+.|+.|+||++..... ........+|.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~ 61 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ 61 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence 4456777877 899999999999999999999999999864210 01122346899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc---
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--- 496 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--- 496 (670)
+.|.+++|+|++++|++|+.|++|++|++..+. ++..+.+|..+|.+++|+|++.+|++|+.|++|++||++...
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 999999999999999999999999999998764 567888999999999999999999999999999999998764
Q ss_pred eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
.+..+.+|...|.+++|+|++++|++|+.|++|++||.+++. +...+.+|...|.+++|+|+|++|++|+.||.|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 456778999999999999999999999999999999998875 456788999999999999999999999999999999
Q ss_pred eCCCC---------------eeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 575 DLASG---------------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 575 Dl~~~---------------~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
|.... .++..+.+ |...|++++|+|++..|++++.|+.|++|+.......... .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------~~~~~ 295 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP------TFSLT 295 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC------CEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee------eEEEE
Confidence 96321 33445554 8899999999999999999999999999998765321100 00001
Q ss_pred ccccCCCCCCeEEEEEecCC-cEEEEeeCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~-~~La~gs~dgs 669 (670)
......|...|.+++|+|++ .+||+|+.||+
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 22345788899999999998 59999999986
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=100.00 E-value=5.5e-44 Score=321.77 Aligned_cols=139 Identities=32% Similarity=0.584 Sum_probs=130.2
Q ss_pred cCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCC
Q 005913 61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS 140 (670)
Q Consensus 61 ~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~ 140 (670)
++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|+.+|.++|++|++|++
T Consensus 4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~ 82 (148)
T 2j49_A 4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS 82 (148)
T ss_dssp ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeEEEEcCCCCC
Q 005913 141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS 200 (670)
Q Consensus 141 ~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~ 200 (670)
|+|+++|+++++||+|||+|+||++++++|++||+++++. +|++|||+||+|++++|.|+
T Consensus 83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~ 145 (148)
T 2j49_A 83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA 145 (148)
T ss_dssp HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence 9999999999999999999999999999999999999988 99999999999999998775
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=358.12 Aligned_cols=285 Identities=23% Similarity=0.277 Sum_probs=236.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
+...|.+++|||||++|++|+ |+++++|+.......... .............|...|++++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEEE
Confidence 456699999999999999886 778888874210000000 00001122334456788999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEE----eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|++++|+|+|.+|++|+.|++|++||+++++++..+.+|.
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9985 688999999999999998876544 34899999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCee
Q 005913 506 SDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 506 ~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
..|.+++|+|++. +|++|+.|++|++||++++++...+. .|...+.+++|+|+ +++|++|+.||.|++||++++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 9999999999884 78999999999999999999888764 45567999999995 67899999999999999999999
Q ss_pred eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc-
Q 005913 582 VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL- 659 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~- 659 (670)
+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++ +..+..|...|++++|+|++.
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------------~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------------LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------------EEEECCCSSCEEEEEECSSSTT
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------------EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999998 589999999999999987753 224567889999999999985
Q ss_pred EEEEeeCCCC
Q 005913 660 LFAAGALSKT 669 (670)
Q Consensus 660 ~La~gs~dgs 669 (670)
+|++|+.||+
T Consensus 314 llas~s~D~~ 323 (344)
T 4gqb_B 314 LLTTVGWDHQ 323 (344)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEcCCCe
Confidence 7889999986
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-40 Score=347.16 Aligned_cols=293 Identities=26% Similarity=0.376 Sum_probs=253.3
Q ss_pred EEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
..++.+|.+.|++++|+|++ ++|++|+.|++|++|++...... .......+.+|..
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-----------------------~~~~~~~~~~h~~ 66 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----------------------FGVPVRSFKGHSH 66 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------EEEEEEEEECCSS
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------ccccceEEeCCcc
Confidence 34678899999999999965 89999999999999998631110 1234567889999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||++ +..+..+.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~ 145 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL 145 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 45778888
Q ss_pred ccCCCeeEEEEcCC------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 503 GHLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 503 ~~~~~v~~v~~~p~------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
+|...|.+++|+|+ +..+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999985 448999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
.+++++..+..+ ..|.+++|+|++.+|++++.+ .+++|++........... ........+...|.+++|+|
T Consensus 226 ~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp TTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECT
T ss_pred CCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECC
Confidence 999999888754 679999999999999988865 599999986543221110 00111223456799999999
Q ss_pred CCcEEEEeeCCCC
Q 005913 657 RNLLFAAGALSKT 669 (670)
Q Consensus 657 ~~~~La~gs~dgs 669 (670)
+|++|++|+.||+
T Consensus 297 dg~~l~sg~~Dg~ 309 (319)
T 3frx_A 297 DGQTLFAGYTDNV 309 (319)
T ss_dssp TSSEEEEEETTSC
T ss_pred CCCEEEEeecCce
Confidence 9999999999986
No 10
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=100.00 E-value=1.1e-43 Score=325.39 Aligned_cols=150 Identities=29% Similarity=0.555 Sum_probs=144.6
Q ss_pred CCchhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhH
Q 005913 45 LNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDH 124 (670)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~ 124 (670)
.+|+++++.+.++. +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||+||+++|
T Consensus 6 ~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~ 84 (156)
T 2nxp_A 6 EDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQ 84 (156)
T ss_dssp --CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGS
T ss_pred cCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHh
Confidence 47889999998886 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 005913 125 EMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS 195 (670)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 195 (670)
+.+|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|+++
T Consensus 85 ~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~ 155 (156)
T 2nxp_A 85 ECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIF 155 (156)
T ss_dssp CGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-41 Score=364.25 Aligned_cols=290 Identities=23% Similarity=0.380 Sum_probs=255.1
Q ss_pred ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
..+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+ ......+.+|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~----------------------------~~~~~~~~~h 107 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT----------------------------SQKTHAIKLH 107 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT----------------------------TEEEEEEECC
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CccceEEecC
Confidence 456678899999999999999999999999999999999865 2345667889
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEEC
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM 492 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~ 492 (670)
...|.+++|+|++++|++|+.|++|++|++.+.. ....+.+|...|.++.|+|+ +..|++|+.|++|++||+
T Consensus 108 ~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 108 CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp CTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred CCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 9999999999999999999999999999987532 34567889999999999996 557999999999999999
Q ss_pred CCCceeEEe-----cccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 493 DRIQPLRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 493 ~~~~~~~~~-----~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
.+++.+..+ .+|...|.+++|++ ++++|++|+.|++|++||++ .+.++..+.+|.+.|.+++|+|+|.+|++|
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 999988877 67899999999987 88999999999999999998 567888999999999999999999999999
Q ss_pred ECCCeEEEEeCCCCeeeEEeeCCC-------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 566 DEDGTIMMWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~~~~h~-------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+.||.|++||++++..+..+..+. ..|++++|+|+|++|++|+.||.|++||+..+......
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----------- 336 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL----------- 336 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE-----------
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE-----------
Confidence 999999999999999988776543 24899999999999999999999999999876532111
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
......|...|.+++|+|+|.+|++|+.||+
T Consensus 337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 1122568889999999999999999999986
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-39 Score=338.76 Aligned_cols=284 Identities=25% Similarity=0.493 Sum_probs=255.6
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
..+++.+|.+.|++++|+|++++||+|+.||.|+||++.. ......+.+|..
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~ 66 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKL 66 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSS
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCC
Confidence 3567888999999999999999999999999999999864 224456778999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.++.|+|++.+|++|+.|++|++||+++++.+..+.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
.|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+..++.+++|+|++++|++++.||.|++||+.++++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 999999999999999999999999999999999999887764 4567899999999999999999999999999999999
Q ss_pred eEEeeCCCcceEE--EEE-cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 582 VTPLMGHTSCVWT--LAY-SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 582 ~~~~~~h~~~V~s--l~~-s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
+..+.+|...+.. ..+ .+++.+|++|+.||.|++||+.++. .+..+..|..+|.+++|+|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------------~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---------------IVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---------------EEEEECCCSSCEEEEEECSSS
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---------------hhhhhhccCCcEEEEeecCcC
Confidence 9999888765332 233 4678999999999999999998754 345677888999999999999
Q ss_pred cEEEEee--CCCC
Q 005913 659 LLFAAGA--LSKT 669 (670)
Q Consensus 659 ~~La~gs--~dgs 669 (670)
.++++++ .|++
T Consensus 292 ~~l~s~~~~~d~~ 304 (312)
T 4ery_A 292 NIIASAALENDKT 304 (312)
T ss_dssp SEEEEEECTTTCC
T ss_pred CceEEEEccCCcc
Confidence 9999987 4554
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-39 Score=342.40 Aligned_cols=300 Identities=21% Similarity=0.334 Sum_probs=245.3
Q ss_pred eEEEeecCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913 343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~f-----s~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (670)
+..++.+|.+.|++++| ++ |+++||+|+.|++|+||++....... ........
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------~~~~~~~~ 71 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------YFGIPHKA 71 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------BSEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------ccccccch
Confidence 34567889999999999 76 99999999999999999987421100 01234567
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~ 496 (670)
+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.|++|++||+...
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~- 150 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE- 150 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred eeEEec---ccCCCeeEEEEcCCC----------CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913 497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 497 ~~~~~~---~~~~~v~~v~~~p~~----------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~ 563 (670)
...... +|...|.+++|+|++ .+|++++.||.|++|| .+++....+.+|...|.+++|+|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence 333333 688899999999987 7999999999999999 55677788899999999999999999999
Q ss_pred EEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
+|+.||.|++||+... .....+ .+...|.+++|+|++.++++| .|+.|++|++.+.......... ..........
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~ 305 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE--AEPITKAEGQ 305 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC--CCSGGGBTTB
T ss_pred EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee--cCcchhhhhh
Confidence 9999999999999544 344433 355679999999999887655 5888999999876532200000 0000111223
Q ss_pred CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 643 PTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 643 ~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..+...|.+++|+|+|.+|++|+.||+
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCce
Confidence 367778999999999999999999985
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-40 Score=354.52 Aligned_cols=281 Identities=20% Similarity=0.258 Sum_probs=235.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
..|...|+|++|||||++||+|+. |+.|++|+...... .........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~------------------------~~~~~~~~~~~~ 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP------------------------NESLCTAGVQTE 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---------------------------CGGGCSEEEECS
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc------------------------ceeEecccCCCC
Confidence 357788999999999999999997 67788888654211 112334456799
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
..|++++|+|++. +++++.||+|+|||+.+++.. ....+|...|++++|+|++.+|++|+.|++|++||+++++.
T Consensus 95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999875 556788999999999887653 33457999999999999999999999999999999999999
Q ss_pred eEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 005913 498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM 573 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~sg~~dg~I~i 573 (670)
+..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+. .|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 999999999999999999875 78999999999999999988776543 46678999999997 568999999999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++. + ....|..+|+++
T Consensus 254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~---------------~-~~~~H~~~V~~v 317 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV---------------F-RDLSHRDFVTGV 317 (357)
T ss_dssp EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE---------------E-EECCCSSCEEEE
T ss_pred EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE---------------e-EECCCCCCEEEE
Confidence 9999999999999999999999999987 5899999999999999987542 2 223688899999
Q ss_pred EEec-CCcEEEEeeCCCC
Q 005913 653 QFSR-RNLLFAAGALSKT 669 (670)
Q Consensus 653 ~fs~-~~~~La~gs~dgs 669 (670)
+|+| ++.+||+|+.||+
T Consensus 318 afsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp EECSSSTTEEEEEETTSC
T ss_pred EEeCCCCCEEEEEcCCCe
Confidence 9998 7999999999986
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-40 Score=343.97 Aligned_cols=286 Identities=22% Similarity=0.383 Sum_probs=234.1
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ec-C
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QG-H 420 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h 420 (670)
+..++.+|.+.|++++|+|+ +||+|+.||.|+||++.... ......+ .+ |
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h 57 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH 57 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence 34567889999999999988 99999999999999986411 1122233 34 9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.+.|++++|+|++++|++|+.|++|++|++.. ...+..+.+|...|.+++|+|++.+|++|+.|++|++||++
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999999853 34567788999999999999999999999999999999994
Q ss_pred C----CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcCC--CCEEEEE
Q 005913 494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG 565 (670)
Q Consensus 494 ~----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp~--g~~l~sg 565 (670)
. .+++..+.+|...|.+++|+|++++|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 3 2466788899999999999999999999999999999999876 678889999999999999998 7799999
Q ss_pred ECCCeEEEEeCCCC--------eeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913 566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL 636 (670)
Q Consensus 566 ~~dg~I~iwDl~~~--------~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 636 (670)
+.|+.|++||+..+ .+...+.+ |...|++++|++++ +|++++.||+|+||+...+...
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~------------ 284 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK------------ 284 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE------------
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE------------
Confidence 99999999998764 34555555 89999999999765 8999999999999998654210
Q ss_pred ccccccCCCCC-CeEEEEEec--CCcEEEEeeCCCC
Q 005913 637 RSLKTLPTKST-PVYSLQFSR--RNLLFAAGALSKT 669 (670)
Q Consensus 637 ~~~~~~~~~~~-~V~~l~fs~--~~~~La~gs~dgs 669 (670)
........|.. .|.+++|+| ++.+||+|+.||+
T Consensus 285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred EEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 00112345555 899999999 6899999999985
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-40 Score=342.77 Aligned_cols=263 Identities=18% Similarity=0.394 Sum_probs=245.2
Q ss_pred ccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 329 ~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
...+++|+...+.. ..+++.+|...|.+++|++++.++++|+.|+.|++||+.+
T Consensus 57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~------------------------- 111 (321)
T 3ow8_A 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN------------------------- 111 (321)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence 45678887654443 3457788999999999999999999999999999999875
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v 487 (670)
......+..|...+.+++|+|++++|++|+.||.|++|++.++.....+..|...|.+++|+|++.+|++|+.||.|
T Consensus 112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 23455667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+|.+|++|+.
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
||.|++||+.+++++..+.+|...|++++|+|++.+|++++.||+|+|||+.
T Consensus 269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999963
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-39 Score=350.27 Aligned_cols=298 Identities=26% Similarity=0.437 Sum_probs=246.9
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
....+|.+.|+|++|||||++||+|+ ++.++||++................ .............+...|
T Consensus 58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v 126 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI 126 (393)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence 34457899999999999999999985 7899999987643322111100000 000000111112344569
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~ 205 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I 205 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877776 5
Q ss_pred CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 505 ~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
...+.+++|+| ++++|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 57899999999 8999999999999999999999988776 578999999999999999999999999999999
Q ss_pred CCC------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 577 ASG------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 577 ~~~------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
.+. .+...+.+|...|.+++|+|++.+|++|+.||+|++||+.++.. +..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~---------------~~~l~~ 350 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------------LLMLQG 350 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------------EEEEEC
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------------EEEECC
Confidence 753 45567789999999999999999999999999999999987643 445678
Q ss_pred CCCCeEEEEEec------CCcEEEEeeCCCC
Q 005913 645 KSTPVYSLQFSR------RNLLFAAGALSKT 669 (670)
Q Consensus 645 ~~~~V~~l~fs~------~~~~La~gs~dgs 669 (670)
|...|.+++|++ ++.+||+|+.||+
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 889999999986 6899999999985
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.8e-40 Score=354.44 Aligned_cols=262 Identities=28% Similarity=0.526 Sum_probs=242.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+...... ..++.+|.+.|++++|+|++++||+|+.||+|+|||+.+
T Consensus 129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------------- 181 (410)
T 1vyh_C 129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------------- 181 (410)
T ss_dssp SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence 34678887654432 346778999999999999999999999999999999864
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
......+.+|...|++++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|+
T Consensus 182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 234556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCC--------------------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~--------------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (670)
+||+.++.....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67899999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
.|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|+||++.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999863
No 19
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=100.00 E-value=2.5e-42 Score=308.49 Aligned_cols=134 Identities=31% Similarity=0.694 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChh
Q 005913 63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS 142 (670)
Q Consensus 63 ~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (670)
-|+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|++||+||+++|+.+ .++|++|++|++|+
T Consensus 4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e 82 (138)
T 2j4b_A 4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ 82 (138)
T ss_dssp ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 005913 143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG 197 (670)
Q Consensus 143 ~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~ 197 (670)
|+++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus 83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g 137 (138)
T 2j4b_A 83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG 137 (138)
T ss_dssp HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-39 Score=366.25 Aligned_cols=304 Identities=21% Similarity=0.303 Sum_probs=247.2
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.. +..+..++.+|.+.|++++|+|||++||+|+.|++|+||++..........
T Consensus 169 D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~------------------ 229 (611)
T 1nr0_A 169 DNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE------------------ 229 (611)
T ss_dssp TSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB------------------
T ss_pred CCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec------------------
Confidence 3567888743 345566788899999999999999999999999999999986532211000
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-------------------------------
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV------------------------------- 457 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~------------------------------- 457 (670)
.......+|.+.|++++|+|++++|++|+.|++|++||+.+++.+.
T Consensus 230 ---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 230 ---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred ---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 0000122799999999999999999999999999999998765443
Q ss_pred ------------EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-c----------------------
Q 005913 458 ------------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A---------------------- 502 (670)
Q Consensus 458 ------------~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~---------------------- 502 (670)
.+.+|...|++++|+|+|.+|++++.|++|++||+.++.....+ .
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence 34578999999999999999999999999999998765433221 0
Q ss_pred -----------------------------------------------------------ccCCCeeEEEEcCCCCEEEEE
Q 005913 503 -----------------------------------------------------------GHLSDVDCVRWHINCNYIATG 523 (670)
Q Consensus 503 -----------------------------------------------------------~~~~~v~~v~~~p~~~~l~tg 523 (670)
.|...+.+++|+|+|++|++|
T Consensus 387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg 466 (611)
T 1nr0_A 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466 (611)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence 122456789999999999999
Q ss_pred EcCCcEEEEECCCCcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEE--eeCCCcceEEEEEc
Q 005913 524 SSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTP--LMGHTSCVWTLAYS 598 (670)
Q Consensus 524 s~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~--~~~h~~~V~sl~~s 598 (670)
+.|++|++||+.++.. +.. .+|...|++++|+|+|++|++++.|+.|++||+.+ ++.+.. +.+|...|++++|+
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred CCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 9999999999987654 333 67999999999999999999999999999999987 665543 34599999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEecCCcEEEEeeCCCC
Q 005913 599 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 599 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
|+|++|++|+.|++|++|++..+... .+..+..| ...|.+++|+|++. |++|+.|++
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~~~-------------~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~ 603 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPSDH-------------PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN 603 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSC-------------CEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred CCCCEEEEEECCCcEEEEECCCcccc-------------cchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence 99999999999999999999875421 11345567 78999999999999 999999986
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-38 Score=359.38 Aligned_cols=289 Identities=34% Similarity=0.559 Sum_probs=260.7
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
..+++|+.. .....++.+|...|++++|+|++++|++|+.||.|++|++..
T Consensus 284 ~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------------------------- 334 (577)
T 2ymu_A 284 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------- 334 (577)
T ss_dssp SCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred CEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence 456777643 334456778889999999999999999999999999999763
Q ss_pred CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l 489 (670)
.....+.+|...|++++|+|++++|++|+.||+|++|+.. ++.+..+.+|..+|.+++|+|++.+|++++.|+.|++
T Consensus 335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 2345567899999999999999999999999999999964 6778889999999999999999999999999999999
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.|+
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 996 56788889999999999999999999999999999999996 6788889999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 649 (670)
.|++||. +++++..+.+|...|++++|+|+|++|++++.||.|++||... ..+..+..|..+|
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~----------------~~~~~~~~h~~~v 552 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSV 552 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------------CEEEEEECCSSCE
T ss_pred EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC----------------CEEEEEcCCCCCE
Confidence 9999995 7888999999999999999999999999999999999999643 2355677899999
Q ss_pred EEEEEecCCcEEEEeeCCCC
Q 005913 650 YSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 650 ~~l~fs~~~~~La~gs~dgs 669 (670)
.+++|+|+|++|++|+.|++
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp EEEEECTTSSCEEEEETTSC
T ss_pred EEEEEcCCCCEEEEEeCCCE
Confidence 99999999999999999986
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=337.41 Aligned_cols=250 Identities=21% Similarity=0.250 Sum_probs=217.2
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
...+..+|++++|+||+ .|++|+.||.|+|||+.+.... ......+.+|.+.|++
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST 132 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence 34566789999999985 6789999999999998753211 1122345689999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec--c
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G 503 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~~--~ 503 (670)
++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+. .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 9999999999999999999999999999999999999999999999987 478999999999999999999888775 4
Q ss_pred cCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCee
Q 005913 504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 504 ~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
|...+.+++|+|+ +++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||.|++||+.++++
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 5567899999985 5788999999999999999999999999999999999999998 5899999999999999999876
Q ss_pred eEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc
Q 005913 582 VTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+ .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus 293 ~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 293 F-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred E-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 5 5789999999999999886 67899999999999997743
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-38 Score=362.81 Aligned_cols=295 Identities=21% Similarity=0.300 Sum_probs=252.8
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
.+.+++|+...+.. ..++.+|...|++++|||||++||+|+.||.|+|||+....
T Consensus 38 ~~~v~l~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~------------------------ 92 (611)
T 1nr0_A 38 GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------------------------ 92 (611)
T ss_dssp TTEEEEEETTCSSC-CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------------------------
T ss_pred CCEEEEecCCCccc-CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc------------------------
Confidence 34677887654332 34577899999999999999999999999999999985311
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEEC
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSH 483 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~ 483 (670)
......+.+|.++|.+++|+|+++.|++++.+ ++|++||. +.....+.+|...|++++|+|++. .|++|+.
T Consensus 93 --~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~ 168 (611)
T 1nr0_A 93 --HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168 (611)
T ss_dssp --CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred --ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeC
Confidence 12334677899999999999999999998865 47888874 566777889999999999999986 5999999
Q ss_pred CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-------cCCCCeEEEEEc
Q 005913 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMS 556 (670)
Q Consensus 484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~s 556 (670)
|++|++||...++....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+. +|.+.|.+++|+
T Consensus 169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 9999999999988899999999999999999999999999999999999999999998884 799999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeeeEE-------------------------------------------eeCCCcceE
Q 005913 557 PDGRYMASGDEDGTIMMWDLASGRCVTP-------------------------------------------LMGHTSCVW 593 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~-------------------------------------------~~~h~~~V~ 593 (670)
|+|++|++++.|+.|++||+.+++++.. +.+|...|+
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 9999999999999999999998765433 347899999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc-CCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+++|+|+|++|++++.||+|++||+.++... ..+ ..|...|.+++|++++. +++++.|+
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~-l~s~s~d~ 388 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISN---------------RVFPDVHATMITGIKTTSKGD-LFTVSWDD 388 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------ECSSCSCSSCEEEEEECTTSC-EEEEETTT
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcee---------------eecccCCcceEEEEEECCCCc-EEEEEcCC
Confidence 9999999999999999999999999876432 112 45778899999998875 56666664
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-38 Score=333.29 Aligned_cols=263 Identities=24% Similarity=0.384 Sum_probs=237.2
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....
T Consensus 76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------ 130 (340)
T 1got_B 76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------ 130 (340)
T ss_dssp TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence 3578888755443 345667788899999999999999999999999999987421
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
........+.+|.+.|.++.|++++. +++++.|++|++||+.++..+..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 11234566789999999999998765 88999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~ 566 (670)
+||++++.++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+ ...|++++|+|+|++|++|+
T Consensus 210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999888777532 34799999999999999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
.||.|++||+.++..+..+.+|.+.|++++|+|+|.+|++|+.||+|+|||
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999999999999999999999997
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=327.82 Aligned_cols=285 Identities=19% Similarity=0.338 Sum_probs=257.5
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
.....+++.+|.+.|+|++|+|++++||+|+.||.|+||++.+ ......+.+
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~ 72 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDG 72 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECC
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhh
Confidence 3455678899999999999999999999999999999999875 235566788
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDR 494 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~ 494 (670)
|.+.|++++|+|++++|++++.||+|++||+.+++.+..+. +..+|.+++|+|++.++++++.+ +.|++||+..
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999988888 88899999999999999999999 9999999875
Q ss_pred Cc-----------eeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCC
Q 005913 495 IQ-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 495 ~~-----------~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
.. +...+..|.. .+.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 43 4455556666 899999999999999999999999999998 788899999999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCccccc
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTTSTKVLK 626 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------------~I~iwd~~~~~~~~~ 626 (670)
+|++++.||.|++||+.+++.+..+. +...+.+++|+|++.++++++.++ .+++||+.++..
T Consensus 232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--- 307 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--- 307 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE---
T ss_pred EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc---
Confidence 99999999999999999999988887 778899999999999999999998 799999877643
Q ss_pred cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..+..|..+|.+++|+|++.+|++|+.||+
T Consensus 308 ------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 308 ------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp ------------EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ------------hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 4456678899999999999999999999984
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.5e-37 Score=321.23 Aligned_cols=294 Identities=24% Similarity=0.377 Sum_probs=250.8
Q ss_pred EEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+..... ........+.+|...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSHF 88 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSSC
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCCC
Confidence 478899999999999997 68999999999999999875211 112345678899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEec
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA 502 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~-~~~~ 502 (670)
|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence 999999999999999999999999999999888888889999999999999999999999999999999766544 3345
Q ss_pred ccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 503 GHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
+|...+.+++|++++ .++++++.|+.|++||+++++.+..+.+|.++|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 788999999999765 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~ 660 (670)
++..+..+ ..|.++.|+|++.++ +++.|+.|++||+........... .........+...|.+++|+|+|.+
T Consensus 249 ~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 249 HLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQ------EVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp EEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECC------C-------CCCCCEEEEEECTTSSE
T ss_pred eeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccc------cceeeeccCCCCCEEEEEECCCCCE
Confidence 99888755 579999999987655 566799999999987654332211 1112344567889999999999999
Q ss_pred EEEeeCCCC
Q 005913 661 FAAGALSKT 669 (670)
Q Consensus 661 La~gs~dgs 669 (670)
|++|+.||+
T Consensus 321 l~sgs~Dg~ 329 (340)
T 4aow_A 321 LFAGYTDNL 329 (340)
T ss_dssp EEEEETTSC
T ss_pred EEEEeCCCE
Confidence 999999985
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.6e-37 Score=319.57 Aligned_cols=283 Identities=20% Similarity=0.337 Sum_probs=250.5
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecC
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGH 420 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h 420 (670)
......+|.+.|++++|+|++++|++|+ ||.|++|++...... .....+ .+|
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-------------------------~~~~~~~~~~~ 96 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-------------------------SPVSQLDCLNR 96 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-------------------------SCSEEEECSCT
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-------------------------eeeecccccCC
Confidence 3445568899999999999999999998 999999998752211 112222 378
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
...|.+++|+|++++|++++.||.|++||+.++. ....+..|...|.+++|+|++.++++++.||.|++||+++++.+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 9999999999999999999999999999999877 56678889999999999999999999999999999999999999
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.+|.|++||+.+
T Consensus 177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 9999999999999999999999999999999999999999888764 778899999999999999999999999999998
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
+... .+..|...|.+++|+|++++|++++.||.|++||+.++... ....+..+|.+++|+|++
T Consensus 256 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~----------------~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 256 PDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI----------------FQSKESSSVLSCDISVDD 318 (337)
T ss_dssp SCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----------------EEEECSSCEEEEEECTTS
T ss_pred CCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE----------------EEecCCCcEEEEEECCCC
Confidence 8754 66789999999999999999999999999999999886532 112356789999999999
Q ss_pred cEEEEeeCCCC
Q 005913 659 LLFAAGALSKT 669 (670)
Q Consensus 659 ~~La~gs~dgs 669 (670)
.+|++|+.||+
T Consensus 319 ~~l~~~~~dg~ 329 (337)
T 1gxr_A 319 KYIVTGSGDKK 329 (337)
T ss_dssp CEEEEEETTSC
T ss_pred CEEEEecCCCe
Confidence 99999999985
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-37 Score=326.21 Aligned_cols=266 Identities=27% Similarity=0.365 Sum_probs=237.8
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.... .+..++..+...|.+++|+|+|.+||+|+.|+.|++|++......
T Consensus 85 Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------- 141 (354)
T 2pbi_B 85 DGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------- 141 (354)
T ss_dssp TSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred CCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence 357888875443 334556677888999999999999999999999999998642110
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~ 486 (670)
........+.+|.+.|.+++|+|++..|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 11234456778999999999999999999999999999999999999999999999999999988 5789999999999
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC--CCeEEEEEcCCCCEEEE
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMAS 564 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~I~~l~~sp~g~~l~s 564 (670)
|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..+. ..+.+++|+|+|.+|++
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999998887776443 47899999999999999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
|+.||.|++||+.++..+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999999999999996
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-37 Score=333.76 Aligned_cols=301 Identities=17% Similarity=0.213 Sum_probs=252.2
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
..++.+|.+.|+|++|+| ++|++|+.||.|+||++...... ........+.+|..+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG 64 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence 345678999999999998 89999999999999998752210 012345667799999
Q ss_pred EEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----eEEeeCC-----CccEeEEEEe----cCCCE-EEEE
Q 005913 424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS 481 (670)
Q Consensus 424 V~~l~~sp~----~---~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----p~g~~-l~s~ 481 (670)
|++++|+|+ + ++|++++.||.|++|++.++.. ...+..| ...|++++|+ |++.+ |+++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 999999999 9 9999999999999999998887 8888888 5899999999 99999 9999
Q ss_pred ECCCcEEEEECCC------CceeE-----Ee-------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913 482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 482 s~dg~v~lwd~~~------~~~~~-----~~-------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (670)
+.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ ++++|+.||.|++||+++++.+..+
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 9999999999988 66665 66 4488999999999999 9999999999999999999999999
Q ss_pred ec---C---CCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCCeeeEEeeC-------------CCcceEEEEEcCCC
Q 005913 544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYSCEG 601 (670)
Q Consensus 544 ~~---h---~~~I~~l~~sp~g~~l~sg~~d---g~I~iwDl~~~~~~~~~~~-------------h~~~V~sl~~s~~g 601 (670)
.. | ...|.+++|+|++.+|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 98 8 9999999999999999999999 9999999999999999988 99999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCcccccccccc---CC---cccccccccCCCCCCeEEEEEecCC----------cEEEEee
Q 005913 602 SLLASGSADCTVKLWDVTTSTKVLKTEEKS---GT---NRLRSLKTLPTKSTPVYSLQFSRRN----------LLFAAGA 665 (670)
Q Consensus 602 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~V~~l~fs~~~----------~~La~gs 665 (670)
++|++++.||.|++||+.++.......... .. ...........|..+|.+++|+|++ .+|++|+
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999998876543322000 00 0000000112238899999999998 7999999
Q ss_pred CCCC
Q 005913 666 LSKT 669 (670)
Q Consensus 666 ~dgs 669 (670)
.||+
T Consensus 384 ~dg~ 387 (397)
T 1sq9_A 384 LDRS 387 (397)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 9984
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.5e-37 Score=344.60 Aligned_cols=289 Identities=34% Similarity=0.572 Sum_probs=259.7
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
..+++|+... ....++.+|...|++++|+|++++|++|+.|+.|++|+...
T Consensus 243 ~~i~~w~~~~--~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------------------------- 293 (577)
T 2ymu_A 243 KTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------------------------- 293 (577)
T ss_dssp SCEEEECTTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred CEEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---------------------------
Confidence 4677887543 34556778889999999999999999999999999999653
Q ss_pred CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l 489 (670)
.....+.+|...|++++|+|++..|++++.|++|++||+. +..+..+.+|..+|++++|+|++.++++|+.|+.+++
T Consensus 294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 2455678899999999999999999999999999999987 4566778899999999999999999999999999999
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg 569 (670)
|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence 996 56788888999999999999999999999999999999995 6788889999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 649 (670)
.|++||. +++.+..+.+|...|++++|+|++++|++++.|++|++||... ..+..+..|..+|
T Consensus 449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v 511 (577)
T 2ymu_A 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSV 511 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------------CEEEEEECCSSCE
T ss_pred EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCE
Confidence 9999996 6778888999999999999999999999999999999999643 2345667888999
Q ss_pred EEEEEecCCcEEEEeeCCCC
Q 005913 650 YSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 650 ~~l~fs~~~~~La~gs~dgs 669 (670)
.+++|+|+|++||+|+.||+
T Consensus 512 ~~l~~s~dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDKT 531 (577)
T ss_dssp EEEEECTTSSCEEEEETTSE
T ss_pred EEEEEcCCCCEEEEEECcCE
Confidence 99999999999999999984
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-37 Score=319.07 Aligned_cols=249 Identities=23% Similarity=0.391 Sum_probs=217.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|.+.|++++|+|+|++||+|+.|+.|+||++... .......+.+|.++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~ 57 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence 46678899999999999999999999999999998631 1234567889999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 005913 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (670)
Q Consensus 426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~--~ 497 (670)
+++|+++ +++|++|+.||+|++||+.++. .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||++... .
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 9999864 8999999999999999998764 56778889999999999997 8999999999999999998753 2
Q ss_pred eEEecccCCCeeEEEEcCC-------------CCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCC-
Q 005913 498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG- 559 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~-------------~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g- 559 (670)
...+.+|...|.+++|+|+ +++|++|+.|++|++||++++. ....+.+|...|.+++|+|++
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence 4667889999999999997 5799999999999999998876 667788999999999999985
Q ss_pred --CEEEEEECCCeEEEEeCCCCe---eeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 560 --~~l~sg~~dg~I~iwDl~~~~---~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+|++|+.||.|++||+.++. ....+ ..|...|++++|+|+|++|++++.||+|+||+...
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 899999999999999998643 12223 46788999999999999999999999999999764
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=341.91 Aligned_cols=315 Identities=17% Similarity=0.297 Sum_probs=260.5
Q ss_pred cceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 330 NRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 330 ~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..+++|+...... .......|...|++++|+|++++||+|+.||.|++|++....
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------ 100 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------ 100 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------
Confidence 3567776544321 122234578899999999999999999999999999987411
Q ss_pred CCccceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeE---EeeCCCccEeEEEEecC-CCE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHY 477 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~l~~sp~-g~~ 477 (670)
........+.+|.+.|++++|+|+ +.+|++++.||+|++||+.++. ... ....|...|.+++|+|+ +.+
T Consensus 101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (416)
T 2pm9_A 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV 180 (416)
T ss_dssp SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE
Confidence 012255667889999999999998 8999999999999999999876 332 24678999999999998 789
Q ss_pred EEEEECCCcEEEEECCCCceeEEeccc------CCCeeEEEEcCCC-CEEEEEEcCC---cEEEEECCCC-cEEEEEe-c
Q 005913 478 FASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-G 545 (670)
Q Consensus 478 l~s~s~dg~v~lwd~~~~~~~~~~~~~------~~~v~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~~-~~~~~~~-~ 545 (670)
|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++ .++..+. +
T Consensus 181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 999999999999999999999888876 7889999999997 6899999998 9999999986 6777777 8
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCcc
Q 005913 546 HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 546 h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
|...|.+++|+| ++.+|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.....
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 999999999999 99999999999999999999999999999999999999999998 8999999999999999988764
Q ss_pred cccccc--------------------c-cCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 624 VLKTEE--------------------K-SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 624 ~~~~~~--------------------~-~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
...... . ........ .....+..++.+++|+|+|++||+|+.||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~ 406 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKG 406 (416)
T ss_dssp SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSC
T ss_pred CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCe
Confidence 332211 0 00000011 222336778999999999999999999885
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.7e-37 Score=354.37 Aligned_cols=300 Identities=26% Similarity=0.407 Sum_probs=248.4
Q ss_pred EEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
-.+.+|.+.|+|++|+|+ +++|++|+.||+|+||++..... ........+.+|...
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~ 432 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF 432 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence 356789999999999987 57999999999999999874211 012345678899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-- 501 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-- 501 (670)
|.+++|+|++++|++|+.||+|++||+.++.....+.+|...|.+++|+|++.+|++|+.|++|++||+.........
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765443332
Q ss_pred -cccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913 502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (670)
Q Consensus 502 -~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~ 578 (670)
.+|...|.|++|+|++ ..+++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3688899999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc--c--ccccccCCCCCCeEEEEE
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR--L--RSLKTLPTKSTPVYSLQF 654 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~V~~l~f 654 (670)
++++..+.. ...|.+++|+|++.+|++++ |+.|+|||+.++.............. . ........+...+.+++|
T Consensus 593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 998887764 46799999999998888776 56699999998765433221100000 0 000011122234789999
Q ss_pred ecCCcEEEEeeCCCC
Q 005913 655 SRRNLLFAAGALSKT 669 (670)
Q Consensus 655 s~~~~~La~gs~dgs 669 (670)
+|+|.+|++|+.||+
T Consensus 671 spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 671 SADGSTLFSGYTDGV 685 (694)
T ss_dssp CTTSSEEEEEETTSE
T ss_pred cCCCCEEEEEcCCCe
Confidence 999999999999985
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=332.10 Aligned_cols=289 Identities=16% Similarity=0.293 Sum_probs=252.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
|.+.|+|++|+|++++||+|+.||.|++|+.. ......+.+|...|++++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----------------------------~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----------------------------GALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----------------------------SCEEEEECCCCSCEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------------------------CCeeeeccCCCccEEEEEE
Confidence 56689999999999999999999999999943 2345567789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc---------------EeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
+|++++|++++.||.|++||+.++..+..+..+... +.++.|+|++ .+++++.||.|++||+.+
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence 999999999999999999999999999888888777 9999999985 588999999999999999
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
++++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc-----cCCcccccccccCCCCC--
Q 005913 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKST-- 647 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 647 (670)
|+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+.......... ........+..+..+..
T Consensus 316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 99999999999999999999999999999999999999999999765421111000 00111224667777766
Q ss_pred CeEEEEEecCCcEEEEeeCCCC
Q 005913 648 PVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 648 ~V~~l~fs~~~~~La~gs~dgs 669 (670)
+|.+++|+|++.+|++|+.||+
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSC
T ss_pred ceEEEEccCCCceEEEEecCce
Confidence 9999999999999999999985
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.8e-37 Score=318.84 Aligned_cols=242 Identities=22% Similarity=0.362 Sum_probs=223.6
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
....+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT 570 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~ 570 (670)
.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.||.
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999987 45677889999999999999 6789999999999
Q ss_pred EEEEeCCCCeeeEEee-CCCcceEEEEEcC--CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913 571 IMMWDLASGRCVTPLM-GHTSCVWTLAYSC--EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST 647 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~--~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (670)
|++||++++.....+. +|...|..+.|+| ++.+|++|+.||+|++||+.++. .+..+..|..
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---------------~~~~~~~h~~ 229 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---------------CVATLEGHMS 229 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE---------------EEEEEECCSS
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc---------------cceeeCCCCC
Confidence 9999999887766665 5668899999987 77899999999999999998754 3556778899
Q ss_pred CeEEEEEecCCcEEEEeeCCCC
Q 005913 648 PVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 648 ~V~~l~fs~~~~~La~gs~dgs 669 (670)
.|.+++|+|++.+|++|+.||+
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSC
T ss_pred CEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999999986
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.2e-37 Score=325.02 Aligned_cols=294 Identities=18% Similarity=0.230 Sum_probs=246.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.|.++|+|++|+|++++||+|+.||.|+||++.... ......+.+|...|++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~ 59 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------WVQVHELKEHNGQVTGVD 59 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------EEEEEEEECCSSCEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------EEeeeeecCCCCcccEEE
Confidence 377899999999999999999999999999986411 125566789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEec
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMA 502 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~----~~~~~ 502 (670)
|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++.+|++++.|+.|++||++.... .....
T Consensus 60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 999999999999999999999988765443 467899999999999999999999999999999988763 23336
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC------------------CCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
+|...|.+++|+|++++|++|+.||.|++||+ ..++++..+.+|...|.+++|+|++.+|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 78899999999999999999999999999995 467889999999999999999999999999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC--Ccccc--ccccccC--------
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT--STKVL--KTEEKSG-------- 632 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~--~~~~~--~~~~~~~-------- 632 (670)
++.||.|++||+.+++++..+..|...|.+++|+|++.+|++| .||.|++|++.. +.-.. .......
T Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 220 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 9999999999999999999999999999999999999988887 999999999987 32000 0000000
Q ss_pred -------Ccccccc------ccc-CCCCCCeEEEEEe-cCC---cEEEEeeCCCC
Q 005913 633 -------TNRLRSL------KTL-PTKSTPVYSLQFS-RRN---LLFAAGALSKT 669 (670)
Q Consensus 633 -------~~~~~~~------~~~-~~~~~~V~~l~fs-~~~---~~La~gs~dgs 669 (670)
....... ..+ ..|..+|.+++|+ ++| .+|++|+.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence 0000000 222 4788999999976 566 99999999985
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=325.28 Aligned_cols=303 Identities=12% Similarity=0.206 Sum_probs=251.0
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccce
Q 005913 339 LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (670)
Q Consensus 339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (670)
.|......+.+|.+.|++++|+|++..+ ++|+. ||.|+||++.+.. ...
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~ 58 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL 58 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence 4556666778899999999999999655 56665 9999999987521 122
Q ss_pred eeeecCccCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEEEE------ecCCCEEEEEECC
Q 005913 415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD 484 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~---~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~------sp~g~~l~s~s~d 484 (670)
....+|..+|++++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.++.| +|++.+|++++.|
T Consensus 59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 233478999999999998 6999999999999999999888 88899999999999965 6789999999999
Q ss_pred CcEEEEECCCCc-eeEEecccCC----CeeEEE----EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913 485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (670)
Q Consensus 485 g~v~lwd~~~~~-~~~~~~~~~~----~v~~v~----~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 555 (670)
|.|++||++++. ++..+..|.. .+.+++ |+|+++++++|+.||.|++||+++++.... ..|...|.+++|
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~ 217 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF 217 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence 999999999887 7788876655 788988 788999999999999999999999987554 578899999999
Q ss_pred cC---CCCEEEEEECCCeEEEEeCCCCeeeEEee-----CCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCccccc
Q 005913 556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 556 sp---~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-----~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~ 626 (670)
+| ++.+|++|+.||.|++||+++++.+..+. +|...|++++|+|++. +|++|+.||.|++||+..+.....
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 99 99999999999999999999887665554 8999999999999998 899999999999999987654322
Q ss_pred cccc----cCCcccccccccCCCCCCeEEEEEecCCcEEE-EeeCCCC
Q 005913 627 TEEK----SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSKT 669 (670)
Q Consensus 627 ~~~~----~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La-~gs~dgs 669 (670)
.... ........+..+..|..+|.+++|+|++.+|+ +|+.||+
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 1110 00112245667788999999999999999998 7998874
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-37 Score=327.67 Aligned_cols=251 Identities=19% Similarity=0.243 Sum_probs=215.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
...+|..+|++++|+|++.++ +|+.||.|+|||+.+..... .......+|.+.|+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK 143 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence 456788899999999998655 56789999999987522111 11233458999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEec--
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA-- 502 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~-- 502 (670)
+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||++++++...+.
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 999999999999999999999999999999999999999999999999874 78999999999999999988776554
Q ss_pred ccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCe
Q 005913 503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 503 ~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~ 580 (670)
.|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 56678999999997 5689999999999999999999999999999999999999987 579999999999999999998
Q ss_pred eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913 581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
++..+ +|.+.|++++|+| ++.+|++|+.||+|++|++.+..
T Consensus 304 ~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 304 VFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 77654 8999999999998 79999999999999999997754
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=321.86 Aligned_cols=269 Identities=21% Similarity=0.293 Sum_probs=225.4
Q ss_pred ccceecCCCCCCcee-EEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 329 RNRVHLSSAALPSVS-FYT-FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~-~~t-~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+++|+....... ... ..+|...|++++|+|++++||+|+.|+.|+||++...
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----------------------- 93 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----------------------- 93 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence 356788876544322 222 3568889999999999999999999999999997641
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 483 (670)
.......+.+|.+.|++++|+|++++|++|+.|++|++||+.... ++..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 123456788999999999999999999999999999999998764 35667889999999999999999999999
Q ss_pred CCcEEEEECCCCc--eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---------------cEEEEEec-
Q 005913 484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG- 545 (670)
Q Consensus 484 dg~v~lwd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---------------~~~~~~~~- 545 (670)
|++|++||.+.+. +...+.+|...|.+++|+|++++|++|+.|++|++||.... +++..+.+
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 9999999998775 44678899999999999999999999999999999996321 33445555
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee---------eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEE
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKL 615 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~---------~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~i 615 (670)
|...|.+++|+|++..|++++.|+.|++|+...+.. .....+|...|++++|+|++ .+|++|+.||+|++
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 888999999999999999999999999999875421 12235899999999999987 59999999999999
Q ss_pred EeCCCCcc
Q 005913 616 WDVTTSTK 623 (670)
Q Consensus 616 wd~~~~~~ 623 (670)
|++.....
T Consensus 331 W~~~~~~~ 338 (345)
T 3fm0_A 331 WKYQRPEG 338 (345)
T ss_dssp EEECC---
T ss_pred EEecCCCC
Confidence 99988654
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-36 Score=325.06 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=233.7
Q ss_pred EEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
..++.+|.+.|+|++|+|++ ++||+|+.||.|+||++.... ........+|.+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~ 119 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD 119 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence 34677888999999999999 999999999999999987521 112222347999
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCC---CccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
.|.+++|+| ++.+|++++.|++|++||+.+ ..+..+..+ ...|.+++|+|++.+|++|+.|+.|++||+ +++++
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 999999999 679999999999999999995 555555544 488999999999999999999999999999 57788
Q ss_pred EEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC----CcEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 005913 499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM 572 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~ 572 (670)
..+.+|...|.+++|+|+++ ++++|+.|+.|++||+++ +.++..+ +|...|.+++|+| +|.+|++++.||.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 89999999999999999999 999999999999999998 6677766 7999999999999 999999999999999
Q ss_pred EEeCCCCeeeEEeeCCC-----------------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913 573 MWDLASGRCVTPLMGHT-----------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 635 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~-----------------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 635 (670)
+||++++..+..+.+|. +.+..++|+|++++ +|+.||.|+|||+.++...
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~----------- 343 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV----------- 343 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-----------
T ss_pred EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee-----------
Confidence 99999988777766543 23344556666655 6778999999999886542
Q ss_pred cccccccCC--CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 636 LRSLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 636 ~~~~~~~~~--~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..+.. +...+..++|+|++.+|++|+ ||+
T Consensus 344 ----~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 344 ----HQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp ----EEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ----eeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 23332 456788889999999999997 653
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.4e-37 Score=324.78 Aligned_cols=285 Identities=16% Similarity=0.282 Sum_probs=243.6
Q ss_pred eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee--eecC
Q 005913 347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH 420 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h 420 (670)
..+|.+.|+|++|+|+ ...+++++.++.|+||++...... ..... ...|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------------------------~~~~~~~~~~~ 68 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------------------------RLLQSYVDADA 68 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------------------------EEEEEEECSCT
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------------------------EeeeeccccCC
Confidence 3468899999999984 556667777889999998752211 11111 1237
Q ss_pred ccCEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC
Q 005913 421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 421 ~~~V~~l~~sp~----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~ 495 (670)
...|++++|+|+ +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||++++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 788999999999 67999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeEEe---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe----------------------------
Q 005913 496 QPLRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------------------------- 544 (670)
Q Consensus 496 ~~~~~~---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---------------------------- 544 (670)
+.+..+ .+|...|.+++|+|++++|++++.||.|++||+++++....+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 999888 6899999999999999999999999999999999876543333
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--------------eEEeeCCCcceEEEEEcCC--CCEEEEEE
Q 005913 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYSCE--GSLLASGS 608 (670)
Q Consensus 545 ~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--------------~~~~~~h~~~V~sl~~s~~--g~~l~sgs 608 (670)
+|...|.+++|+ +.+|++++.||.|++||+.++.. +..+..|...|++++|+|+ +++|++|+
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 389999999999 77999999999999999987744 7788899999999999999 99999999
Q ss_pred CCCcEEEEeCCCCccccccccccCCcccccccccCCC--CCCeEEEEEecCCcEEEEeeCCCC
Q 005913 609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 609 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.||.|++||+..+.... ..+..+..+ ..+|.+++|+|++.+|++|+.||+
T Consensus 307 ~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHK-----------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp TTSCEEEEECCSSSGGG-----------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred cCCcEEEEECCCCCCcc-----------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 99999999998865321 122344455 789999999999999999999984
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-37 Score=329.55 Aligned_cols=272 Identities=24% Similarity=0.418 Sum_probs=238.0
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.... .+..++..|...|.+++|+|++++||+|+.|+.|+||++..... ..
T Consensus 87 D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~---------------------~~ 144 (380)
T 3iz6_a 87 DGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD---------------------RD 144 (380)
T ss_dssp TSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS---------------------CC
T ss_pred CCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc---------------------cc
Confidence 457889986544 34567788889999999999999999999999999999874211 01
Q ss_pred CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe-----eCCCccEeEEEEec-CCCEEEEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFNP-QGHYFASS 481 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~sp-~g~~l~s~ 481 (670)
........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+ .+|...|.++.|++ ++.+|++|
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 1123445678999999999999975 57999999999999999999988877 67999999999987 88999999
Q ss_pred ECCCcEEEEECC-CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-------CeEEE
Q 005913 482 SHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSL 553 (670)
Q Consensus 482 s~dg~v~lwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~I~~l 553 (670)
+.|++|++||++ ...++..+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+..+.. .|+++
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 999999999998 5578889999999999999999999999999999999999999999988865432 48999
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+|++|+.||+|+||++....
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999999888776 6799999999999999999999999999999987643
No 43
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.8e-37 Score=331.27 Aligned_cols=299 Identities=25% Similarity=0.426 Sum_probs=260.5
Q ss_pred ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005913 294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSD 372 (670)
Q Consensus 294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~d 372 (670)
.+..+.++.++|.+.+++|+..++|+..+.+...+.+.+++|+...... ..+.+.+|...|+|++|+|||++||+|+.|
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D 168 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence 3455788999999999999999999877655567788999998876543 344566777889999999999999999999
Q ss_pred CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913 373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (670)
Q Consensus 373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~ 452 (670)
|.|+||++.+ ......+.+|...|.+++|+ +..|++|+.|+.+++||...
T Consensus 169 g~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 169 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp SCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred CeEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc
Confidence 9999999875 34566788999999998886 68999999999999999886
Q ss_pred Cc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecccCCCeeEEEEcCCCC-EEEE--EE
Q 005913 453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCN-YIAT--GS 524 (670)
Q Consensus 453 ~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~-~l~t--gs 524 (670)
.. .+..+.+|...+..+.|+|++.++++++.|+.+++|+...++ .+.....|...|.+++|+|.+. .+++ |+
T Consensus 219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 54 457788999999999999999999999999999999998764 4567788999999999999764 5554 34
Q ss_pred cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 525 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
.|++|++||+.+++++..+..| ..+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+|.+.|++++|+|+|+
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 7999999999999999888755 5689999999999998865 789999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCcc
Q 005913 603 LLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+|+||+.||+|+|||+....+
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSC
T ss_pred EEEEEecCCeEEEEECCCCCc
Confidence 999999999999999987543
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-36 Score=308.09 Aligned_cols=275 Identities=22% Similarity=0.318 Sum_probs=244.4
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
....++.+|.+.|+|++| +++++||+|+.||.|++|++.+ ......+..|.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~~~ 59 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYTGQ 59 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEECS
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeecCC
Confidence 455678899999999999 9999999999999999999864 23456677899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
+.|.+++|+|++++|++|+.||.|++|++... ..+..+.+|..+|.++.| ++.++++++.||.|++|| ..+..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence 99999999999999999999999999998754 456778899999999999 577999999999999999 66788
Q ss_pred EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
..+..|...+.+++|+| +++++++++.||.|++|| .++....+.. |...|.+++|+|++. +++++.||.|++||+
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM 212 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEET
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC
Confidence 88899999999999998 999999999999999999 5667777777 899999999999998 999999999999999
Q ss_pred CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
++++.+..+.+|.+.|++++|+|++ .|++++.||.|++||+.++.. +..+..+..+|.+++|+|
T Consensus 213 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 213 HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL---------------KQVITLPAISIWSVDCMS 276 (313)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE---------------EEEEECSSSCEEEEEECT
T ss_pred CchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce---------------eEEEeccCceEEEEEEcc
Confidence 9999999999999999999999999 599999999999999988643 345566778999999999
Q ss_pred CCcEEEEeeCCCC
Q 005913 657 RNLLFAAGALSKT 669 (670)
Q Consensus 657 ~~~~La~gs~dgs 669 (670)
++.+ ++|+.||+
T Consensus 277 ~~~~-~~~~~dg~ 288 (313)
T 3odt_A 277 NGDI-IVGSSDNL 288 (313)
T ss_dssp TSCE-EEEETTSC
T ss_pred CCCE-EEEeCCCc
Confidence 9994 56777774
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-38 Score=335.26 Aligned_cols=244 Identities=13% Similarity=0.182 Sum_probs=208.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..+.+.|+|++|+|++++||+|+.||.|+||++.... ......+.+|.+.|+++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~~ 61 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTCV 61 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEEE
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEEE
Confidence 3456789999999999999999999999999987410 13445567899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc---eeEEe
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRIM 501 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~---~~~~~ 501 (670)
+|+|++++|++|+.||+|++||+.++. ....+.+|...|++++|+|++.+|++|+.|+.|++||++.++ ....+
T Consensus 62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 999999999999999999999999877 677788899999999999999999999999999999999877 46777
Q ss_pred cc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC------------------CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 502 AG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 502 ~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
.+ |...|.+++|+|++++|++|+.|+.|++||+. .++++..+ +|...|.+++|+|+|++|
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL 220 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE
Confidence 77 99999999999999999999999999999985 35566666 899999999999999999
Q ss_pred EEEECCCeEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 563 ASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
++++.||.|++||+.++.. +..+.+|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999987 78889999999999999999999998766655 77665
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.4e-36 Score=313.22 Aligned_cols=260 Identities=23% Similarity=0.411 Sum_probs=229.7
Q ss_pred cceecCCCCC----CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 330 ~~~~l~~~~~----ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+++|+... ...+..++.+|...|++++|+|++++|++|+.|++|+|||+.+
T Consensus 40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----------------------- 96 (319)
T 3frx_A 40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------------------- 96 (319)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence 3566665321 1334567889999999999999999999999999999999875
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC------CCEEE
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA 479 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~------g~~l~ 479 (670)
......+.+|.+.|.+++|+|++.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|. +..++
T Consensus 97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 33556788999999999999999999999999999999997 5677888899999999999985 45899
Q ss_pred EEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 480 s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g 559 (670)
+++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+ ..|.+++|+|++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~ 249 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR 249 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888754 679999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeeeEEeeC--------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~--------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+|++++.+ .+++|++..+..+..+.. |...+.+++|+|+|++|++|+.||+|+|||+.+
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999988765 599999998877766543 456799999999999999999999999999865
No 47
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=333.64 Aligned_cols=300 Identities=18% Similarity=0.300 Sum_probs=237.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc--------
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-------- 421 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------- 421 (670)
+.+.|+|++|+|+|++||+|+.||.|+||++........ ...........+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~~ 89 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLKS 89 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGGT
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEeccccccccccccccc
Confidence 457899999999999999999999999999875321100 0011233566788898
Q ss_pred ----cCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcee---------------------------------------
Q 005913 422 ----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL--------------------------------------- 456 (670)
Q Consensus 422 ----~~V~~l~~sp~~--~~L~s~s~Dg~I~lwd~~~~~~~--------------------------------------- 456 (670)
+.|++++|+|++ ..|++++.||+|++|++.++...
T Consensus 90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp EEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 889999999998 79999999999999998764331
Q ss_pred EE-eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEE-------ecccCCCeeEEEEcCCC-CEEEEEEcC
Q 005913 457 VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSSD 526 (670)
Q Consensus 457 ~~-~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~-------~~~~~~~v~~v~~~p~~-~~l~tgs~d 526 (670)
.. ..+|...|++++|+|++.+|++| .|++|++||+++ .+.+.. +.+|...|.+++|+|++ ++|++|+.|
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 12 36799999999999999999998 799999999984 444442 45899999999999998 999999999
Q ss_pred CcEEEEECCCCcE----EEEEecCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeCCC
Q 005913 527 KTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGHT 589 (670)
Q Consensus 527 g~I~iwd~~~~~~----~~~~~~h~~------------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~ 589 (670)
|.|++||+++++. +..+.+|.. .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|.
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 9999999999887 788888876 8999999999999999999 9999999997 88888898886
Q ss_pred cc---------------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC----------------cc-cc
Q 005913 590 SC---------------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT----------------NR-LR 637 (670)
Q Consensus 590 ~~---------------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~----------------~~-~~ 637 (670)
.. +.+++|+|++.+|++|+.||.|++||+.++............ .. ..
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 42 334999999999999999999999999987653211110000 00 00
Q ss_pred cccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
...........|.+++|+|++.+||+|+.++
T Consensus 408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 408 ISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp EEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccccccCCceeEEEECCCCCEEEEEecce
Confidence 0001123456799999999999999998875
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=317.47 Aligned_cols=270 Identities=21% Similarity=0.380 Sum_probs=215.4
Q ss_pred ccceecCCCCCCce-eEEEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 329 RNRVHLSSAALPSV-SFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 329 ~~~~~l~~~~~ps~-~~~t~-~~-~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
...+++|+...... ...++ .. |.+.|++++|+|++++||+|+.|+.|+||++......
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~------------------- 93 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR------------------- 93 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence 35678887654432 22333 33 7889999999999999999999999999998531100
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEE
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~ 481 (670)
.........+.+|.+.|++++|+|++++|++|+.|++|++||+... +++..+.+|...|.+++|+|++.+|++|
T Consensus 94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence 0012345677899999999999999999999999999999999432 4567788999999999999999999999
Q ss_pred ECCCcEEEEECCCC--ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC--------cEEEEEec-CCC
Q 005913 482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS 548 (670)
Q Consensus 482 s~dg~v~lwd~~~~--~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--------~~~~~~~~-h~~ 548 (670)
+.|++|++||..++ +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++ .+...+.+ |..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 99999999998766 677889999999999999998 779999999999999998764 34455554 889
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe--eeEE-eeCCCc-ceEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYSC--EGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~--~~~~-~~~h~~-~V~sl~~s~--~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.|.+++|++++ +|++++.||.|++||..++. .+.. ..+|.. .|.+++|+| ++++|++|+.||+|+||++..
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999765 89999999999999998874 3333 357886 899999999 789999999999999999865
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=325.32 Aligned_cols=289 Identities=17% Similarity=0.248 Sum_probs=246.1
Q ss_pred EEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCCc------cccccCCCCCCCCCCCccccCCCCCccc
Q 005913 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS 413 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (670)
+..+.|.+.|+|++|+|+++ +||+|+.||.|+||++ ..... ...... ....
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 100 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL 100 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence 34566678999999999999 9999999999999999 54221 000000 0000
Q ss_pred eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++.+|++++.||.|++||+.
T Consensus 101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 112234788999999999999999999999999999 5678888899999999999999999999999999999999999
Q ss_pred CCceeEEecccCCC---------------eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 005913 494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (670)
Q Consensus 494 ~~~~~~~~~~~~~~---------------v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~ 558 (670)
+++.+..+..+... +.+++|+|++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 99999988887776 9999999875 5888999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 559 g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+.++..
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--------------- 322 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL--------------- 322 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE---------------
T ss_pred CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE---------------
Confidence 9999999999999999999999999999999999999999999 999999999999999987542
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..+..+..+|.+++|+|++.+|++|+.||+
T Consensus 323 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp EEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred eEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 3455567789999999999999999999875
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-36 Score=323.07 Aligned_cols=239 Identities=30% Similarity=0.619 Sum_probs=218.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.|++++|+|||++||+|+.||.|+|||+.+ ......+.+|...|++++|+|+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p~ 176 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFPS 176 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcCC
Confidence 499999999999999999999999999875 2345667899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-------ccc
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AGH 504 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~-------~~~ 504 (670)
+++|++|+.|++|++||+.+++....+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+ .+|
T Consensus 177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255 (393)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence 9999999999999999999988877776 556799999999 8999999999999999999998887766 578
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------------CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
...|.+++|+|++++|++|+.||+|++||+++ +.+...+.+|...|.+++|+|++.+|++|+.||.|+
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999975 345667889999999999999999999999999999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEcC------CCCEEEEEECCCcEEEEeCCC
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYSC------EGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s~------~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+||+.+++++..+.+|.+.|.+++|++ ++++|++|+.||+|+||++..
T Consensus 336 iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999999986 688999999999999999865
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.9e-36 Score=351.23 Aligned_cols=281 Identities=22% Similarity=0.361 Sum_probs=255.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.++.+|.+.|+|++|||++++||+|+.||.|+||++.+ ......+.+|.++|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV 58 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence 46788899999999999999999999999999999865 33556778999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~ 503 (670)
++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.++++++.||+|++||++++ .....+.+
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 67778889
Q ss_pred cCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcC--CCCEEEEEECCCeEEEEeCCCC
Q 005913 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 504 ~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
|...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999 88999999999999999999888877776655 8899999999 9999999999999999999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
+.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++.. +..+..+..+|.+++|+|++.
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV---------------EKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE---------------EEEECCSSSSEEEEEECTTCG
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEeecCCCcEEEEEEccCCC
Confidence 99999999999999999999999999999999999999987543 345556677899999999986
Q ss_pred --EEEEeeCCC
Q 005913 660 --LFAAGALSK 668 (670)
Q Consensus 660 --~La~gs~dg 668 (670)
++++|+.++
T Consensus 284 ~~~~~~~~~~~ 294 (814)
T 3mkq_A 284 KNYIASGFDNG 294 (814)
T ss_dssp GGEEEEEETTE
T ss_pred ceEEEEEeCCC
Confidence 577776553
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=343.34 Aligned_cols=295 Identities=10% Similarity=0.025 Sum_probs=229.9
Q ss_pred CCCCEEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEECCCCCccccccCCCCCCCCCCC
Q 005913 350 THNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR 401 (670)
Q Consensus 350 ~~~~V~~l~fs~d~---------~~La~-------------------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~ 401 (670)
+.+.|.|++|+|++ ++||+ |+.||+|+||++......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~--------------- 196 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH--------------- 196 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---------------
Confidence 56778888888775 56666 457889999998642110
Q ss_pred ccccCCCCCccceeeeecCccCEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------eEEeeCCCc
Q 005913 402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHNY 464 (670)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~~ 464 (670)
......+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.. ...+.+|..
T Consensus 197 ---------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 197 ---------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ---------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred ---------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 0112345678899999999997 57999999999999999986642 346788999
Q ss_pred cEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEE--EEcCCC-CEEEEEEcCCcEEEEECCCCcEE
Q 005913 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGECV 540 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v--~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~ 540 (670)
.|++++|++++ .|++|+.||+|++||++++ .+...+.+|...|.++ +|+|++ ++|++|+.|++|++||+++++++
T Consensus 268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 99999999864 8999999999999999876 4566788999999999 578887 89999999999999999998887
Q ss_pred EEEecCCC--CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 541 RIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 541 ~~~~~h~~--~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
..+.+|.. .|.+++|+|++..+++++.|+.|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 77777753 5889999999999999999999999999999998889999999999999999999999999999999997
Q ss_pred CCCcccc--------------ccccc-cCC--------------cccccccccCCCCCCeEEEEEecCCc---EEEEeeC
Q 005913 619 TTSTKVL--------------KTEEK-SGT--------------NRLRSLKTLPTKSTPVYSLQFSRRNL---LFAAGAL 666 (670)
Q Consensus 619 ~~~~~~~--------------~~~~~-~~~--------------~~~~~~~~~~~~~~~V~~l~fs~~~~---~La~gs~ 666 (670)
....... ..... .+. .....+..+..|..+|.+|+|+|++. ++|+|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 5431110 00000 000 01123556778889999999999954 9999999
Q ss_pred CCC
Q 005913 667 SKT 669 (670)
Q Consensus 667 dgs 669 (670)
+|+
T Consensus 507 ~g~ 509 (524)
T 2j04_B 507 AGL 509 (524)
T ss_dssp TSE
T ss_pred Cce
Confidence 885
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-35 Score=314.18 Aligned_cols=260 Identities=25% Similarity=0.402 Sum_probs=219.2
Q ss_pred cceecCCCCCC------ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcc
Q 005913 330 NRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403 (670)
Q Consensus 330 ~~~~l~~~~~p------s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (670)
..+++|+.... ..+..++.+|...|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--------------------- 107 (343)
T 2xzm_R 49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--------------------- 107 (343)
T ss_dssp SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS---------------------
T ss_pred CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------
Confidence 46777765322 234567788999999999999999999999999999999875
Q ss_pred ccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCC-----
Q 005913 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG----- 475 (670)
Q Consensus 404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g----- 475 (670)
......+.+|.+.|++++|+|++++|++|+.|++|++||+.. ....... +|...|.+++|+|++
T Consensus 108 -------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 108 -------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp -------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred -------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccc
Confidence 234567889999999999999999999999999999999983 3333333 688899999999987
Q ss_pred -----CEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCC
Q 005913 476 -----HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM 549 (670)
Q Consensus 476 -----~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~ 549 (670)
.+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ ......+ .+...
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~ 257 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGST 257 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSC
T ss_pred cCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCc
Confidence 79999999999999994 4567778889999999999999999999999999999999954 4444444 35567
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE--Eee-----------CCCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~--~~~-----------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
|.+++|+|++.+++++ .|+.|++||+.++.... .+. +|...|++++|+|+|++|++|+.||+|++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 9999999999888755 57789999998876543 333 688899999999999999999999999999
Q ss_pred eCCCC
Q 005913 617 DVTTS 621 (670)
Q Consensus 617 d~~~~ 621 (670)
++.++
T Consensus 337 ~~~~g 341 (343)
T 2xzm_R 337 SFETS 341 (343)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 98653
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.3e-35 Score=305.39 Aligned_cols=262 Identities=29% Similarity=0.517 Sum_probs=233.1
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... ....+.+|...|++++|+|++++|++|+.||.|++||+..
T Consensus 44 dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------------------------- 96 (312)
T 4ery_A 44 DKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-------------------------- 96 (312)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence 3467777654333 3446678889999999999999999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|+
T Consensus 97 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 --GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 234566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEE---EEEcCCCCEEEE
Q 005913 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS---LAMSPDGRYMAS 564 (670)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~---l~~sp~g~~l~s 564 (670)
+||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+ ....+++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999988877664 56678999999999999999999999999999999999999888765433 333467899999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT 619 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~ 619 (670)
|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999999999999997 69999999864
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-36 Score=318.16 Aligned_cols=249 Identities=22% Similarity=0.396 Sum_probs=211.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.... ......+.+|.++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--------------------------~~~~~~l~gH~~~V~ 61 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--------------------------QILIADLRGHEGPVW 61 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--------------------------EEEEEEEECCSSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--------------------------cEEEEEEcCCCccEE
Confidence 456788999999999999999999999999999986411 123456889999999
Q ss_pred EEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCce--
Q 005913 426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP-- 497 (670)
Q Consensus 426 ~l~~sp--~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~-- 497 (670)
+++|+| ++++|++|+.|++|++||+.++. ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++....
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 999986 48899999999999999998764 56677899999999999997 88999999999999999987532
Q ss_pred -eEEecccCCCeeEEEEcCC-----------------CCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEc
Q 005913 498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS 556 (670)
Q Consensus 498 -~~~~~~~~~~v~~v~~~p~-----------------~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~s 556 (670)
...+.+|...|.+++|+|+ +++|++|+.|++|++||++.+ +++..+.+|...|.+++|+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 3455689999999999997 478999999999999999765 4667788999999999999
Q ss_pred CCC----CEEEEEECCCeEEEEeCCCC---e-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 557 p~g----~~l~sg~~dg~I~iwDl~~~---~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
|++ .+|++|+.||.|++||+.+. . ....+..|...|++++|+|++++|++|+.||+|+||+...
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 986 89999999999999999763 1 2334567899999999999999999999999999999754
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-35 Score=321.57 Aligned_cols=280 Identities=20% Similarity=0.291 Sum_probs=234.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..+.+..|++++++||+|+.||.|+||++.. ......+.+|.+.|++++|+|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~ 149 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP 149 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence 4456667899999999999999999999864 234455678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc---C---
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH---L--- 505 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~---~--- 505 (670)
++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++.+|++++.||+|++||+++++.+..+..| .
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888753 3
Q ss_pred ------------------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCC-EEEEE
Q 005913 506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG 565 (670)
Q Consensus 506 ------------------~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~sg 565 (670)
..+.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 344455567899999999999999999999998877764 4788999999999999 99999
Q ss_pred ECCCeEEEEeCCCCee-eEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913 566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP 643 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~-~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
+.||.|++||+++++. +..+.. |...|.++.| +++++|++++.||+|++|++........... ......+.
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~~~ 382 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIE------FETPTFLV 382 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEEC------TTSCEEEC
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCcccee------ccCccEEc
Confidence 9999999999998754 677776 6678888855 5788999999999999999987543211110 01122345
Q ss_pred CCCCCeEEEEEecCCc----EEEEeeC
Q 005913 644 TKSTPVYSLQFSRRNL----LFAAGAL 666 (670)
Q Consensus 644 ~~~~~V~~l~fs~~~~----~La~gs~ 666 (670)
.+...|.+++|+|++. ++++|+.
T Consensus 383 ~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 383 SNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp CSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred cCCcceEEEEEccCCCCcceEEEEcCC
Confidence 6788999999999999 5555543
No 57
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5e-36 Score=314.45 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=241.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
..|.+.|+|++|+|++++|++|+.||.|+||++..... ........+|...|+++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~ 62 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC 62 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence 35778899999999999999999999999999875210 11234556899999999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEeC-CCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005913 428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------- 494 (670)
Q Consensus 428 ~~sp~~~-~L~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~--------- 494 (670)
+|+|+++ +|++|+.||.|++||+ .++. ...+.+ |...|++++|+| +.++++++.|+.|++||+++
T Consensus 63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 9999999 9999999999999999 7664 477788 999999999999 99999999999999999987
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-Cc--EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT 570 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~ 570 (670)
++++..+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 66666666 88999999999887 99999999999999998 54 3445567888999999999 9999999999999
Q ss_pred EEEEeCCCC------eeeEEeeCCCc---------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913 571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 635 (670)
Q Consensus 571 I~iwDl~~~------~~~~~~~~h~~---------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 635 (670)
|++||+... +.+..+..|.. .|.+++|+|++++|++|+.||.|++||+.++..
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------ 285 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK------------ 285 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE------------
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH------------
Confidence 999999887 77788888865 999999999999999999999999999987643
Q ss_pred cccccccCCC-CCCeEEEEEecCCcEEEEeeCCCC
Q 005913 636 LRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 636 ~~~~~~~~~~-~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..+..+ ..+|.+++ |++.+|++|+.||+
T Consensus 286 ---~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 286 ---IKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ---EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ---hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 4556677 88999999 99999999999985
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=326.62 Aligned_cols=304 Identities=14% Similarity=0.240 Sum_probs=240.3
Q ss_pred eeEEEe-ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 342 VSFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 342 ~~~~t~-~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
....++ .+|.+.|+|++|+| ++++||+|+.||.|+||++...... .........+
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------------~~~~~~~~~~ 109 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----------------------EVYSSSLTYD 109 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----------------------CCCSCSEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----------------------cccceeeecc
Confidence 344556 56678999999999 9999999999999999998641000 0001112225
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEeeC------------CCccEeEEE--EecCCCEEEEEE
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSS 482 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~l~--~sp~g~~l~s~s 482 (670)
|.++|++++|+|++++|++|+.||+|++||+. ++.......+ +...+.++. +++++.++++|+
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999994 4554443332 344566666 557899999999
Q ss_pred CCCcEEEEECCCCceeEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--
Q 005913 483 HDRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP-- 557 (670)
Q Consensus 483 ~dg~v~lwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp-- 557 (670)
.||.|++||+++++++..+.+ |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+|
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 999999999999999999988 88999999999999999999999999999999999999886 7888999996654
Q ss_pred --CCCEEEEEECCCeEEEEeCCCCeeeEEeeC--------------------------CCcceEEEEEcCCCCEEEEEEC
Q 005913 558 --DGRYMASGDEDGTIMMWDLASGRCVTPLMG--------------------------HTSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 558 --~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--------------------------h~~~V~sl~~s~~g~~l~sgs~ 609 (670)
++.+|++|+.||.|++||+.+++++..+.+ |...|++++|+ ++++|++|+.
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA 348 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence 688999999999999999999998877764 44568889999 7799999999
Q ss_pred CCcEEEEeCCCCccccccccccC----------------------CcccccccccCCCCCCeEEEEEecC--CcEEEEee
Q 005913 610 DCTVKLWDVTTSTKVLKTEEKSG----------------------TNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGA 665 (670)
Q Consensus 610 Dg~I~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~V~~l~fs~~--~~~La~gs 665 (670)
||.|++||+.++........... ......+.....|...|.+++|+++ +.+|++|+
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999998765543321100 0001112233458889999999998 88999999
Q ss_pred CCCC
Q 005913 666 LSKT 669 (670)
Q Consensus 666 ~dgs 669 (670)
.||+
T Consensus 429 ~dG~ 432 (437)
T 3gre_A 429 NSGL 432 (437)
T ss_dssp TTSC
T ss_pred CCce
Confidence 9986
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-36 Score=328.28 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=233.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
+++++|+|++++|++|+.||.|++|++..... ...+..| ..+....|+|++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~ 109 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG----------------------------SKMLKRA-DYTAVDTAKLQM 109 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEET----------------------------TTTSCSC-CEEEEEEECSSS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccce----------------------------eeEEecC-CceEEEEEecCC
Confidence 55789999999999999999999999875211 1112234 445556789999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~ 513 (670)
++|++|+.||.|++||+.++.....+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeE---------------------EEEEcCCCCEEEEEECCC
Q 005913 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMIL---------------------SLAMSPDGRYMASGDEDG 569 (670)
Q Consensus 514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~---------------------~l~~sp~g~~l~sg~~dg 569 (670)
+|++++|++|+.||.|++||+++++.+..+.. |...|. +++|+|+|++|++|+.||
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999999999999988875 333444 455578999999999999
Q ss_pred eEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CC
Q 005913 570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KS 646 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 646 (670)
.|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|++||+.++.. .+..+.. +.
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------------~~~~~~~~~~ 335 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------------PVGEFLINEG 335 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEEESTT
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------------chhhhhccCC
Confidence 99999999998877765 5889999999999999 999999999999999988643 1233333 56
Q ss_pred CCeEEEEEecCCcEEEEeeCCCC
Q 005913 647 TPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 647 ~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+|.++.| +++.+|++|+.||+
T Consensus 336 ~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp SCEEEEEE-ETTEEEEEETTTEE
T ss_pred CCceEEEe-CCCCEEEEecCCcc
Confidence 67888855 57889999998874
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=315.65 Aligned_cols=250 Identities=22% Similarity=0.387 Sum_probs=221.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++.+|.+.|+|++|+|++++||+|+.||.|+||++... .......+.+|.+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~ 59 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 59 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence 56789999999999999999999999999999998631 1235567789999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 005913 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (670)
Q Consensus 426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~--~ 497 (670)
+++|+++ +++|++|+.||+|++||+.++. .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++... .
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence 9999987 8999999999999999999887 67778889999999999999 9999999999999999998763 4
Q ss_pred eEEecccCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCC--
Q 005913 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD-- 558 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~-- 558 (670)
...+.+|...|.+++|+| ++++|++|+.||.|++||++++. .+..+.+|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 456678999999999999 69999999999999999998764 45677889999999999999
Q ss_pred -CCEEEEEECCCeEEEEeCCCCe-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 559 -g~~l~sg~~dg~I~iwDl~~~~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
+.+|++++.||.|++||+.++. .+.....|...|++++|+|++++|++++.||.|++|++...
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8999999999999999999864 22223348899999999999999999999999999998743
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=327.86 Aligned_cols=277 Identities=20% Similarity=0.364 Sum_probs=242.6
Q ss_pred CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 352 ~~V~~l~fs~d~~-~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
..|.|++|+|+++ +||+| +.||.|+||++...... .......|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~ 66 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV 66 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence 3688999999987 99999 89999999998752210 01112358
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~ 495 (670)
...|++++|+|++.+|++|+.||.|++|++.+ ...+..+.+|..+|++++|+|+ +.+|++++.||.|++||+.++
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 89999999999999999999999999999987 4578888999999999999998 899999999999999999887
Q ss_pred c------eeE---EecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecC------CCCeEEEEEcCCC
Q 005913 496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG 559 (670)
Q Consensus 496 ~------~~~---~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------~~~I~~l~~sp~g 559 (670)
+ ... ....|...|.+++|+|+ +++|++++.||.|++||+++++.+..+..+ ...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 6 332 23578899999999999 789999999999999999999999988876 7889999999997
Q ss_pred -CEEEEEECCC---eEEEEeCCCC-eeeEEee-CCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccC
Q 005913 560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632 (670)
Q Consensus 560 -~~l~sg~~dg---~I~iwDl~~~-~~~~~~~-~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 632 (670)
.++++++.|+ .|++||++++ .++..+. +|...|++++|+| ++.+|++++.||+|++||+.++..
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--------- 297 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--------- 297 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE---------
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc---------
Confidence 6999999998 9999999986 6777787 8999999999999 999999999999999999987643
Q ss_pred CcccccccccCCCCCCeEEEEEecCC-cEEEEeeCCCC
Q 005913 633 TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT 669 (670)
Q Consensus 633 ~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs~dgs 669 (670)
+..+..|..+|.+++|+|++ .+|++|+.||+
T Consensus 298 ------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 298 ------LSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp ------EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred ------ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 45566788899999999999 89999999874
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-35 Score=305.28 Aligned_cols=245 Identities=22% Similarity=0.331 Sum_probs=211.9
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw 490 (670)
..+.+|.+.|++++|+|+|++|++|+.|++|+||++.. .+.+..+.+|..+|++++|++ ++.+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 356788999999999999986 48999999999999999
Q ss_pred ECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCC------
Q 005913 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------ 558 (670)
Q Consensus 491 d~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~------ 558 (670)
|+++++ .+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 56778889999999999997 8999999999999999998763 24567899999999999997
Q ss_pred -------CCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCC---CEEEEEECCCcEEEEeCCCCccc
Q 005913 559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 559 -------g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g---~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+++|++|+.||.|++||++++. ....+.+|...|.+++|+|++ .+|++|+.|++|+|||+......
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 567788999999999999984 89999999999999998764311
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.. ..+.....+...|.+++|+|+|.+||+|+.||+
T Consensus 243 ~~----------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 243 WK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp CE----------EEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred cc----------eeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 00 001112356778999999999999999999985
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.1e-36 Score=329.00 Aligned_cols=280 Identities=20% Similarity=0.250 Sum_probs=228.6
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
+...|...|+|++|+| ++++||+|+.||.|+|||+.... ......+.+|.+.|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V 167 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI 167 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence 4566788899999999 57899999999999999987421 12334567899999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 425 ~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
++++|+| ++.+|++|+.||+|++||+++......... +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 9999998 688999999999999999986654444333 344678999999999999999999999999975 567778
Q ss_pred cccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEE---EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913 502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~ 577 (670)
.+|...|.+++|+|++. ++++|+.|+.|++||+++++.... ..+|...|++++|+|+|.+|++|+.||.|++||+.
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 89999999999999886 788999999999999988765433 35789999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCccccccccccCCcccccc
Q 005913 578 SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSA------------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 639 (670)
Q Consensus 578 ~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 639 (670)
++.....+..|.. .+..+.|+|++.++++++. ++.|++||..++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~-------------- 392 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC-------------- 392 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE--------------
T ss_pred CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE--------------
Confidence 9988877766643 2445678888887777653 3579999998865321
Q ss_pred cccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913 640 KTLPTKSTPVYSL-QFSRRNLLFAAGAL 666 (670)
Q Consensus 640 ~~~~~~~~~V~~l-~fs~~~~~La~gs~ 666 (670)
.....+...|.++ +|+|+|.+||+|+.
T Consensus 393 ~l~~~~~~~v~s~~~fspdg~~lasg~d 420 (435)
T 4e54_B 393 QLYDPESSGISSLNEFNPMGDTLASAMG 420 (435)
T ss_dssp EECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred EEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence 1233567778887 69999999999874
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-35 Score=308.54 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=239.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
+.++|.+++|+|||++++++..++.+.+|.... ........+|...|++++|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~v~~~~~ 59 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----------------------------HARQINTLNHGEVVCAVTI 59 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----------------------------EEEEEEEECCSSCCCEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC----------------------------ccccceeccCCCceEEEEE
Confidence 345799999999999999988777665554321 1223344589999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce---eEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEec
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNAN---LVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIMA 502 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~~~ 502 (670)
+|++++|++++ ||.|++|++.++.. ...+. +|..+|.+++|+|++.++++++.||.|++||+++++ ....+.
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 99999999999 99999999987653 33333 789999999999999999999999999999999877 566778
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 662 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La 662 (670)
..+. |...+.+++|+|++++|++++.||.|++||+..... ..+..+..+|.+++|+|++.+|+
T Consensus 219 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 219 QQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----------------YQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp EEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----------------EEECCCSSCEEEEEECTTSSEEE
T ss_pred eeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----------------EEEcCCccceeEEEECCCCCEEE
Confidence 7764 778899999999999999999999999999987532 24456788999999999999999
Q ss_pred EeeCCCC
Q 005913 663 AGALSKT 669 (670)
Q Consensus 663 ~gs~dgs 669 (670)
+|+.||+
T Consensus 282 ~~~~dg~ 288 (337)
T 1gxr_A 282 STGKDNL 288 (337)
T ss_dssp EEETTSE
T ss_pred EecCCCc
Confidence 9999874
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-35 Score=307.23 Aligned_cols=253 Identities=22% Similarity=0.384 Sum_probs=224.1
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+.+|.+.|+|++|+|++++||+|+.||.|+||++..... .......+.+|.+.|++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------~~~~~~~~~~~~~~v~~ 62 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------NWELSDSWRAHDSSIVA 62 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------CEEEEEEEECCSSCEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------cceecceeccCCCcEEE
Confidence 467889999999999999999999999999999875211 12345667899999999
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECC
Q 005913 427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 427 l~~sp--~~~~L~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~ 493 (670)
++|+| ++++|++|+.||+|++||+.++ ..+..+.+|..+|.+++|+|+ +.+|++++.||.|++||++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 99999 6999999999999999999876 457778899999999999999 9999999999999999998
Q ss_pred CCceeEEec-------------ccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcE--EEEEecCCCCeEEEEE
Q 005913 494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM 555 (670)
Q Consensus 494 ~~~~~~~~~-------------~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~ 555 (670)
+++.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 876543332 67788999999997 99999999999999998887765 6777889999999999
Q ss_pred cCCC----CEEEEEECCCeEEEEeCCCC----------------------------------------------eeeEEe
Q 005913 556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL 585 (670)
Q Consensus 556 sp~g----~~l~sg~~dg~I~iwDl~~~----------------------------------------------~~~~~~ 585 (670)
+|++ .+|++|+.||.|++||++++ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 89999999999999999875 567778
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+|...|++++|+|++++|++|+.||.|+||++..+..
T Consensus 303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 89999999999999999999999999999999987653
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-34 Score=317.05 Aligned_cols=283 Identities=25% Similarity=0.436 Sum_probs=246.5
Q ss_pred cCCCCCCceeEEEeecCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcc
Q 005913 334 LSSAALPSVSFYTFINTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412 (670)
Q Consensus 334 l~~~~~ps~~~~t~~~~~~~-V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (670)
.|.......+..++.+|.+. ++|+.| ++++|++|+.||.|++||+.+ ..
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~ 153 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KK 153 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------Cc
Confidence 44444444556678888877 577766 567999999999999999875 33
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw 490 (670)
....+.+|.+.|++++|+|++ .|++|+.||+|++||+.++..+..+.+|..+|.+++|++ ++.++++|+.||+|++|
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 556678999999999999988 999999999999999999999999999999999999994 77899999999999999
Q ss_pred ECCCCce-----------------------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC
Q 005913 491 SMDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR 547 (670)
Q Consensus 491 d~~~~~~-----------------------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~ 547 (670)
|+.+... +..+.+|...|.++ +++++++++|+.||.|++||+++++++..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 9987653 45677888888887 5788999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
..|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++|+.||+|++||+.+.....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-- 386 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-- 386 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee--
Confidence 999999999999999999999999999999999999999999999999997 5799999999999999998754321
Q ss_pred ccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.. .+...+..++|++++.++++|+ ||
T Consensus 387 -------------~~-~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 387 -------------SY-HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp -------------EE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred -------------ee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence 11 2455688899999999999998 55
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-35 Score=316.91 Aligned_cols=296 Identities=23% Similarity=0.350 Sum_probs=247.1
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005913 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKV 377 (670)
Q Consensus 298 ~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~I 377 (670)
+..+..+|....+++...+.+.....+.......+++|+.............|.+.|++++|+|++++|++|+.||.|+|
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 44455555555555555555544332333456689999887666555444557889999999999999999999999999
Q ss_pred EECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcee
Q 005913 378 WDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANL 456 (670)
Q Consensus 378 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-~~~~~ 456 (670)
|++.+ ......+.+|.+.|.+++|+ +++|++|+.||.|++||+. ....+
T Consensus 161 wd~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 161 YDVES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EETTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EECcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence 99875 23456677899999999995 6899999999999999999 45667
Q ss_pred EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-EEEEEE--cCCcEEEEE
Q 005913 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-YIATGS--SDKTVRLWD 533 (670)
Q Consensus 457 ~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs--~dg~I~iwd 533 (670)
..+.+|...|.+++|+|++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|++. ++++|+ .|+.|++||
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999764 555554 699999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 534 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~ 609 (670)
+.+++++..+. +...|.+++|+|+++++++++ .||.|++||+.++.... .+.+|.+.|.+++|+|+|.+|++++.
T Consensus 291 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 291 AATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred CCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 99999998885 667899999999999999954 89999999999876544 46789999999999999999999999
Q ss_pred CCcEEEEeCCCCccc
Q 005913 610 DCTVKLWDVTTSTKV 624 (670)
Q Consensus 610 Dg~I~iwd~~~~~~~ 624 (670)
||.|++|++.++...
T Consensus 370 dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 370 DENLKFWRVYDGDHV 384 (401)
T ss_dssp TSEEEEEECCC----
T ss_pred CCcEEEEECCCCccc
Confidence 999999999887643
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-35 Score=313.69 Aligned_cols=278 Identities=21% Similarity=0.281 Sum_probs=238.7
Q ss_pred EeecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCcc
Q 005913 346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSG 422 (670)
Q Consensus 346 t~~~~~~~--V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 422 (670)
...++... +.+++|++ ..+++++.||.|++|++.+.. ....+ ..|..
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~----------------------------~~~~~~~~~~~ 135 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS----------------------------VSALAETDEST 135 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC----------------------------EEEEEECCTTC
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc----------------------------EeEeeecCCCC
Confidence 33345444 55677775 457778899999999987521 22222 23889
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM 501 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~ 501 (670)
.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||++ ....+..+
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 99999999999999999999999999999999999999999999999994 6799999999999999998 56678888
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEeCCC
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLAS 578 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~--~dg~I~iwDl~~ 578 (670)
.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..|...|.+++|+|++. ++++|+ .||.|++||+.+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999765 556654 799999999999
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
++++..+. |...|.+++|+|++++|++++ .||.|++||+.++... ....+..|..+|.+++|+|
T Consensus 294 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------------~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 294 GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------------KQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-------------EEEEEECCSSCCCEEEECT
T ss_pred CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-------------eEEEecCCCCCEEEEEECC
Confidence 99988886 667899999999999999954 8999999998775321 2334567888999999999
Q ss_pred CCcEEEEeeCCCC
Q 005913 657 RNLLFAAGALSKT 669 (670)
Q Consensus 657 ~~~~La~gs~dgs 669 (670)
+|.+|++|+.||+
T Consensus 360 dg~~l~s~~~dg~ 372 (401)
T 4aez_A 360 DGRILSTAASDEN 372 (401)
T ss_dssp TSSEEEEECTTSE
T ss_pred CCCEEEEEeCCCc
Confidence 9999999999984
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.9e-35 Score=360.18 Aligned_cols=253 Identities=25% Similarity=0.389 Sum_probs=232.6
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
......++.+|.+.|+|++|||||++||+|+.||.|+||++.+ ......+.+
T Consensus 604 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~ 655 (1249)
T 3sfz_A 604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKA 655 (1249)
T ss_dssp SCCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECC
T ss_pred cccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEecc
Confidence 3444567788999999999999999999999999999999875 234566779
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCce
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+| ++.++++|+.||.|++||+++++.
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 999999999999999999999999999999999999999999999999999999 566899999999999999999999
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE----------------------------------
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---------------------------------- 543 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---------------------------------- 543 (670)
+..+.+|...|.+++|+|+++++++|+.||.|++||+.+++....+
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999876544332
Q ss_pred ---------------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913 544 ---------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 544 ---------------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
.+|...|.+++|+|++.++++++.||.|++||+.++..+..+.+|.+.|++++|+|+|+
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence 16778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCC
Q 005913 603 LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~ 620 (670)
+|++++.||+|++|++..
T Consensus 896 ~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEEEETTSCEEEEEHHH
T ss_pred EEEEEeCCCeEEEEEccc
Confidence 999999999999999653
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.9e-35 Score=311.73 Aligned_cols=269 Identities=16% Similarity=0.258 Sum_probs=235.2
Q ss_pred ccceecCCCCCCc-----eeEEEeecCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCCccccccCCCCCC
Q 005913 329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN 396 (670)
Q Consensus 329 ~~~~~l~~~~~ps-----~~~~t~~~~~~~V~~l~fs~d----~---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~ 396 (670)
...+++|+..... ....++..|...|++++|+|+ + ++|++|+.||.|++|++......
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---------- 104 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---------- 104 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence 3467788665443 345677789999999999999 9 99999999999999998752110
Q ss_pred CCCCCccccCCCCCccceeeeecC-----ccCEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CceeE---
Q 005913 397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV--- 457 (670)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~-L~s~s~Dg~I~lwd~~~------~~~~~--- 457 (670)
.......+.+| ...|.+++|+ |++++ |++|+.||.|++||+.+ +..+.
T Consensus 105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 01125566677 5999999999 99999 99999999999999998 66665
Q ss_pred --Ee-------eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---c---CCCeeEEEEcCCCCEEEE
Q 005913 458 --CY-------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT 522 (670)
Q Consensus 458 --~~-------~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~l~t 522 (670)
.+ ..|...|.+++|+|++ ++++++.||.|++||+++++++..+.. | ...|.+++|+|++++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 66 4488999999999999 999999999999999999999999998 8 999999999999999999
Q ss_pred EEcC---CcEEEEECCCCcEEEEEec-------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 523 gs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
++.| |.|++||+++++.+..+.+ |...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999 9999999999999999998 99999999999999999999999999999999999999999
Q ss_pred ------CC---------------CcceEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 005913 587 ------GH---------------TSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 587 ------~h---------------~~~V~sl~~s~~g----------~~l~sgs~Dg~I~iwd~~~~ 621 (670)
+| ...|++++|+|++ ++|++|+.||.|++|++.++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 88 9999999999998 79999999999999998764
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=301.81 Aligned_cols=285 Identities=19% Similarity=0.312 Sum_probs=240.1
Q ss_pred CceeEEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913 340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d---~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (670)
|......+.+|.+.|+|++|+|+ |++||+|+.||.|+||++.... ......
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~ 81 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA 81 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence 34445567788999999999999 6999999999999999987411 123366
Q ss_pred eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEE--ecCCCEEEEEECCCcEEEEECCC
Q 005913 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+. ..+|..+|++++| +|++.+|++++.||.|++||+++
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 78899999999999999999999999999999999887665 5669999999999 88999999999999999999999
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCE----EEEEECC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRY----MASGDED 568 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~----l~sg~~d 568 (670)
++++..+..+. .+.++.+. +..+++++.++.+++||++......... .+...+.++++.+++.. +++++.|
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 161 SNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred CcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 99999888664 56666665 4588999999999999998765543322 34456677777665554 9999999
Q ss_pred CeEEEEeCCCC---eeeEEeeCCCc------------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913 569 GTIMMWDLASG---RCVTPLMGHTS------------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633 (670)
Q Consensus 569 g~I~iwDl~~~---~~~~~~~~h~~------------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 633 (670)
|.|++||+... ..+..+.+|.. .|++++|+|++++|++|+.||.|++||+.++.
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----------- 306 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART----------- 306 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-----------
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-----------
Confidence 99999999987 56777788876 79999999999999999999999999998764
Q ss_pred cccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.+..+..+..+|.+++|+|+|.+|++|+.|+.
T Consensus 307 ----~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 307 ----KLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp ----EEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ----EEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 34566788899999999999999999998863
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=297.35 Aligned_cols=297 Identities=24% Similarity=0.419 Sum_probs=253.1
Q ss_pred ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCc-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005913 294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSD 372 (670)
Q Consensus 294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d 372 (670)
.|..|.++.++|.+.+++++..++|+..+.+.....+.+++|+..... ...+.+.+|...|+|++|+|++++||+|+.|
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D 88 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC
Confidence 456678899999999999988888876654444567889999876543 3445566778889999999999999999999
Q ss_pred CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913 373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (670)
Q Consensus 373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~ 452 (670)
|.|+||++.+ ......+.+|...+.++.+. +..+++++.++.+++|+...
T Consensus 89 g~v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~ 138 (318)
T 4ggc_A 89 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV 138 (318)
T ss_dssp SEEEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred CcEEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCC
Confidence 9999999875 34566778999998876665 78999999999999999887
Q ss_pred Cc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecccCCCeeEEEEcCCCCEE---EEEE
Q 005913 453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATGS 524 (670)
Q Consensus 453 ~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~l---~tgs 524 (670)
.. .+..+.+|...+..+.+++++.++++++.||+|++||+.+++ .......+.+.|.+++++|.+..+ ++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 64 456788999999999999999999999999999999998765 345566788899999999977543 3566
Q ss_pred cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 525 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
.+++|++||...+...... .+...+..+.|+|++..+++++ .||.|++||+.+++++..+.+|.+.|++++|+|+|+
T Consensus 219 ~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297 (318)
T ss_dssp TTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 7899999999998887665 4667899999999999888765 799999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCC
Q 005913 603 LLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~~ 621 (670)
+|+||+.||+|+|||+...
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998764
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-33 Score=308.74 Aligned_cols=289 Identities=21% Similarity=0.399 Sum_probs=248.7
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... +..++.+|.+.|++++|+|++ +|++|+.||.|++||+.+
T Consensus 141 dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-------------------------- 192 (464)
T 3v7d_B 141 DKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-------------------------- 192 (464)
T ss_dssp TSCEEEEETTTTE-EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------------------------
T ss_pred CCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------------------------
Confidence 3567888765443 456677899999999999988 999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCce-----------------------eEEeeCCC
Q 005913 409 GRKRSYTLYQGHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLNAN-----------------------LVCYKGHN 463 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~s--p~~~~L~s~s~Dg~I~lwd~~~~~~-----------------------~~~~~~h~ 463 (670)
......+.+|.+.|.+++|+ +++.+|++|+.||+|++||+.+... +..+.+|.
T Consensus 193 --~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 193 --GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp --TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred --CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 23456678899999999998 5778999999999999999987653 45677888
Q ss_pred ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 464 ~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (670)
..|.++ ++++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 888776 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 544 ~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+|...|.+++|+ +.+|++|+.||.|++||+.++....... |...+..++|++++.+|++|+ ||.|++||+.++..
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 9999999999998 5799999999999999999987766553 667788899999999999999 99999999998754
Q ss_pred ccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.. ..+..+..+|.+++|+ .+.++++++.+|
T Consensus 425 ~~--------------~~~~~~~~~v~~v~~~-~~~l~~~~~~~g 454 (464)
T 3v7d_B 425 VH--------------ANILKDADQIWSVNFK-GKTLVAAVEKDG 454 (464)
T ss_dssp EE--------------SCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred Ee--------------hhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence 21 1234567889999998 455666666665
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-33 Score=307.72 Aligned_cols=290 Identities=26% Similarity=0.496 Sum_probs=254.8
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.... .+..++.+|.+.|++++|+ ++++++|+.||.|++||+.+
T Consensus 138 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-------------------------- 188 (445)
T 2ovr_B 138 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-------------------------- 188 (445)
T ss_dssp TSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred CCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence 356788876543 3456778899999999998 67999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~ 488 (670)
......+.+|...|.+++|+ ++.+++|+.||+|++||+.+++.+..+.+|..+|.++.| ++.++++|+.||.|+
T Consensus 189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 23456677899999999996 678999999999999999999999999999999999999 788999999999999
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
+||+++++++..+.+|...|.+++| +++++++|+.||.|++||+++++++..+.+|...+.++.++ +.+|++|+.|
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 338 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence 9999999999999999999999999 88999999999999999999999999999999999988875 6799999999
Q ss_pred CeEEEEeCCCCeeeEEeeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
|.|++||+.+++.+..+.+ |...|++++|+ +++|++|+.||.|++||+.++........ .....+
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------~~~~~~ 406 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT----------LESGGS 406 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE----------CTTGGG
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec----------cccCCC
Confidence 9999999999999999886 88899999996 67999999999999999998754321100 111356
Q ss_pred CCCeEEEEEecCCcEEEEeeCCCC
Q 005913 646 STPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
..+|.+++|+|++.++|+|+.||+
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSS
T ss_pred CceEEEEEecCCEEEEEEcccCCC
Confidence 778999999999999999999986
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.8e-35 Score=308.51 Aligned_cols=260 Identities=22% Similarity=0.408 Sum_probs=223.8
Q ss_pred cceecCCCCCC-ceeEEE-e--ecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCC
Q 005913 330 NRVHLSSAALP-SVSFYT-F--INTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR 401 (670)
Q Consensus 330 ~~~~l~~~~~p-s~~~~t-~--~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~ 401 (670)
..+++|+.... ....+. + ..+...|++++|+|+ +.+|++|+.||.|+||++.+
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------- 104 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------- 104 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-------------------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-------------------
Confidence 46777765432 222222 2 225678999999999 67999999999999999874
Q ss_pred ccccCCCCCccceeeeecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCCCE
Q 005913 402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHY 477 (670)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g~~ 477 (670)
......+.+|...|++++|+| ++.+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.+
T Consensus 105 ---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 105 ---------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp ---------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred ---------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence 234566778999999999999 8999999999999999999999988888 689999999999999999
Q ss_pred EEEEECCCcEEEEECCCCceeEEec----------------------------ccCCCeeEEEEcCCCCEEEEEEcCCcE
Q 005913 478 FASSSHDRTARIWSMDRIQPLRIMA----------------------------GHLSDVDCVRWHINCNYIATGSSDKTV 529 (670)
Q Consensus 478 l~s~s~dg~v~lwd~~~~~~~~~~~----------------------------~~~~~v~~v~~~p~~~~l~tgs~dg~I 529 (670)
|++++.||.|++||+++++....+. +|...|.+++|+ ++++++++.||.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 9999999999999998765443333 399999999998 7799999999999
Q ss_pred EEEECCCCcE--------------EEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEeCCCCeee----EEeeCC-
Q 005913 530 RLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH- 588 (670)
Q Consensus 530 ~iwd~~~~~~--------------~~~~~~h~~~I~~l~~sp~--g~~l~sg~~dg~I~iwDl~~~~~~----~~~~~h- 588 (670)
++||++++.. +..+..|...|.+++|+|+ |++|++|+.||.|++||+.+++.. ..+.+|
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999988754 7888899999999999999 999999999999999999988643 467777
Q ss_pred -CcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 589 -TSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 589 -~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
...|++++|+|++++|++|+.||.|++||+.
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 7999999999999999999999999999985
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.6e-34 Score=327.90 Aligned_cols=262 Identities=27% Similarity=0.428 Sum_probs=225.9
Q ss_pred ccceecCCCCCC----ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccc
Q 005913 329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (670)
Q Consensus 329 ~~~~~l~~~~~p----s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (670)
...+++|+.... ..+...+.+|...|+|++|+|++++|++|+.||.|+|||+.+
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~---------------------- 461 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA---------------------- 461 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence 357788865332 345567889999999999999999999999999999999875
Q ss_pred cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCC--CEEE
Q 005913 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA 479 (670)
Q Consensus 405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g--~~l~ 479 (670)
......+.+|.+.|++++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++ ..++
T Consensus 462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 2345678899999999999999999999999999999998754433332 3688899999999986 6899
Q ss_pred EEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 480 s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g 559 (670)
+|+.|++|++||+++.+....+.+|.+.|.+++|+|++++|++|+.||+|++||+++++++..+.. ...|.+++|+|++
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNR 614 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887754 5679999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeeeEEeeCCC-------------------cceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~-------------------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+|++++ ++.|++||+.++..+..+..+. ..+++++|+|+|++|++|+.||+|+||++..
T Consensus 615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 9888776 5669999999998887765321 2378999999999999999999999999853
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=300.78 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=237.4
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+..|.+.|+|++|+| ++++||+|+.||.|+||++............. ..........+|...|
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV 102 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence 4567889999999999 99999999999999999998632211100000 0000001123699999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCceeEE
Q 005913 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 425 ~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
++++|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|. +.++++++.||.|++||+++++.+..
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 9999999 77899999999999999999988887776 6778999999994 45999999999999999999999999
Q ss_pred ecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCc-EEEEE---------------ecCCCCeEEEEEcCCCCEEE
Q 005913 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 501 ~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~I~~l~~sp~g~~l~ 563 (670)
+.+|...|.+++|+|+++ .+++|+.||.|++||++++. ++..+ .+|...|.+++|+|+|++|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 999999999999999998 58899999999999998775 44444 57888999999999999999
Q ss_pred EEECCCeEEEEeCCCCeeeEEeeCCC-----cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 564 SGDEDGTIMMWDLASGRCVTPLMGHT-----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~~~~~~~~h~-----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
+++.||.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+.++..
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------- 326 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------- 326 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE---------------
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc---------------
Confidence 99999999999999988765544321 1222222233456677778899999999988643
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+..+..|..+|.+++|+|++.+|++|+.||+
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 4566788899999999999999999999985
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=303.24 Aligned_cols=266 Identities=14% Similarity=0.244 Sum_probs=227.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d---~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
...+++|+............+|...|+|++|+|+ +++|++|+.||.|++|++....
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------- 101 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------------------- 101 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence 4578888877666555556688899999999998 7999999999999999987521
Q ss_pred CCCCCccceeeeecCccCEEEEEE------cCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCc----cEeEEE----
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASF------SPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ---- 470 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~l~---- 470 (670)
.....+.+|.+.|.++.| +|++++|++|+.||+|++||+.++. .+..+..|.. .|+++.
T Consensus 102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 134567789999999955 6889999999999999999999887 6777766554 899998
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEe---
Q 005913 471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI--- 544 (670)
Q Consensus 471 ~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--- 544 (670)
|+|++.++++++.||.|++||+++++.... ..|...|.+++|+| +++++++|+.||.|++||+++++.+..+.
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence 778999999999999999999999877544 56889999999999 99999999999999999998876554444
Q ss_pred --cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCC-------------------eeeEEeeCCCcceEEEEEcCCCC
Q 005913 545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 545 --~h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~~-------------------~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
+|...|++++|+|+++ +|++|+.||.|++||+.++ +.+..+.+|...|++++|+|+++
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 8999999999999998 8999999999999999754 46777889999999999999999
Q ss_pred EEE-EEECCCcEEEEeCCCCc
Q 005913 603 LLA-SGSADCTVKLWDVTTST 622 (670)
Q Consensus 603 ~l~-sgs~Dg~I~iwd~~~~~ 622 (670)
+|+ +++.||.|+|||+.+..
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TEEEEEETTSEEEEEEECC--
T ss_pred eEEEEecCCCcEEEEECCCcc
Confidence 998 89999999999998743
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-33 Score=308.74 Aligned_cols=275 Identities=28% Similarity=0.559 Sum_probs=242.1
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
..++..+|+|+.| ++++|++|+.||.|++||+.+ ......+.+|.+.|.+
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~ 178 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLC 178 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEE
Confidence 3456678999887 799999999999999999865 2345667899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee---EEecc
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAG 503 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~---~~~~~ 503 (670)
++| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||+|++||+.++... ..+.+
T Consensus 179 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 179 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred EEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence 999 68999999999999999999999999999999999999997 459999999999999999987765 67789
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
|...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.+++|+ +.++++|+.||.|++||+++++++.
T Consensus 255 ~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 330 (435)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEE
Confidence 9999999999 78899999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
.+.+|...|.+++| ++.+|++|+.||.|++||+..+..... ......+..+..|..+|.+++| ++.+|++
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence 99999999999999 788999999999999999866432110 0111245667789999999999 7888999
Q ss_pred eeCCCC
Q 005913 664 GALSKT 669 (670)
Q Consensus 664 gs~dgs 669 (670)
|+.||+
T Consensus 401 ~s~Dg~ 406 (435)
T 1p22_A 401 SSHDDT 406 (435)
T ss_dssp CCSSSE
T ss_pred EeCCCE
Confidence 999985
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.5e-35 Score=305.79 Aligned_cols=244 Identities=24% Similarity=0.334 Sum_probs=204.7
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw 490 (670)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|..+|++++|++ ++.+|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467899999999999999999999999999999998765 4567899999999999986 48999999999999999
Q ss_pred ECCCC--ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCC-----
Q 005913 491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD----- 558 (670)
Q Consensus 491 d~~~~--~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~----- 558 (670)
|++++ .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99876 356678899999999999998 78999999999999999987642 3445688899999999997
Q ss_pred ------------CCEEEEEECCCeEEEEeCCCC---eeeEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEEEeCC
Q 005913 559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVT 619 (670)
Q Consensus 559 ------------g~~l~sg~~dg~I~iwDl~~~---~~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~iwd~~ 619 (670)
+.+|++|+.|+.|++||+..+ .++..+.+|...|.+++|+|++ .+|++|+.||+|+||++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999765 4677888999999999999986 899999999999999987
Q ss_pred CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
...... .....+..+..+|++++|+|++.+||+|+.||+
T Consensus 247 ~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~ 285 (316)
T 3bg1_A 247 DASSNT-----------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNK 285 (316)
T ss_dssp STTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred Cccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence 632100 001122346779999999999999999999986
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-33 Score=301.60 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=223.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDS-------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg-------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
+..-+|.|++|+||+++||+|+.+. .|++|++........... .......+.+|.
T Consensus 12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------~~~~~~~l~~~~ 73 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------HILSEFALEDND 73 (365)
T ss_dssp ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE------------------EEEEEEECCTTS
T ss_pred CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee------------------eeeeEEEccCCC
Confidence 3445799999999999999997654 499999875322110000 011223466788
Q ss_pred cCEEEEEEcCCCCEEEEEe-----------CCCeEEEEeCCCCceeEE----e-----eCCCccEeEEEEecCCCEEEEE
Q 005913 422 GPVYSASFSPLGDFILSSS-----------ADTTIRLWSTKLNANLVC----Y-----KGHNYPVWDVQFNPQGHYFASS 481 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s-----------~Dg~I~lwd~~~~~~~~~----~-----~~h~~~V~~l~~sp~g~~l~s~ 481 (670)
..|.+++++ ++.+++|+ .|+++++|++........ . ..+...+.+++|+|||++++++
T Consensus 74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence 889888776 56666654 577899999876543221 1 1234558899999999998765
Q ss_pred E--CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE--EecCCCCeEEEEEcC
Q 005913 482 S--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP 557 (670)
Q Consensus 482 s--~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp 557 (670)
+ .|++|++||+.+++++..+. |...|.+++|+|+|+++++++. +.+++|+..+++.+.. ..+|...|.+++|+|
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 5 68999999999999988876 7788999999999999999985 5577777777776543 346788899999999
Q ss_pred CCCEEEEEECCC----eEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913 558 DGRYMASGDEDG----TIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (670)
Q Consensus 558 ~g~~l~sg~~dg----~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 629 (670)
+|.++++++.|+ .+++||+..+.. ...+.+|...|++++|+|+|++||+|+.|++|+|||+.++..
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~------ 303 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM------ 303 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE------
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE------
Confidence 999999999887 688999877653 345778999999999999999999999999999999988643
Q ss_pred ccCCcccccccc-cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 630 KSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 630 ~~~~~~~~~~~~-~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+.. +..|..+|++|+|+|+|++||+|+.|++
T Consensus 304 ---------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 304 ---------SKIFKQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp ---------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred ---------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 333 4678999999999999999999999986
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-33 Score=304.97 Aligned_cols=270 Identities=22% Similarity=0.383 Sum_probs=234.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
+++++||++ ++||+|. |++|+|||..+.. ......+.+|...|++++|+|+|
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspdg 159 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG 159 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCCC
Confidence 788999975 6899885 8999999987521 11223345788899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~ 512 (670)
++|++|+.||+|++||+.+++.+..+.+|...+.++.|+ +.++++|+.|+.+++||.... ..+..+.+|...+.++.
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999999999999999999999999999999999988775 679999999999999998764 45677889999999999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCC-EEEEE--ECCCeEEEEeCCCCeeeEEe
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMASG--DEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~-~l~sg--~~dg~I~iwDl~~~~~~~~~ 585 (670)
|+|+++++++++.|+.|++||..+++ .+.....|.+.|.+++|+|++. .++++ +.|+.|++||+.++.++..+
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 99999999999999999999998765 3566778999999999999654 55554 47999999999999999888
Q ss_pred eCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
..| ..+.++.|+++++.+++++ .||.|+|||+.++. .+..+.+|..+|.+++|+|+|.+||+
T Consensus 318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---------------~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---------------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 765 4688999999999988876 78999999998764 35677889999999999999999999
Q ss_pred eeCCCC
Q 005913 664 GALSKT 669 (670)
Q Consensus 664 gs~dgs 669 (670)
|+.||+
T Consensus 382 ~s~D~t 387 (420)
T 4gga_A 382 AAADET 387 (420)
T ss_dssp EETTTE
T ss_pred EecCCe
Confidence 999985
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.3e-33 Score=315.16 Aligned_cols=293 Identities=20% Similarity=0.249 Sum_probs=244.4
Q ss_pred cceecCCCCCCceeEEEeecCCC---CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~---~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+++|+... ..+..++..|.. .|++++|+|+ +++|++|+.||.|++||+...
T Consensus 183 ~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------------------- 239 (615)
T 1pgu_A 183 GSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---------------------- 239 (615)
T ss_dssp TEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC----------------------
T ss_pred CcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC----------------------
Confidence 5677786433 334556677888 8999999999 999999999999999998752
Q ss_pred CCCCCccceeee-e---cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCE
Q 005913 406 GPNGRKRSYTLY-Q---GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHY 477 (670)
Q Consensus 406 ~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~ 477 (670)
.....+ . +|.+.|.+++|+ ++.+|++++.||+|++||+.+++.+..+..+ ...+.++.|+ ++.+
T Consensus 240 ------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 240 ------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp ------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred ------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 233344 4 799999999999 9999999999999999999999998888876 4678888886 8899
Q ss_pred EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC-----------------------------------------
Q 005913 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN----------------------------------------- 516 (670)
Q Consensus 478 l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~----------------------------------------- 516 (670)
+++++.||.|++||+.+++++..+.+|...|.+++| |+
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence 999999999999999988887777776666555555 32
Q ss_pred -----------------------------------------------------------------CCEEEEEEc-CCcEE
Q 005913 517 -----------------------------------------------------------------CNYIATGSS-DKTVR 530 (670)
Q Consensus 517 -----------------------------------------------------------------~~~l~tgs~-dg~I~ 530 (670)
++++++++. |+.|+
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 344555555 66666
Q ss_pred EEECCCCcEE-EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcC---------
Q 005913 531 LWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSC--------- 599 (670)
Q Consensus 531 iwd~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~--------- 599 (670)
+||+.+++.. ..+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+.+ |...|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 6666655444 45567889999999999999999999999999999999999999888 999999999999
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 600 -~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
++++|++|+.||+|++||+.++. ..+..+..|..+|.+++|+|++. |++|+.||+
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~ 606 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPM--------------KIIKALNAHKDGVNNLLWETPST-LVSSGADAC 606 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTT--------------CCEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred cCCCEEEEEcCCCcEEEEECCCCc--------------eechhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence 99999999999999999998753 13456778899999999999999 999999985
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=337.35 Aligned_cols=251 Identities=22% Similarity=0.383 Sum_probs=221.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
++.+|.+.|+|++|+|++++|++|+.||.|+||++... .......+.+|.++|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~ 57 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence 46789999999999999999999999999999998631 1345567889999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCC--ce
Q 005913 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP 497 (670)
Q Consensus 426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~--~~ 497 (670)
+++|+|+ +++|++|+.||+|++||+.++. .+..+.+|..+|++++|+|+ +.++++|+.||+|++||++++ ..
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 9999988 9999999999999999999886 67778889999999999999 999999999999999999876 34
Q ss_pred eEEecccCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCC----cEEEEEecCCCCeEEEEEcCC--
Q 005913 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD-- 558 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~sp~-- 558 (670)
...+.+|...|.+++|+| +++++++|+.||.|++||++++ .....+.+|.++|++++|+|+
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence 556778999999999999 5899999999999999999887 566778899999999999999
Q ss_pred -CCEEEEEECCCeEEEEeCCCCe-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 559 -g~~l~sg~~dg~I~iwDl~~~~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+.+|++|+.||.|++||+.++. .+.....|.+.|++++|+|+|++|++|+.||.|++|++....
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999999999999998874 333445688999999999999999999999999999998543
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-33 Score=345.17 Aligned_cols=312 Identities=23% Similarity=0.382 Sum_probs=261.9
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... +..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+
T Consensus 636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------- 688 (1249)
T 3sfz_A 636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------------- 688 (1249)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 3467788765443 4557778999999999999999999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp--~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~ 486 (670)
......+.+|.+.|.+++|+| ++.++++|+.||+|++||+.++..+..+.+|..+|++++|+|++.++++|+.||+
T Consensus 689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 235567789999999999999 4558999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEe-------------------------------------------------------cccCCCeeEE
Q 005913 487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV 511 (670)
Q Consensus 487 v~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~v 511 (670)
|++||+.++.....+ .+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999998765433222 2677889999
Q ss_pred EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--------------
Q 005913 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-------------- 577 (670)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-------------- 577 (670)
+|+|+++++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|+|++|++++.||.|++||+.
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 999999999999999999999999999999999999999999999999999999999988888743
Q ss_pred -----------------------------------------------------------------CCeeeEEeeCCCcce
Q 005913 578 -----------------------------------------------------------------SGRCVTPLMGHTSCV 592 (670)
Q Consensus 578 -----------------------------------------------------------------~~~~~~~~~~h~~~V 592 (670)
++..+..+.+|.+.|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 233445556799999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc-------------------C------CcccccccccCCCCC
Q 005913 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-------------------G------TNRLRSLKTLPTKST 647 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------------------~------~~~~~~~~~~~~~~~ 647 (670)
++++|+|+|++|++++.||+|++||+.++.......... + ......+..+..|..
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 999999999999999999999999998865432211100 0 011123445667888
Q ss_pred CeEEEEEecCCcEEEEeeCCCC
Q 005913 648 PVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 648 ~V~~l~fs~~~~~La~gs~dgs 669 (670)
+|.+++|+|++.+|++|+.||+
T Consensus 1087 ~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1087 TVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp CCCCEEECSSSSSCEEECCSSC
T ss_pred cEEEEEECCCCCEEEEEcCCCc
Confidence 9999999999999999999885
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=319.51 Aligned_cols=276 Identities=7% Similarity=0.036 Sum_probs=221.1
Q ss_pred HcccceecCCCCCCce---eEEEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCC
Q 005913 327 DLRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397 (670)
Q Consensus 327 ~~~~~~~l~~~~~ps~---~~~t~~~~~~~V~~l~fs~d------~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~ 397 (670)
.....+++|+...... ...++..+.+.|++++|+|+ +.+||+|+.||+|+||++..........
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------- 252 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF------- 252 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------
Confidence 3456788987543322 12455667788999999997 5799999999999999987532110000
Q ss_pred CCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEE--EEecC
Q 005913 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQ 474 (670)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l--~~sp~ 474 (670)
. ........+.+|.+.|++++|+++ ..|++|+.||+|++||+.++. ....+.+|..+|+++ .|+|+
T Consensus 253 -------~---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~ 321 (524)
T 2j04_B 253 -------K---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF 321 (524)
T ss_dssp -------E---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT
T ss_pred -------e---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC
Confidence 0 001233467889999999999986 489999999999999999764 456788999999999 57888
Q ss_pred C-CEEEEEECCCcEEEEECCCCceeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE
Q 005913 475 G-HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551 (670)
Q Consensus 475 g-~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~ 551 (670)
+ .+|++|+.|++|++||++++++...+.+|.. .|.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|+
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 7 8999999999999999998888777777754 588999999999999999999999999999999888999999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCC--------------------------------------------CeeeEEeeC
Q 005913 552 SLAMSPDGRYMASGDEDGTIMMWDLAS--------------------------------------------GRCVTPLMG 587 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~--------------------------------------------~~~~~~~~~ 587 (670)
+++|+|+|++|++|+.||+|++||+.. +.++..+.+
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence 999999999999999999999998531 111233456
Q ss_pred CCcceEEEEEcCCCC---EEEEEECCCcEEEEeCCC
Q 005913 588 HTSCVWTLAYSCEGS---LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 588 h~~~V~sl~~s~~g~---~l~sgs~Dg~I~iwd~~~ 620 (670)
|...|++++|+|++. ++++|+.||+|+||++..
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 888999999999954 999999999999999876
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5e-34 Score=307.71 Aligned_cols=276 Identities=17% Similarity=0.291 Sum_probs=233.0
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
...+++++|+...++ +|+.||.|+||++...+.. ......+.+|.+.|++++|+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p 91 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCP 91 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCC
Confidence 345688898865544 5789999999998642110 123445678999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe-
Q 005913 432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM- 501 (670)
Q Consensus 432 -~~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~- 501 (670)
++++|++|+.||+|++|++.++ ..+..+.+|...|++++|+|++ .+|++|+.||+|++||+++++.+..+
T Consensus 92 ~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 8999999999999999999987 6688899999999999999998 69999999999999999999999999
Q ss_pred -cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ecCCCC-eEEEEEcCCCCEEEEE---ECCCeEEEEe
Q 005913 502 -AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWD 575 (670)
Q Consensus 502 -~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~-I~~l~~sp~g~~l~sg---~~dg~I~iwD 575 (670)
.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.+. +.+++|+|++.+|++| +.||.|++||
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 889999999999999999999999999999999999999988 688776 8999999999999999 7999999999
Q ss_pred CCCCee-eEEee-CCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913 576 LASGRC-VTPLM-GHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 576 l~~~~~-~~~~~-~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
++++.. +.... .|...|.+++|+|++++|+++ +.||.|++||+.++... ...+..+. +..+|.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----------~~~l~~~~-~~~~v~~~ 319 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----------LHYLSMFS-SKESQRGM 319 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----------EEEEEEEC-CSSCCSEE
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----------eEeecccc-cCCcccce
Confidence 998764 33333 577889999999999998754 57999999999876521 01222333 56889999
Q ss_pred EEecCCcEEEEe
Q 005913 653 QFSRRNLLFAAG 664 (670)
Q Consensus 653 ~fs~~~~~La~g 664 (670)
+|+|++.+++++
T Consensus 320 ~~sp~~~~~~s~ 331 (402)
T 2aq5_A 320 GYMPKRGLEVNK 331 (402)
T ss_dssp EECCGGGSCGGG
T ss_pred EEecccccceec
Confidence 999999887654
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-33 Score=327.69 Aligned_cols=307 Identities=22% Similarity=0.325 Sum_probs=256.7
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
..+++|+.... ....++..|.+.|++++|+|++++||+|+.||.|+||++.+
T Consensus 35 g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------------------------- 86 (814)
T 3mkq_A 35 GRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------- 86 (814)
T ss_dssp SEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------
T ss_pred CEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------
Confidence 46788875543 34456678899999999999999999999999999999875
Q ss_pred CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcE
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA 487 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v 487 (670)
......+.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++..|++++.||+|
T Consensus 87 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 2355667889999999999999999999999999999999987 66778889999999999999 88999999999999
Q ss_pred EEEECCCCceeEEecccC-CCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 488 RIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~-~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
++||+.++.....+..+. ..+.+++|+| +++++++|+.||.|++||+.+++++..+.+|...|.+++|+|+|.+|++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999888887777555 8899999999 9999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCE-EEEEECCCcEEEEeCCCCccccccccc-------------
Q 005913 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTSTKVLKTEEK------------- 630 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~------------- 630 (670)
++.||.|++||+.+++.+..+..|...|++++|+|++.. +++++.++.+.+|++............
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 999999999999999999999999999999999999873 244445777889998765433222100
Q ss_pred ---------------cCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 631 ---------------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 631 ---------------~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
.+............+...+.+++|+|+|+++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 00000011122234455688999999999888887
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=289.84 Aligned_cols=264 Identities=16% Similarity=0.226 Sum_probs=234.3
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.... ....++..|.+.|++++|+|++++|++|+.||.|++|++.+.
T Consensus 53 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------- 106 (369)
T 3zwl_B 53 DSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG------------------------- 106 (369)
T ss_dssp SSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------------------------
T ss_pred CCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------
Confidence 346788875433 344567788999999999999999999999999999998752
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc-----------eeEEeeCCCc--cEeEEE
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQ 470 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~l~ 470 (670)
.....+. |...|.+++|+|++.++++++.+ |.|++||+.... ....+..|.. .+.+++
T Consensus 107 ---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 107 ---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp ---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred ---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 2233333 88899999999999999999999 999999987653 3445556666 899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC
Q 005913 471 FNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549 (670)
Q Consensus 471 ~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~ 549 (670)
|+|++.++++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 999999999999999999999998 78888999999999999999999999999999999999999999998887 7788
Q ss_pred eEEEEEcCCCCEEEEEECCC--------------eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913 550 ILSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg--------------~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
+.+++|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcc
Q 005913 616 WDVTTSTK 623 (670)
Q Consensus 616 wd~~~~~~ 623 (670)
|++..+..
T Consensus 342 w~~~~~~~ 349 (369)
T 3zwl_B 342 HHFEKSYF 349 (369)
T ss_dssp EEECHHHH
T ss_pred EECccccc
Confidence 99987543
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-33 Score=297.83 Aligned_cols=267 Identities=16% Similarity=0.165 Sum_probs=228.7
Q ss_pred ccceecCCCCCCc-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 329 ~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
...+++|+..... .+..++..|...|++++|+|++++|++|+.||.|++|++....
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------------- 85 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----------------------- 85 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence 4567788755443 2455677889999999999999999999999999999986421
Q ss_pred CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 483 (670)
......+.+|...|++++|+|++++|++|+.||.|++||+..... .....+|...|.+++|+|++.+|++++.
T Consensus 86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 112333467899999999999999999999999999999998763 2333568999999999999999999999
Q ss_pred CCcEEEEECC------------------CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec
Q 005913 484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG 545 (670)
Q Consensus 484 dg~v~lwd~~------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 545 (670)
||.|++||++ .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999953 6778888889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC--Cee--------------------------------e------EEe
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--------------------------------V------TPL 585 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~--~~~--------------------------------~------~~~ 585 (670)
|..+|.+++|+|++.+|++| .||.|++||+.+ +.. . ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 99999999999999988888 899999999987 421 0 223
Q ss_pred -eCCCcceEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCc
Q 005913 586 -MGHTSCVWTLAYS-CEG---SLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 586 -~~h~~~V~sl~~s-~~g---~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
.+|...|++++|+ ++| .+|++|+.||+|++|++.+..
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 4899999999976 676 999999999999999987754
No 91
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=329.99 Aligned_cols=234 Identities=14% Similarity=0.166 Sum_probs=196.8
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.....+|.+.|+|++|+|++++||+|+.||.|+||+.... .......|..+
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----------------------------~~~~~~~~~~~ 60 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----------------------------EVVIKLEDRSA 60 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----------------------------EEEEECSSCCC
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----------------------------EEEEEcCCCCC
Confidence 3455688999999999999999999999999999997531 11222347889
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-----
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----- 498 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~----- 498 (670)
|.+++|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++.++++|+.||+|++||+++++..
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~ 138 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD 138 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence 99999999 8899999999999999999999888886 6678999999999999999999999999999987653
Q ss_pred ------EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecC------------------CCCeEEE
Q 005913 499 ------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSL 553 (670)
Q Consensus 499 ------~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------------------~~~I~~l 553 (670)
..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+++++++..+..| ...|.++
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence 223578899999999996 5789999999999 9999999999888766 4679999
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCeeeEE--e---eC-------------CCcceEEEEEc----CCC-CEEEEEEC
Q 005913 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAYS----CEG-SLLASGSA 609 (670)
Q Consensus 554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~--~---~~-------------h~~~V~sl~~s----~~g-~~l~sgs~ 609 (670)
+|+|+|.+|++|+.||.|++||+++++++.. + .. |...|++++|+ |++ .+|++|+.
T Consensus 218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 9999999999999999999999999887653 2 11 34578889884 332 34555543
No 92
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-33 Score=316.09 Aligned_cols=281 Identities=17% Similarity=0.217 Sum_probs=245.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSA 427 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l 427 (670)
.+.+.|++++||||+++||+|+ ++.|+||++.+... .......+.+|.+. |+++
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~------------------------~~~~~~~~~~h~~~~v~~~ 70 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS------------------------KVPPVVQFTGHGSSVVTTV 70 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC------------------------SSCSEEEECTTTTSCEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC------------------------ccccceEEecCCCceEEEE
Confidence 4577899999999999999997 88999999874200 01356678899999 9999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCCCC--------ceeEEeeCCCccEeEEEEecCCCEEEEEECC----CcEEEEECC
Q 005913 428 SFSP--LGDFILSSSADTTIRLWSTKLN--------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMD 493 (670)
Q Consensus 428 ~~sp--~~~~L~s~s~Dg~I~lwd~~~~--------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~ 493 (670)
+|+| ++++|++|+.||+|++||+.++ .....+..|..+|.+++|+|++.++++++.+ +.|++||
T Consensus 71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-- 148 (615)
T 1pgu_A 71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-- 148 (615)
T ss_dssp EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--
T ss_pred EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--
Confidence 9999 9999999999999999999744 6677888899999999999999999999988 6888887
Q ss_pred CCceeEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCC-CCEEEEEECC
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPD-GRYMASGDED 568 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~-g~~l~sg~~d 568 (670)
.++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.|
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 5678889999999999999999998 899999999999999999999999999999 9999999999 9999999999
Q ss_pred CeEEEEeCCCCeeeEEe-e---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 569 GTIMMWDLASGRCVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~-~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
|.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+.++........ ....
T Consensus 229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~ 296 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL-----------DKQQ 296 (615)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------CTTC
T ss_pred CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC-----------CCCc
Confidence 99999999999999998 6 899999999999 999999999999999999987654321110 0012
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
....+.++.|+ ++.++++|+.+|+
T Consensus 297 ~~~~~~~~~~~-~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRIISLSLDGT 320 (615)
T ss_dssp GGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred ccCceeEEEeC-CCCeEEEEECCCC
Confidence 34678888886 8889999998875
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=282.24 Aligned_cols=259 Identities=22% Similarity=0.357 Sum_probs=229.1
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
..+++|+.... .....+..|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 39 g~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------------------------- 92 (313)
T 3odt_A 39 GTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS------------------------- 92 (313)
T ss_dssp SEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------
T ss_pred CcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------
Confidence 46788876433 3345667788999999999999999999999999999987421
Q ss_pred CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (670)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~ 488 (670)
.......+.+|...|.+++| ++++|++++.||.|++|| .+.....+..|..++.++.|+| ++.++++++.||.|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 12344567789999999999 578999999999999999 6778888999999999999999 999999999999999
Q ss_pred EEECCCCceeEEecc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 489 IWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 489 lwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
+|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+.+|...|++++|+|++ .|++++.
T Consensus 169 i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 244 (313)
T 3odt_A 169 LWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE 244 (313)
T ss_dssp EEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred EEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence 999 4556777776 889999999999998 9999999999999999999999999999999999999999 6899999
Q ss_pred CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
||.|++||+.+++.+..+..|...|++++|+|++. +++++.||.|++||+.++..
T Consensus 245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 99999999999999999999999999999999998 66799999999999987643
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=296.72 Aligned_cols=247 Identities=23% Similarity=0.341 Sum_probs=216.9
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTAR 488 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~ 488 (670)
....+.+|.+.|++++|+|++++|++|+.||+|++|++. +...+..+.+|..+|++++|+++ +.+|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345678999999999999999999999999999999998 55667788899999999999976 99999999999999
Q ss_pred EEECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcC-----
Q 005913 489 IWSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP----- 557 (670)
Q Consensus 489 lwd~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp----- 557 (670)
+||+.+++ .+..+.+|...|.+++|+|+ +++|++++.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999887 77788889999999999999 9999999999999999999873 4556778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCC---CCEEEEEECCCcEEEEeCCCCc
Q 005913 558 --------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 558 --------~g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~---g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
++.+|++|+.||.|++||++++. .+..+.+|...|.+++|+|+ +.+|++++.||.|++||+..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 69999999999999999998764 45677889999999999999 8999999999999999998764
Q ss_pred cccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 623 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.... ..+.....+..+|.+++|+|++.+|++|+.||+
T Consensus 243 ~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 243 GPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp SCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred ccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 2110 122334457789999999999999999999885
No 95
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-32 Score=284.22 Aligned_cols=263 Identities=25% Similarity=0.407 Sum_probs=227.7
Q ss_pred cceecCCCCC----CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 330 ~~~~l~~~~~----ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+++|+... ...+..++.+|...|++++|+|++++|++|+.||.|++|+...
T Consensus 61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~----------------------- 117 (340)
T 4aow_A 61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT----------------------- 117 (340)
T ss_dssp SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc-----------------------
Confidence 4688886432 2455667888999999999999999999999999999999874
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEecCC--CEEEEEE
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASSS 482 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~g--~~l~s~s 482 (670)
.........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+..++|++++ .++++++
T Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 118 -----GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred -----cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 2344455677889999999999999999999999999999865543 3456789999999999854 5789999
Q ss_pred CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 483 ~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 271 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL 271 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999888755 679999999988655
Q ss_pred EEEECCCeEEEEeCCCCeeeEEee---------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 563 ASGDEDGTIMMWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~~~~~~---------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+++.|+.|++||+.++..+..+. +|...|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus 272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 55679999999999887766553 688899999999999999999999999999998874
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=330.09 Aligned_cols=309 Identities=14% Similarity=0.155 Sum_probs=234.6
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+..... +..++ .+.+.|++++|+|++++|++|+.||.|++||+.......... +
T Consensus 78 D~~v~lWd~~~~~-~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~- 138 (902)
T 2oaj_A 78 KDTVYVLSLYSQK-VLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------D- 138 (902)
T ss_dssp TCEEEEEETTTCS-EEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------C-
T ss_pred cCeEEEEECCCCc-EEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------c-
Confidence 4578889865543 23333 467889999999999999999999999999987532110000 0
Q ss_pred CCccce-eeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeCC------------------CccEeE
Q 005913 409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD 468 (670)
Q Consensus 409 ~~~~~~-~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~ 468 (670)
..... ..+.+|.++|++++|+|+ +..|++|+.||+| +||+++++.+..+..| ...|++
T Consensus 139 -~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 139 -NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp -CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred -cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 00000 234679999999999996 4689999999999 9999999888888765 467999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceeEE--ec---cc-------------CCCeeE--------------------
Q 005913 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---GH-------------LSDVDC-------------------- 510 (670)
Q Consensus 469 l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~--~~---~~-------------~~~v~~-------------------- 510 (670)
++|+|+|.+|++|+.||+|++||+++++++.. +. .| ...|.+
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999999999999999999865543221 00 00 001111
Q ss_pred --------------------------------------------------------------------------------
Q 005913 511 -------------------------------------------------------------------------------- 510 (670)
Q Consensus 511 -------------------------------------------------------------------------------- 510 (670)
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence
Q ss_pred ------------------------------E----------------------------------EEcCCCCEEEEEEcC
Q 005913 511 ------------------------------V----------------------------------RWHINCNYIATGSSD 526 (670)
Q Consensus 511 ------------------------------v----------------------------------~~~p~~~~l~tgs~d 526 (670)
+ +|+|++++|++|+.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence 1 224566778888888
Q ss_pred CcEEEEECCCCcEE--EEE----e-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC----------------
Q 005913 527 KTVRLWDVSSGECV--RIF----I-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG---------------- 579 (670)
Q Consensus 527 g~I~iwd~~~~~~~--~~~----~-----~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~---------------- 579 (670)
++|++||+.++... ..+ . +|...|.+++|+|+|++||+|+.||+|++||+.++
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence 88888888776421 111 1 78889999999999999999999999999999766
Q ss_pred -----------------------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc
Q 005913 580 -----------------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630 (670)
Q Consensus 580 -----------------------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 630 (670)
+++..+.+|.+.|++++|||+| +||+|+.|++|+|||+.....+..
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~---- 611 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM---- 611 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE----
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE----
Confidence 2467788999999999999999 999999999999999876543211
Q ss_pred cCCcccccccccC-CCCCCeEEEEEe-----cCC---cEEEEeeCCCC
Q 005913 631 SGTNRLRSLKTLP-TKSTPVYSLQFS-----RRN---LLFAAGALSKT 669 (670)
Q Consensus 631 ~~~~~~~~~~~~~-~~~~~V~~l~fs-----~~~---~~La~gs~dgs 669 (670)
..+..+. .|...|++++|+ ||| .+|++|+.|++
T Consensus 612 ------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 612 ------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp ------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred ------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 0123454 788899999999 885 89999999985
No 97
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-33 Score=299.17 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=218.3
Q ss_pred ccceecCCCCCCcee-EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~-~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+++|+....... .+...+|.+.|++++|+| ++++|++|+.||.|++||+....
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------------- 152 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---------------------- 152 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence 357888877654433 333347889999999999 78999999999999999987410
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCC
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR 485 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg 485 (670)
........+|...|.+++|+|++++|++|+.||.|++||+ ++..+..+.+|...|.+++|+|++. ++++|+.|+
T Consensus 153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 1122223345689999999999999999999999999999 4778889999999999999999998 999999999
Q ss_pred cEEEEECCC----CceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------------
Q 005913 486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------- 547 (670)
Q Consensus 486 ~v~lwd~~~----~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------- 547 (670)
+|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|.
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 999999987 5566666 6999999999999 99999999999999999999988877776553
Q ss_pred ----CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 548 ----~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+.+..++|+|+|++ +|+.||.|++||+.+++++..+.+ |.+.+..++|+|++++|++|+ ||.|+|||+.+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 33445666666666 777899999999999999999987 457788889999999999997 99999999875
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-32 Score=281.80 Aligned_cols=270 Identities=21% Similarity=0.356 Sum_probs=229.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
+++++||+++ +||+|. |++|+|||+.+... .....+.+|...|++++|+|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~--------------------------~~~~~~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI--------------------------LQLLQMEQPGEYISSVAWIKEG 79 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCE--------------------------EEEEECCSTTCCEEEEEECTTS
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCE--------------------------EEEEEecCCCCeEEEEEECCCC
Confidence 5789999886 888875 99999999875211 1222345788899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEEE
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~ 512 (670)
++|++|+.||+|++|++.+++.+..+.+|...+.++. +++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 9999999999999999999999999999998887655 45779999999999999998765 45677889999999999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCE---EEEEECCCeEEEEeCCCCeeeEEe
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~---l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
|+++++++++++.||.|++||+++++. ......+.+.|.+++++|++.. +++++.++.|++||..........
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 999999999999999999999987653 4556678889999999997653 345678899999999988776554
Q ss_pred eCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
.+...+..+.|+|++..+++++ .||.|+|||+.++. .+..+..|..+|++++|+|+|.+||+
T Consensus 238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---------------~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---------------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 4667899999999999887765 79999999998764 35667789999999999999999999
Q ss_pred eeCCCC
Q 005913 664 GALSKT 669 (670)
Q Consensus 664 gs~dgs 669 (670)
|+.||+
T Consensus 302 ~s~D~~ 307 (318)
T 4ggc_A 302 AAADET 307 (318)
T ss_dssp EETTTE
T ss_pred EecCCe
Confidence 999985
No 99
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.8e-32 Score=297.10 Aligned_cols=270 Identities=28% Similarity=0.568 Sum_probs=238.6
Q ss_pred EeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V-~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+.+|.+.| +|+.+ ++++|++|+.||.|++||+.+ ......+.+|.+.|
T Consensus 113 ~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v 162 (445)
T 2ovr_B 113 VLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV 162 (445)
T ss_dssp EEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred EecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence 466777764 66554 689999999999999999875 23456677999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
++++|+ +++|++|+.||+|++||+.+++.+..+.+|...|.++.|+ +.++++|+.||+|++||+.+++.+..+.+|
T Consensus 163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999998 6799999999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.++++|+.||.|++||+.+++++..
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999 7889999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
+.+|...+.++.++ +++|++|+.||.|++||+.++.... .+.....+..+|.+++|+ +.+|++|
T Consensus 315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ------------TLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE------------EECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEE------------EEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 99999999988874 6799999999999999998765321 112222477899999996 5789999
Q ss_pred eCCCC
Q 005913 665 ALSKT 669 (670)
Q Consensus 665 s~dgs 669 (670)
+.||+
T Consensus 379 ~~dg~ 383 (445)
T 2ovr_B 379 SDDGT 383 (445)
T ss_dssp ETTSE
T ss_pred eCCCe
Confidence 99874
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-34 Score=307.80 Aligned_cols=241 Identities=20% Similarity=0.262 Sum_probs=207.4
Q ss_pred eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.+..|.++|++++|+|++++|++|+.||+|++||+.++ ..+..+.+|..+|++++|+|++.+|++|+.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 6778889999999999999999999999999999999999
Q ss_pred CCc---eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc---EEEEEec-CCCCeEEEEEcCCCCEEEEEE
Q 005913 494 RIQ---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIG-HRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 494 ~~~---~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~I~~l~~sp~g~~l~sg~ 566 (670)
++. +...+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ....+.+ |...|.+++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 876 677788999999999999999999999999999999999887 4677777 999999999999999999999
Q ss_pred CCCeEEEEeCC------------------CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc
Q 005913 567 EDGTIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (670)
Q Consensus 567 ~dg~I~iwDl~------------------~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 628 (670)
.||.|++||+. .++++..+ +|.+.|++++|+|++++|++|+.||+|++||+.++...
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---- 240 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP---- 240 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC----
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc----
Confidence 99999999985 35566667 89999999999999999999999999999999886531
Q ss_pred cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
...+..+..|..+|.+++|+|+|.+|++|+.++
T Consensus 241 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 241 -------PRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp -------EEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred -------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 112556778889999999999999999998765
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-33 Score=303.98 Aligned_cols=301 Identities=12% Similarity=0.083 Sum_probs=231.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ccccccCCCCC---CCC--C--CCcccc--CC------------
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQGE---NDT--T--PREDII--GP------------ 407 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~---~~~~~~~~~~~---~~~--~--~~~~~~--~~------------ 407 (670)
.+++|++|++||++|+++ .++.|++|++.+.. ........... ... . ...... ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977766 67899999987654 21111100000 000 0 000000 00
Q ss_pred -----CCCccceeeeecCccCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceeEEee--CCCccEeEEEEecCCCE
Q 005913 408 -----NGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY 477 (670)
Q Consensus 408 -----~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~l~~sp~g~~ 477 (670)
...........+|.+.|++++|+|++++| ++|+.||+|++||+. ++..+..+. .|...|.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 00000111234677899999999999996 899999999999999 888887776 56788999999999999
Q ss_pred EEEEECCCcEEEEECCCCceeE----EecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCC
Q 005913 478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM 549 (670)
Q Consensus 478 l~s~s~dg~v~lwd~~~~~~~~----~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~ 549 (670)
|++|+.+|.+++|++.++.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+.+++++.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998876544 67789999999999999 99999999999999999999998877 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC-------------------------CCcceEEEEEcCCCCEE
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-------------------------HTSCVWTLAYSCEGSLL 604 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~-------------------------h~~~V~sl~~s~~g~~l 604 (670)
|.+++|+ +|++|++|+.||.|++||+.+++++..+.. +...|.+++|+|++++|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999999 999999999999999999999998887763 23578999999999999
Q ss_pred EEEE-CCCcEEEEeC--CCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 605 ASGS-ADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 605 ~sgs-~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
++++ .|+.|+||++ ..... +..+..+..+ .+|.+++|+|++.++++++.+
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~------------l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~ 375 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGD------------LALKQIITFP-YNVISLSAHNDEFQVTLDNKE 375 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTC------------EEEEEEEECS-SCEEEEEEETTEEEEEECCTT
T ss_pred EEEECCCCeEEEEEeccCCCCc------------eeeccEeccC-CceEEEEecCCcEEEEEeccc
Confidence 9999 8999999999 33211 1234445555 789999999976666665543
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.3e-33 Score=301.84 Aligned_cols=264 Identities=25% Similarity=0.440 Sum_probs=227.4
Q ss_pred CceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913 340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (670)
|.........|.+.|++++|+|+ +.+||+|+.+|.|+||++........ ..........+.
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~ 178 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR 178 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence 34445567788999999999997 78999999999999999875211000 111234566788
Q ss_pred cCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-------eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEE
Q 005913 419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~l 489 (670)
+|.+.|++++|+|++. +|++|+.||+|++|++..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 9999999999999998 999999999999999987432 456778999999999999 7889999999999999
Q ss_pred EECCCC---ceeEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCC-EEE
Q 005913 490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA 563 (670)
Q Consensus 490 wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~-~l~ 563 (670)
||+++. +++..+..|...|.+++|+|++. ++++|+.||.|++||+++ +.++..+..|...|.+++|+|++. +|+
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 999987 57788889999999999999987 688999999999999998 567888999999999999999985 799
Q ss_pred EEECCCeEEEEeCCC--------------CeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 005913 564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 564 sg~~dg~I~iwDl~~--------------~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~ 621 (670)
+++.||.|++||+.. ...+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999999999987 356777788999999999999999 9999999999999998753
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.9e-33 Score=288.04 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=217.3
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~ 488 (670)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++.+|++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 35667789999999999999 699999999999999
Q ss_pred EEECCCC---------ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEe-------------
Q 005913 489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI------------- 544 (670)
Q Consensus 489 lwd~~~~---------~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~------------- 544 (670)
+||++.+ +++..+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 557788899999999999999 9999999999999999999887654332
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEE
Q 005913 545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKL 615 (670)
Q Consensus 545 ~h~~~I~~l~~sp~---g~~l~sg~~dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~i 615 (670)
.|...+.+++|+|+ +.++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 99999999999999998887765 67788999999999999998 89999999999999
Q ss_pred EeCCCCccccccccc-------------------------------cCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 616 WDVTTSTKVLKTEEK-------------------------------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 616 wd~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
||+..+......... ........+..+..|..+|.+++|+|++.+|++|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 999875322111000 0011124566677899999999999999999999
Q ss_pred eCCCC
Q 005913 665 ALSKT 669 (670)
Q Consensus 665 s~dgs 669 (670)
+.||+
T Consensus 325 ~~dg~ 329 (351)
T 3f3f_A 325 GDDGK 329 (351)
T ss_dssp ETTSC
T ss_pred cCCCc
Confidence 99985
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-33 Score=295.91 Aligned_cols=254 Identities=12% Similarity=0.108 Sum_probs=202.6
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccc
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGF-----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS 413 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~-----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (670)
+++..+...|.|++++ ++.+++|+ .|+.+++|++........... ...
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------~~~ 125 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------SVD 125 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------EEC
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------eec
Confidence 4556677778888765 55666654 577799998764221110000 000
Q ss_pred eeeeecCccCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 414 YTLYQGHSGPVYSASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~L~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
......+...+.+++|||||++++++ +.|++|+|||+.+++.+..+. |...|.+++|+|+|.++++++.+ .+++|+
T Consensus 126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~ 203 (365)
T 4h5i_A 126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS 203 (365)
T ss_dssp SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence 11123355678999999999987754 478999999999999888876 77789999999999999999854 566777
Q ss_pred CCCCceeEE--ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCE
Q 005913 492 MDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY 561 (670)
Q Consensus 492 ~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~ 561 (670)
..++..+.. ..+|...|.+++|+|+++++++++.|+ .+++||+..+.. ...+.+|..+|++++|+|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 666665533 346888899999999999999999887 688999887654 3457789999999999999999
Q ss_pred EEEEECCCeEEEEeCCCCeeeEEe-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 562 MASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 562 l~sg~~dg~I~iwDl~~~~~~~~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
||+|+.||.|+|||+.+++++..+ .+|...|++++|||||++|+|||.|++|+||++...
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999885 689999999999999999999999999999999654
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.4e-32 Score=287.38 Aligned_cols=284 Identities=12% Similarity=0.143 Sum_probs=214.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+...|.+.|+|++|||||++||+|+.+| ++||++.... .. ...+...+.
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----------------------------~~--~~~~~~~~~ 62 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----------------------------HI--MSQEMRHLS 62 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----------------------------EE--EEEECSCCC
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----------------------------ee--eeeecCCeE
Confidence 4466788999999999999999998775 7899976411 11 111223577
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913 426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (670)
Q Consensus 426 ~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~ 503 (670)
.+++.++++.+ ++++.|++|++||+.+++.+..+. +..+|.++.|+++. ++++ .|+.|++||+.+. +.+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 88899988887 567788999999999999888887 66689999998764 4443 4789999999987 66655544
Q ss_pred cCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCc----------------EEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
....+++++ +++++ |+.||.|++||+.++. ++..+.+|.+.|++++|+|+|++|++|
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 445566777 66666 5789999999999876 267889999999999999999999999
Q ss_pred ECCCe-EEEEeCCCCeeeEEee-C-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc--------CCc
Q 005913 566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS--------GTN 634 (670)
Q Consensus 566 ~~dg~-I~iwDl~~~~~~~~~~-~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------~~~ 634 (670)
+.||+ |++||+.+++++..+. + |...|++++|+|+|++|++|+.|++|+|||+............. ...
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 99998 9999999999999998 5 99999999999999999999999999999998754221110000 000
Q ss_pred ccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
.............+...++|++++.++++|+.||+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~ 328 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM 328 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence 00000011122334577999999999999998874
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=300.70 Aligned_cols=301 Identities=14% Similarity=0.097 Sum_probs=221.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCC---CCC--CccccC-CCCCccceeeeecCccC
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND---TTP--REDIIG-PNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~~~~~~~h~~~ 423 (670)
...+|.+++|||||+++|+++.|++|+ +........ ....... ..+ ...... ......... -.+|...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~---gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~-~~~~~~~ 87 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN---CNSKNLFHVKEFPLEFENKLDFELAQQNGLL-NSQPVCY 87 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS---SBGGGTEEEEEECCCCCCTTTTSCCCSSCSS-TTSCSCC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccceec---CCCccEEEEEECCCCCcceEEEEeCCCceEe-ecCCCCc
Confidence 346899999999999999999999999 643322110 0000000 000 000000 111111111 1156889
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-----cEeEEEEecCCCEEEEEECCCcEEEEECCCCce-
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-----PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP- 497 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~- 497 (670)
|++++|||+|..||+++.||+|++|+... ++..+. |.. .|.+++|||+|++|++|+.||+|++||+.++..
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 99999999999999999999999999654 666666 665 499999999999999999999999999998752
Q ss_pred ------eEEe----cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE---EEEE-ecCCCCeEEEEEcCCCCEEE
Q 005913 498 ------LRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIF-IGHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 498 ------~~~~----~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~---~~~~-~~h~~~I~~l~~sp~g~~l~ 563 (670)
+..+ .+|.+.|.+++|+|+| +++++.|++|++||+.++.. .+.+ .+|...|.+++|+ |+.||
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 5666 6788899999999999 88899999999999988773 3556 4788899999999 68999
Q ss_pred EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE--cCCCCEEEEEECCCcEEEEeCCCCc-----cccccccc---cCC
Q 005913 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTST-----KVLKTEEK---SGT 633 (670)
Q Consensus 564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg~I~iwd~~~~~-----~~~~~~~~---~~~ 633 (670)
+++ +|.|++||+.+++......+|.+.|++++| +|++..|++++.||+ ++|....-. .......+ .-.
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~ 318 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS 318 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence 987 699999999988875444489999999999 999999999999999 999986211 00000000 000
Q ss_pred cccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.....+..+.+ ...|++++|||+|.++|+++.
T Consensus 319 ~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 319 TIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 00011333333 556999999999999998874
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.1e-32 Score=295.90 Aligned_cols=255 Identities=18% Similarity=0.373 Sum_probs=219.0
Q ss_pred eeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCCC-EEEEE
Q 005913 414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS 481 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~ 481 (670)
.....+|.+.|++++|+|+ +.+|++++.||.|++|++.. ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 4556789999999999997 67999999999999999986 567888999999999999999988 99999
Q ss_pred ECCCcEEEEECCCCce-------eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCe
Q 005913 482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI 550 (670)
Q Consensus 482 s~dg~v~lwd~~~~~~-------~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I 550 (670)
+.||+|++|++..+.. ...+.+|...|.+++|+| ++++|++++.||.|++||++++ +.+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987322 466778999999999999 7889999999999999999987 5777888999999
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCcccccc
Q 005913 551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 551 ~~l~~sp~g~-~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
++++|+|++. +|++|+.||.|++||+++ +.++..+.+|.+.|++++|+|++. +|++++.||.|+|||+.........
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999987 788999999999999998 567888999999999999999984 7999999999999999874322111
Q ss_pred ccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913 628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 669 (670)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs 669 (670)
.. ........+..+..|...|.+++|+|++. +|++++.||+
T Consensus 361 ~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 361 ED-AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp HH-HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred cc-cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 00 00111245667778889999999999999 9999999874
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-32 Score=301.07 Aligned_cols=266 Identities=17% Similarity=0.226 Sum_probs=216.7
Q ss_pred ccceecCCCCCCc-eeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 329 ~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+++|+..... .+.+.+.+|.+.|+|++|+| ++++|++|+.||+|+|||+.+...
T Consensus 141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~--------------------- 199 (435)
T 4e54_B 141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL--------------------- 199 (435)
T ss_dssp TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---------------------
T ss_pred CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---------------------
Confidence 4578999876553 45566778999999999998 789999999999999999864110
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCC
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR 485 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg 485 (670)
........+...+.+++|+|++.+|++|+.||+|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|+
T Consensus 200 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 200 -----RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp -----EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred -----eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 1111122344568899999999999999999999999997 456777889999999999999875 788999999
Q ss_pred cEEEEECCCCceeEE---ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC------CeEEEEEc
Q 005913 486 TARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAMS 556 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~I~~l~~s 556 (670)
+|++||+++.+.... ..+|...|.+++|+|+|++|++|+.||.|++||+.++.+...+..|.. .+....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 999999987654433 357899999999999999999999999999999999998888776653 23456788
Q ss_pred CCCCEEEEEE------------CCCeEEEEeCCCCeeeEEee-CCCcceEEE-EEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 557 PDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 557 p~g~~l~sg~------------~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl-~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++..+.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 8888777764 23579999999999988765 688889887 6999999999876 8899999998764
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.8e-32 Score=293.02 Aligned_cols=270 Identities=16% Similarity=0.231 Sum_probs=224.9
Q ss_pred cceecCCCCCCc---eeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 330 NRVHLSSAALPS---VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 330 ~~~~l~~~~~ps---~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+++|+..... ....++.+|.+.|++++|+| ++++||+|+.||.|+||++.......
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~------------------ 118 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL------------------ 118 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS------------------
T ss_pred CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc------------------
Confidence 456677543321 12234667889999999999 99999999999999999987532110
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEE
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSS 482 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s 482 (670)
........+.+|...|++++|+|++ .+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.+|++++
T Consensus 119 ---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 119 ---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp ---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred ---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 0113456788999999999999998 69999999999999999999999888 78999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEe-cccCCC-eeEEEEcCCCCEEEEE---EcCCcEEEEECCCCcE-EEEEe-cCCCCeEEEEE
Q 005913 483 HDRTARIWSMDRIQPLRIM-AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLAM 555 (670)
Q Consensus 483 ~dg~v~lwd~~~~~~~~~~-~~~~~~-v~~v~~~p~~~~l~tg---s~dg~I~iwd~~~~~~-~~~~~-~h~~~I~~l~~ 555 (670)
.||.|++||+++++.+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||+++++. +.... .|...+.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 788776 8999999999999999 7899999999998764 33332 57788999999
Q ss_pred cCCCCEEEE-EECCCeEEEEeCCCCee-eEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 556 SPDGRYMAS-GDEDGTIMMWDLASGRC-VTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 556 sp~g~~l~s-g~~dg~I~iwDl~~~~~-~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+|++++|++ |+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999999975 45799999999998874 444443 5689999999999998775 57799999998754
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-31 Score=291.03 Aligned_cols=254 Identities=26% Similarity=0.560 Sum_probs=222.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
...+++|+.... .+..++.+|.+.|+|++| ++++|++|+.||.|++||+.+
T Consensus 152 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-------------------------- 202 (435)
T 1p22_A 152 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-------------------------- 202 (435)
T ss_dssp SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred CCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence 346788875443 345567789999999999 789999999999999999875
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
......+.+|...|.+++|+ +..+++|+.||+|++||+.++... ..+.+|...|.+++| ++.++++|+.||
T Consensus 203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 23456677899999999997 469999999999999999987765 677889999999999 688999999999
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
.|++||+++++.+..+.+|...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++|
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 9999999999999999999999999999 4689999999999999999999999999999999999999 78899999
Q ss_pred ECCCeEEEEeCCCCe---------eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~---------~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+.||.|++||+.++. ++..+.+|.+.|++++| ++.+|++|+.||+|++||+.....
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999999997765 78889999999999999 788999999999999999987643
No 111
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=297.16 Aligned_cols=255 Identities=12% Similarity=0.220 Sum_probs=208.5
Q ss_pred ceeee-ecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913 413 SYTLY-QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL---NA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 413 ~~~~~-~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~---~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
....+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ +|..+|.+++|+|++.+|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 44555 78999999999999 999999999999999999876 32 33444 489999999999999999999999
Q ss_pred CcEEEEECC---CCceeEEecc------------cCCCeeEEE--EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--
Q 005913 485 RTARIWSMD---RIQPLRIMAG------------HLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-- 545 (670)
Q Consensus 485 g~v~lwd~~---~~~~~~~~~~------------~~~~v~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-- 545 (670)
|+|++||++ .++....+.+ +...+.++. +++++++|++|+.||.|++||+++++++..+.+
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999995 4544443332 445667776 568899999999999999999999999999988
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcC----CCCEEEEEECCCcEEEEeCCC
Q 005913 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSC----EGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~----~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
|.+.|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|++++|+| ++.+|++|+.||+|++||+.+
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 88999999999999999999999999999999999999886 7888999996654 688999999999999999998
Q ss_pred CccccccccccCCcccc---------cccccCC--CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 621 STKVLKTEEKSGTNRLR---------SLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 621 ~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
+................ .-..+.. +..+|.+++|+ ++.+|++|+.||+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 76544332211100000 0012233 77889999999 8899999998874
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-32 Score=286.53 Aligned_cols=230 Identities=14% Similarity=0.094 Sum_probs=190.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEE
Q 005913 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS 438 (670)
Q Consensus 359 fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s 438 (670)
+.+++.+|++|+.||.|++||+.+.. ....+. ...|.++.|+|+ +++
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------~~~~~~--~~~v~~~~~~~~---~~s 90 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSK----------------------------TITTIT--TPNPRTGGEHPA---IIS 90 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSS----------------------------CEEEEE--EECCCTTCCCCS---EEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCc----------------------------EEEEEe--cCCceeeeeCCc---eEE
Confidence 44678999999999999999987522 112222 467778888887 999
Q ss_pred EeCCCeEEEEeCC---------CCceeEEee-CCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEec-ccC
Q 005913 439 SSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GHL 505 (670)
Q Consensus 439 ~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~ 505 (670)
++.|++|++|+.. ++..+..+. +|..+|.+++|+| ++.++++|+.||+|++||+++++...... .|.
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 9999999999765 444444444 6778999999999 99999999999999999999998877664 455
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE-EEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~-h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
..|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.++|++++|+|+|.+|++++ |+.|++||+++++.+.
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 58999999999999999999999999999999988 77888 999999999999999999999 5599999999987765
Q ss_pred EeeC---CCcceE--EEEEcCCCCEEEEEEC-CCcEEEEeCCCCc
Q 005913 584 PLMG---HTSCVW--TLAYSCEGSLLASGSA-DCTVKLWDVTTST 622 (670)
Q Consensus 584 ~~~~---h~~~V~--sl~~s~~g~~l~sgs~-Dg~I~iwd~~~~~ 622 (670)
.+.. |...+. +++|+|+|++|++++. |+.|+||++....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 5543 444444 6999999999999998 9999999997654
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.2e-31 Score=275.08 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=221.3
Q ss_pred ccceecCCCCCCc--eeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCCccccccCCCCCCCCCCCccc
Q 005913 329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI 404 (670)
Q Consensus 329 ~~~~~l~~~~~ps--~~~~t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (670)
...+++|+..... ........|...|++++|+|+++ +|++|+.||.|++|++ ...
T Consensus 32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------------------- 90 (342)
T 1yfq_A 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------------------- 90 (342)
T ss_dssp TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence 3567777654333 33455668889999999999999 9999999999999998 641
Q ss_pred cCCCCCccceeeeec--CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeeCCCccEeEEEEec
Q 005913 405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP 473 (670)
Q Consensus 405 ~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~l~~sp 473 (670)
....+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ ++.+..+. |...|.+++|+|
T Consensus 91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 2245667 999999999999 99999999999999999987 66666565 888999999998
Q ss_pred CCCEEEEEECCCcEEEEECCC-Cc--eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC------cEEEEE
Q 005913 474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF 543 (670)
Q Consensus 474 ~g~~l~s~s~dg~v~lwd~~~-~~--~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~------~~~~~~ 543 (670)
++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++|+.||.|++||+..+ +....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999988 54 3345557888999999999 9999999999999999999887 778888
Q ss_pred ecCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEECCCc-
Q 005913 544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCT- 612 (670)
Q Consensus 544 ~~h~~---------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs~Dg~- 612 (670)
..|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ...|++++ |++++|++|+.||+
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 88865 9999999999999999999999999999999999999998 99999999 99999999999998
Q ss_pred EEEEeC
Q 005913 613 VKLWDV 618 (670)
Q Consensus 613 I~iwd~ 618 (670)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555553
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-31 Score=309.85 Aligned_cols=245 Identities=22% Similarity=0.340 Sum_probs=214.6
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEE
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW 490 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lw 490 (670)
..+.+|.++|++++|+|++++|++|+.||+|++||+. ++..+..+.+|..+|++++|+|+ +.+|++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4567999999999999999999999999999999998 45667788999999999999987 9999999999999999
Q ss_pred ECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcC-------
Q 005913 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP------- 557 (670)
Q Consensus 491 d~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp------- 557 (670)
|+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 67788899999999999999 999999999999999999887 34456778999999999999
Q ss_pred ------CCCEEEEEECCCeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCC---CCEEEEEECCCcEEEEeCCCCccc
Q 005913 558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 558 ------~g~~l~sg~~dg~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~---g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
++.+|++|+.||.|++||++++ ..+..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+..+...
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999877 566778899999999999999 899999999999999999876421
Q ss_pred cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
. ...+.....+...|++++|+|+|.++++|+.||+
T Consensus 243 ~----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 243 W----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp C----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred c----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 1 1123344567889999999999999999999985
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=6.3e-31 Score=283.11 Aligned_cols=236 Identities=17% Similarity=0.148 Sum_probs=173.7
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----EeeCCCccEeEEEEec--------CCCEEEEEECCC
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-----CYKGHNYPVWDVQFNP--------QGHYFASSSHDR 485 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-----~~~~h~~~V~~l~~sp--------~g~~l~s~s~dg 485 (670)
.|.+.+....+++++.+|++|+.|++|+|||+.++.... .+.+|...|++++|+| ++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 445555555666677889999999999999999876543 3568999999999998 789999999999
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEE---------------------
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF--------------------- 543 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~--------------------- 543 (670)
+|++||+.++.++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++.....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999888888888899999999999987 58999999999999999987654322
Q ss_pred ----ecCCCCeEEEEEc-CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEc------------------C-
Q 005913 544 ----IGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS------------------C- 599 (670)
Q Consensus 544 ----~~h~~~I~~l~~s-p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s------------------~- 599 (670)
.+|...+.++.|+ |+|+.|++++.|+.+++||+.++.....+..|...+..+.+. |
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 3577788999987 799999999999999999999887777666665554444333 2
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913 600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 600 -~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
++.++++|+.||+|++||+.++.. +.....+..+|.+++|+|+|++||+|+.+|.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~---------------~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDS---------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTC---------------CEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcE---------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 344677888999999999987643 2334456779999999999999999998863
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=8.5e-31 Score=285.34 Aligned_cols=247 Identities=13% Similarity=0.276 Sum_probs=197.1
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeeCCC------------ccEeEEEEecCC
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHN------------YPVWDVQFNPQG 475 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~------------~~V~~l~~sp~g 475 (670)
.|.+.|++++|+|++++|++|+.||.|++|++.++. ....+.+|. .+|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467999999999999999999999999999999776 477888998 889999999998
Q ss_pred --CEEEEEECCCcEEEEECCCCcee---------------------------------------EE-ecccCCCeeEEEE
Q 005913 476 --HYFASSSHDRTARIWSMDRIQPL---------------------------------------RI-MAGHLSDVDCVRW 513 (670)
Q Consensus 476 --~~l~s~s~dg~v~lwd~~~~~~~---------------------------------------~~-~~~~~~~v~~v~~ 513 (670)
.+|++++.|++|++||+..+... +. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999998763321 12 3689999999999
Q ss_pred cCCCCEEEEEEcCCcEEEEECCC-CcEEEE-------EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCee---
Q 005913 514 HINCNYIATGSSDKTVRLWDVSS-GECVRI-------FIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC--- 581 (670)
Q Consensus 514 ~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~--- 581 (670)
+|++++|++| .|+.|++||+++ ++.+.. +.+|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999999 799999999994 444442 45899999999999998 9999999999999999999887
Q ss_pred -eEEeeCCCc------------ceEEEEEcCCCCEEEEEECCCcEEEEeCCC-CccccccccccCCcccccccc-c-CCC
Q 005913 582 -VTPLMGHTS------------CVWTLAYSCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKT-L-PTK 645 (670)
Q Consensus 582 -~~~~~~h~~------------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~ 645 (670)
+..+.+|.. .|.+++|+|+|++|++++. |.|++||+.. +............. ..+.. + ...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 341 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR--SKLCSLYENDC 341 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT--TTHHHHHHTSG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc--ccccccccccc
Confidence 778888876 8999999999999999999 9999999987 43221111100000 00000 0 000
Q ss_pred CCCeEEEEEecCCcEEEEeeCCCC
Q 005913 646 STPVYSLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~gs~dgs 669 (670)
...++.++|+|++.+|++|+.||+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTE
T ss_pred cccceEEEECCCCCEEEEeccCCE
Confidence 012446999999999999999984
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=270.87 Aligned_cols=247 Identities=21% Similarity=0.309 Sum_probs=207.3
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 349 ~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.|...|++++|+| ++.+|++|+.||.|++|++... .... ...+...+.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------------~~~~-~~~~~~~~~~~ 147 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------------QTAD-VFNFEETVYSH 147 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------------EEEE-EEECSSCEEEE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------------ccce-eccCCCceeee
Confidence 3788999999999 7889999999999999998752 1222 22377889999
Q ss_pred EEcCCC---CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCc-eeEEe-
Q 005913 428 SFSPLG---DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQ-PLRIM- 501 (670)
Q Consensus 428 ~~sp~~---~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~-~~~~~- 501 (670)
.|+|.+ .++++++.||.|++||+.++..+..+.+|..+|.+++|+|++. .|++|+.||.|++||+++.. ++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 999854 4999999999999999999999999999999999999999998 58999999999999998765 44444
Q ss_pred --------------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEE
Q 005913 502 --------------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYM 562 (670)
Q Consensus 502 --------------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l 562 (670)
.+|...|.+++|+|++++|++++.||.|++||+.+++....+..+. ..+........+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 5788999999999999999999999999999999988765443321 122222333445667
Q ss_pred EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
++++.++.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||.|++||+.+....
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 77788999999999999999999999999999999999999999999999999999987653
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.9e-29 Score=271.42 Aligned_cols=284 Identities=12% Similarity=0.061 Sum_probs=233.3
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
..........+.+++|+|++.++++++.++.|++||+.+...... .....+.+|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~ 171 (433)
T 3bws_A 115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF 171 (433)
T ss_dssp EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence 334444556678999999888888888899999999875321110 011134578999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEec
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~ 502 (670)
|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++ .|+.|++||+++++.+..+.
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999886555 79999999999998888877
Q ss_pred ccCCCeeEEEEcCCCCEEEEEE--------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEE
Q 005913 503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM 573 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs--------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l-~sg~~dg~I~i 573 (670)
.+ ..+.+++|+|+++++++++ .||.|++||+.+++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus 252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 54 5699999999999999988 4889999999999887765 456689999999999755 66689999999
Q ss_pred EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCccccccccccCCccccc
Q 005913 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---------------DCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.++...
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-------------- 394 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-------------- 394 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE--------------
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE--------------
Confidence 9999998887775 6778999999999999988886 579999999876432
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeC-CCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGAL-SKT 669 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~-dgs 669 (670)
..+.. ...+.+++|+|+|.+|++++. |++
T Consensus 395 -~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 395 -EFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp -EEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred -EEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence 22222 346899999999999988765 653
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=8.5e-31 Score=282.13 Aligned_cols=246 Identities=14% Similarity=0.130 Sum_probs=182.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
+...+....+++++.+||+|+.|++|+||++....... ......+.||.+.|++++|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~~ 144 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDIDI 144 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEEE
Confidence 34445566677788999999999999999987522110 1223456799999999999
Q ss_pred cC--------CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEE
Q 005913 430 SP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRI 500 (670)
Q Consensus 430 sp--------~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~ 500 (670)
+| ++++|++|+.|++|+|||+.++..+....+|..+|.+++|+|++ .+|++|+.||+|++||+.+++....
T Consensus 145 ~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 145 ADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 98 78899999999999999999888888888899999999999987 4799999999999999987654322
Q ss_pred -------------------------ecccCCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEE
Q 005913 501 -------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554 (670)
Q Consensus 501 -------------------------~~~~~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 554 (670)
..+|...+.++.|+ |+++.|++++.|+++++||+.+++....+..|...+..+.
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 23677889999987 8999999999999999999998877766666655544443
Q ss_pred Ec------------------C--CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 555 MS------------------P--DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 555 ~s------------------p--~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
+. | ++.++++|+.||.|++||+.++.++..+.+|..+|++++|+|+|++||+++.+| +.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 33 3 344677888999999999999999988889999999999999999999998766 66
Q ss_pred EEeCC
Q 005913 615 LWDVT 619 (670)
Q Consensus 615 iwd~~ 619 (670)
+|.+.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 66653
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=274.43 Aligned_cols=246 Identities=14% Similarity=0.085 Sum_probs=208.3
Q ss_pred ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecCccCE
Q 005913 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSGPV 424 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V 424 (670)
.++.+.|+|++|+|++++| |+|+.||.|+||++.... ......+ ..|...|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--------------------------~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--------------------------KNVLKLRKRFCFSKRP 152 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--------------------------SSCEEEEEEEECSSCE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--------------------------CceeeeeecccCCCCc
Confidence 4567789999999999996 899999999999987200 1122333 3677999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCce
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
++++|+|++++|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|++|++||+.+++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999999999999999999999998776544 77889999999999999 99999999999999999999988
Q ss_pred eEE-ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-------------------------CCCeE
Q 005913 498 LRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------------------RSMIL 551 (670)
Q Consensus 498 ~~~-~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~I~ 551 (670)
+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+++++++..+..+ ...|.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 877 55899999999999 9999999999999999999999998887632 35699
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEeC--CCC---eeeEEeeCCCcceEEEEEcCCCCEEEEEEC------CCcEEEEeCC
Q 005913 552 SLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVT 619 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~-~dg~I~iwDl--~~~---~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~ 619 (670)
+++|+|++++|++++ .|+.|++||+ .++ ..+..+..| +.|.+++|+|++.++++++. +..|.+|.+.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999999999999 8999999999 666 677778888 88999999996433433332 5568999876
Q ss_pred CC
Q 005913 620 TS 621 (670)
Q Consensus 620 ~~ 621 (670)
..
T Consensus 391 ~~ 392 (450)
T 2vdu_B 391 LN 392 (450)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=264.40 Aligned_cols=260 Identities=16% Similarity=0.173 Sum_probs=218.4
Q ss_pred ccceecCCCCCC-ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 329 ~~~~~l~~~~~p-s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
...+++|+.... ......+..|.+.|++++|+|++++|++|+.||.|++||+...
T Consensus 63 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------------------ 118 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------------------------ 118 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------------------
T ss_pred CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------------------------
Confidence 356888887653 3333677889999999999999999999999999999998751
Q ss_pred CCCccceeeeecCccCEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913 408 NGRKRSYTLYQGHSGPVYSASF--SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~--sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
......+|...|++++| +|++.+|++++.||+|++||+.+++.+..+..+. .+.++.+. +..+++++.++
T Consensus 119 -----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 190 (368)
T 3mmy_A 119 -----QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAER 190 (368)
T ss_dssp -----EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGG
T ss_pred -----CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCC
Confidence 22335679999999999 8999999999999999999999999998888765 56666665 45889999999
Q ss_pred cEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCE----EEEEEcCCcEEEEECCCC---cEEEEEecCCC--------
Q 005913 486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNY----IATGSSDKTVRLWDVSSG---ECVRIFIGHRS-------- 548 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~----l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~-------- 548 (670)
.+++|+++......... .+...+.++++.++... +++|+.||.|++||++.. ..+..+.+|..
T Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 99999998765433322 34456677777665554 999999999999999987 56777777776
Q ss_pred ----CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 549 ----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+|++++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|.+|++|+.|+..+.|++..
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999998766666544
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=9.5e-27 Score=249.01 Aligned_cols=261 Identities=14% Similarity=0.129 Sum_probs=213.7
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..+++|+..... ......++..+.+++|+|+++++ ++++.|+.|++||+.+.
T Consensus 12 ~~v~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------------------------- 64 (391)
T 1l0q_A 12 DNISVIDVTSNK--VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------------------------- 64 (391)
T ss_dssp TEEEEEETTTTE--EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred CEEEEEECCCCe--EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-------------------------
Confidence 467777654332 22334455679999999999987 67778999999998641
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCc
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRT 486 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~ 486 (670)
.....+..| ..+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.
T Consensus 65 ---~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 65 ---NVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp ---EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred ---eEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCE
Confidence 223333334 3899999999999876 45567999999999998888877654 68999999999987 67778999
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg 565 (670)
|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|+++
T Consensus 140 v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEE
Confidence 999999999988888765 567999999999988 567788999999999998887775 45679999999999999988
Q ss_pred E---CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEE-EEEECCCcEEEEeCCCCcccc
Q 005913 566 D---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKVL 625 (670)
Q Consensus 566 ~---~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~~~~~ 625 (670)
+ .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.++....
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 8 68999999999999988888765 47899999999877 677889999999999876543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-29 Score=260.98 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=184.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC---------CCcee
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---------RIQPL 498 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~---------~~~~~ 498 (670)
.+.+++..|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+.+ +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999998887776 467888899988 9999999999999765 44444
Q ss_pred EEec-ccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 499 RIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 499 ~~~~-~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
..+. +|...|.+++|+| +++++++|+.||+|++||+++++++.... .|...|.+++|+|+|.+|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4444 6778899999999 99999999999999999999999977764 445589999999999999999999999999
Q ss_pred eCCCCeee-EEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe--E
Q 005913 575 DLASGRCV-TPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV--Y 650 (670)
Q Consensus 575 Dl~~~~~~-~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~ 650 (670)
|+++++.+ ..+.. |.++|++++|+|+|.+|++++ |++|++||+.+...... +..+..+..++ .
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------------~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------------YPTYTIPEFKTGTV 264 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------------SCCCBC-----CCE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------------ecccccccccccce
Confidence 99999888 78887 999999999999999999999 55999999988653211 12222233333 4
Q ss_pred EEEEecCCcEEEEeeC-CC
Q 005913 651 SLQFSRRNLLFAAGAL-SK 668 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~-dg 668 (670)
+++|+|+|.+|++|+. ++
T Consensus 265 ~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp EEEECTTSSEEEEEETTTT
T ss_pred EEEECCCCCEEEEecCCCC
Confidence 7999999999999887 54
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.1e-28 Score=250.57 Aligned_cols=263 Identities=16% Similarity=0.129 Sum_probs=198.4
Q ss_pred cccceecCCCCCCc--eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcE-EEEECCCCCccccccCCCCCCCCCCCcc
Q 005913 328 LRNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSL-KVWDMAKLGQQAVSSGLQGENDTTPRED 403 (670)
Q Consensus 328 ~~~~~~l~~~~~ps--~~~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I-~Iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (670)
....+.||...-.. .+.|++..|..+|..+.|+||. +++.++-.+=.+ .|+.+.-
T Consensus 61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~--------------------- 119 (356)
T 2w18_A 61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC--------------------- 119 (356)
T ss_dssp ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC---------------------
T ss_pred ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE---------------------
Confidence 34567888766542 6788999999999999999974 444444332222 2333221
Q ss_pred ccCCC-CCccceeeeecCccCEEEEEEcCCCCEEEEEe--CCCeEEEEeC-CCCceeEEeeCCCccEeEEEEec---CCC
Q 005913 404 IIGPN-GRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNP---QGH 476 (670)
Q Consensus 404 ~~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s--~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp---~g~ 476 (670)
+++ ........-.+|...|.++ ++++.+.+++ .|+.|++|++ .+++.+..+.+|...+..++|++ ++.
T Consensus 120 --spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 120 --SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp --------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred --CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 011 0112223334566666654 5566555544 5999999999 45778888889999999999999 789
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecccC---CCeeEEEEcCCCCEE------------EEEEcCCcEEEEECCCCcEEE
Q 005913 477 YFASSSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECVR 541 (670)
Q Consensus 477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~l------------~tgs~dg~I~iwd~~~~~~~~ 541 (670)
+|++|+.|++|++||+.+++.++.+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+.
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 99999999999999999999999998654 357788999999887 567889999999999999887
Q ss_pred EE-----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceE-EEEEcCCCCEEEEEECCCcEEE
Q 005913 542 IF-----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 542 ~~-----~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~-sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
.+ .+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|...+. +++|||+|++|++|+.|++|+|
T Consensus 275 v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred EEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 66 3666665555554 88999999999999999999999999999987655 5899999999999999999999
Q ss_pred EeC
Q 005913 616 WDV 618 (670)
Q Consensus 616 wd~ 618 (670)
||+
T Consensus 353 Wd~ 355 (356)
T 2w18_A 353 YHY 355 (356)
T ss_dssp EEE
T ss_pred ecC
Confidence 995
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8e-27 Score=249.57 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=211.1
Q ss_pred CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE-EEEeCC
Q 005913 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD 442 (670)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~D 442 (670)
.++++++.|+.|++||+.+ ......+.+| ..+.+++|+|++++| ++++.|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d 53 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHS 53 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecC-CCcceEEECCCCCEEEEECCCC
Confidence 4678899999999999875 2233445555 458999999999977 677789
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI- 520 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l- 520 (670)
++|++||+.+++.+..+..+. .+.+++|+|++.++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++
T Consensus 54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999999888888666 899999999999886555 6799999999999888887754 578999999999988
Q ss_pred EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (670)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l-~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~ 599 (670)
++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~ 209 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP 209 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC
Confidence 67778999999999999999888765 457999999999987 567788999999999998887775 456789999999
Q ss_pred CCCEEEEEE---CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE-EEeeCCC
Q 005913 600 EGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF-AAGALSK 668 (670)
Q Consensus 600 ~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L-a~gs~dg 668 (670)
++++|++++ .++.|++||+.++.. +..+..+ ..+.+++|+|+|..| ++++.|+
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~---------------~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTGTNKI---------------TARIPVG-PDPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEE---------------EEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred CCCEEEEEecCcCCCcEEEEECCCCeE---------------EEEEecC-CCccEEEEccCCCEEEEEcCCCC
Confidence 999999888 689999999987643 2233333 357899999999877 5656665
No 126
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-28 Score=262.61 Aligned_cols=223 Identities=9% Similarity=0.044 Sum_probs=184.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc-----C
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P 423 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~ 423 (670)
.+...|.+++|||||.+||+++.||.|+||+... ....+. |.. .
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence 3367899999999999999999999999999542 223334 444 5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEe----eCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
|.+++|||+|++|++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++.|++|++||+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~ 209 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV 209 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence 99999999999999999999999999998753 4665 5677899999999999 889999999999999
Q ss_pred CCCce---eEEe-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE--cCCCCEEEEEE
Q 005913 493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD 566 (670)
Q Consensus 493 ~~~~~---~~~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~--sp~g~~l~sg~ 566 (670)
..... .+.+ .+|...|.+++|+ +++|++++ +++|++||+.+++......+|.+.|..++| +|++..|++++
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 88773 3456 4788999999999 68999887 699999999988875555589999999999 99999999999
Q ss_pred CCCeEEEEeCCC-----------------------CeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913 567 EDGTIMMWDLAS-----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 567 ~dg~I~iwDl~~-----------------------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~ 609 (670)
.||. ++|.... +..+..+. +...|++++|||||..+|+++.
T Consensus 287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 9999 9998742 11122222 2456999999999999998873
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.7e-26 Score=249.03 Aligned_cols=259 Identities=12% Similarity=0.117 Sum_probs=216.0
Q ss_pred cceecCCCCCCceeEE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913 330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~----t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (670)
..+++|+......... .+..|.+.|++++|++++.++++++.|+.|++|++.+
T Consensus 144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~----------------------- 200 (433)
T 3bws_A 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT----------------------- 200 (433)
T ss_dssp SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence 3577777554433221 2336777899999999999999999999999999864
Q ss_pred CCCCCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--
Q 005913 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-- 482 (670)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-- 482 (670)
......+..|...+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|+|.++++++
T Consensus 201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEE
T ss_pred -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECC
Confidence 224455667889999999999999885 55579999999999988887777654 589999999999999988
Q ss_pred ------CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913 483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (670)
Q Consensus 483 ------~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 555 (670)
.|+.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 4889999999998877665 456689999999999765 556889999999999999888775 6778999999
Q ss_pred cCCCCEEEEEEC---------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913 556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT 619 (670)
Q Consensus 556 sp~g~~l~sg~~---------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~ 619 (670)
+|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |++|++|++.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 999999998876 57999999999999888876 457899999999999998875 9999999986
Q ss_pred C
Q 005913 620 T 620 (670)
Q Consensus 620 ~ 620 (670)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 128
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=3.6e-26 Score=242.44 Aligned_cols=234 Identities=17% Similarity=0.172 Sum_probs=187.0
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
.++.+++++++++.++ +|+.|+.|+|||+.+. .....+. |...|.+++|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~----------------------------~~~~~~~-~~~~v~~v~~~ 109 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK----------------------------QDVSRIK-VDAPVKDLFLS 109 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT----------------------------EEEEEEE-CSSCEEEEEEC
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC----------------------------cEEEEEE-CCCceEEEEEc
Confidence 3688999999988885 6778899999998752 2223333 66799999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCCCEEEE--EECCCcEEEEECCCCc-----------
Q 005913 431 PLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQ----------- 496 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s--~s~dg~v~lwd~~~~~----------- 496 (670)
++. ++++ .|+.|++||+.+. +.+..+.. +...+++++ .++++ |+.||.|++||+.++.
T Consensus 110 ~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 110 REF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp SSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred CCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 753 4444 4789999999987 66555554 455566777 56666 5789999999998765
Q ss_pred ----e-eEEecccCCCeeEEEEcCCCCEEEEEEcCCc-EEEEECCCCcEEEEEe-c-CCCCeEEEEEcCCCCEEEEEECC
Q 005913 497 ----P-LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFI-G-HRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 497 ----~-~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~-I~iwd~~~~~~~~~~~-~-h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
+ +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+. + |...|.+++|+|+|++|++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 2 7888999999999999999999999999998 9999999999999998 5 99999999999999999999999
Q ss_pred CeEEEEeCCCCeee--EEee---------------------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 569 GTIMMWDLASGRCV--TPLM---------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 569 g~I~iwDl~~~~~~--~~~~---------------------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
|.|++||+..+... ..+. .+......++|+++|+.|++++.||.+++|++..+.
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999765311 1110 112234679999999999999999999999986643
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.6e-25 Score=230.44 Aligned_cols=270 Identities=11% Similarity=0.111 Sum_probs=186.7
Q ss_pred EEEEEEcCCCC---EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 354 LNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 354 V~~l~fs~d~~---~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
+.++.|-.-|- .++++ ....|++|+..... ..+....+.+|..+|..+.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~-~~~~v~lw~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~ 95 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITA-CEDVVSLWKALDAW-------------------------QWEKLYTWHFAEVPVLQIVPV 95 (356)
T ss_dssp EEEEEEC----CEEEEEEE-ESSEEEEEEESSSS-------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred EeeeeeccCCCCccEEEEe-ccceEEEcccCCCc-------------------------cceeeEEEeccCceeEEEEEc
Confidence 66777754332 34455 56789999987521 124566677777777777777
Q ss_pred CCCCEEEE-EeCC---CeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEEC-CCCceeE
Q 005913 431 PLGDFILS-SSAD---TTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSM-DRIQPLR 499 (670)
Q Consensus 431 p~~~~L~s-~s~D---g~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~-~~~~~~~ 499 (670)
||..-|+. +-.+ +.|+..-+... .......+|...|+++ ++++.+.+++ .|+.|++|++ .+++.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~ 172 (356)
T 2w18_A 96 PDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE 172 (356)
T ss_dssp TTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred CcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee
Confidence 75432221 1111 01111111111 1222223344445554 4565555543 6899999998 4577788
Q ss_pred EecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCCCCEE-----------
Q 005913 500 IMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYM----------- 562 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l----------- 562 (670)
.+.+|...+..++|+| ++.+|++|+.|++|+|||+.+|++++++.+|.. .+.+++|+|+|.++
T Consensus 173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~ 252 (356)
T 2w18_A 173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES 252 (356)
T ss_dssp EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence 8889999999999999 789999999999999999999999999987543 57788999999986
Q ss_pred -EEEECCCeEEEEeCCCCeeeEEe-----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913 563 -ASGDEDGTIMMWDLASGRCVTPL-----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL 636 (670)
Q Consensus 563 -~sg~~dg~I~iwDl~~~~~~~~~-----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 636 (670)
++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++|+.||+|+|||+.+++.
T Consensus 253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~------------- 317 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC------------- 317 (356)
T ss_dssp -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE-------------
T ss_pred eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE-------------
Confidence 56889999999999999987765 3676665555544 88999999999999999988753
Q ss_pred ccccccCCCCCCeE-EEEEecCCcEEEEeeCCCC
Q 005913 637 RSLKTLPTKSTPVY-SLQFSRRNLLFAAGALSKT 669 (670)
Q Consensus 637 ~~~~~~~~~~~~V~-~l~fs~~~~~La~gs~dgs 669 (670)
+.++..|...+. .++|+|+|.+|++|+.|++
T Consensus 318 --l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 318 --TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp --EEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred --EEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 456666766554 6899999999999999987
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.4e-26 Score=245.88 Aligned_cols=278 Identities=17% Similarity=0.118 Sum_probs=220.7
Q ss_pred ceecCCC--CCCcee-EEEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCCccc
Q 005913 331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA 387 (670)
Q Consensus 331 ~~~l~~~--~~ps~~-~~t~~~~~~~V~~l~fs~--------------d~~~La~g~~d------g~I~Iwdl~~~~~~~ 387 (670)
.+++|+. ...... -.++..+...+.++++++ .+..++.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----- 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----- 168 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence 6788887 444321 244667777777777764 25666665554 7999999863
Q ss_pred cccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeeCCCc
Q 005913 388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY 464 (670)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~ 464 (670)
.....+.+|...|.+++|+|+|+.|++++.++ .|++||+.+++.. .+..|..
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~ 223 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR 223 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence 13355677899999999999999999999875 9999999988765 4667888
Q ss_pred cEeEEEEecCCCEEE-EEECCCc--EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCc
Q 005913 465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGE 538 (670)
Q Consensus 465 ~V~~l~~sp~g~~l~-s~s~dg~--v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~ 538 (670)
.+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|++|++++.+ + .|++||+.+++
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 999999999999888 6666654 99999988765 5677788899999999999999988864 4 68888998887
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---c
Q 005913 539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---T 612 (670)
Q Consensus 539 ~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~ 612 (670)
.. .+..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|++|++++.++ .
T Consensus 303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence 54 455677789999999999999988764 58999999988764 455554 899999999999999998877 7
Q ss_pred EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913 613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 658 (670)
Q Consensus 613 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~ 658 (670)
|.+||+.... ...+..+...|.+++|+|..
T Consensus 380 l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 380 LNLVSTDGRF----------------KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTSCC----------------EEECCCSSSEEEEEEECCCC
T ss_pred EEEEECCCCc----------------EEEeeCCCCCCcCCcccccc
Confidence 9999987532 34667788899999999964
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.9e-25 Score=242.21 Aligned_cols=270 Identities=14% Similarity=0.105 Sum_probs=210.7
Q ss_pred CCEEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 352 NGLNCASISQDGS-LVAGGF----SDS----SLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 352 ~~V~~l~fs~d~~-~La~g~----~dg----~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
..+...+|++.|. ++++|+ .+| .|+|||+ .+... .....+.+|
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~--------------------------~~~~~~~~~ 116 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV--------------------------LAQNSYKVN 116 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE--------------------------EEEEEEEEC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE--------------------------EeeeEEEcC
Confidence 3567777877764 566775 567 8999998 54211 112346677
Q ss_pred ccCEEEEEEcC--------------CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE
Q 005913 421 SGPVYSASFSP--------------LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS 480 (670)
Q Consensus 421 ~~~V~~l~~sp--------------~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s 480 (670)
...+..+++++ .+..++.++.+ ++|++||+. +.....+.+|...+.+++|+|+|++|++
T Consensus 117 ~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~ 195 (415)
T 2hqs_A 117 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAY 195 (415)
T ss_dssp GGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEE
Confidence 77777776664 25666666654 799999998 4566777889999999999999999999
Q ss_pred EECCC---cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEE-EEEcCCc--EEEEECCCCcEEEEEecCCCCeEEEE
Q 005913 481 SSHDR---TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKT--VRLWDVSSGECVRIFIGHRSMILSLA 554 (670)
Q Consensus 481 ~s~dg---~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-tgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~ 554 (670)
++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|...+.+++
T Consensus 196 ~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 196 VTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred EEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 99885 9999999988775 4566888999999999999888 5655554 99999998876 45677888999999
Q ss_pred EcCCCCEEEEEECC-C--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCCCccccccc
Q 005913 555 MSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTE 628 (670)
Q Consensus 555 ~sp~g~~l~sg~~d-g--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~ 628 (670)
|+|+|++|++++.+ | .|++||+.+++. ..+..|...+.+++|+|+|++|++++.+ +.|++||+.++..
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----- 347 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----- 347 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-----
Confidence 99999999988864 4 788889988764 4455677789999999999999988864 5899999987542
Q ss_pred cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+..+. .+.+++|+|+|.+|++++.++
T Consensus 348 -----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 348 -----------QVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp -----------EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred -----------EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 1222332 799999999999999888765
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=8.1e-25 Score=222.75 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=199.8
Q ss_pred EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEE
Q 005913 368 GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL 447 (670)
Q Consensus 368 ~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~l 447 (670)
.++.++.|++||+.+. ....+..|...|.+++|+|++++|++++ ++.|++
T Consensus 17 ~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~ 66 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYR 66 (297)
T ss_dssp -CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEE
T ss_pred CCCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEE
Confidence 3457899999998641 2334566889999999999999999987 789999
Q ss_pred EeCCC-CceeEEeeCC-CccEeEEEEecCCCEEEEEE--CCCcEEEE--ECCCCceeEEecccCCCeeEEEEcCCCCEEE
Q 005913 448 WSTKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521 (670)
Q Consensus 448 wd~~~-~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s--~dg~v~lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~ 521 (670)
||+.+ +........+ ...+.+++|+|+|+++++++ .++...+| +..++. ...+..+ ..+.+++|+|++++|+
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 67 LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 99998 7777666665 46789999999999999999 33455555 445544 4444434 4589999999999887
Q ss_pred -EEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCC-CCeeeEEeeCCCcceEEEEE
Q 005913 522 -TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY 597 (670)
Q Consensus 522 -tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~ 597 (670)
+++.++.+++|++. .+.....+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+..|...+.+++|
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP 224 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE
T ss_pred EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEE
Confidence 67789999999863 2334455667888999999999999888766 58999999986 56667778888889999999
Q ss_pred cCCCCEEEEEECC-----------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 598 SCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 598 s~~g~~l~sgs~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
+|+|++|++++.+ +.|.+||+.++.. ..+..+..+...|.+++|+|+|..|++++.
T Consensus 225 s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 225 SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------------eeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 9999999988876 5699999987542 123333456678899999999999988877
Q ss_pred CC
Q 005913 667 SK 668 (670)
Q Consensus 667 dg 668 (670)
+.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2e-24 Score=251.30 Aligned_cols=293 Identities=14% Similarity=0.106 Sum_probs=211.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCC-CccceeeeecCccC
Q 005913 351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG-RKRSYTLYQGHSGP 423 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~-dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~ 423 (670)
...|.+++|||||++||+++. || .|++||+.+............. +......... .......+ .....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRI-AAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhh-ccccC
Confidence 456999999999999999988 88 8999999864332211110000 0000000000 00000000 01134
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
|.+++|||||++|++++. ++|++||+.++. ....+..|...+.+++|+|+|++|++++. +.|++||+.+++.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEec
Confidence 788999999999999886 899999999873 44556678888999999999999999874 69999999988776655
Q ss_pred cccCCC----------------eeEEEEcCCCCEEEEEEcCC---------------------------------cEEEE
Q 005913 502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW 532 (670)
Q Consensus 502 ~~~~~~----------------v~~v~~~p~~~~l~tgs~dg---------------------------------~I~iw 532 (670)
..+... +.+++|+|||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999988776 89999
Q ss_pred ECCC-CcEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCCeeeEEeeCCCc----ceEEEEEcCC
Q 005913 533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYSCE 600 (670)
Q Consensus 533 d~~~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~-----dg~I~iwDl~~~~~~~~~~~h~~----~V~sl~~s~~ 600 (670)
|+.+ ++...... .|...+.+++| |||++|++++. ++.|++||+.+++....+..+.. .+.+++|+||
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9998 87765543 36778999999 99999997754 57899999999987776665543 4568999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913 601 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL 666 (670)
Q Consensus 601 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~fs~~~~~La~gs~ 666 (670)
|+++++++.||.++||.+..... ...+..+...|..+ .|+|+|..|+..+.
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~---------------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK---------------AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC---------------EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred CeEEEEecCCCccEEEEEcCCCC---------------eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 99999999999988988763211 22344556678887 59999987654443
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=7.1e-23 Score=215.13 Aligned_cols=272 Identities=10% Similarity=0.033 Sum_probs=214.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913 349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (670)
.....+..++|+|+++++++++. ++.|.+||..+.. ....+. ..
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence 34467899999999999988874 5679999987521 112222 22
Q ss_pred cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCcc---------EeEEEEecCCCEEEEEE--CCCcEEE
Q 005913 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI 489 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~l~~sp~g~~l~s~s--~dg~v~l 489 (670)
..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+... +.++.|+|+|.++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 3467899999999655 4555799999999999888777764422 78899999999887776 4789999
Q ss_pred EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec----CCCCeEEEEEcCCCCEEEEE
Q 005913 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~sg 565 (670)
||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|++++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888876666789999999999999999999999999999998877764 45568899999999987776
Q ss_pred EC-CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913 566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP 643 (670)
Q Consensus 566 ~~-dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
+. ++.|.+||+.+++.+..+..+.. ..++|+|+|+++++++ .++.|.+||..++... ..+.
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------~~~~ 311 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---------------KTFD 311 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE---------------EEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE---------------EEEe
Confidence 65 49999999999998887765432 5799999999665555 6899999999876432 2222
Q ss_pred CCCCCeEEEEEecCCcEEEEeeCC
Q 005913 644 TKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 644 ~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
. ...+.+++|+|+|++|+++..+
T Consensus 312 ~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 312 T-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEC
T ss_pred c-CCCCCeEEEcCCCCEEEEEEcc
Confidence 2 2357899999999977766655
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=4.4e-23 Score=231.00 Aligned_cols=299 Identities=11% Similarity=0.088 Sum_probs=226.2
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCCccccccCCCCCCCCCCCccccC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+.+|+...... ..++.... .+.+++|||||++|++++.|+.|++||+ .+
T Consensus 158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------ 211 (543)
T 1nir_A 158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------ 211 (543)
T ss_dssp GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence 45677776544332 23333233 3999999999999999999999999998 32
Q ss_pred CCCCccceeeeecCccCEEEEEEcC----CCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-----------CccEeEEE
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ 470 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp----~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~ 470 (670)
......+. +...+.+++|+| +|++|++++. +++|.+||..+++++..+..+ ...+..+.
T Consensus 212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 12233333 345679999999 9999998884 899999999999988887653 22688999
Q ss_pred EecCCCE-EEEEECCCcEEEEECCCCceeE--EecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec-
Q 005913 471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG- 545 (670)
Q Consensus 471 ~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~- 545 (670)
++|++.. +++...++.|.+||+.+.+.+. .+ .+...+.+++|+|+|+++++++ .+++|.+||+.+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9997665 5566678999999998766544 33 3556788999999999887665 588999999999999988764
Q ss_pred ---CCCCeEEEEEcCC-CCEEEEEE-CCCeEEEEeCCC-------CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-----
Q 005913 546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGS----- 608 (670)
Q Consensus 546 ---h~~~I~~l~~sp~-g~~l~sg~-~dg~I~iwDl~~-------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs----- 608 (670)
|.+....+ ++|+ |..++++. .|++|.+||+.+ ++++.++.+|.+.+..+.++|+|++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 55444443 5777 66667765 689999999998 899999999998889999999999999987
Q ss_pred --CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 609 --ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 609 --~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.+++|.|||+.+.+....... .....-+..+...+.++.|+|+|..+.++..
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLP------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEEC------HHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred cccCceEEEEECCCCCCCeEEee------chhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 277999999998764311100 0001113455678999999999999987743
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.7e-23 Score=243.50 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=208.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.|.+++|||||++|++++. +.|.+|++.+... .....+..|...+.+++||||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD 162 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK 162 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence 4889999999999999976 9999999875200 012234567788999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc----------------EeEEEEecCCCEEEEEECCC-----------
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR----------- 485 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~l~~sp~g~~l~s~s~dg----------- 485 (670)
|++|++++. +.|++||+.++........+... +.++.|+|||++|++++.|+
T Consensus 163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 999999874 68999999987766554444332 47899999999999998776
Q ss_pred ----------------------cEEEEECCC-CceeEEec--ccCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECC
Q 005913 486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS 535 (670)
Q Consensus 486 ----------------------~v~lwd~~~-~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~-----dg~I~iwd~~ 535 (670)
.|++||+.+ ++...... .|...+.+++| |+|++|++++. +..|++||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 889999988 77665543 36778999999 99999998764 5689999999
Q ss_pred CCcEEEEEecCCC----CeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEEE-EEcCCCCEEEEE-E
Q 005913 536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYSCEGSLLASG-S 608 (670)
Q Consensus 536 ~~~~~~~~~~h~~----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl-~~s~~g~~l~sg-s 608 (670)
++++...+..+.. .+.+++|+|||+++++++.||.+.||.+. .+. ...+..|...|.++ .|+|+|+.|+.. +
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 9998887766553 45689999999999999999987777665 345 77788888888887 599999877554 4
Q ss_pred CCC--cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 609 ADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 609 ~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.++ .++||++..... .+..+.. ...+.+++|+|+|..|+....
T Consensus 400 ~~~~~~~~l~~~~~~g~--------------~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 400 IESARESQIYAVPLQGG--------------QPQRLSK-APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp SSCTTCBEEEEEETTCC--------------CCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEEEEEEEcCCC--------------Ceeeccc-CCCceEEEECCCCCEEEEEec
Confidence 455 899999864221 1122222 456889999999998887654
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.2e-22 Score=212.14 Aligned_cols=265 Identities=10% Similarity=0.136 Sum_probs=190.2
Q ss_pred ccceecCCCC-CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913 329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (670)
Q Consensus 329 ~~~~~l~~~~-~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (670)
...+++|... ...........+...+.+++|+|++++|++++.+ +.|.+|++....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---------------------- 71 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---------------------- 71 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence 3466777542 2233344455677789999999999999988876 999999986210
Q ss_pred CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC---CCceeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (670)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~---~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 482 (670)
+.......+..+. .+.+++|+|++++|++++. ++.|.+||+. .......+..+ ..+.+++|+|+|.++++++
T Consensus 72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence 0111222333333 7889999999998876664 8899999994 33344444443 4588999999999888887
Q ss_pred -CCCcEEEEECCC-CceeE----Eec-ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC--CcE--EEEEe----cC
Q 005913 483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH 546 (670)
Q Consensus 483 -~dg~v~lwd~~~-~~~~~----~~~-~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~--~~~--~~~~~----~h 546 (670)
.++.|.+||+.+ ++... .+. .....+.+++|+|+++++++++ .++.|.+||+.. ++. ...+. ++
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 899999999987 54432 222 2345788999999999876655 789999999953 433 22222 11
Q ss_pred --CCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCC--C--CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 005913 547 --RSMILSLAMSPDGRYMASG-DEDGTIMMWDLA--S--GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV 618 (670)
Q Consensus 547 --~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~--~--~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~ 618 (670)
...+.+++|+|+|++|+++ ..++.|.+||+. + .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2356789999999988754 478999999998 2 345555555544 88999999999888887 6899999976
Q ss_pred CC
Q 005913 619 TT 620 (670)
Q Consensus 619 ~~ 620 (670)
..
T Consensus 307 d~ 308 (343)
T 1ri6_A 307 VG 308 (343)
T ss_dssp ET
T ss_pred cC
Confidence 53
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.2e-22 Score=227.43 Aligned_cols=267 Identities=11% Similarity=0.107 Sum_probs=212.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-cCccCEEEEEEcCCCCEE
Q 005913 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDFI 436 (670)
Q Consensus 358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~L 436 (670)
.|+|++.++++++.+++|.+||..+. .....+. ++. +.+++|+|+|++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~----------------------------~~~~~i~~g~~--~~~v~~spdg~~l 193 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK----------------------------KIVKVIDTGYA--VHISRMSASGRYL 193 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECSTT--EEEEEECTTSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc----------------------------eEEEEEecCcc--cceEEECCCCCEE
Confidence 37889999999999999999998752 2333444 333 8899999999999
Q ss_pred EEEeCCCeEEEEeC--CCCceeEEeeCCCccEeEEEEec----CCCEEEEEE-CCCcEEEEECCCCceeEEeccc-----
Q 005913 437 LSSSADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIWSMDRIQPLRIMAGH----- 504 (670)
Q Consensus 437 ~s~s~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~l~~sp----~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~----- 504 (670)
++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+++++++ .+++|.+||..+++++..+..+
T Consensus 194 ~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 194 LVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 99999999999999 78888888874 44579999999 999999988 4899999999999998887642
Q ss_pred -----C-CCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEE--EEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005913 505 -----L-SDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMW 574 (670)
Q Consensus 505 -----~-~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iw 574 (670)
. ..+.++.++|++.. +++...++.|.+||+.+++.+. .+ .+...+.+++|+|+|+++++++ .++.|.+|
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 2 36889999997765 4556678999999998876543 33 4566788999999999877654 68999999
Q ss_pred eCCCCeeeEEeeC----CCcceEEEEEcCC-CCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 575 DLASGRCVTPLMG----HTSCVWTLAYSCE-GSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 575 Dl~~~~~~~~~~~----h~~~V~sl~~s~~-g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
|..+++++..+.. |.+....+ ++|+ +.+++++. .|++|.+||+.+... ....+..+.++..+...
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--------~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--------PQYAWKKVAELQGQGGG 422 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--------TTTBTSEEEEEECSCSC
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--------chhcCeEEEEEEcCCCC
Confidence 9999999888774 65544444 4676 66777775 689999999987321 11123567788888888
Q ss_pred eEEEEEecCCcEEEEee
Q 005913 649 VYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs 665 (670)
+..++|+|+++.|++++
T Consensus 423 ~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CCCEECCTTCCEEEECC
T ss_pred ceEEEcCCCCCcEEEec
Confidence 99999999999999987
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.5e-22 Score=209.40 Aligned_cols=275 Identities=12% Similarity=0.099 Sum_probs=195.4
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913 357 ASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (670)
Q Consensus 357 l~fs~d~~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (670)
..|++++++ ++++..++.|.+||+.+. ........+...+ +++|+|++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~-~~~~s~dg~~ 53 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL----------------------------EILNQITLGYDFV-DTAITSDCSN 53 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECCCCEE-EEEECSSSCE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc----------------------------ceeeeEEccCCcc-eEEEcCCCCE
Confidence 345666555 667788999999998752 1223333445556 9999999997
Q ss_pred EEEEeC-CCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecccCCCeeE
Q 005913 436 ILSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDC 510 (670)
Q Consensus 436 L~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg---~v~lwd~~~~~~~~~~~~~~~~v~~ 510 (670)
+++++. ++.|++||+.++.. ...+..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+
T Consensus 54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred EEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 776665 89999999998887 777777777776699999999999555553 8999999999888877644 56789
Q ss_pred EEEcCCCCEEEEE-EcCCc-EEEEECCCCcEE----EEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee--
Q 005913 511 VRWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC-- 581 (670)
Q Consensus 511 v~~~p~~~~l~tg-s~dg~-I~iwd~~~~~~~----~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~-- 581 (670)
++|+|+|++++++ ..++. |.+|++.....+ .........+.+++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9999999866655 45588 999998764433 12223445689999999999665554 689999999999888
Q ss_pred -eEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 582 -VTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 582 -~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
+..+..+ ..+..++|+|+|++|++++ .++.|.+||+.++.......... .+...+.....+..++|+|+|.
T Consensus 213 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 213 LLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH------GLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp EEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC------CCCCCCGGGTTCCCEEECTTSS
T ss_pred eeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc------ccccCCCCcccccceEECCCCC
Confidence 7776644 5678999999999776654 57889999998865411100000 0000011111235689999999
Q ss_pred EEEEeeCCC
Q 005913 660 LFAAGALSK 668 (670)
Q Consensus 660 ~La~gs~dg 668 (670)
.|++++.++
T Consensus 286 ~l~v~~~~~ 294 (331)
T 3u4y_A 286 KLFISANIS 294 (331)
T ss_dssp EEEEEETTT
T ss_pred EEEEecCCC
Confidence 887776654
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=8.6e-23 Score=236.71 Aligned_cols=299 Identities=14% Similarity=0.108 Sum_probs=211.7
Q ss_pred cceecCCCCCCceeEEEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCccccccCCCCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND 397 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~---~V~~l~fs~d~~~La~g~~d---------g~I~Iwdl~~~~~~~~~~~~~~~~~ 397 (670)
..+++|+........ .+..+.. .|.+++|||||++||+++.+ +.|.+||+.+...
T Consensus 37 g~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------ 103 (723)
T 1xfd_A 37 GTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------ 103 (723)
T ss_dssp SCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred CCEEEEECCCCcEEE-EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence 367788765543322 2333332 49999999999999999764 7788999875221
Q ss_pred CCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccE-----------
Q 005913 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV----------- 466 (670)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V----------- 466 (670)
..+....+|...+.+++|||||+.|+.++. +.|++|++.++........+...+
T Consensus 104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 111112245556888999999999999886 799999999887776665544333
Q ss_pred -------eEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceeEEeccc-
Q 005913 467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH- 504 (670)
Q Consensus 467 -------~~l~~sp~g~~l~s~s~dg----------------------------------~v~lwd~~~~~~~~~~~~~- 504 (670)
.+++|+|||++|++++.|+ .|++||+.+++....+..+
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 7899999999999987653 7999999988766666654
Q ss_pred -----CCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEEecC-CCCe----EEEEEcCCCCEEEE--EECC
Q 005913 505 -----LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGH-RSMI----LSLAMSPDGRYMAS--GDED 568 (670)
Q Consensus 505 -----~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h-~~~I----~~l~~sp~g~~l~s--g~~d 568 (670)
...+.+++|+|||+++++.+.. ..|++||+.++++...+..+ .+.+ .+++|+|||+.|+. +..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 5678999999999988776543 57999999999987766543 3443 37899999997765 4566
Q ss_pred C------eEEEEe-CCCCe--eeEEeeCCCcceEE-EEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcc
Q 005913 569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNR 635 (670)
Q Consensus 569 g------~I~iwD-l~~~~--~~~~~~~h~~~V~s-l~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~ 635 (670)
| .|.+|| ...+. +...+..+...+.. ++|+|+|+.|+..+.+ +.+++|++...... .
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~----------~ 398 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----------N 398 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----------C
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC----------C
Confidence 7 577788 34444 14555544444554 6999999999876665 78999998754310 0
Q ss_pred cccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
...+..-..+...+..++|+|+|+.|+....
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 0111110014556889999999998887543
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.5e-22 Score=234.13 Aligned_cols=267 Identities=16% Similarity=0.164 Sum_probs=203.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|.+++|||| ..++.+ .++.|++||+.+. ....+..+.+.+.+++|||
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp 130 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP 130 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence 56999999999 666666 4599999998641 2233445667788899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-----CceeEEeeCCCcc--------------EeEEEEecCCCEEEEEE----------
Q 005913 432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS---------- 482 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~l~~sp~g~~l~s~s---------- 482 (670)
+|+.|+++ .++.|++|++.+ ++.......+... +.++.|+|||++|++++
T Consensus 131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 99999985 679999999998 7665544443332 48999999999999998
Q ss_pred -----------------------CCCcEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEE
Q 005913 483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW 532 (670)
Q Consensus 483 -----------------------~dg~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iw 532 (670)
.+..|++||+.+++...... .|...+.+++|+|+|++|++++.++ .|++|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 44689999999887655443 4667799999999999999988776 89999
Q ss_pred ECCCCcEEEEEe-c-CCC---CeEEEEEcC--CCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEE-EEEcCCCCE
Q 005913 533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYSCEGSL 603 (670)
Q Consensus 533 d~~~~~~~~~~~-~-h~~---~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~s-l~~s~~g~~ 603 (670)
|+.+++....+. . +.. .+.+++|+| +|+++++++.||.+++|++. ++..+..+..|...+.+ ++|+|+|+.
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 999994443332 2 222 246789999 99999999999999999886 67777888888888877 799999998
Q ss_pred EEEEECC-C----cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 604 LASGSAD-C----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 604 l~sgs~D-g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
|+.++.+ + .|..||+.++.. ..+ ++...+.+++|+|+|..++.++.+
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~~~~~----------------~~l-~~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIKGGKT----------------KDL-TPESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETTCCCC----------------EES-CCSSSEEEEEECTTSSEEEEEEEC
T ss_pred EEEEecCCCCceEEEEEEEcCCCCc----------------eec-cCCCceEEEEECCCCCEEEEEecC
Confidence 7766554 3 556666655321 112 244568999999999988876544
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.1e-23 Score=208.29 Aligned_cols=250 Identities=16% Similarity=0.137 Sum_probs=191.5
Q ss_pred ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCccccccCCCCCCCCCCCccccCC
Q 005913 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
...+++|+....... .+..+...|.+++|+|||++|++++ ++.|.+|++.+ ...
T Consensus 21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------- 75 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------- 75 (297)
T ss_dssp CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence 456777765544433 4556788899999999999999986 88999999874 221
Q ss_pred CCCccceeeeecC-ccCEEEEEEcCCCCEEEEEe--CCCeEEEE--eCCCCceeEEeeCCCccEeEEEEecCCCEEE-EE
Q 005913 408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS 481 (670)
Q Consensus 408 ~~~~~~~~~~~~h-~~~V~~l~~sp~~~~L~s~s--~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~ 481 (670)
.....+| ...|.+++|+|++++|++++ .++.+.|| ++.++. ...+..+. .+..++|+|++++++ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEE
Confidence 1112233 36788999999999999998 33445555 555444 34444433 488999999999887 77
Q ss_pred ECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCC
Q 005913 482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD 558 (670)
Q Consensus 482 s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~ 558 (670)
+.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d 227 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS 227 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence 8899999998642 234456667888999999999999888776 58999999986 56667777788888999999999
Q ss_pred CCEEEEEECC-----------CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913 559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 559 g~~l~sg~~d-----------g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
|++|++++.+ +.|++||+.+++. +..+.+|...+.+++|+|+|++|++++.+.
T Consensus 228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999988765 5699999988765 444557888999999999999998887664
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.9e-23 Score=242.16 Aligned_cols=271 Identities=10% Similarity=0.091 Sum_probs=199.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc---CEEEEEE
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF 429 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~ 429 (670)
.+.+++|||||+++++ +.||.|++||+.+.. ....+.+|.. .|.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence 3677899999998876 689999999987521 2233344443 4899999
Q ss_pred cCCCCEEEEEeCC---------CeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913 430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 430 sp~~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~ 497 (670)
||||++|++++.+ +.|++||+.+++. ..+. +|...+..++|||+|++|++++. +.|++||+.+++.
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 9999999999874 7888999998876 3333 34445889999999999999986 7999999999888
Q ss_pred eEEecccCCCe------------------eEEEEcCCCCEEEEEEcCC--------------------------------
Q 005913 498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK-------------------------------- 527 (670)
Q Consensus 498 ~~~~~~~~~~v------------------~~v~~~p~~~~l~tgs~dg-------------------------------- 527 (670)
......+...+ .+++|+|+|++|++++.|+
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 77766544433 7899999999999987653
Q ss_pred --cEEEEECCCCcEEEEEecC------CCCeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCCeeeEEeeC-CCcceE-
Q 005913 528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCVW- 593 (670)
Q Consensus 528 --~I~iwd~~~~~~~~~~~~h------~~~I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~~~~~~~-h~~~V~- 593 (670)
.|++||+.+++....+..+ ...+.+++|||||++|++... +..|++||+.++++...+.. +.+.+.
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 306 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR 306 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence 7999999998865666554 567899999999999877653 35799999999987665543 334443
Q ss_pred ---EEEEcCCCCEEEE--EECCC------cEEEEeC-CCCccccccccccCCcccccccccCCCCCCeEE-EEEecCCcE
Q 005913 594 ---TLAYSCEGSLLAS--GSADC------TVKLWDV-TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLL 660 (670)
Q Consensus 594 ---sl~~s~~g~~l~s--gs~Dg------~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~fs~~~~~ 660 (670)
+++|+|||+.|+. +..++ .|.+||+ ..+.. .....+......+.. ++|+|+|+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------~~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-------------DNIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-------------CCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-------------cceeEeecCCeEEEeeeEEcCCCCE
Confidence 7899999997664 45677 4666663 33210 001122223334554 699999999
Q ss_pred EEEeeCC
Q 005913 661 FAAGALS 667 (670)
Q Consensus 661 La~gs~d 667 (670)
|+..+.+
T Consensus 374 l~~~~~~ 380 (723)
T 1xfd_A 374 IYFLSTE 380 (723)
T ss_dssp EEEEESS
T ss_pred EEEEEcC
Confidence 8766654
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.6e-22 Score=208.48 Aligned_cols=262 Identities=13% Similarity=0.186 Sum_probs=187.2
Q ss_pred EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC-C
Q 005913 365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-T 443 (670)
Q Consensus 365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D-g 443 (670)
++++++.++.|++|++...+. . .......|...+.+++|+|++++|++++.+ +
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 60 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------------------------L-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF 60 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------------------------E-EEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc-------------------------E-EEeeeEecCCCCceEEECCCCCEEEEeecCCC
Confidence 444557899999999863110 1 112223567788999999999999888876 9
Q ss_pred eEEEEeCC--CCc--eeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECC---CCceeEEecccCCCeeEEEEcC
Q 005913 444 TIRLWSTK--LNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHI 515 (670)
Q Consensus 444 ~I~lwd~~--~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~---~~~~~~~~~~~~~~v~~v~~~p 515 (670)
.|.+|++. ++. .+..+..+. .+.+++|+|+|.++++++. ++.|.+||+. ..+....+..+ ..+.+++|+|
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred eEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 99999997 444 334455444 7889999999998877765 7899999994 33444555433 5689999999
Q ss_pred CCCEEEEEE-cCCcEEEEECCC-CcEEE----EEec-CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC--Cee--eE
Q 005913 516 NCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--VT 583 (670)
Q Consensus 516 ~~~~l~tgs-~dg~I~iwd~~~-~~~~~----~~~~-h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~--~~~--~~ 583 (670)
+++++++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|+++++++ .++.|.+||+.. +.. ..
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 999988887 899999999987 65432 2222 345788999999999776655 889999999953 432 22
Q ss_pred Eee----CC--CcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913 584 PLM----GH--TSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656 (670)
Q Consensus 584 ~~~----~h--~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~ 656 (670)
.+. ++ ...+.+++|+|+|++|+++ ..++.|.+|++...... ...+..++.... +.+++|+|
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----------~~~~~~~~~~~~-~~~~~~s~ 286 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKEGFQPTETQ-PRGFNVDH 286 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEEEEEECSSS-CCCEEECT
T ss_pred eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----------eEEeeeecCCCc-cceEEECC
Confidence 222 11 2356789999999887754 47899999999742110 112333333333 88999999
Q ss_pred CCcEEEEeeC
Q 005913 657 RNLLFAAGAL 666 (670)
Q Consensus 657 ~~~~La~gs~ 666 (670)
+|.+|++++.
T Consensus 287 dg~~l~~~~~ 296 (343)
T 1ri6_A 287 SGKYLIAAGQ 296 (343)
T ss_dssp TSSEEEEECT
T ss_pred CCCEEEEecC
Confidence 9998887774
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.2e-22 Score=229.66 Aligned_cols=259 Identities=11% Similarity=0.018 Sum_probs=197.0
Q ss_pred CEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEc
Q 005913 353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS 430 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s 430 (670)
+|.+++|+|||++||.++. ||+++||++.+. ....+..|. ..|.+++|+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG 73 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence 5999999999999998876 999999997431 223334444 689999999
Q ss_pred CCCCEEEEEeC---CCeEEEEeCCC--CceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEeccc
Q 005913 431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 431 p~~~~L~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
|+ +.+++++. +...++|.+.. ......+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.......+
T Consensus 74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~ 151 (582)
T 3o4h_A 74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP 151 (582)
T ss_dssp CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence 99 77777765 45566655443 22222333222 3446688888753 333344455569999988766655433
Q ss_pred CCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCC
Q 005913 505 LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLAS 578 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg--~I~iwDl~~ 578 (670)
. .+++|+|+|++|++++.+ +.|++||+.+++.. .+..|.+.+.+++|||||++|+++..+| .|++||+.+
T Consensus 152 ~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 152 G---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp S---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred C---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 3 889999999999988877 78999999988865 5678888899999999999999888888 899999999
Q ss_pred CeeeEEeeCCCcceEEEE--------EcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913 579 GRCVTPLMGHTSCVWTLA--------YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 650 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~--------~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 650 (670)
++.. .+.+|...+.+++ |+|||.++++++.||++++|++ +.. +. .....|.
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~---------------~~---~~~~~v~ 286 (582)
T 3o4h_A 228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER---------------VE---APQGNHG 286 (582)
T ss_dssp CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE---------------EC---CCSSEEE
T ss_pred CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe---------------ec---cCCCceE
Confidence 8887 7778887777777 9999999999999999999999 321 11 1225688
Q ss_pred EEEEecCCcEEEEeeCCC
Q 005913 651 SLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 651 ~l~fs~~~~~La~gs~dg 668 (670)
+++|+ +|.++++++.+.
T Consensus 287 ~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp EEEEE-TTEEEEEEEETT
T ss_pred EEEec-CCEEEEEEcCCC
Confidence 99999 999998887664
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=4e-22 Score=240.94 Aligned_cols=273 Identities=12% Similarity=0.127 Sum_probs=220.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
..+.+|...+.++.|+++ .+++++..+|.++||.+...+ .....+..|. .+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY 247 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence 344778889999999998 677788889999999875311 1122333343 35
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-----------CCccEeEEEEe-cCCCEEEEEECCCcEEEEEC
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~l~~s-p~g~~l~s~s~dg~v~lwd~ 492 (670)
...+|+|+|+.|++++ ++.|++|++... .+..+.+ |...+.+++|+ |+|+++++++ ++.+.+|++
T Consensus 248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 6779999999998874 899999999543 3445444 34468999999 9999999988 789999999
Q ss_pred CCCceeEEecccCC-CeeEEEEcCCCCEEEEEEcCCcEE-EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 493 ~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~tgs~dg~I~-iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
..+... .+..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++.... .+|...+.+++|||+|++|++++.++.
T Consensus 325 ~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 325 SGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp TSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence 887654 4566777 89999999 999999999888899 999988776544 478889999999999999999999999
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----------cEEEEeCCCCccccccccccCCccccccc
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------TVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 640 (670)
|++||+.+++......+|.+.+.+++|||||++|++++.++ .|++||+.++. +.
T Consensus 402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----------------~~ 465 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------------IF 465 (1045)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------------EE
T ss_pred EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----------------EE
Confidence 99999999988877778999999999999999999887654 89999998753 22
Q ss_pred ccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 641 TLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 641 ~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.+..+...+.+++|+|+|+.|++++.++
T Consensus 466 ~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 466 AATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp ECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred EeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 3445566788999999999999888754
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3.5e-21 Score=200.75 Aligned_cols=262 Identities=11% Similarity=0.068 Sum_probs=190.1
Q ss_pred cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (670)
..+.+|+........ .+..+...+ +++|+|||+++++++. ++.|.+||+.+...
T Consensus 20 ~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------- 74 (331)
T 3u4y_A 20 RRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------- 74 (331)
T ss_dssp TEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-----------------------
T ss_pred CeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-----------------------
Confidence 466677654443322 223334456 9999999997766655 88999999875211
Q ss_pred CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECC
Q 005913 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD 484 (670)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~d 484 (670)
....+..+..++.+++|+|++++|+++..++ .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..+
T Consensus 75 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 75 ----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp ----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETT
T ss_pred ----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCC
Confidence 1344555666666699999999999655553 89999999988887776544 46899999999865555 555
Q ss_pred Cc-EEEEECCCCcee----EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE---EEEEecCCCCeEEEEE
Q 005913 485 RT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAM 555 (670)
Q Consensus 485 g~-v~lwd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~ 555 (670)
+. +.+|+++....+ .........+.+++|+|+|+++++++ .++.|++||+.+++. +..+..+ ..+.+++|
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV 228 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence 88 999998754333 11223445689999999999776655 688999999999988 7777644 66789999
Q ss_pred cCCCCEEEEEE-CCCeEEEEeCCCCee--eEEeeCC----Ccc---eEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCc
Q 005913 556 SPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSC---VWTLAYSCEGSLLASGSA-DCTVKLWDVTTST 622 (670)
Q Consensus 556 sp~g~~l~sg~-~dg~I~iwDl~~~~~--~~~~~~h----~~~---V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~~~~ 622 (670)
+|+|++|++++ .++.|.+||+.+++. +..+..+ ... +..++|+|+|++|++++. ++.|.+||+....
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999776654 578899999999877 4443322 222 245899999998866655 5699999998753
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.5e-21 Score=235.90 Aligned_cols=288 Identities=11% Similarity=0.047 Sum_probs=221.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS- 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s- 430 (670)
..+.+.+|||||++||.+ .++.|.+|++...... . .... ..........|...+.+++|+
T Consensus 245 ~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~---l~~~--------------~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 245 TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-K---IEIG--------------DLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-E---CCCC--------------CCCBCCSEEEECGGGGEEEEEE
T ss_pred CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-e---eccC--------------cccccccccccccccceeeecC
Confidence 357788999999999988 5899999998431110 0 0000 000111123466789999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEECCCcEE-EEECCCCceeEEecccCCCe
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTAR-IWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~dg~v~-lwd~~~~~~~~~~~~~~~~v 508 (670)
|+|+.|++++ ++.|++|++.++... .+..|.. .+.+++|+ +|..+++++.++.+. +|++.+++... +.+|...+
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~ 381 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNV 381 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccce
Confidence 9999999888 789999999876544 4566776 89999999 999999999988888 99998776544 44788899
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----------eEEEEeCCC
Q 005913 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----------TIMMWDLAS 578 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg----------~I~iwDl~~ 578 (670)
.+++|+|+|++|++++.++.|++||+.+++......+|.+.+.+++|||||++|++++.++ .|++||+.+
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 9999999999999999999999999999999888878999999999999999999887654 899999998
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc-------c-cC------------------
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-------K-SG------------------ 632 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-------~-~~------------------ 632 (670)
++ +..+..|...+.+++|+|+|++|++++.++...+|+............ . ..
T Consensus 462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 87 667778888899999999999999999999888898654322100000 0 00
Q ss_pred --CcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913 633 --TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 633 --~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~ 663 (670)
......+..++.+...+..++|+|+|.++++
T Consensus 541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE
T ss_pred cccCHhHceEEcCCCCCChhheEEcCCCeEEEE
Confidence 0001123345556678999999999988875
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.4e-21 Score=210.93 Aligned_cols=254 Identities=17% Similarity=0.152 Sum_probs=181.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..++++++++++.++++|+.+| |+||+......... .. ... .... .........|.+.|++++|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~---~~~-~~~~-----~~~~~~~~~~~~~v~~l~~sp 102 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PG---DDP-NKIV-----DKVQGLLVPMKFPIHHLALSC 102 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TT---CCT-TCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cc---cCc-cccc-----ccCccccccCCCcccEEEEcC
Confidence 3578999999999999999888 99988643110000 00 000 0000 001112234678899999999
Q ss_pred CCCEEE----EEeCCCeEEEEeCCCC--------ce---eEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913 432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 432 ~~~~L~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~ 495 (670)
++++|+ +|+.|++|++||+.+. +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 7888999999998654 22 3456679999999999997 899999999999999999998
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------CCeEEEEEcCCCCEEEEE-EC
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE 567 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~sg-~~ 567 (670)
..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|. ..|.+++|++++.++++. ..
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 7776777888999999999999999999999999999998 66666665442 379999999998887653 34
Q ss_pred CC------eEEEEeCCCCe-----eeEEee-------CCCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCCC
Q 005913 568 DG------TIMMWDLASGR-----CVTPLM-------GHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVTT 620 (670)
Q Consensus 568 dg------~I~iwDl~~~~-----~~~~~~-------~h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~~ 620 (670)
+| .+++||+++.. ....+. +...+-..+.+-++.+++++++. .+.|.|+....
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 43 38999998652 111111 11222233344466676666554 45577776543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.5e-20 Score=197.68 Aligned_cols=254 Identities=7% Similarity=0.084 Sum_probs=180.7
Q ss_pred ceeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (670)
Q Consensus 341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (670)
.........+...+..++|+|||++++++.. ++.|.+|++.... ......+.
T Consensus 29 ~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~~ 82 (347)
T 3hfq_A 29 TLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTVV 82 (347)
T ss_dssp EEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEEE
T ss_pred eEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeeee
Confidence 3344445556677889999999994444432 6899999985311 12333344
Q ss_pred cCccCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eEEeeC---------CCccEeEEEEecCCCEEEEEECCC
Q 005913 419 GHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHDR 485 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~l~~sp~g~~l~s~s~dg 485 (670)
.+...+..++|+|+|++|++++ .+++|.+|++..... +..+.. +...+.+++|+|+|+.+++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5677888999999999988887 789999999963322 222221 122488899999999666666788
Q ss_pred cEEEEECC-CCceeE--Eecc-cCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC--CcE--EEEEecCC------CCe
Q 005913 486 TARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SMI 550 (670)
Q Consensus 486 ~v~lwd~~-~~~~~~--~~~~-~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h~------~~I 550 (670)
.|.+|++. +++... .+.. ....+..++|+|+|++++++ ..++.|++|++.. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 443322 2222 23467889999999977664 5678999999874 543 22333222 348
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEeCCC---CeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCC
Q 005913 551 LSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTT 620 (670)
Q Consensus 551 ~~l~~sp~g~~l~-sg~~dg~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~ 620 (670)
..++|+|+|++|+ ++..++.|.+||+.. ...+..+..+...+.+++|+|+|++|++++.+ +.|.+|++..
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 8999999999874 556789999999972 35566666667778999999999988888765 8999996643
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.2e-21 Score=213.43 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=177.4
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeE-----EeeCCCccEeEEEEecCCCEEE----EEE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS 482 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~l~~sp~g~~l~----s~s 482 (670)
..++.+++++++.++++++.++ +++|+.... ..+. ....+...|.+++|+|+|.+|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999888 899874310 0111 1123566799999999999999 788
Q ss_pred CCCcEEEEECCCC--------ce---eEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCe
Q 005913 483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (670)
Q Consensus 483 ~dg~v~lwd~~~~--------~~---~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I 550 (670)
.|++|++||+.+. ++ +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998654 22 4556679999999999998 8999999999999999999998877777899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC-------CcceEEEEEcCCCCEEEEE-ECCCc------EEEE
Q 005913 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASG-SADCT------VKLW 616 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h-------~~~V~sl~~s~~g~~l~sg-s~Dg~------I~iw 616 (670)
.+++|+|+|++|++|+.||.|++||++ +.....+..| ...|.+++|++++.++++. +.||. +++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 5555555433 3389999999988877553 34433 8999
Q ss_pred eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
++........... .........+.....+-+.+.+-++..++++++...
T Consensus 275 ~l~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 275 LLPKKEEKHPEIF---VNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp ECCCTTTCCCCEE---EECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred EeccCCCCCCcce---EecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 9986532100000 000111122223444555555557777776666543
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.7e-21 Score=197.36 Aligned_cols=255 Identities=11% Similarity=0.129 Sum_probs=192.5
Q ss_pred CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-cCcc-CEEEEEEcCCCCEEE-EEe
Q 005913 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFIL-SSS 440 (670)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~sp~~~~L~-s~s 440 (670)
+++++++.++.|.+||+.+.. ....+. ++.. .+.+++|+|+++.++ +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 53 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA----------------------------VDKVITIADAGPTPMVPMVAPGGRIAYATVN 53 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE----------------------------EEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCc----------------------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence 478899999999999987521 222222 2222 477899999998764 556
Q ss_pred CCCeEEEEeCCCCceeEEeeCC-----CccEeEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecc
Q 005913 441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~g~~l~s~s------------~dg~v~lwd~~~~~~~~~~~~ 503 (670)
.++.|.+||+.+++.+..+... ...+.+++|+|+|.++++++ .++.|.+||+.+++.+..+..
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 6889999999998887766532 22577899999999998886 579999999999888877764
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-------------- 569 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg-------------- 569 (670)
...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|+|..++.++..+
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence 4568889999999988888 68999999999998877765441 11337899998776554332
Q ss_pred ----------eEEEEeCCCCeee-EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 570 ----------~I~iwDl~~~~~~-~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
.|.+||+.+++.. ..+..+...+.+++|+|+|++++++ ++.|.+||+.++...
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~-------------- 273 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI-------------- 273 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--------------
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc--------------
Confidence 4789999998764 2334566778899999999999988 799999999876432
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+.. ...+.+++|+|+|.+|++++.++
T Consensus 274 -~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 274 -KRVPL-PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp -EEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred -ceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence 12211 23578999999999888876654
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=6.1e-21 Score=220.66 Aligned_cols=280 Identities=12% Similarity=0.109 Sum_probs=193.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc--cccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
+..+.|+ |..+++++.+| | +||+.+... ........... .+. . .... ...+...|.+++|+|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~------~l~-~---~~~~--~~~~~~~v~~~~~sp 91 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA------LMP-E---GCKF--QTTDAFPSFRTLDAG 91 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT------TC-----------------CCCEEEEETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh------hcc-c---hhcc--ccccccCceeEEECC
Confidence 5557777 66777777788 8 999876432 11100000000 000 0 0000 112235799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-----CceeEEecccCC
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPLRIMAGHLS 506 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-----~~~~~~~~~~~~ 506 (670)
+ ..++.+. +++|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|++||+.+ ++.......+..
T Consensus 92 d-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 92 R-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp T-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred C-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 9 6666554 5999999998876544 44567778999999999999985 679999999998 776665554444
Q ss_pred C--------------eeEEEEcCCCCEEEEEE---------------------------------cCCcEEEEECCCCcE
Q 005913 507 D--------------VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGEC 539 (670)
Q Consensus 507 ~--------------v~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~ 539 (670)
. +.+++|+|+|++|++++ .+..|++||+.+++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 3 48999999999999987 446799999999887
Q ss_pred EEEEe--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEeCCCCeeeEEee--CCCc---ceEEEEEcC--CCCEEE
Q 005913 540 VRIFI--GHRSMILSLAMSPDGRYMASGDEDG-----TIMMWDLASGRCVTPLM--GHTS---CVWTLAYSC--EGSLLA 605 (670)
Q Consensus 540 ~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg-----~I~iwDl~~~~~~~~~~--~h~~---~V~sl~~s~--~g~~l~ 605 (670)
..... .|...+.+++|+|||++|++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 65543 4667799999999999999987775 89999999984333332 2222 346789999 999999
Q ss_pred EEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE-EEEecCCcEEEEeeCC
Q 005913 606 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLLFAAGALS 667 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~fs~~~~~La~gs~d 667 (670)
+++.||.++||.+..... .+..+..+...+.+ ++|+|+|..|+.++.+
T Consensus 328 ~~~~~g~~~l~~~~~~~~--------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGR--------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EECTTSSCEEEEEETTSC--------------EEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEccCCccEEEEEECCCC--------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 999999999998863211 12344455667876 7999999877665544
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.6e-20 Score=195.39 Aligned_cols=237 Identities=12% Similarity=0.083 Sum_probs=184.7
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-c----CccCEEE
Q 005913 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-G----HSGPVYS 426 (670)
Q Consensus 353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~V~~ 426 (670)
.+.+++|+||+++++ ++..++.|.+||+.+... ...+. + |...+.+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----------------------------LGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----------------------------EEEEECCBTTEEEECTTC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe----------------------------EeeEEcCCcccccccccc
Confidence 588999999998765 555678999999875221 11111 1 2235678
Q ss_pred EEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913 427 ASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (670)
Q Consensus 427 l~~sp~~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~ 494 (670)
++|+|++++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++ ++.|.+||+.+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 99999999998886 579999999998887777665 4457889999999988888 68999999999
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCC------------------------cEEEEECCCCcEE-EEEecCCCC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK------------------------TVRLWDVSSGECV-RIFIGHRSM 549 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg------------------------~I~iwd~~~~~~~-~~~~~h~~~ 549 (670)
++....+..+.. ...+.|+|++.++++++.++ .|.+||+.+++.. ..+..+...
T Consensus 164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 988877764431 11337899998776554332 4789999998875 223456667
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
+.+++|+|+|++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||+.++...
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 8899999999999988 799999999999888777643 45789999999999999999999999999887654
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.2e-19 Score=189.95 Aligned_cols=244 Identities=12% Similarity=0.153 Sum_probs=175.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~d----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+......++|+|||++|++++.+ +.|.+|++.... +..........+.....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC 103 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence 56678889999999999998876 799999986421 01122233334556677
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE------eeC--------CCccEeEEEEecCCCEEEEEE-CCCcEEE
Q 005913 426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC------YKG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI 489 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~------~~~--------h~~~V~~l~~sp~g~~l~s~s-~dg~v~l 489 (670)
.+++ ++++|++++ .+++|.+|++.....+.. ..+ +...+.+++|+|+|+++++++ .++.+.+
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 7888 788777766 688999999975433211 111 123357899999999776665 4789999
Q ss_pred EECCCCce------e-------EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEE--EEEe---cCCCCe
Q 005913 490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIFI---GHRSMI 550 (670)
Q Consensus 490 wd~~~~~~------~-------~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~--~~~~---~h~~~I 550 (670)
|+++.... + .....+...+.+++|+|+|+++++++ .++.|.+||+.++... ..+. .+....
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence 99875431 1 22234456688999999999888877 6899999999877542 2222 233457
Q ss_pred EEEEEcCCCCEEEEEECC--CeEEEEeCC--CCe--eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913 551 LSLAMSPDGRYMASGDED--GTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~d--g~I~iwDl~--~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~ 620 (670)
.+++|+|+|++|+++..+ +.|.+|++. ++. .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 899999999999776654 899999995 444 4444444 45678999999999888887 678999977653
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.7e-19 Score=189.31 Aligned_cols=248 Identities=11% Similarity=-0.013 Sum_probs=191.4
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (670)
.+.+|+....... ........+.+++|+|+|+++++ +..++.|.+||..+....
T Consensus 70 ~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----------------------- 124 (353)
T 3vgz_A 70 VVYRLDPVTLEVT--QAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK----------------------- 124 (353)
T ss_dssp EEEEECTTTCCEE--EEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------------------
T ss_pred cEEEEcCCCCeEE--EEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-----------------------
Confidence 4556654433222 22233455788999999996654 455799999998753221
Q ss_pred CccceeeeecCc---------cCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE
Q 005913 410 RKRSYTLYQGHS---------GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478 (670)
Q Consensus 410 ~~~~~~~~~~h~---------~~V~~l~~sp~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 478 (670)
..+..+. ..+.+++|+|+++++++++ .++.|.+||+.+++.+..+..+...+.+++|+|+|.++
T Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 125 -----GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp -----EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred -----EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 1111111 1368899999999887766 47899999999998888887666668899999999999
Q ss_pred EEEECCCcEEEEECCCCceeEEecc----cCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEEecCCCCeEEE
Q 005913 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSL 553 (670)
Q Consensus 479 ~s~s~dg~v~lwd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l 553 (670)
++++.++.+.+||..+++....+.. +...+.+++|+|+++++++++.+ +.|.+||+.+++.+..+.... ..++
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~ 277 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAV 277 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCE
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceE
Confidence 9999999999999999988877664 45567889999999988777654 899999999999888776543 2579
Q ss_pred EEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913 554 AMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 554 ~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
+|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+|+|++|+++..++
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence 9999999766655 68999999999999888876544 679999999999777776554
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=3.2e-20 Score=194.29 Aligned_cols=234 Identities=13% Similarity=0.087 Sum_probs=181.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCC
Q 005913 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD 434 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~ 434 (670)
.+++++++.++++++.++.|.+||+.+. .....+..+. ..+..++|+|+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~ 55 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNR 55 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC----------------------------cEEEEEecCCCCCCceeEECCCCC
Confidence 4568889999999999999999998752 1222222222 2567899999998
Q ss_pred EEE-EEeCCCeEEEEeCCCCceeEEeeCCC------ccEeEEEEecCCCEEEEEECC------------CcEEEEECCCC
Q 005913 435 FIL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI 495 (670)
Q Consensus 435 ~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~d------------g~v~lwd~~~~ 495 (670)
.++ +++.++.|.+||+.+++.+..+..+. ..+.+++|+|+|+++++++.+ +.|.+||+.++
T Consensus 56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 665 55578999999999988877666432 337889999999999999865 89999999874
Q ss_pred c---eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------------------------
Q 005913 496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------------------- 547 (670)
Q Consensus 496 ~---~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------------------- 547 (670)
+ .+..+.. ...+.+++|+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 136 ~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 3 3344443 34688999999999 66653 449999999988776654331
Q ss_pred -------------------------------------------CCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 548 -------------------------------------------~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
..+.+++|+| +|++++++ ++.|.+||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345678889 99999988 8899999999999887
Q ss_pred EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.+..+ ..+.+++|+|+|++|++++.++.|.+||+.+.+..
T Consensus 290 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 290 AANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 77633 45789999999998888888999999999886543
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=6.8e-20 Score=192.63 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=169.5
Q ss_pred ecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEE
Q 005913 418 QGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS 491 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd 491 (670)
..+...+..++|+|+|+ |++++. ++.|++|++.++.. +..+..+...+..++|+|+|+++++++ .++.+.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34556778899999999 555554 68999999976653 334445677788999999999998888 779999999
Q ss_pred CCC-C--ceeEEecc---------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEE--EEecC-CCCeEEEEE
Q 005913 492 MDR-I--QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIGH-RSMILSLAM 555 (670)
Q Consensus 492 ~~~-~--~~~~~~~~---------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~--~~~~h-~~~I~~l~~ 555 (670)
+.. + ..+..+.. +...+.+++|+|+|+.++++..++.|++||+. +++... .+..+ ...+..++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 963 2 22333321 12348899999999966666678899999998 554332 22222 336788999
Q ss_pred cCCCCEEEE-EECCCeEEEEeCCC--Cee--eEEeeCCC------cceEEEEEcCCCCEE-EEEECCCcEEEEeCCCCcc
Q 005913 556 SPDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 556 sp~g~~l~s-g~~dg~I~iwDl~~--~~~--~~~~~~h~------~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~~~ 623 (670)
+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| +++..++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 999997666 45788999999874 543 23333222 458899999999977 5566789999999874211
Q ss_pred ccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
...+..++.+...+.+++|+|+|++|++++.+
T Consensus 275 ------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 275 ------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp ------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred ------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 12334445555568899999999988887765
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=4.5e-19 Score=187.58 Aligned_cols=234 Identities=12% Similarity=0.153 Sum_probs=165.5
Q ss_pred CccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--Cce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEE
Q 005913 420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKL--NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW 490 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~--~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lw 490 (670)
+...+..++|+|++++|++++.+ +.|.+|++.. +.. +.....+......+++ ++.++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66777889999999999999886 7999998875 332 2333445556667777 888877776 57899999
Q ss_pred ECCCCceeEE----e--cc--------cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc-------E------EEE
Q 005913 491 SMDRIQPLRI----M--AG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI 542 (670)
Q Consensus 491 d~~~~~~~~~----~--~~--------~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~-------~------~~~ 542 (670)
++.....+.. + .+ +...+.+++|+|+|+++++++ .++.|++|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 1 11 123457899999999777665 47899999887543 1 122
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee--eEEee---CCCcceEEEEEcCCCCEEEEEECC--CcEE
Q 005913 543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLM---GHTSCVWTLAYSCEGSLLASGSAD--CTVK 614 (670)
Q Consensus 543 ~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~--~~~~~---~h~~~V~sl~~s~~g~~l~sgs~D--g~I~ 614 (670)
...+...+.+++|+|+|+++++++ .++.|.+||+.++.. +..+. .+...+..++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233455688999999999888877 689999999987754 33332 334557899999999988776654 8999
Q ss_pred EEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 615 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 615 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
+|++...... ...+..+.. ...+.+++|+|+|++|++++.+
T Consensus 286 v~~~~~~~g~-----------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 286 IFKVDETNGT-----------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp EEEECTTTCC-----------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred EEEEcCCCCc-----------EEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence 9999632110 112333333 4567899999999988888744
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=5.2e-20 Score=196.29 Aligned_cols=290 Identities=11% Similarity=-0.001 Sum_probs=192.6
Q ss_pred eEEEeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccce
Q 005913 343 SFYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (670)
Q Consensus 343 ~~~t~~~~~~~V~~-----l~fs~d~~~La~g~~-dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (670)
....+..+...... .+|||||++||.++. +|. |.+|++.+. ...
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~ 73 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VAT 73 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceE
Confidence 34445555555555 889999999998887 674 667776541 122
Q ss_pred eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEE--EecCCCEEEEEE----------
Q 005913 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSS---------- 482 (670)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~g~~l~s~s---------- 482 (670)
....++...+.+++|+|+|+.|+.++.++.|++||+.+++....+..+...+.... ++|++.+++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 22334555555678999999999999999999999999988777776666554444 488999887532
Q ss_pred ------------CCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcC------CcEEEEECCCCcEEEEE
Q 005913 483 ------------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIF 543 (670)
Q Consensus 483 ------------~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~ 543 (670)
.+..|.+||+.+++.... ..+...+..++|+| +|+.|+.++.+ ..|.++|+..+.... +
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-V 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-S
T ss_pred ccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-e
Confidence 346899999998865544 45667789999999 99999887753 378888887665443 4
Q ss_pred ecCC--CCeEEEEEcCCCCEEEEEEC-CC----eEEEEeCCCCee--eEEeeCCCcc---eEEEEEcCCCCEEEEE----
Q 005913 544 IGHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRC--VTPLMGHTSC---VWTLAYSCEGSLLASG---- 607 (670)
Q Consensus 544 ~~h~--~~I~~l~~sp~g~~l~sg~~-dg----~I~iwDl~~~~~--~~~~~~h~~~---V~sl~~s~~g~~l~sg---- 607 (670)
..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++. +..+.++... ...+.|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 3443 25788999999997765443 22 399999998874 3333331111 1123799999987754
Q ss_pred -----ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 608 -----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 608 -----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
..+..|++||+.++........ .. .+.. ........+.+++|+|+|+.|+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~--~~~~--~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQHRVARH-DT--SWKV--FEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp -----CCCCEEEEEETTTTEEEEEEEC-CC--CCCC--BTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred cccccCCCCEEEEEeccCCceEEeccc-cC--cccc--cccccccCCCCccCCCCCCEEEEEecC
Confidence 4567899999987543110000 00 0000 001112247788999999988877653
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=216.50 Aligned_cols=264 Identities=12% Similarity=0.114 Sum_probs=187.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc---CEEEEEEcCC
Q 005913 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL 432 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~ 432 (670)
+++|+|||++++++ .||.|++|++.+.. ....+.+|.. .|.+++||||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ----------------------------SYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCC----------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCc----------------------------EEEEEccccccccceeeEEECCC
Confidence 67899999766655 79999999987521 2223333333 4889999999
Q ss_pred CCEEEEEeC---------CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-c
Q 005913 433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A 502 (670)
Q Consensus 433 ~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~ 502 (670)
|++|++++. +++|++||+.+++.+.... ....+.+++|||||+.|+++. ++.|++|++.+++..+.. .
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 999998876 7899999999887621011 124688999999999999986 789999999888765543 2
Q ss_pred ccCCC-----------------eeEEEEcCCCCEEEEEEcCC----------------------------------cEEE
Q 005913 503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL 531 (670)
Q Consensus 503 ~~~~~-----------------v~~v~~~p~~~~l~tgs~dg----------------------------------~I~i 531 (670)
++... ..+++|+|||++|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 22221 25899999999999988652 7889
Q ss_pred EECCCCcEE---EE-----EecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEe----CCCCeeeEEe----eCCCcc
Q 005913 532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDED----GTIMMWD----LASGRCVTPL----MGHTSC 591 (670)
Q Consensus 532 wd~~~~~~~---~~-----~~~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwD----l~~~~~~~~~----~~h~~~ 591 (670)
||+.+++.. .. +.+|...+.+++||||++++++.... ..|.+|| ..++++...+ .+|.+.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 999988753 21 23577789999999998877775433 3489999 8888766555 467777
Q ss_pred eE-----EEEEcCCCCEEEE--EECCCc--EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913 592 VW-----TLAYSCEGSLLAS--GSADCT--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 662 (670)
Q Consensus 592 V~-----sl~~s~~g~~l~s--gs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La 662 (670)
+. .+.|+|||+.|+. +..+|. |.+|++.++. ...+..+...|..+.++ ++..++
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEE
Confidence 76 8899999996544 445664 5666665432 11233344457777777 766666
Q ss_pred EeeCC
Q 005913 663 AGALS 667 (670)
Q Consensus 663 ~gs~d 667 (670)
..+.+
T Consensus 372 ~~~~~ 376 (719)
T 1z68_A 372 YSSNE 376 (719)
T ss_dssp EEESC
T ss_pred EEEec
Confidence 55543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.3e-20 Score=212.71 Aligned_cols=292 Identities=12% Similarity=0.116 Sum_probs=201.7
Q ss_pred cceecCCCCCCceeEEEeecCCC----CEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCccccccCCCCCC
Q 005913 330 NRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGEN 396 (670)
Q Consensus 330 ~~~~l~~~~~ps~~~~t~~~~~~----~V~~l~fs~d~~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~ 396 (670)
..+++|+........ +..++. .|.+++|||||++||+++. ++.|++||+.+.....
T Consensus 36 ~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--------- 104 (719)
T 1z68_A 36 NNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR--------- 104 (719)
T ss_dssp SCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------
T ss_pred CCEEEEEcCCCcEEE--EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------
Confidence 467788765554332 232222 4899999999999998876 7899999987522100
Q ss_pred CCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccE---------
Q 005913 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV--------- 466 (670)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V--------- 466 (670)
...+ ...+.+++|||||+.|++++ +++|++|++.++...... .++...|
T Consensus 105 -----------------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 105 -----------------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp -----------------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred -----------------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 0001 24578899999999999886 789999999887765432 2232222
Q ss_pred --------eEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCcee---EE-
Q 005913 467 --------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI- 500 (670)
Q Consensus 467 --------~~l~~sp~g~~l~s~s~dg----------------------------------~v~lwd~~~~~~~---~~- 500 (670)
.+++|+|||++|++++.|. .|++||+.+++.. ..
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 4899999999999988652 7889999887653 21
Q ss_pred ----ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEE----CCCCcEEEEE----ecCCCCeE-----EEEEcCCC
Q 005913 501 ----MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPDG 559 (670)
Q Consensus 501 ----~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd----~~~~~~~~~~----~~h~~~I~-----~l~~sp~g 559 (670)
+.+|...+.+++|+||++++++....+ .|++|| +.++++...+ .+|.+.+. +++|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 235777899999999987777754332 489999 8887766555 46777676 88999999
Q ss_pred CEEEE--EECCC--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccc
Q 005913 560 RYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEK 630 (670)
Q Consensus 560 ~~l~s--g~~dg--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~ 630 (670)
+.|+. +..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+.......
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~----- 396 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP----- 396 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-----
T ss_pred CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-----
Confidence 96554 44555 57888887766 45566666678887777 77777766655 889999886521100
Q ss_pred cCCccccccc-ccCCCCCCeEEEEEecCCcEEEEe
Q 005913 631 SGTNRLRSLK-TLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 631 ~~~~~~~~~~-~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
....+. .+..+...+..+.|+|++..++..
T Consensus 397 ----~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 397 ----SKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp ----CEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred ----CceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 001111 123355678899999998877754
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=3.3e-19 Score=201.55 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=168.7
Q ss_pred CccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 005913 420 HSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSH---DRTARIWSMDR 494 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~ 494 (670)
+..+|++++|+|||+.|++++. ||+++||++.++.. ..+..|. ..+..+.|+|+ +.+++++. +....+|.++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999998887 99999999965554 4444454 68999999999 77777765 45556655432
Q ss_pred --CceeEEecccCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 005913 495 --IQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED--- 568 (670)
Q Consensus 495 --~~~~~~~~~~~~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d--- 568 (670)
......+... ..+...+|+|+++. +++++.++.+.+||+.+++.......+. .+++|||||++|++++.+
T Consensus 98 ~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 98 SRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred cCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 2222233322 34556788888863 3344445556699999988776655443 789999999999988777
Q ss_pred -CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 569 -g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
+.|++||+.+++.. .+..|.+.+.+++|||||+.|+++..+| .|++||+.++... .+..+
T Consensus 174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~----------------~~~~~ 236 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE----------------DLELP 236 (582)
T ss_dssp EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----------------ECCCS
T ss_pred CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----------------EccCC
Confidence 78999999888754 6778888999999999999999888898 8999999876532 22233
Q ss_pred CCCeEEEE--------EecCCcEEEEeeCCCC
Q 005913 646 STPVYSLQ--------FSRRNLLFAAGALSKT 669 (670)
Q Consensus 646 ~~~V~~l~--------fs~~~~~La~gs~dgs 669 (670)
...+..++ |+|+|.++++++.+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 268 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGR 268 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence 33444444 9999998898888774
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.6e-18 Score=184.11 Aligned_cols=242 Identities=11% Similarity=0.031 Sum_probs=172.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
..+..++|+|||++|++++.+ .|.+|++. +... ........+ +.+.+++|+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--------------------------~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--------------------------VHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--------------------------EEEEEEECC-SSGGGGCTT
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--------------------------EEeeEeecC-CCCccEEEC
Confidence 467889999999999988877 99999985 2110 000111111 224458899
Q ss_pred CCCCE--EEEEe-------------CCCeEEEEeCCC-CceeEEee----CCCccEeEEEEecCCCEEEEEEC-CCcEEE
Q 005913 431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI 489 (670)
Q Consensus 431 p~~~~--L~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~l~~sp~g~~l~s~s~-dg~v~l 489 (670)
|+|++ +++++ .+|++.+|++.. ++....+. .+...+.+++|+|+|+++++++. ++.|++
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 99994 44553 689999999974 54433333 24567899999999998887764 679999
Q ss_pred EECC-CCcee--EEec--ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC--CCcEEE---EEe-------cCCC---
Q 005913 490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS--- 548 (670)
Q Consensus 490 wd~~-~~~~~--~~~~--~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~--~~~~~~---~~~-------~h~~--- 548 (670)
|+++ +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++... .+. +|..
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 9998 66543 2233 23567899999999999988775 6899999765 565431 222 1222
Q ss_pred ---CeEEEE-EcCCCCEEEEEECC-C-----eEEEEeCC-CCeeeE---EeeCCCcceEEEEEcC---CCCEEEEEECC-
Q 005913 549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYSC---EGSLLASGSAD- 610 (670)
Q Consensus 549 ---~I~~l~-~sp~g~~l~sg~~d-g-----~I~iwDl~-~~~~~~---~~~~h~~~V~sl~~s~---~g~~l~sgs~D- 610 (670)
.+..++ |+|||++|++++.+ + .|.+|++. +++... ....+...+..++|+| +|++|++++.+
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~ 331 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence 488999 99999998876543 2 89999996 565433 2333555567899999 89999999865
Q ss_pred CcEEEEeCCCC
Q 005913 611 CTVKLWDVTTS 621 (670)
Q Consensus 611 g~I~iwd~~~~ 621 (670)
++|.+|++...
T Consensus 332 ~~v~v~~~~~~ 342 (365)
T 1jof_A 332 GWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEEETT
T ss_pred CeEEEEEEchh
Confidence 89999998764
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=2.6e-18 Score=200.00 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=172.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc-----CEEEEE
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----PVYSAS 428 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~ 428 (670)
..++.|+|||.+++++ ||.|++|++.+... ...+.+|.. ...+++
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS----------------------------SVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCE----------------------------EEEECTTTTTTCCSCCCEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCce----------------------------EEEEechhhhhhcccccceE
Confidence 5588999999999987 99999999876322 222333332 234588
Q ss_pred EcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 429 FSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 429 ~sp~~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.||.+. ++.|++|++.++...+
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 99999999998876 56779999988754 3566777899999999999999884 6899999998877554
Q ss_pred Eec-ccCC-----------------CeeEEEEcCCCCEEEEEEcCC----------------------------------
Q 005913 500 IMA-GHLS-----------------DVDCVRWHINCNYIATGSSDK---------------------------------- 527 (670)
Q Consensus 500 ~~~-~~~~-----------------~v~~v~~~p~~~~l~tgs~dg---------------------------------- 527 (670)
... ++.. ....+.|+|||++|+.++.|.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 322 2222 223589999999999876332
Q ss_pred --cEEEEECCC---C---cEEEEEe-----cCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCCe----ee--EE
Q 005913 528 --TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CV--TP 584 (670)
Q Consensus 528 --~I~iwd~~~---~---~~~~~~~-----~h~~~I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~----~~--~~ 584 (670)
.|++||+.+ + +...... +|...+..++|+|||+.++.... +..|++||+.+++ +. ..
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 488899988 7 4433322 37778999999999997766543 3479999999887 32 22
Q ss_pred e--eCCCcceE-----EEEEcCCCCEEE-EEEC-CC--cEEEEeCCCCc
Q 005913 585 L--MGHTSCVW-----TLAYSCEGSLLA-SGSA-DC--TVKLWDVTTST 622 (670)
Q Consensus 585 ~--~~h~~~V~-----sl~~s~~g~~l~-sgs~-Dg--~I~iwd~~~~~ 622 (670)
+ ..|.+.|. +..|+|||+.|+ ..+. +| .|.+||+.++.
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 2 45665554 789999999877 6653 44 57788877643
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1e-18 Score=186.40 Aligned_cols=275 Identities=9% Similarity=-0.041 Sum_probs=180.5
Q ss_pred EEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEEEE
Q 005913 354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASF 429 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~d-g--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~ 429 (670)
+.+++|||||++||.+... | .|.+|++.+.. ...+..+... ...+.|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----------------------------~~~l~~~~~~~~~~~~~ 88 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----------------------------AVQLTEGKGDNTFGGFI 88 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----------------------------EEECCCSSCBCTTTCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----------------------------EEEeecCCCCccccceE
Confidence 6778999999998877543 3 57777866421 1111222222 233689
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-------------------EEEecCCCEEEEE-----ECCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDR 485 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------l~~sp~g~~l~s~-----s~dg 485 (670)
+|+|+.|+.++.++.|++|++.+++.......+...... +.|+|++..++.+ ..+.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999999999999999999999988776666644432222 3456777665544 3566
Q ss_pred cEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcC------CcEEEEECCCCcEEEEEecC-CCCeEEEEEcC
Q 005913 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSP 557 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp 557 (670)
.|++||+.+++..... .+...+..+.|+| ++..|+..+.+ ..|.+||+.+++........ ...+..++|+|
T Consensus 169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 8999999988765554 4667889999999 78877776643 36889998766544333211 22578899999
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC-CCCEEEEEE----------------CCCcEEE
Q 005913 558 DGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGS----------------ADCTVKL 615 (670)
Q Consensus 558 ~g~~l~sg~~d-----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs----------------~Dg~I~i 615 (670)
+|++|+.++.+ +.|++||+.+++...... ..+ .. +.|+| +|+++++++ .++.|.+
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 99988776544 459999998886543222 122 23 89999 999888765 3478999
Q ss_pred EeCCCCccccccccccCCccccccccc-CCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 616 WDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 616 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
||+.++........ .. . +..+ ......+..++|+|+|..|+.++.+
T Consensus 325 ~d~~~~~~~~l~~~-~~--~---~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 325 LNTKAKSAQKLCKH-ST--S---WDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp EETTTTBCCEEEEC-CC--C---CCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred EecccCceEEccCC-CC--c---cccccccccCCCCCceEccCCCeEEEEecC
Confidence 99877542110000 00 0 0000 0001125567899999988877654
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=3.7e-18 Score=178.50 Aligned_cols=221 Identities=9% Similarity=0.071 Sum_probs=168.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEE-EEECCCcEEEEECCCCceeEEecc
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~-s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
++++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999998887777543 2577899999998665 445789999999999888777653
Q ss_pred c------CCCeeEEEEcCCCCEEEEEEcC------------CcEEEEECCCCc---EEEEEecCCCCeEEEEEcCCCCEE
Q 005913 504 H------LSDVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 504 ~------~~~v~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence 3 2337899999999999998865 899999998844 3344443 34688999999999 6
Q ss_pred EEEECCCeEEEEeCCCCeeeEEeeCCC-----------------------------------------------------
Q 005913 563 ASGDEDGTIMMWDLASGRCVTPLMGHT----------------------------------------------------- 589 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~----------------------------------------------------- 589 (670)
++++. .|.+||+.+++.+..+..+.
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 65543 49999999988776654321
Q ss_pred ---------------cceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913 590 ---------------SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653 (670)
Q Consensus 590 ---------------~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 653 (670)
..+.+++|+| +|++++++ ++.|.+||+.++... ..+.. ...+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~ 301 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI---------------KAANL-DHTYYCVA 301 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE---------------EEEcC-CCCccceE
Confidence 1345677889 99999888 889999999876432 12211 23467899
Q ss_pred EecCCcEEEEeeCCC
Q 005913 654 FSRRNLLFAAGALSK 668 (670)
Q Consensus 654 fs~~~~~La~gs~dg 668 (670)
|+|+|..|++++.++
T Consensus 302 ~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFN 316 (349)
T ss_dssp ECSSSSCEEEESBSS
T ss_pred ECCCCCEEEEecCCC
Confidence 999998887776554
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.2e-17 Score=177.28 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=165.0
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEee--CCCccEeEEEEecCCCE--EEEEE------------
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYK--GHNYPVWDVQFNPQGHY--FASSS------------ 482 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~--~h~~~V~~l~~sp~g~~--l~s~s------------ 482 (670)
+...+..++|+|++++|++++.+ .|.+|++. +++...... .+. .+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 33467889999999999999888 99999997 665543322 122 3566899999994 44553
Q ss_pred -CCCcEEEEECC-CCceeEEec----ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC-CCcEE--EEEe--cCCCCe
Q 005913 483 -HDRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMI 550 (670)
Q Consensus 483 -~dg~v~lwd~~-~~~~~~~~~----~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~I 550 (670)
.++++.+|+++ .++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++.. ..+. .|...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 455444333 24567999999999999888764 6799999998 77653 2333 235678
Q ss_pred EEEEEcCCCCEEEEEEC-CCeEEEEeCC--CCeee---EEee-------CCCc------ceEEEE-EcCCCCEEEEEECC
Q 005913 551 LSLAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV---TPLM-------GHTS------CVWTLA-YSCEGSLLASGSAD 610 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~-dg~I~iwDl~--~~~~~---~~~~-------~h~~------~V~sl~-~s~~g~~l~sgs~D 610 (670)
..++|+|+|++|++++. ++.|.+|++. +++.. ..+. +|.. .+..++ |+|||++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 7899999765 56542 1222 1222 588999 99999988877643
Q ss_pred -C-----cEEEEeCCCCccccccccccCCccccccc-ccCCCCCCeEEEEEec---CCcEEEEeeCC
Q 005913 611 -C-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSR---RNLLFAAGALS 667 (670)
Q Consensus 611 -g-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~fs~---~~~~La~gs~d 667 (670)
+ +|.+|++...... ..+. ........+..++|+| +|++|++++.+
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~------------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSI------------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCE------------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred CCCCCCCeEEEEEECCCCCE------------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 2 8999999632111 0011 1222334466789999 79999888765
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=7.3e-18 Score=193.31 Aligned_cols=276 Identities=13% Similarity=0.023 Sum_probs=190.4
Q ss_pred eecCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 347 FINTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g--~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
+..|...|.+++|++++-+++.+ ..++...||.....+. ...+..|...+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~ 70 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNV 70 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCccc
Confidence 34566789999999887777776 5588899998632111 11222232222
Q ss_pred E---------EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--CCceeEEeeC-----CCccEeEEEEecCCCEEEEEECC
Q 005913 425 Y---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 425 ~---------~l~~s--p~~~~-L~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
. ...|+ |||+. |+.++. +..|++|++. +......+.. |...+.+++|+|||+.|++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 71 RNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp CCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred cccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence 2 34455 99998 776654 5667777765 2034455555 67788999999999999999877
Q ss_pred ----------CcEEEEECCC------CceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCC--------cEEEEECC-CC-
Q 005913 485 ----------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDK--------TVRLWDVS-SG- 537 (670)
Q Consensus 485 ----------g~v~lwd~~~------~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg--------~I~iwd~~-~~- 537 (670)
..|++||+.+ +.. ..+. .+...+..++|+|||++|+.++.++ .|++||+. ++
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999988 544 4555 5567788899999999999887553 79999998 57
Q ss_pred --cEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCCCeeeEEeeCCCcc--------eEEEEEcCCCCEEE
Q 005913 538 --ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSC--------VWTLAYSCEGSLLA 605 (670)
Q Consensus 538 --~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg--~I~iwDl~~~~~~~~~~~h~~~--------V~sl~~s~~g~~l~ 605 (670)
+......+|...+..++|+|||+++++++.+| .|.+||+.+++.......+... +.+++|+|++.+++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 45555555678899999999999888888888 7777787677654433333222 56789999999999
Q ss_pred EEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913 606 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL 666 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~fs~~~~~La~gs~ 666 (670)
+++. +.++||.+..... .+..+..+...+..+ +++.+..++++++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~--------------~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~ 356 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESG--------------ELVDAAGPWTEWAATLTVSGTRAVGVAASP 356 (662)
T ss_dssp EEBS-SSCEEEEEETTTT--------------EEEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred EEEc-CccEEEEEECCCC--------------cEEEecCCCCeEEEEEecCCCEEEEEEcCC
Confidence 9999 9999995543211 122333445556666 55555445555443
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=5.5e-17 Score=169.71 Aligned_cols=239 Identities=14% Similarity=0.134 Sum_probs=184.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913 352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg------------------------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (670)
+.+.+++++|+|++++++..++ .|.+||..+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------------------------- 78 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN------------------------- 78 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------
Confidence 5699999999999999988774 455555432
Q ss_pred CCCccceeee-ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---------eCCCccEeEEEEec-CC
Q 005913 408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG 475 (670)
Q Consensus 408 ~~~~~~~~~~-~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~l~~sp-~g 475 (670)
....... .++-....+++++|+|+++++.+.++.|++|+..... .+..+ .++-....+++++| ++
T Consensus 79 ---g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 79 ---AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ---CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ---CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 1111222 1344678999999999988888889999999987542 45544 23444688999999 78
Q ss_pred CEEEEEE-CCCcEEEEECCCCceeEEecc----------cCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913 476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 476 ~~l~s~s-~dg~v~lwd~~~~~~~~~~~~----------~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (670)
..+++.+ .++.|++|+ ..+..+..+.. +......++++|+ ++++++...++.|++||..+++.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 8888876 689999999 45666666642 3344889999998 777777778899999999989998887
Q ss_pred e--cCCCCeEEEEEcCCCCEEEEE-------ECCCeEEEEeCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCC
Q 005913 544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 544 ~--~h~~~I~~l~~sp~g~~l~sg-------~~dg~I~iwDl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg 611 (670)
. .+...+.+++|+| |..+++. ..+..|++||..+++.+..+. ++...+.+++++|+|.++++...++
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 4 3556789999999 4444433 344589999999999988873 5667899999999999999999999
Q ss_pred cEEEEeCCC
Q 005913 612 TVKLWDVTT 620 (670)
Q Consensus 612 ~I~iwd~~~ 620 (670)
.|++|++..
T Consensus 314 ~I~~~~~~~ 322 (329)
T 3fvz_A 314 TVWKFTLTE 322 (329)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEeCCc
Confidence 999999764
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=2.4e-16 Score=160.79 Aligned_cols=242 Identities=10% Similarity=0.187 Sum_probs=181.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE-c
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s 430 (670)
..+.+++++++++++++...++.|.+|+.... ...... ......+|...+.++++ .
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~----------------------~~~~~~~~~~~p~~i~~~~ 86 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFG----------------------ECGKRDSQLLYPNRVAVVR 86 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEEC----------------------CBSSSTTCBSSEEEEEEET
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEec----------------------ccCCCcccccCceEEEEEc
Confidence 45899999999999998888999999997631 100000 00000134567899999 4
Q ss_pred CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--ccCC
Q 005913 431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS 506 (670)
Q Consensus 431 p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~~ 506 (670)
+++.++++... ++.|++|+ .++..+..+.. +...+.+++++|+|..+++...++.|.+||.+ ++.+..+. .+..
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE 164 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence 66766666543 88999999 45666655543 34568999999999988887788999999965 45555553 4556
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCC-eEEEEeCCCCeeeE
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT 583 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg-~I~iwDl~~~~~~~ 583 (670)
.+.+++++|+++++++.+.++.|++||. .++.+..+..+ ...+..++++|+|+++++...++ .|.+||. +++.+.
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~ 242 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS 242 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence 7899999999998888788999999997 56666666543 35789999999999888888776 9999995 566676
Q ss_pred EeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 584 ~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.+..+. ..+.+++++|+|+++++ +.|++|++|++...
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 666543 34789999999987777 67999999998654
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=1.4e-16 Score=166.92 Aligned_cols=249 Identities=10% Similarity=0.093 Sum_probs=174.2
Q ss_pred CEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913 353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~---------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (670)
.+..+.+ ||+++|... .++.|.+|++.+. ....+ ..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-----------------------------~~~~l----~~ 60 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-----------------------------ARRFI----EN 60 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-----------------------------CEEEE----ES
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-----------------------------ceEEc----cc
Confidence 4667777 888887642 2567888887641 11122 56
Q ss_pred EEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--------------
Q 005913 424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-------------- 484 (670)
Q Consensus 424 V~~l~~sp~~~~L~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-------------- 484 (670)
+.+++|||||+.|+.++.+ + .|++|++.+++.......+ . +..+.|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 7889999999999887654 3 4888898877665554443 3 9999999999999888743
Q ss_pred -------------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-------cEEEEECCCCcEEEEEe
Q 005913 485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI 544 (670)
Q Consensus 485 -------------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~ 544 (670)
..|++||+.+++.+..+.. . .+..++|+|+| ++++++.++ ...+|.+.+++.. .+.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~ 214 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMF 214 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eec
Confidence 5799999998877455554 3 88899999999 777776542 3344433355544 344
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEeCCCCeeeEEeeCCCcceEE-EEEcCCCCEEEEEECCCcEEE
Q 005913 545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 545 ~h~~~I~~l~~sp~g~~l~sg~~d--------g~I~iwDl~~~~~~~~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~i 615 (670)
.+ ..+.++ +|+|++|+.++.+ ..|.+|| +++.......|...+.. +.|+ ++ ++++++.++.++|
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 44 555554 9999998887754 4788888 56554444566778886 9999 88 9999999999999
Q ss_pred EeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 616 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 616 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
| +..+.. ..+..+...|.+++|+| .++++++.++
T Consensus 288 ~-~~~g~~----------------~~~~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 288 Y-IWDGEI----------------KPIAKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp E-EESSSE----------------EEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred E-EcCCce----------------EEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 9 873211 11112356789999999 5666655544
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=1.2e-16 Score=166.61 Aligned_cols=269 Identities=12% Similarity=0.066 Sum_probs=193.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|.++.|++++..++....++.++.|.- .....+..+...+.+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR 54 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence 35778888888887777777888888831 23344556667789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEec--ccC
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL 505 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~~~~~~~~~~--~~~ 505 (670)
++++++++..++.|.+||..+++.......+...+.+++|+|+|.+++++..+ +.|.+||.+++.....+. .+.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 99988888889999999998877655544566789999999999888777666 689999998876554443 244
Q ss_pred CCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCC
Q 005913 506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS 578 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~ 578 (670)
..+.+++++|+|+++++... .+.|..||..+++..... .+...+..++|+|+|+.|+.+ +.++.|.+||+.+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 57899999999988776653 356777776665554333 334557899999999866554 5678999999964
Q ss_pred -CeeeEE--------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC----CC
Q 005913 579 -GRCVTP--------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP----TK 645 (670)
Q Consensus 579 -~~~~~~--------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 645 (670)
+..+.. +.++ ..+..++++++|+++++...++.|.+||... ..... + ..+ .+
T Consensus 214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~------------~-~~~~~~~g~ 278 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQ------------I-LIPGRDEGH 278 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEE------------E-ECTTGGGTC
T ss_pred CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEE------------E-EcCCCcccc
Confidence 332221 1122 4678899999999888888889999999743 22110 1 111 11
Q ss_pred CCCeEEEEEecCCcEEEEeeCC
Q 005913 646 STPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~gs~d 667 (670)
...+.+++|+|++..|.+++.+
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEEC
T ss_pred ccCcceEEECCCCCEEEEEeCc
Confidence 2258899999998666655544
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=2.7e-17 Score=191.30 Aligned_cols=197 Identities=12% Similarity=0.194 Sum_probs=152.7
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc-----EeEEEEecCCCEEEEEECC---------CcE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA 487 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~l~~sp~g~~l~s~s~d---------g~v 487 (670)
....++.|+|++.+++++ |++|++||+.++++...+.+|... ..++.|||||++++.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345678999999988886 899999999999988888877643 2447899999999999876 566
Q ss_pred EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCe----------------
Q 005913 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMI---------------- 550 (670)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I---------------- 550 (670)
.+||+.+++... +..|...+..++|+|||+.|+.+ .++.|++||+.+++..+... ++...+
T Consensus 95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 799999987543 56677889999999999999988 57899999999887655322 222222
Q ss_pred -EEEEEcCCCCEEEEEECCC------------------------------------eEEEEeCCC---Ce--eeEEee--
Q 005913 551 -LSLAMSPDGRYMASGDEDG------------------------------------TIMMWDLAS---GR--CVTPLM-- 586 (670)
Q Consensus 551 -~~l~~sp~g~~l~sg~~dg------------------------------------~I~iwDl~~---~~--~~~~~~-- 586 (670)
..+.|||||+.||.++.|. .|++||+.+ +. ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3589999999999875321 588999988 73 223333
Q ss_pred ----CCCcceEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCc
Q 005913 587 ----GHTSCVWTLAYSCEGSLLASGSA----DCTVKLWDVTTST 622 (670)
Q Consensus 587 ----~h~~~V~sl~~s~~g~~l~sgs~----Dg~I~iwd~~~~~ 622 (670)
+|...+..++|+|||+.++.... +..|.+||+.++.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 37788999999999997666543 3379999998865
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=7.8e-16 Score=160.90 Aligned_cols=234 Identities=15% Similarity=0.188 Sum_probs=180.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceeEEee-CCCccEeEEEEecCC
Q 005913 421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG 475 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g 475 (670)
-+.+.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888877 479999998888766554 344578899999999
Q ss_pred CEEEEEECCCcEEEEECCCCc-eeEEe---------cccCCCeeEEEEcC-CCCEEEEEE-cCCcEEEEECCCCcEEEEE
Q 005913 476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 476 ~~l~s~s~dg~v~lwd~~~~~-~~~~~---------~~~~~~v~~v~~~p-~~~~l~tgs-~dg~I~iwd~~~~~~~~~~ 543 (670)
..+++.+.++.|++|+.+... .+..+ .++......++++| +++.+++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 34555789999999 788888886 699999999 677777776
Q ss_pred ecCC----------CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEE---
Q 005913 544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG--- 607 (670)
Q Consensus 544 ~~h~----------~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sg--- 607 (670)
.... .....++++|+ |.++++...++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 4322 33889999998 7777777889999999999899888874 4557789999999 4333333
Q ss_pred ----ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 608 ----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 608 ----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
..+++|++|+..++...... .....+...+.+++|+|+|.++++...++
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~------------~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVF------------KPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEE------------CCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred EeccCCCcEEEEEEcCCCeEEEEE------------cCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 34558999998876543211 11134556689999999998888776655
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=8.5e-16 Score=162.90 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=168.6
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913 362 DGSLVAGGF------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (670)
Q Consensus 362 d~~~La~g~------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (670)
+++++.+.. .|+.|.+||..+. +....+..+..+ .++|+|++++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~----------------------------~~~~~i~~g~~p--~i~~spdg~~ 63 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG----------------------------KFLGMVPTAFNG--HVQVSNDGKK 63 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC----------------------------CEEEEEECCEEE--EEEECTTSSE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC----------------------------eEEEEecCCCCC--ceEECCCCCE
Confidence 455555543 3679999997642 122334444455 8999999999
Q ss_pred EEEEe----------CCCeEEEEeCCCCceeEEeeCC------CccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCce
Q 005913 436 ILSSS----------ADTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQP 497 (670)
Q Consensus 436 L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~ 497 (670)
+++++ .+++|.+||+.+.+.+..+... ......++++|+|++++++.. +++|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 99886 3678999999988887776532 234678999999999998874 58999999999887
Q ss_pred eEE-ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCC-CcEE----------------------------------
Q 005913 498 LRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECV---------------------------------- 540 (670)
Q Consensus 498 ~~~-~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~---------------------------------- 540 (670)
+.. +... . ...+.+.|++ ..+++.+.||.+.+|+... ++..
T Consensus 144 ~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (361)
T 2oiz_A 144 VEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYG 221 (361)
T ss_dssp EEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTS
T ss_pred EEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCC
Confidence 776 4321 1 1112333433 3334444444444444322 2211
Q ss_pred ---------------EEEec------CC----CCeEEEEEcCCCCEEEEEEC-----------CCeEEEEeCCCCeeeEE
Q 005913 541 ---------------RIFIG------HR----SMILSLAMSPDGRYMASGDE-----------DGTIMMWDLASGRCVTP 584 (670)
Q Consensus 541 ---------------~~~~~------h~----~~I~~l~~sp~g~~l~sg~~-----------dg~I~iwDl~~~~~~~~ 584 (670)
..+.. +. .....++|+|+++.++++.. .+.|.+||+.+++.+.+
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 11100 00 01112789999888777643 35899999999999999
Q ss_pred eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659 (670)
Q Consensus 585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~ 659 (670)
+..+. +.+++|+|+|++|++++. ++|.+||..++.. ..+.++.........++|+|+|.
T Consensus 302 i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP-------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC-------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc-------------eeeEEeccCCCCcEEEEecCCCC
Confidence 98877 899999999999998887 9999999988611 12344444455678899999885
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=1.7e-15 Score=155.41 Aligned_cols=237 Identities=12% Similarity=0.051 Sum_probs=177.1
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+........+++|+|+++ +++++..++.|..|+..+. ...+..+...+.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~ 72 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN 72 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence 344556688999999998 7888889999999997641 233445667899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCEEEEEEC-----------------C
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D 484 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~-----------------d 484 (670)
+++++|+|+++++...++.|.+||..+++........ ...+.+++++|+|.++++.+. .
T Consensus 73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 9999999998887777789999999777654433221 224678999999998887321 2
Q ss_pred CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcE---EEEEecCCCCeEEEEEcCCCC
Q 005913 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~---~~~~~~h~~~I~~l~~sp~g~ 560 (670)
+.|..++.. + .+..+..+......++|+|+++.+++.+.++.|++||+. ++.. ...+..+.+.+.+++++++|+
T Consensus 153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 455555554 3 344455666778999999999999777778999999997 5554 334433455678899999998
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE-cCCCCEEEEEECCCcEEEEeCCC
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~-s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +..++..+
T Consensus 231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 76666 8899999986 778888887777 899999 58999899888764 33444433
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=2.7e-16 Score=180.23 Aligned_cols=201 Identities=11% Similarity=0.072 Sum_probs=149.8
Q ss_pred CccCEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCC-----ceeEEee-CCCccEeEEEEecCCCEEEEEEC
Q 005913 420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~ 483 (670)
|...+.+++|+|||+.|++++.+ .+|++||+.+. .....+. .+...+..++|+|||++|+.++.
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence 66788999999999999988877 58999999872 3344555 55667889999999999998875
Q ss_pred CC--------cEEEEECC-CC---ceeEEecccCCCeeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEEecCCCC
Q 005913 484 DR--------TARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM 549 (670)
Q Consensus 484 dg--------~v~lwd~~-~~---~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~ 549 (670)
++ .|++||++ ++ +......+|...+..++|+|+|+++++++.++ .|++||+.+++.......+...
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence 53 79999998 56 44455555678899999999999888887788 6777777777765544333222
Q ss_pred --------eEEEEEcCCCCEEEEEECCCeEEEE--eCCCCeeeEEeeCCCcceEEE-EEcCCCCEEEEEECCCc--EEEE
Q 005913 550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL-AYSCEGSLLASGSADCT--VKLW 616 (670)
Q Consensus 550 --------I~~l~~sp~g~~l~sg~~dg~I~iw--Dl~~~~~~~~~~~h~~~V~sl-~~s~~g~~l~sgs~Dg~--I~iw 616 (670)
+.+++|+|+++++++++. +.+++| |+.++. +..+..|...+..+ +++.+.-++++++.+.. |.+|
T Consensus 288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 567899999999999998 999999 655555 67777788778777 55544444555566654 4455
Q ss_pred eCCCCc
Q 005913 617 DVTTST 622 (670)
Q Consensus 617 d~~~~~ 622 (670)
|+.++.
T Consensus 366 d~~~g~ 371 (662)
T 3azo_A 366 DTVTGR 371 (662)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 655554
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=9.8e-16 Score=160.50 Aligned_cols=223 Identities=12% Similarity=0.089 Sum_probs=159.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCC---Cc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~d---g~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
..+.+++|||||++||.++.+ +. |.+|++.+. .. ..+..+.. +.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g----------------------------~~-~~l~~~~~-~~~ 108 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL----------------------------SS-KKILEAKN-IRS 108 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT----------------------------EE-EEEEEESE-EEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC----------------------------ce-EEEEcCCC-ccc
Confidence 468899999999999987654 34 666666531 11 22222334 999
Q ss_pred EEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE
Q 005913 427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479 (670)
Q Consensus 427 l~~sp~~~~L~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 479 (670)
++|+|+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 9999999998887642 5799999998876344444 3 78899999999 777
Q ss_pred EEECCC-------cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEe
Q 005913 480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI 544 (670)
Q Consensus 480 s~s~dg-------~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~ 544 (670)
+++.++ ...+|.+++++ ...+..+ ..+.++ +|+|++|+.++.+ ..|++|| +++......
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 776542 34555544444 3444444 445444 9999999887754 3688888 666655555
Q ss_pred cCCCCeEE-EEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcE-EEEeCC
Q 005913 545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV-KLWDVT 619 (670)
Q Consensus 545 ~h~~~I~~-l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I-~iwd~~ 619 (670)
.+...+.. +.|+ +| ++++++.++.+++| +.+++. ..+..+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 56677886 9999 88 89999999999999 876654 44445678899999999 688888877765 777775
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=4.8e-14 Score=143.75 Aligned_cols=271 Identities=10% Similarity=0.044 Sum_probs=195.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+......+.+++++++|++.++...++.|.+|+... .. .......+...+.
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~---------------------------~~~~~~~~~~~~~ 60 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI---------------------------TEYPLPTPDAKVM 60 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE---------------------------EEEECSSTTCCEE
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce---------------------------EEecCCcccCcee
Confidence 3444456799999999999888776688999998651 10 0001112346789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ec
Q 005913 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MA 502 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~ 502 (670)
++++++++.+.++...++.|..|+.. +. ...+. .....+.++++.++|..+++...++.|..||. +++.... ..
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence 99999999988887778899999986 33 22232 24557889999999988887777889999998 4443332 23
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
.+...+.++++.++++.+++...++.|..||. +++.... ...+...+.+++++++|.++++...++.|.+||. ++..
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 34567899999999988877777789999998 6765543 2234456889999999997777767889999999 6654
Q ss_pred eEE-eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913 582 VTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660 (670)
Q Consensus 582 ~~~-~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~ 660 (670)
... ...+...+.+++++++|+++++...++.|.+||.. +. .. ....+.....+.++++ ++|.+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~-------------~~~~~~~~~~~~~i~~-~~g~l 279 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IE-------------EYPIQIKSAEPHGICF-DGETI 279 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EE-------------EEECSSSSCCEEEEEE-CSSCE
T ss_pred EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eE-------------EEeCCCCCCccceEEe-cCCCE
Confidence 322 23345678999999999977777678899999973 21 10 0112233456899999 88887
Q ss_pred EEEee
Q 005913 661 FAAGA 665 (670)
Q Consensus 661 La~gs 665 (670)
.++..
T Consensus 280 ~v~~~ 284 (299)
T 2z2n_A 280 WFAME 284 (299)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 77654
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=2.9e-16 Score=167.16 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=159.4
Q ss_pred ceeeeecCccCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913 413 SYTLYQGHSGPVYS-----ASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (670)
Q Consensus 413 ~~~~~~~h~~~V~~-----l~~sp~~~~L~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 484 (670)
....+..|...+.. .+|+|||++|+.++. +| .|.+||+.+++......++...+..+.|+|+|+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 44556666666665 789999999998887 66 48889999888777777777666678899999999999999
Q ss_pred CcEEEEECCCCceeEEecccCCCeeEEE--EcCCCCEEEEEE----------------------cCCcEEEEECCCCcEE
Q 005913 485 RTARIWSMDRIQPLRIMAGHLSDVDCVR--WHINCNYIATGS----------------------SDKTVRLWDVSSGECV 540 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~--~~p~~~~l~tgs----------------------~dg~I~iwd~~~~~~~ 540 (670)
+.|++||+.+++.......+...+.... ++|++.+++... .+..|++||+.+++..
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 9999999999988777766655554444 489999887532 3467999999998765
Q ss_pred EEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEEC-C
Q 005913 541 RIFIGHRSMILSLAMSP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSA-D 610 (670)
Q Consensus 541 ~~~~~h~~~I~~l~~sp-~g~~l~sg~~d------g~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~-D 610 (670)
.. ..+...+..++|+| +|+.|+.+..+ ..|.++|...+.. ..+..+. ..+..+.|+|||+.|+..+. +
T Consensus 182 ~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 182 VI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred Ee-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 54 45667799999999 99999887753 3788888766543 3444444 35788999999997765443 2
Q ss_pred C----cEEEEeCCCCcc
Q 005913 611 C----TVKLWDVTTSTK 623 (670)
Q Consensus 611 g----~I~iwd~~~~~~ 623 (670)
+ .|++||+.++..
T Consensus 260 ~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN 276 (388)
T ss_dssp TCCCEEEEEECTTTCCE
T ss_pred CCCcceEEEEecCCCce
Confidence 2 399999988753
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=1.2e-15 Score=176.48 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=178.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+..++|||||++||.+..++ .|++||+.+.. ...... ....+.++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----------------------------~~~~~~-~~~~~~~~ 176 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----------------------------ELPDVL-ERVKFSCM 176 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----------------------------EEEEEE-EEECSCCE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----------------------------CCcccc-cCcccceE
Confidence 488999999999999776543 89999987521 111111 11236679
Q ss_pred EEcCCCCEEEEEeCCCe----------------EEEEeCCCCce--eEEeeC--CCccEeEEEEecCCCEEEEEEC----
Q 005913 428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH---- 483 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~g~~l~s~s~---- 483 (670)
+|+|||+.|+.++.++. |++|++.++.. ...+.. |...+..+.|+|+|++++.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 99999999999888766 99999988763 233443 4555789999999999988765
Q ss_pred -CCcEEEEECCC------Cc-eeEEecccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCc--EEEEEecCCC-
Q 005913 484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS- 548 (670)
Q Consensus 484 -dg~v~lwd~~~------~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~--~~~~~~~h~~- 548 (670)
+..|++||+.+ +. ....+..+...+.. .|+|+|..|+..+.. +.|.+||+.++. ....+..|..
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 56899999976 43 45666666666655 588999988876653 369999998774 2344445544
Q ss_pred -CeEEEEEcCCCCEEEEEECCCe--EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCC
Q 005913 549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTS 621 (670)
Q Consensus 549 -~I~~l~~sp~g~~l~sg~~dg~--I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s---~Dg~I~iwd~~~~ 621 (670)
.+..++|++++.++++...++. |.+||+.+|+.+..+..+.+.|.+++++|++..++.. + ..++|.+||+.++
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 6888999988888888888884 6677887888778888888889999999998766533 3 3478999999876
Q ss_pred c
Q 005913 622 T 622 (670)
Q Consensus 622 ~ 622 (670)
.
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 5
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=7.4e-15 Score=149.64 Aligned_cols=231 Identities=11% Similarity=0.174 Sum_probs=172.2
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee------CCCccEeEEEEe-cCCCEEEEEEC-CCcEEEE
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQFN-PQGHYFASSSH-DRTARIW 490 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~l~~s-p~g~~l~s~s~-dg~v~lw 490 (670)
++-..+.+++++++++++++.+.++.|.+||.. +..+..+. ++...+.++++. +++..+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 55555553 234568899995 67766665543 8899999
Q ss_pred ECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 005913 491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 491 d~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
| .+++.+..+. .+...+.+++++|+|+.+++...++.|++||. .++.+..+. .+...+.+++++|+|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 4566666654 34567899999999998888778899999996 466666664 34456899999999998888888
Q ss_pred CCeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCC-cEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADC-TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
++.|++||. .++.+..+..+ ...+.+++++++|+++++...++ .|.+|+... .... .+.. ..
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~------------~~~~-~~ 248 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLIS------------ALES-KV 248 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEE------------EEEE-SS
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEE------------EEcc-cC
Confidence 999999997 55666666443 36789999999999998888886 999999543 2111 0111 11
Q ss_pred CCCCeEEEEEecCCcEEEEeeCCC
Q 005913 645 KSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
....+.+++|+|+|.++++ +.++
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~ 271 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDY 271 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTT
T ss_pred CCCcceeEEECCCCcEEEE-CCCC
Confidence 2234789999999998877 4444
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=3.4e-15 Score=150.42 Aligned_cols=240 Identities=9% Similarity=0.020 Sum_probs=175.1
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
...+++++++|++++ +.+.++.|.+|+..+... ......+...+.++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG 76 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence 678999999999777 546788999998653110 000112234567899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~ 510 (670)
+++++++.. ++.|.+||...... ..+. .....+.+++++++|..+++...++.|.+|+..+.............+.+
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG 154 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence 999666655 88999999876543 3332 23356889999999998777777889999987655443333334456889
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCc
Q 005913 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590 (670)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~ 590 (670)
++++++|+.+++...++.|.+||...+........+...+.+++++++|.++++...++.|.+||............+..
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence 99999999777777788999999887765543333446789999999998777777788999999876544332223335
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
.+.+++++++|+++++...++.|+++++....
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 78999999999999999999999999987643
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=6.4e-15 Score=151.10 Aligned_cols=233 Identities=16% Similarity=0.062 Sum_probs=173.7
Q ss_pred ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
....+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++|..+++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 3445556677788999999998 7778888999999999876 666777778899999999999877777778999999
Q ss_pred CCCCceeEEeccc----CCCeeEEEEcCCCCEEEEE----Ec-------------CCcEEEEECCCCcEEEEEecCCCCe
Q 005913 492 MDRIQPLRIMAGH----LSDVDCVRWHINCNYIATG----SS-------------DKTVRLWDVSSGECVRIFIGHRSMI 550 (670)
Q Consensus 492 ~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~tg----s~-------------dg~I~iwd~~~~~~~~~~~~h~~~I 550 (670)
..+++........ ...+..++++|+|+++++. +. .+.|..++.. ++ +..+..+....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~ 174 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP 174 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence 9877655443321 2356789999999988873 31 3456666655 44 34455666778
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCC-CCee---eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913 551 LSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~---~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~ 626 (670)
..++|+|+|+.+++.+.++.|.+||+. ++.. ...+..+.+.+.+++++++|+++++. ++.|.+|+... .
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~---- 247 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-D---- 247 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-C----
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-C----
Confidence 999999999999777788999999987 5544 23333345667889999999977766 88999999753 2
Q ss_pred cccccCCcccccccccCCCCCCeEEEEE-ecCCcEEEEeeCCC
Q 005913 627 TEEKSGTNRLRSLKTLPTKSTPVYSLQF-SRRNLLFAAGALSK 668 (670)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~f-s~~~~~La~gs~dg 668 (670)
.+..+..+.. +.+++| +|++..|.+++.++
T Consensus 248 -----------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 248 -----------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp -----------EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred -----------EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 1233334444 889999 58988888877654
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=6.4e-14 Score=145.92 Aligned_cols=238 Identities=10% Similarity=0.060 Sum_probs=171.7
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (670)
Q Consensus 343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (670)
....+..+...+.+++|+++|++++++..++.|.+|+..+.. .......+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~ 87 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA 87 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence 344556666778999999999988888889999999976411 1111224567
Q ss_pred CEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEEC------CCcEEEE
Q 005913 423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW 490 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~------dg~v~lw 490 (670)
.+.+++|+|++++++++..+ +.|.+||..++.....+. .+...+.++.++|+|..+++... .+.|..|
T Consensus 88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 89999999999988877766 689999998776543333 24457899999999987776653 2556666
Q ss_pred ECCCCceeEEecccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC-CcEEEE-----E---ecCCCCeEEEEEcCCCC
Q 005913 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI-----F---IGHRSMILSLAMSPDGR 560 (670)
Q Consensus 491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~-~~~~~~-----~---~~h~~~I~~l~~sp~g~ 560 (670)
+.++++... +..+...+..++|+|++++++++ +.++.|.+||+.+ +..+.. + .++ ..+..++++++|+
T Consensus 168 ~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~ 245 (333)
T 2dg1_A 168 SPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN 245 (333)
T ss_dssp CTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred eCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence 665544433 33344568899999999866554 4578999999964 333221 1 122 3678899999999
Q ss_pred EEEEEECCCeEEEEeCCCCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEECCC
Q 005913 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADC 611 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~Dg 611 (670)
++++...++.|.+||. .++.+..+..+.. .+.+++|+|++..|+.++.++
T Consensus 246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8888888899999998 5666666654443 689999999987776665553
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=1.3e-14 Score=167.94 Aligned_cols=229 Identities=11% Similarity=0.033 Sum_probs=166.2
Q ss_pred cCccCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc-------
Q 005913 419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT------- 486 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~------- 486 (670)
+|...+.+++|||||++|+.++.++ +|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555788999999999998766543 8999999998876533222 23678999999999999988766
Q ss_pred ---------EEEEECCCCcee--EEecc--cCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCC------Cc-EEE
Q 005913 487 ---------ARIWSMDRIQPL--RIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR 541 (670)
Q Consensus 487 ---------v~lwd~~~~~~~--~~~~~--~~~~v~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~------~~-~~~ 541 (670)
|++|++.+++.. ..+.. |...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999887632 33333 4455789999999999998775 56899999986 53 455
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCe--eeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCc-
Q 005913 542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGR--CVTPLMGHTS--CVWTLAYSCEGSLLASGSADCT- 612 (670)
Q Consensus 542 ~~~~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~~--~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~- 612 (670)
.+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+.+++|++++.+++++..|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 66666666655 588999988776653 469999998774 2345555543 6888999988888999998985
Q ss_pred -EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 613 -VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 613 -I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
|.+|++.++.. +..+..+...|..++++|++..++..
T Consensus 360 ~l~~~~~~~g~~---------------~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 360 TLQLHDLATGAL---------------LKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EEEEEETTTCCE---------------EEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred EEEEEECCCCCE---------------EEecCCCCceEEEEecCCCCCEEEEE
Confidence 45566644432 12223335568889999988655544
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=1e-15 Score=162.96 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=160.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (670)
++.|||||++|+.++.++.|.+|++.+............ .......+.......... .....+.|+|+++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~------~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVG------IEILKRDWQPLTSW 155 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEE------EEEEGGGCCCCCSH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCcccc------ccccccccCCCCcc
Confidence 478999999999999999999999875332111110000 000000000000000000 00001457888887
Q ss_pred EEEE-----eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECC------CcEEEEECCCCceeEEecc
Q 005913 436 ILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 436 L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d------g~v~lwd~~~~~~~~~~~~ 503 (670)
++.+ ..+..|++||+.+++..... .+...+..+.|+| ++..++.++.+ ..|.+|++..+.... +..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~ 233 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKE 233 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSC
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eec
Confidence 7654 45678999999987765544 4566789999999 78877776643 368888987655433 333
Q ss_pred c--CCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEE---------
Q 005913 504 H--LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD--------- 566 (670)
Q Consensus 504 ~--~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~--------- 566 (670)
+ ...+..++|+|+|++|+.++.+ +.|++||+.+++........ + .. +.|+| +|+++++++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeecc
Confidence 3 2357889999999988777654 44999999988765543222 2 33 89999 999888765
Q ss_pred -------CCCeEEEEeCCCCeeeEEeeCCCc-----------ceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913 567 -------EDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGSA-DCTVKLWDVT 619 (670)
Q Consensus 567 -------~dg~I~iwDl~~~~~~~~~~~h~~-----------~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~ 619 (670)
.++.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.++. ++...||.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887643 4444443 2567899999998887764 5665666543
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=3e-14 Score=151.00 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=151.3
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 356 CASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 356 ~l~fs~d~~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.++|||||++++++.. ++.|.+||..+........... ....+.....
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~----------------------~~~~~g~~p~ 111 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP----------------------KRVQGLNYDG 111 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT----------------------TBCCBCCCGG
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc----------------------cccccCCCcc
Confidence 8999999999998862 5679999986532211100000 0000223456
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCC-Ccee--
Q 005913 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDR-IQPL-- 498 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~-~~~~-- 498 (670)
.++|+|+|++|++++. +++|.+||+.+++.+.. +.... .+.+.+.|++ ..+++.+.||.+.+|+++. ++..
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 7899999999998874 58999999999877766 44221 2223444433 3445555555555555432 1111
Q ss_pred -----------------------------------------------EEecc------c----CCCeeEEEEcCCCCEEE
Q 005913 499 -----------------------------------------------RIMAG------H----LSDVDCVRWHINCNYIA 521 (670)
Q Consensus 499 -----------------------------------------------~~~~~------~----~~~v~~v~~~p~~~~l~ 521 (670)
..+.. + ......++|+|+++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 00000 0 00111278899988888
Q ss_pred EEEc-----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--eeeEEeeCC
Q 005913 522 TGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVTPLMGH 588 (670)
Q Consensus 522 tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h 588 (670)
++.. .+.|.+||+.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||..++ +.+..+..+
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~ 346 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA 346 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC
Confidence 7654 3489999999999999998776 899999999999998887 99999999999 999888777
Q ss_pred CcceEEEEEcCCCC
Q 005913 589 TSCVWTLAYSCEGS 602 (670)
Q Consensus 589 ~~~V~sl~~s~~g~ 602 (670)
......++++|+|+
T Consensus 347 G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 347 AEASLQVQFHPVGG 360 (361)
T ss_dssp CSSEEEEEECCCSC
T ss_pred CCCcEEEEecCCCC
Confidence 77788999999985
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=3.8e-15 Score=171.92 Aligned_cols=239 Identities=14% Similarity=0.038 Sum_probs=168.5
Q ss_pred CEEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 353 GLNCASISQDGSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~-----g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+.+++|||||++||. |+.+..|++||+.+..... ...+... ...++
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~~~ 173 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYATP 173 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--cccce
Confidence 5899999999999994 3445689999998632110 0000111 11568
Q ss_pred EEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEee--CCCccEeEEEEecCCCEEEEEECCC----c
Q 005913 428 SFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--GHNYPVWDVQFNPQGHYFASSSHDR----T 486 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg----~ 486 (670)
+|+|||+.|+.++.|.. |++|++.++.. ...+. .|...+.++.|+|+|++++.++.++ .
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 99999999999988776 99999998763 23333 3556788999999999998887666 6
Q ss_pred EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcE---EEEEecC-CCCeEEEEEcCC
Q 005913 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMSPD 558 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~---~~~~~~h-~~~I~~l~~sp~ 558 (670)
|++|+..++. ...+..+...+....| ++|. ++..+. ++.|.+||+.++.. ...+..+ ...+..++|+ +
T Consensus 254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G 329 (695)
T ss_dssp EEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred EEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence 7777665554 4444555566666667 5666 544443 57899999987753 3333333 4568888988 7
Q ss_pred CCEEEEEECCCeEEEEeCC-CCeeeEEeeCC-CcceEEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcc
Q 005913 559 GRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS----ADCTVKLWDVTTSTK 623 (670)
Q Consensus 559 g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs----~Dg~I~iwd~~~~~~ 623 (670)
+.++++...|+..++|.+. ++..+..+..+ .+.|..++++|++..++... ..++|++||+.++..
T Consensus 330 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 330 GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7888889999988888654 46666666655 67788899999987666333 347899999987653
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.3e-13 Score=140.26 Aligned_cols=213 Identities=14% Similarity=0.097 Sum_probs=170.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCCEEEEEe
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~L~s~s 440 (670)
.+++|++++.++.|.+||..+ .+....+..+. ..+.++.++|+|++++ +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t----------------------------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT----------------------------KEIVWEYPLEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT----------------------------TEEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred CCcEEEeeCCCCEEEEEECCC----------------------------CeEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence 468899999999999999754 22334444444 4688899999999888 4
Q ss_pred CCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec------ccCCCeeEEE
Q 005913 441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA------GHLSDVDCVR 512 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~~~~------~~~~~v~~v~ 512 (670)
.++.|..||. +++.+..+..+ ...+.++.+.++|.++++.+. ++.+..+|. +++.+..+. .+......++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 5778999999 78888888865 357889999999999999887 778888886 566666554 1223455677
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT--- 589 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~--- 589 (670)
+.++|+++++.+.++.|..||.. |+.+..+... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..+.
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~ 209 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG 209 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence 88999999999999999999988 9999988765 456678889999999999989999999999999988886432
Q ss_pred ---cceEEEEEcCCCCEEEEEE
Q 005913 590 ---SCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 590 ---~~V~sl~~s~~g~~l~sgs 608 (670)
..+.++...++|+++++..
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccceEcCCCCEEEEec
Confidence 2378888999999888874
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=2.6e-12 Score=130.84 Aligned_cols=270 Identities=10% Similarity=0.025 Sum_probs=192.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.....+.+++++++|++.++...++.|.+|+... ... ...+..+...+.+++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~---------------------------~~~~~~~~~~~~~i~ 68 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RIK---------------------------EFEVPTPDAKVMCLI 68 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE---------------------------EEECSSTTCCEEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ceE---------------------------EEECCCCCCcceeEE
Confidence 3456789999999999888877789999998651 100 001112346788999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCC
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS 506 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~ 506 (670)
+.+++.+.++...++.|..||.. +.... ........+.++++.++|..+++...++.|..|+.+ ++.... +.....
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 99999988877778899999988 54432 222234668899999999888877778899999987 544432 233456
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE-
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP- 584 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~- 584 (670)
.+.++++.++++.+++...++.|..||. +++...... .+...+.+++++++|.+.++....+.|.+||. ++.....
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence 7899999999996666666789999998 665544221 33456899999999987777767788999998 5544332
Q ss_pred eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g 664 (670)
+..+...+.+++++++|+++++...++.|..|+.. +... ....+.....+.+++++++|.+.++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ--------------EYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--------------EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE--------------EEECCccCCccceeEeCCCCCEEEEc
Confidence 33345678999999999977777677899999973 2210 01122234457889999999877665
Q ss_pred e
Q 005913 665 A 665 (670)
Q Consensus 665 s 665 (670)
.
T Consensus 290 ~ 290 (300)
T 2qc5_A 290 K 290 (300)
T ss_dssp S
T ss_pred c
Confidence 4
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=8.6e-14 Score=140.10 Aligned_cols=230 Identities=9% Similarity=0.040 Sum_probs=164.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|..+++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999776 547789999999765543322223335678999999998666555 889999998765443222
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
......+.+++++++|+.+++...++.|.+|+..+.............+.+++++|+|+++++...++.|.+||...+..
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23346789999999999877777788999998766554432223334678999999999777777789999999887665
Q ss_pred eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
......+...+.+++++++|.++++...++.|.+|+....... .........+.+++++++|.++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST---------------VLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE---------------ECCCCSCSCEEEEEECTTCCEE
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce---------------eeccCCCCCceeEEECCCCCEE
Confidence 4433334467899999999988888878899999998653211 0111223568999999999988
Q ss_pred EEeeCCC
Q 005913 662 AAGALSK 668 (670)
Q Consensus 662 a~gs~dg 668 (670)
++...++
T Consensus 249 v~~~~~~ 255 (270)
T 1rwi_B 249 VADRGND 255 (270)
T ss_dssp EEEGGGT
T ss_pred EEECCCC
Confidence 7776554
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=1.8e-14 Score=166.38 Aligned_cols=225 Identities=8% Similarity=-0.040 Sum_probs=156.8
Q ss_pred cCccCEEEEEEcCCCCEEE-----EEeCCCeEEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEECCCc-----
Q 005913 419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT----- 486 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~dg~----- 486 (670)
+|...+.+++|||||++|+ .|+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666799999999999988 33445789999999887641 1121122 67999999999999998876
Q ss_pred --------EEEEECCCCce--eEEec--ccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcEEEEEecCCCCe
Q 005913 487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI 550 (670)
Q Consensus 487 --------v~lwd~~~~~~--~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~I 550 (670)
|++|++.++.. ...+. .+...+.++.|+|+|++|+.++.++ .|++||..++... .+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce
Confidence 99999988763 23333 3446788999999999999887766 7888877666544 444555566
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEeCCCCee--eEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 551 LSLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 551 ~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~--~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
....+ ++|. ++..+. ++.|.+||+.++.. ...+..| ...|.+++|+ ++.++++...|+..+||.+....
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 66666 6666 554443 68999999987753 2333333 4568888998 77889999999998888765311
Q ss_pred cccccccccCCcccccccccCCC-CCCeEEEEEecCCcEEEE
Q 005913 623 KVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~~~La~ 663 (670)
. .+..+..+ ...|..++++|++..++.
T Consensus 352 ~--------------~~~~l~~~~~~~v~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 352 K--------------PVRTVQLPGVGAASNLMGLEDLDDAYY 379 (695)
T ss_dssp C--------------EEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred C--------------eeEEecCCCCeEEEEeecCCCCCEEEE
Confidence 1 01112222 345667777777765553
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=6.1e-13 Score=136.88 Aligned_cols=246 Identities=9% Similarity=0.066 Sum_probs=172.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~-------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
...-....+++|++++.++++ +..++.|.+|+..+...... ......++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------~~~~~~~~ 69 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------------------------CKPEVNGY 69 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE------------------------ECCEETTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE------------------------EecccCCC
Confidence 344456789999999998888 57788999998654211000 00000124
Q ss_pred ccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEE-eeC----CCccEeEEEEecCCCEEEEEECC----------
Q 005913 421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD---------- 484 (670)
Q Consensus 421 ~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~l~~sp~g~~l~s~s~d---------- 484 (670)
...+.+++++++ ++++++.. .+.|.+||.. ++.... ... ....+.+++++++|..+++...+
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 467899999999 66555444 4479999988 554332 221 12358899999999887777655
Q ss_pred -----CcEEEEECCCCceeEEecccCCCeeEEEEc----CCCCEEEEE-EcCCcEEEEECC-CCcE-----EEEEecCC-
Q 005913 485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGEC-----VRIFIGHR- 547 (670)
Q Consensus 485 -----g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~----p~~~~l~tg-s~dg~I~iwd~~-~~~~-----~~~~~~h~- 547 (670)
+.|..|+.+ ++... +..+......++|+ |+++.++++ ..++.|.+||+. +++. ...+..+.
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred ccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 567777765 44433 33344567889999 999766655 467899999986 4542 22233333
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEE-EEEECCCcEEEEeCCCC
Q 005913 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTS 621 (670)
Q Consensus 548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~ 621 (670)
..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++|+.| ++...++.|..|++...
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 567899999999988888888999999998788777777777789999999999955 45556689999998753
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=4.9e-12 Score=128.73 Aligned_cols=254 Identities=6% Similarity=-0.038 Sum_probs=177.8
Q ss_pred ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCC
Q 005913 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410 (670)
Q Consensus 331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (670)
.+..++.. .....+........+.+++++++|.+.++...++.|..|+.... .
T Consensus 37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~------------------------ 89 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--I------------------------ 89 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--E------------------------
T ss_pred cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--E------------------------
Confidence 44444444 33333332234567999999999998888777888999986520 0
Q ss_pred ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (670)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l 489 (670)
...........+.++++.+++.++++...++.|..||. ++.... ....+...+.++++.++|..+++...++.|..
T Consensus 90 --~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 90 --KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp --EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred --EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 00011123457889999999988888777889999998 444332 22334556889999999988777767789999
Q ss_pred EECCCCceeEE-ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 490 WSMDRIQPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 490 wd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
||. +++.... ...+...+.+++++++++.+++...++.|.+||. +++.... ...+...+.+++++++|+++++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 999 5554433 3334566889999999997777666889999999 6664432 2234467899999999997776667
Q ss_pred CCeEEEEeCCCCeeeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 568 DGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++.|..||. ++.. ..+ ..+...+.++++ ++|.++++.+ .+.|..++..+
T Consensus 245 ~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 245 ANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp TTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 899999998 4543 333 344567899999 8888777655 56777777654
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=3e-13 Score=137.55 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=158.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC-CCee
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD 509 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~-~~v~ 509 (670)
.++.|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999988776 4788999999999888 45788999999 788888887643 4688
Q ss_pred EEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
++.+.++|+++++.+. ++.|..+|. +|+.+..+.. +......+++.++|+++++...++.|..||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 8999999999999887 788888885 7887776642 22245567889999999999999999999987 9998
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.++..+ ..+.++...++|+++++++.++.|..+|..+++.....
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 888764 34567888899999999999999999999887765544
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=1.5e-11 Score=137.50 Aligned_cols=284 Identities=9% Similarity=0.021 Sum_probs=193.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
+.....+.++.|||||+++++++.++.|.+||+.... ......+... .....+
T Consensus 193 i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--------------------------~~~v~~i~~G-~~P~~i 245 (567)
T 1qks_A 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--------------------------PTTVAEIKIG-SEARSI 245 (567)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------------------CCEEEEEECC-SEEEEE
T ss_pred EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------CcEeEEEecC-CCCcee
Confidence 3344567899999999999999999999999985100 1122222222 235789
Q ss_pred EEc----CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-----------CccEeEEEEecCCCEEEE-EECCCcEEEE
Q 005913 428 SFS----PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNPQGHYFAS-SSHDRTARIW 490 (670)
Q Consensus 428 ~~s----p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~~sp~g~~l~s-~s~dg~v~lw 490 (670)
+|+ |+|+++++++. +++|.++|..+.+.+..+... ...+..+..++++..++. ...+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 999 69998887664 599999999999888776532 125778888887665444 4566999999
Q ss_pred ECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec-----CCCCeEEEEEcCCCCEE-
Q 005913 491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-----HRSMILSLAMSPDGRYM- 562 (670)
Q Consensus 491 d~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-----h~~~I~~l~~sp~g~~l- 562 (670)
|....+...... .......++.|+|+++++++++ .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..+
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~ 404 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW 404 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence 987754332221 2334567889999999988766 578999999999988776653 32212222 68875544
Q ss_pred EEEE-CCCeEEEEeCCC-------CeeeEEeeCCCcceEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCcc---c
Q 005913 563 ASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-------DCTVKLWDVTTSTK---V 624 (670)
Q Consensus 563 ~sg~-~dg~I~iwDl~~-------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~-------Dg~I~iwd~~~~~~---~ 624 (670)
+++. .++.|.++|..+ .+.+.++......-..+..+|++++|.+... .++|.|+|+.+... .
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 4443 568999999988 6777777755433344678999999988763 35999999987511 0
Q ss_pred cccccccCCccccccc---ccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 625 LKTEEKSGTNRLRSLK---TLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 625 ~~~~~~~~~~~~~~~~---~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
... ....+. .++.....+..+.|+++|..+.++..
T Consensus 485 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 485 PEF-------KTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp CCE-------EEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred CCc-------EEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 000 000011 12223456899999999987776643
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=1.6e-13 Score=159.50 Aligned_cols=238 Identities=15% Similarity=0.064 Sum_probs=166.7
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+..++|||||++||.+..+ ..|++||+.+... .. ...+...+.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~-~~~~~~~~~~~ 214 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LA-DELKWVKFSGL 214 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EE-EEEEEEESCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CC-ccCCCceeccE
Confidence 58899999999999987654 3599999875221 11 11111223578
Q ss_pred EEcCCCCEEEEEeCCCe--------------EEEEeCCCCce--eEEeeCC--CccEeEEEEecCCCEEEEEECCC----
Q 005913 428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKGH--NYPVWDVQFNPQGHYFASSSHDR---- 485 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~h--~~~V~~l~~sp~g~~l~s~s~dg---- 485 (670)
+|+|| +.|+.++.++. |++|++.++.. ...+... ...+.++.|+|+|++++..+.++
T Consensus 215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV 293 (741)
T ss_dssp EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence 99999 99988877654 89999987653 3344433 33588999999999988887554
Q ss_pred -cEEEEECCCC--ceeEEecccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCC--cEEEEEecCCCCeEEEEEc
Q 005913 486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS 556 (670)
Q Consensus 486 -~v~lwd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~--~~~~~~~~h~~~I~~l~~s 556 (670)
.|++||+.++ .+...+..+...+.... +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..++++
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 8999999876 41455555555555554 4899988887764 45999999875 3444444455556778887
Q ss_pred CCCCEEEEEECCCeEEEEeCC-CCeeeEEeeC-CCcceEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCCc
Q 005913 557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTST 622 (670)
Q Consensus 557 p~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sg-s---~Dg~I~iwd~~~~~ 622 (670)
++.++++...||..++|.+. ++..+..+.. +.+.|..++++|++..|+.. + ..++|.+||+.++.
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66778888889987777554 4556666654 36778999999998755533 2 34789999998765
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=2.4e-12 Score=134.31 Aligned_cols=223 Identities=10% Similarity=-0.018 Sum_probs=163.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
....++.+. ++...++...++.|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..+++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 345677775 345555666689999999999998888864 456789999999854444448899999999998877766
Q ss_pred cccC-----CCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC------
Q 005913 502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------ 568 (670)
Q Consensus 502 ~~~~-----~~v~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d------ 568 (670)
.... .....+++ ++..++++. .++.|.+||+.+++.+..+... .....++++|+|++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence 5332 14567777 345555554 4889999999999988877643 345789999999977776654
Q ss_pred ----CeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913 569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP 643 (670)
Q Consensus 569 ----g~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
+.|.+||..+++....+... ......++|+|+++.|+++.. .|.+||..++.... ....+
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-------------~~~~~ 263 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-------------RPFLE 263 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-------------SCSBC
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-------------eeeec
Confidence 79999999999887776543 236789999999998888755 89999987754210 01111
Q ss_pred CCCCCeEEEEEec-CCcEEEEe
Q 005913 644 TKSTPVYSLQFSR-RNLLFAAG 664 (670)
Q Consensus 644 ~~~~~V~~l~fs~-~~~~La~g 664 (670)
.......+++++| ++.++++.
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEEcCCCCeEEEEc
Confidence 2245688999999 56666665
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.4e-12 Score=135.98 Aligned_cols=234 Identities=7% Similarity=-0.075 Sum_probs=168.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
...+.+. ++++.++...++.|.+||..+.. ....+. .......+++++++
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g 95 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE 95 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence 4556664 35555666668999999987522 222222 34668899999988
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCCC-----ccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCC
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS 506 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~ 506 (670)
...++...++.|.+||..+++....+.... .....+++ .++ .+++++ .+++|.+||..+++.+..+... .
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 544444488999999999988776666433 13456777 344 455554 4899999999999888777643 4
Q ss_pred CeeEEEEcCCCCEEEEEEcC----------CcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913 507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwD 575 (670)
....++++|+|++++++..+ +.|.+||..+++....+... ......++|+|+++.|+++.. .|.+||
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 56788999999977776554 78999999999887766532 236889999999999988765 899999
Q ss_pred CCCCeeeEE--eeCCCcceEEEEEcC-CCCEEEEE----ECCCcEEEEeCCCCcc
Q 005913 576 LASGRCVTP--LMGHTSCVWTLAYSC-EGSLLASG----SADCTVKLWDVTTSTK 623 (670)
Q Consensus 576 l~~~~~~~~--~~~h~~~V~sl~~s~-~g~~l~sg----s~Dg~I~iwd~~~~~~ 623 (670)
..+++.... +..+......++++| ++.++++. ..++.|.+||.. ++.
T Consensus 251 ~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 251 VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 988875421 222245688999999 56666666 578999999987 543
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=5.8e-13 Score=154.82 Aligned_cols=226 Identities=13% Similarity=0.028 Sum_probs=156.8
Q ss_pred CccCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc--------
Q 005913 420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~-------- 486 (670)
|...+.+++|||||++|+.++.+ .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999877643 4699999999887543 112222467899999 99998887654
Q ss_pred ------EEEEECCCCce--eEEecc--cCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCC--cEEEEEecCCCC
Q 005913 487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM 549 (670)
Q Consensus 487 ------v~lwd~~~~~~--~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~ 549 (670)
|++|++.++.. ...+.. +...+..+.|+|+|++|+..+.++ .|++||+.++ ++...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999977653 233333 323588999999999999887654 8999999887 424555556555
Q ss_pred eEEEEEcCCCCEEEEEEC----CCeEEEEeCCCC--eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 550 ILSLAMSPDGRYMASGDE----DGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~--~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+.... +|+|+.|+..+. ++.|.+||+.++ .....+..+...+.+++|+ ++.++++...|+..+||.+.....
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55553 589998888775 456999999874 3333344455567778887 667888999999888886652111
Q ss_pred ccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEEE
Q 005913 624 VLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAA 663 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La~ 663 (670)
.+..+.. ....|..++++|++..++.
T Consensus 397 --------------~~~~l~~~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 397 --------------PAGAVSLPGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp --------------EEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred --------------ceeeccCCCCeEEEEeecCCCCCEEEE
Confidence 0112221 2456888999998875553
No 203
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=2.1e-11 Score=136.19 Aligned_cols=266 Identities=11% Similarity=0.077 Sum_probs=184.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
+.+.++++...++.|.+||..+.. ....+. ....+.++.|+|+|+++++++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~ 215 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG 215 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence 344566677788999999987521 222222 223567899999999999999
Q ss_pred CCCeEEEEeCC--CCceeEEeeCCCccEeEEEEe----cCCCEEEEEE-CCCcEEEEECCCCceeEEeccc---------
Q 005913 441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH--------- 504 (670)
Q Consensus 441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~s----p~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~--------- 504 (670)
.|+.|.+||+. +.+.+..+..... ...++|+ |+|+++++++ .++++.++|..+.+++..+...
T Consensus 216 ~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 216 RDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp TTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred CCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 99999999995 7777777775444 5789999 6999888776 4589999999999988876522
Q ss_pred --CCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC
Q 005913 505 --LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG 579 (670)
Q Consensus 505 --~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~ 579 (670)
...+..+..++++..++ ....+|.|.++|..+.+..... ........++.|+|+|++++++. .++.|.++|+.++
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 12577888888766544 4456799999999876433222 22344577899999999887765 6789999999999
Q ss_pred eeeEEeeC-----CCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913 580 RCVTPLMG-----HTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (670)
Q Consensus 580 ~~~~~~~~-----h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 652 (670)
+.+..+.. |.+.-..+ ++|++. .++++. .+++|.++|....... ...+..+.++......-..+
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--------~~~~kvv~~i~~~g~g~~~i 445 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--------DNAWKILDSFPALGGGSLFI 445 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCE
T ss_pred cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--------cccCEEEEEEecCCCCCEEE
Confidence 88766653 43322222 578744 444543 5689999998863211 11123344444433333456
Q ss_pred EEecCCcEEEEee
Q 005913 653 QFSRRNLLFAAGA 665 (670)
Q Consensus 653 ~fs~~~~~La~gs 665 (670)
+++|+++.|.+..
T Consensus 446 ~~~p~~~~l~v~~ 458 (567)
T 1qks_A 446 KTHPNSQYLYVDA 458 (567)
T ss_dssp ECCTTCSEEEEEC
T ss_pred EeCCCCCeEEEec
Confidence 7889888777654
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=6.5e-12 Score=135.22 Aligned_cols=233 Identities=10% Similarity=0.115 Sum_probs=166.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
....++|+++++++++...++.|++|+..+.. ....... ..... ++|+++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~----------------------------~~~~~~~-~~~~~-ia~~~~ 181 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK----------------------------VTTVHPG-FKGGK-PAVTKD 181 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTE----------------------------EEEEEET-CCBCB-CEECTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCE----------------------------EEEeecc-CCCCc-eeEecC
Confidence 57899999999988888888999999986411 1111222 22223 899999
Q ss_pred CCEEEEEeCCC--eEEEEeCCCCceeEEe----eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE----ec
Q 005913 433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA 502 (670)
Q Consensus 433 ~~~L~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~----~~ 502 (670)
++.|+++..++ .|.+|+...+.....+ ......+++++++|++..|+++..++.|+.||..++..... ..
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 99999888766 7889988765543333 21445678999999555566677788999999987653332 22
Q ss_pred ccCCCe--eEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCC---------------CCeEEEEEcCCCCEEEE
Q 005913 503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS 564 (670)
Q Consensus 503 ~~~~~v--~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------------~~I~~l~~sp~g~~l~s 564 (670)
++...- ..++|+|+ +..+++...++.|+.|+.... +..+.++. .....++++|+|+++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 222222 29999995 555556666789999997643 33444432 34789999999997777
Q ss_pred EE-CCCeEEEEeCCCCeeeEEeeCC---------------CcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 565 GD-EDGTIMMWDLASGRCVTPLMGH---------------TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 565 g~-~dg~I~iwDl~~~~~~~~~~~h---------------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
-. .++.|+.||+.++.. ..+.++ -.....++++++|.++++-..++.|+.+++
T Consensus 340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77 789999999877764 334333 135789999999988888888899988875
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=1.3e-11 Score=126.62 Aligned_cols=225 Identities=14% Similarity=0.177 Sum_probs=159.0
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
---+..|+++ +.++++...++.|..|+..+.. ... ......+.++++++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~~-~~~~~~~~~i~~~~ 63 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----------------------------VQR-VTMDAPVSSVALRQ 63 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----------------------------EEE-EECSSCEEEEEEBT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----------------------------EEE-EeCCCceEEEEECC
Confidence 3568899995 5566677778999999976411 111 12346789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEecCCCEEEEEECC---------CcEEEEECCCCcee
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPL 498 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d---------g~v~lwd~~~~~~~ 498 (670)
+|+++++ . ++.|.+||..+++....... ....+.+++++|+|+++++.... ..-.+|.++.....
T Consensus 64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 9995554 4 56799999987765433322 13457899999999976654322 23455555432233
Q ss_pred EEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEEC--CCCcEE--EEE---ecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV--RIF---IGHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~--~~~~~~--~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
..+..+....+.++|+|+++.|+. .+.++.|.+||+ .++... +.+ ..+.+....++++++|++.++....+.
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 333444556789999999987755 455789999987 455432 222 233456889999999998888888899
Q ss_pred EEEEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEEC
Q 005913 571 IMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA 609 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~ 609 (670)
|.+||..+++.+..+..+...+++++|+ |+++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999999999998888887789999998 88877665554
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=8.3e-12 Score=128.35 Aligned_cols=230 Identities=10% Similarity=0.087 Sum_probs=160.8
Q ss_pred ecCccCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceeEEee----CCCccEeEEEEecC-CCEEEEEECCC
Q 005913 418 QGHSGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDR 485 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp~-g~~l~s~s~dg 485 (670)
...-....+++|++++.++++ ++.++.|.+||..+++...... ++...+.+++++++ |..++ ++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCC
Confidence 344456689999999988777 5778899999988776543222 24456889999999 65444 44455
Q ss_pred cEEEEECCCCceeEE-ecc----cCCCeeEEEEcCCCCEEEEEEcC---------------CcEEEEECCCCcEEEEEec
Q 005913 486 TARIWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIG 545 (670)
Q Consensus 486 ~v~lwd~~~~~~~~~-~~~----~~~~v~~v~~~p~~~~l~tgs~d---------------g~I~iwd~~~~~~~~~~~~ 545 (670)
.|.+||.+ ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++.... ..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-cc
Confidence 89999998 654333 221 12458899999999988777655 578888866 554433 33
Q ss_pred CCCCeEEEEEc----CCCCEEEEE-ECCCeEEEEeCC-CCe-----eeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcE
Q 005913 546 HRSMILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTV 613 (670)
Q Consensus 546 h~~~I~~l~~s----p~g~~l~sg-~~dg~I~iwDl~-~~~-----~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I 613 (670)
+......++|+ |+|+.|+.+ ..++.|.+||+. ++. ....+..+. ..+..++++++|+++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 44557889999 999766555 467899999986 454 223344444 567899999999999988889999
Q ss_pred EEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 614 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
.+||..++.. +..+..+...+.+++|+++|..|.+++.
T Consensus 250 ~~~d~~~g~~---------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 250 EVFGPDGGQP---------------KMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEECTTCBSC---------------SEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEcCCCCcE---------------eEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 9999875432 1122233467899999999985555443
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=8.1e-11 Score=119.68 Aligned_cols=235 Identities=6% Similarity=-0.030 Sum_probs=166.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
....+.++++++++++.++...++.|..|+... .. ...........+.++++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~---------------------------~~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GF---------------------------TEYPLPQPDSGPYGITE 111 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-Ce---------------------------EEecCCCCCCCCccceE
Confidence 346799999999999888776788899998652 11 00111122356889999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCCC
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD 507 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~~ 507 (670)
.+++.+.++...++.|..|+.. +.... ........+.++++.++|..+++...++.|..|+. +++.... ...+...
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA 189 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence 9999988887778899999987 54432 22334556889999999997666666789999998 4444332 2234567
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE-Ee
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PL 585 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~-~~ 585 (670)
+.+++++++++..++....+.|.+||. ++..... ...+...+.+++++++|++.++...++.|..||. ++.... .+
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence 899999999987777766778999998 5554443 2234566899999999997776666799999998 454332 22
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
......+.+++++++|+++++.. . .|..++.
T Consensus 268 ~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 268 QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 33446688999999998666655 4 6666664
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=8.4e-13 Score=139.66 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=139.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd 491 (670)
+++.+++++...++++|+.++ +++|++.... ..... .+.. |..++| ++.+++++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 6679865332 12223 3556 999999 89999999 889999999
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|||+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766667777788888877654 38889999999999999888754 34579999999999 7889999999
Q ss_pred EEEeCCCCee--eEEe------e---CCCcceEEEEEcCCCCEEEEEE
Q 005913 572 MMWDLASGRC--VTPL------M---GHTSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 572 ~iwDl~~~~~--~~~~------~---~h~~~V~sl~~s~~g~~l~sgs 608 (670)
++|+...+.. ..++ . +|...|.++.|.+++.++++=+
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999887775 5555 2 4788999999999999888744
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1.4e-12 Score=137.96 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=140.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (670)
.++.+++++...++++|+.++ +++|++.......... . ..... .....+.+ |+.++| +
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~--------------~~~~~-~~~~~lp~-V~~l~f--d 96 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---S--------------TPLTF-KWEKEIPD-VIFVCF--H 96 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---S--------------CCCCC-SEEEECTT-EEEEEE--E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---c--------------ccccc-eEEeeCCC-eeEEEE--C
Confidence 588999999999999998875 5569976421100000 0 00011 12234666 999999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
+.+|+++ .++.|++||+.+.........|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.|++
T Consensus 97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~ 169 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD 169 (388)
T ss_dssp TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence 9999999 8899999999887766667778888988877655 39999999999999999877643 446899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcE--EEEE------e---cCCCCeEEEEEcCCCCEEEEE
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~------~---~h~~~I~~l~~sp~g~~l~sg 565 (670)
|+|+| ++.|..||++++|+...+.. ...+ . +|...|.+|.|.+++.++++=
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999 78899999999999887775 5555 2 367889999999999998873
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.46 E-value=2.1e-11 Score=125.51 Aligned_cols=232 Identities=8% Similarity=0.051 Sum_probs=162.0
Q ss_pred EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
.+...........|+++++ +++++..++.|..|+... ....+..+...+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~ 88 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFT 88 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCcc
Confidence 3444455678899999998 667777889999998632 123344456778
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCEEEE----EEC-------------
Q 005913 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFAS----SSH------------- 483 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s----~s~------------- 483 (670)
.+++++++|+++++...++.|.+|+.. +......... ...+.++++.++|..+++ |..
T Consensus 89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 999999999977666666889999986 4432221111 134678999999998886 332
Q ss_pred CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcE--EEEE-ecCCCCeEEEE
Q 005913 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIF-IGHRSMILSLA 554 (670)
Q Consensus 484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~--~~~~-~~h~~~I~~l~ 554 (670)
.+.|..||..+++..... .......++|+|+++.|+++... +.|++||+..+.. ...+ ....+....++
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 246777777666554443 44667889999999988887665 7899999876541 1122 11234456789
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
++++|++.+ ++.+ .|.+||. .++.+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus 246 ~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 246 VDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp ECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred ECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999999544 4444 4999997 577777776555 588999999998888888765433
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=7.8e-11 Score=120.82 Aligned_cols=227 Identities=12% Similarity=0.109 Sum_probs=153.8
Q ss_pred CccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 420 h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
+..-.-+..|++++. ++++...++.|+.||..++.. ..+. ....+.+++++++|.++++ . ++.|.+||.++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 334456788999655 556666789999999987654 3333 3467899999999995544 4 578999999877654
Q ss_pred EEecc----cCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913 499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 499 ~~~~~----~~~~v~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
..... ....++.++++|+|+++++.... ....+|.+.. ++... +..+......++|+|+++.|+.
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence 33322 12347889999999976654332 2234444432 33333 3334455788999999987755
Q ss_pred -EECCCeEEEEeC--CCCee-----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913 565 -GDEDGTIMMWDL--ASGRC-----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL 636 (670)
Q Consensus 565 -g~~dg~I~iwDl--~~~~~-----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 636 (670)
.+.++.|.+||+ .++.. +..+..+.+.+..++++++|++.++....+.|.+||..++..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~------------- 232 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR------------- 232 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-------------
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-------------
Confidence 456789999997 45543 222333345678999999999888888888999999876543
Q ss_pred ccccccCCCCCCeEEEEEe-cCCcEEEEeeC
Q 005913 637 RSLKTLPTKSTPVYSLQFS-RRNLLFAAGAL 666 (670)
Q Consensus 637 ~~~~~~~~~~~~V~~l~fs-~~~~~La~gs~ 666 (670)
+..+......+++++|+ |++..|.+++.
T Consensus 233 --~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 --LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred --EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 22333344579999998 88765554443
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=9e-11 Score=122.20 Aligned_cols=222 Identities=10% Similarity=-0.016 Sum_probs=154.2
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
-..+..|+|+ +.+++++..++.|.+|+..+. ....+ .....+.+++|++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----------------------------~~~~~-~~~~~v~~i~~~~ 99 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTVH-ALPFMGSALAKIS 99 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEEE-ECSSCEEEEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----------------------------cEEEE-ECCCcceEEEEeC
Confidence 3578899997 456667777889999997641 11111 1245799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~ 501 (670)
+|++++++ .+ .|.+||..+++....... ....+.++.++|+|.++++... .+.|..++ +++. ..+
T Consensus 100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~ 174 (326)
T 2ghs_A 100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL 174 (326)
T ss_dssp TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence 99877754 44 499999987765433221 1245889999999987665542 24555555 4443 333
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECC--CC-cE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913 502 AGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS--SG-EC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~--~~-~~-----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~ 572 (670)
..+......++|+|+++.++.+ +.++.|.+||+. ++ .. ...+......+..++++++|.+.++...++.|.
T Consensus 175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 3344567899999999877655 456899999986 55 31 222222345678899999999888777778999
Q ss_pred EEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEECC
Q 005913 573 MWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSAD 610 (670)
Q Consensus 573 iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~D 610 (670)
+||. +++.+..+..+...+++++|+ ++++.|+.++..
T Consensus 255 ~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777777777789999998 888766555543
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=2.9e-11 Score=130.14 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=163.7
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~ 499 (670)
....+++|+++++++++...++.|++||..++........... .. ++|++++..++++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999999777877789999999987766655554333 33 99999999999888766 78888887665544
Q ss_pred Ee----cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE----EecCCCCe--EEEEEcCC-CCEEEEEECC
Q 005913 500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED 568 (670)
Q Consensus 500 ~~----~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~----~~~h~~~I--~~l~~sp~-g~~l~sg~~d 568 (670)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456788999999655666677788999999987764332 22222222 39999995 5566666678
Q ss_pred CeEEEEeCCCCeeeEEeeCCC---------------cceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccC
Q 005913 569 GTIMMWDLASGRCVTPLMGHT---------------SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSG 632 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h~---------------~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~ 632 (670)
+.|+.||.... +..+.++. .....++++++|+++++-+ .++.|+.|++..+...........
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~ 366 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV 366 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 89999997643 33333322 3478999999999888887 889999999766542111110000
Q ss_pred CcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 633 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 633 ~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.....- ......-.....++++++|.++++-..+
T Consensus 367 ~g~~~g-~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 367 ASQIDG-TPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp BSCCCB-STTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred CCcCCC-ChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 000000 0011123458899999999888776554
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=1.9e-10 Score=122.00 Aligned_cols=241 Identities=9% Similarity=-0.080 Sum_probs=162.6
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.++|||||++|+++. .++.|.+||..+.......... . ..+.. +.....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~----------------~---~~~~~--~g~~p~ 128 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP----------------D---APRFD--VGPYSW 128 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC----------------C---ccccc--cCCCcc
Confidence 999999999999885 3678999998753221110000 0 00000 012345
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe
Q 005913 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
.++|+|+|++|++++. +++|.++| .+++.+.. +.... ++.+.|++ ..+++.+.||.+.+||. +++.....
T Consensus 129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 7899999999998874 57899999 98887766 54322 24455554 45677788999999999 77766332
Q ss_pred c-----ccCCC-eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEec----------CCCCeEEEEEcCCCCEEE
Q 005913 502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 502 ~-----~~~~~-v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~----------h~~~I~~l~~sp~g~~l~ 563 (670)
. ....+ .....+.+++..++..+..+.+.+.|+.++. .+..+.. .......++++|+++.++
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 1 11111 1234566666655555578899999997653 2222211 112244578999999888
Q ss_pred EEEC----------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913 564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV 624 (670)
Q Consensus 564 sg~~----------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~ 624 (670)
++.. .+.|.++|..+++.+.++.. ....+++.|+|||+ .++++. .++.|.+||+.+.+..
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 7653 35899999999999988853 33578999999999 777777 5899999999987654
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=1.8e-10 Score=119.96 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=150.7
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 423 PVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 423 ~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
-..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|.++++. . ..|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 345678999755 5566667889999999876543 333 34579999999999876654 4 45999999887654433
Q ss_pred cc----cCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCe
Q 005913 502 AG----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT 570 (670)
Q Consensus 502 ~~----~~~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~ 570 (670)
.. ....+.+++++|+|+++++... .+.|..++ +++... +..+......++|+|+|+.|+.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1235889999999997665543 24566666 455433 33333457799999999877655 45789
Q ss_pred EEEEeCC--CC-e-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 571 IMMWDLA--SG-R-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 571 I~iwDl~--~~-~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
|.+||+. ++ . .+..+......+..++++++|+++++...++.|.+|+.. +.. +..+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~---------------~~~i 266 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH---------------IARY 266 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE---------------EEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE---------------EEEE
Confidence 9999986 55 3 122333344567889999999988887778899999973 321 1222
Q ss_pred CCCCCCeEEEEEe-cCCcEEEEeeC
Q 005913 643 PTKSTPVYSLQFS-RRNLLFAAGAL 666 (670)
Q Consensus 643 ~~~~~~V~~l~fs-~~~~~La~gs~ 666 (670)
......+.+++|+ +++..|.+++.
T Consensus 267 ~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECCCCCcEEEEEecCCCCEEEEEec
Confidence 2334469999998 88766655443
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=1.2e-11 Score=142.60 Aligned_cols=236 Identities=13% Similarity=0.119 Sum_probs=161.0
Q ss_pred CEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913 353 GLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (670)
Q Consensus 353 ~V~~l~fs~d~~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (670)
.+..++|||||++||.+. ....|++||+.+.... . ..+.+ ....++
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~-~~~~~--~k~~~~ 180 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------E-TPLKD--VKFSGI 180 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------E-EEEEE--EESCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------c-cccCC--ceeccE
Confidence 588899999999999543 2356999998762210 0 01111 112467
Q ss_pred EEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEeeC---CCccEeEEEEecCCCEEEEEEC----CC
Q 005913 428 SFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYKG---HNYPVWDVQFNPQGHYFASSSH----DR 485 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~~---h~~~V~~l~~sp~g~~l~s~s~----dg 485 (670)
+|+ |++.|+.++.+.. |++|++.+... ...+.. |...+.++.|+|+|++++.... +.
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 259 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN 259 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence 899 9999998887743 99999987653 334443 3345778999999998865542 35
Q ss_pred cEEEEECCCCc-eeEEecccCCCeeEEEEcCCCCEEEEEE-cC---CcEEEEECCCCcE--EEEEecCCCCeEEEEEcCC
Q 005913 486 TARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPD 558 (670)
Q Consensus 486 ~v~lwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~d---g~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~ 558 (670)
.|++||+.++. ....+..+....... |++++..|+..+ .+ +.|..+|+.++.. .+.+..|...+. .|+++
T Consensus 260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence 89999998763 445555565555554 566666655544 33 6799999988754 345666766665 89999
Q ss_pred CCEEEEEECCC---eEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECC----CcEEEEeCCCCc
Q 005913 559 GRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSAD----CTVKLWDVTTST 622 (670)
Q Consensus 559 g~~l~sg~~dg---~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~D----g~I~iwd~~~~~ 622 (670)
++.|+....++ .|++||+..+. ...+. ...+.+..+.+++++..|+....+ ++|..||+.++.
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 99887765443 79999987544 44443 344667788888888766655544 789999987764
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=7.1e-11 Score=121.57 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=157.4
Q ss_pred eeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913 414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~ 492 (670)
...+..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+..++++++|+.+++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 334445556778899999998 56677778999999984 44 4455556667899999999986666556688999998
Q ss_pred CCCceeEEecc----cCCCeeEEEEcCCCCEEEE----EEc-------------CCcEEEEECCCCcEEEEEecCCCCeE
Q 005913 493 DRIQPLRIMAG----HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMIL 551 (670)
Q Consensus 493 ~~~~~~~~~~~----~~~~v~~v~~~p~~~~l~t----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~I~ 551 (670)
+ ++....... ....+.+++++|+|+++++ |+. .+.|..||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 443322211 1234678999999998886 332 256888888777655443 345578
Q ss_pred EEEEcCCCCEEEEEECC------CeEEEEeCCCCeeeE---Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 552 SLAMSPDGRYMASGDED------GTIMMWDLASGRCVT---PL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~d------g~I~iwDl~~~~~~~---~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.++|+|+|+.|+.+... +.|.+||+..+. +. .+ ....+....++++++|++.++. .+ .|.+|+...
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g- 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDG- 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTS-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCC-
Confidence 89999999988887765 789999987654 21 11 1123445678999999955544 44 499998743
Q ss_pred ccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 622 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.. +..+.... .+.+++|++++..|.+++.++
T Consensus 268 ~~---------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 268 QL---------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CE---------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred CE---------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 21 22222222 488999999988777776543
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=1.3e-09 Score=115.66 Aligned_cols=219 Identities=8% Similarity=-0.024 Sum_probs=149.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~ 486 (670)
.++++|||++++++. .+++|.+||..+.+.+..+... ......+.|+|+|++++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998886 3678999999988777665432 123457999999999999874 478
Q ss_pred EEEEECCCCceeEE-ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEe-----cCCCCe-EEEEEcCC
Q 005913 487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMI-LSLAMSPD 558 (670)
Q Consensus 487 v~lwd~~~~~~~~~-~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~I-~~l~~sp~ 558 (670)
|.++| .+++.+.. +... .|+.+.|.+ +.+++.+.||.+.+||. +++.+.... ....++ ....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888776 5422 234555655 45566778999999999 887763322 111221 23456776
Q ss_pred CCEEEEEECCCeEEEEeCCCCe--eeEEeeC----------CCcceEEEEEcCCCCEEEEEEC----------CCcEEEE
Q 005913 559 GRYMASGDEDGTIMMWDLASGR--CVTPLMG----------HTSCVWTLAYSCEGSLLASGSA----------DCTVKLW 616 (670)
Q Consensus 559 g~~l~sg~~dg~I~iwDl~~~~--~~~~~~~----------h~~~V~sl~~s~~g~~l~sgs~----------Dg~I~iw 616 (670)
+..++..+..+.+.+.|+.++. .+..+.. .......+.++|+++.++++.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6655555578899999997552 2222221 1122344788999888777653 3579999
Q ss_pred eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeC
Q 005913 617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGAL 666 (670)
Q Consensus 617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~ 666 (670)
|..+.+. +.+++.. ....+++|+|+|+ +++++..
T Consensus 304 D~~t~~v---------------v~~i~~g-~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 304 TGLVGQT---------------SSQISLG-HDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ECCCCEE---------------EEEEECC-CCcCeEEECCCCCeEEEEEcC
Confidence 9887653 2333322 2578999999998 6776653
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=3.8e-11 Score=125.92 Aligned_cols=265 Identities=11% Similarity=0.033 Sum_probs=174.2
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
.....++++++|+++++.. .++.++||.+.. +.... ... .. ....+|-..+.++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~---~p~--------------~~----~~~~~~~~~p~gv~~ 74 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIP---FPP--------------QS----GNAIITFDTVLGIKS 74 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEE---SCC--------------CC----SSCCCCCSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeec---CCC--------------cc----cCcccceeEeeEEEE
Confidence 5789999999999988863 234366776642 11110 000 00 011246678999999
Q ss_pred cCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeeCC------CccEeEEEEecCCCE-EEEEE---CCCcEEEEECCC
Q 005913 430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHY-FASSS---HDRTARIWSMDR 494 (670)
Q Consensus 430 sp~~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~g~~-l~s~s---~dg~v~lwd~~~ 494 (670)
+++++++++-+. ++.|.+||+.+++.+..+... ...+.++++++++.. +++.. .++.|.+||+.+
T Consensus 75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 999886665543 578999999988876666532 234688999986444 45554 678999999998
Q ss_pred CceeEEecccCCCee-EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEE
Q 005913 495 IQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM 572 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg-~I~ 572 (670)
++..+.+.+|..... ...+.++|..+.+.+.++.+..|. ..+..|+|+|+|+.|+.+..++ .|.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEE
Confidence 887777765432111 134455777777777788776653 2357899999999998887766 555
Q ss_pred EEeCC---CCe-----eeE--EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913 573 MWDLA---SGR-----CVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (670)
Q Consensus 573 iwDl~---~~~-----~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (670)
.++.. .+. ... ...++.+....++++++|+++++...++.|.+||...+.. ..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-------------~~~~~~ 287 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-------------KLLVTD 287 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-------------EEEEEC
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-------------EEEEEC
Confidence 55532 110 000 1113344566799999999999999999999999844321 111111
Q ss_pred CCCCCCeEEEEEecCCcEEEEeeC
Q 005913 643 PTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 643 ~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
+ ....+.+++|++++.++++.+.
T Consensus 288 ~-~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 288 E-KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp G-GGSCEEEEEECTTSCEEEEECC
T ss_pred C-ceecCCeeEECCCCcEEEEeCc
Confidence 1 2345889999999988887653
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=2.8e-10 Score=119.83 Aligned_cols=243 Identities=12% Similarity=0.049 Sum_probs=162.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+++||||++++++. .++.|.+||..+........... +. + ........
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------g~----r--~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------------AP----R--FLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------CC----C--CCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------cc----c--cccCCCCc
Confidence 399999999988775 36789999987633221100000 00 0 00011344
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEec
Q 005913 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA 502 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~ 502 (670)
.++|+|||++++++.. +++|.++|+.+++.+..+....+ ...+....+.|++.+.||.+.+.++.. ++......
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence 6899999999888864 68999999999998888764332 223444566788889999999999976 55433222
Q ss_pred ccC----CCe-eEEEEc-CCCCEEEEEEcCCcEEEEECCCCcE--EEEEe---c-------CCCCeEEEEEcCCCCEEEE
Q 005913 503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 503 ~~~----~~v-~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~---~-------h~~~I~~l~~sp~g~~l~s 564 (670)
.+. ..+ ....|. ++|++++ .+.+|.|++.|+.++.. +..+. . ..+....++++|+++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 121 111 124554 6775555 55689999999976642 22221 0 1123445788999998887
Q ss_pred EEC----------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCccc
Q 005913 565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKV 624 (670)
Q Consensus 565 g~~----------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sg-s~Dg~I~iwd~~~~~~~ 624 (670)
... .+.|.++|+.+++.+.++..- ..+++|.+++|++ +|+++ ..++.|.|+|..+++..
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 643 257999999999999887632 3688999999996 66665 45899999999887643
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=7.8e-11 Score=135.72 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=138.5
Q ss_pred CccCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc--------
Q 005913 420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~-------- 486 (670)
|...+.+++|||||++||.+ +...+|++||+.+++.+.... +......++|+ ||+.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 45578889999999988843 233579999999988654311 11113578999 9999999988743
Q ss_pred -----EEEEECCCCce--eEEecc---cCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCc-EEEEEecCCCCeE
Q 005913 487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL 551 (670)
Q Consensus 487 -----v~lwd~~~~~~--~~~~~~---~~~~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~-~~~~~~~h~~~I~ 551 (670)
|++|++.+... ...+.. |...+..+.|+|+|++|+.... +..|++||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999987653 333332 3345778999999999876543 2489999998764 4455666666665
Q ss_pred EEEEcCCCCEEEEEEC----CCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 005913 552 SLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS 621 (670)
Q Consensus 552 ~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~I~iwd~~~~ 621 (670)
.. ++++|..|+..+. .+.|..||+.++.. ...+..|...+. .|+++++.|+....++ .|++|++...
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 55 6677766655443 36899999988754 345666766555 8899998877766544 6888988743
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=8.6e-10 Score=116.15 Aligned_cols=257 Identities=14% Similarity=0.085 Sum_probs=171.2
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913 359 ISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (670)
Q Consensus 359 fs~d~~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (670)
..|+++.+.+... ++.|.+.|..+. +....+.....+ . ++++|+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P-~-va~spDG 89 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP-N-PVVADDG 89 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC-E-EEECTTS
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC-c-EEECCCC
Confidence 3578888887755 578999998752 222333333344 3 9999999
Q ss_pred CEEEEEe----------CCCeEEEEeCCCCceeEEeeCCC-------ccEeEEEEecCCCEEEEEEC--CCcEEEEECCC
Q 005913 434 DFILSSS----------ADTTIRLWSTKLNANLVCYKGHN-------YPVWDVQFNPQGHYFASSSH--DRTARIWSMDR 494 (670)
Q Consensus 434 ~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~ 494 (670)
+++++++ .++.|.+||..+.+.+..+.... ...+.+.++|+|++++++.. ++.|.++|+.+
T Consensus 90 ~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 90 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence 9887765 36789999999998887765321 24567999999999988864 68999999999
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecC----CCCeE-EEEEc-CCCCEEEEEEC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGH----RSMIL-SLAMS-PDGRYMASGDE 567 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h----~~~I~-~l~~s-p~g~~l~sg~~ 567 (670)
.+.+..+.... . ...+....+.+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.
T Consensus 170 ~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~ 245 (386)
T 3sjl_D 170 KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY 245 (386)
T ss_dssp TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC
Confidence 99988875322 1 223333446777888899999999876 5543322111 12221 24554 6776555 556
Q ss_pred CCeEEEEeCCCCe--eeEEee---------C-CCcceEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCcccc
Q 005913 568 DGTIMMWDLASGR--CVTPLM---------G-HTSCVWTLAYSCEGSLLASGSA----------DCTVKLWDVTTSTKVL 625 (670)
Q Consensus 568 dg~I~iwDl~~~~--~~~~~~---------~-h~~~V~sl~~s~~g~~l~sgs~----------Dg~I~iwd~~~~~~~~ 625 (670)
+|.|++.|+.++. .+..+. + ..+....++++++++.++.... .+.|.+.|+.+.+..
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~- 324 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL- 324 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE-
Confidence 8999999997654 333332 0 1123345777999888877643 257889999887543
Q ss_pred ccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEee
Q 005913 626 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA 665 (670)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs 665 (670)
..++.. .++++++|+++++ +|.++.
T Consensus 325 --------------~~i~vg-~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 325 --------------AKFEMG-HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp --------------EEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred --------------EEEECC-CCcceEEECCCCCeEEEEEc
Confidence 222222 3688999999996 555543
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=2e-09 Score=115.36 Aligned_cols=198 Identities=8% Similarity=0.016 Sum_probs=134.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~ 486 (670)
.++++||+++|+++. .++.|.++|..+.+.+..+.-. ......+.++|+|++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888776 3678999999999888776521 123457899999999999874 578
Q ss_pred EEEEECCCCceeEEecccCC-------CeeEEEEcCCCCEEEE-------------------------------------
Q 005913 487 ARIWSMDRIQPLRIMAGHLS-------DVDCVRWHINCNYIAT------------------------------------- 522 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~~~~-------~v~~v~~~p~~~~l~t------------------------------------- 522 (670)
|.+.|+.+.+.+..+..... .-..+.++++|++++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999888776653110 0111333344443333
Q ss_pred EEcCCcEEEEECCCCcEEE--EEec----------CCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEeCCCCe
Q 005913 523 GSSDKTVRLWDVSSGECVR--IFIG----------HRSMILSLAMSPDGRYMASGDE----------DGTIMMWDLASGR 580 (670)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~--~~~~----------h~~~I~~l~~sp~g~~l~sg~~----------dg~I~iwDl~~~~ 580 (670)
.+..+.|.+.|...+.... .+.. .......++++|+++.+++... .+.|.++|..+.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 2333444444443322110 0000 0011123689999887777642 3579999999999
Q ss_pred eeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913 581 CVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV 624 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~ 624 (670)
.+.++... ...+++.|+|||+ +++++. .++.|.|+|+.+.+..
T Consensus 362 vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 362 RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 99888632 2478999999999 888888 5899999999987653
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=5.9e-12 Score=133.64 Aligned_cols=184 Identities=14% Similarity=0.067 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC-ee-
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VD- 509 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~-v~- 509 (670)
++..+++++.||.|+.||..+++.+..+.. .++.+..+..++..+++++.||.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 478899999999999999999999888876 45655556667777888889999999999988877666533211 11
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~ 589 (670)
+..+ ..+..+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||..+|+.+..+..+.
T Consensus 86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 0011 135578888899999999999999988776553 24567788899999999999999999998776554221
Q ss_pred cceEEEEEcCCC---CEEEEEECCCcEEEEeCCCCccc
Q 005913 590 SCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 590 ~~V~sl~~s~~g---~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
....+++.+. ..+++++.||.|..||..++...
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 1223333332 56777899999999999887654
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=131.02 Aligned_cols=204 Identities=13% Similarity=0.003 Sum_probs=115.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~ 441 (670)
++..+++|+.||.|..||..+... ...+.. +.+.+..+..++..+++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~----------------------------~W~~~~--~~~~s~p~~~~g~~~v~~s~ 57 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI----------------------------KWTLKE--DPVLQVPTHVEEPAFLPDPN 57 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE----------------------------EEEEEC--CCSCCCC-----CCEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE----------------------------EEEecC--CCceecceEcCCCEEEEeCC
Confidence 578899999999999999875322 111222 33444445566777888889
Q ss_pred CCeEEEEeCCCCceeEEeeCCCcc-EeE-EEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCE
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYP-VWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~~-l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 519 (670)
||.|+.||..+++.+..+..+... +.+ ..+. .+..+++++.|+.++.||..+++.+..+..+. ...++|++..
T Consensus 58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~ 132 (369)
T 2hz6_A 58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL 132 (369)
T ss_dssp TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence 999999999988887666543211 110 0111 34567888889999999999999887776543 2345678889
Q ss_pred EEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceE-EE
Q 005913 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TL 595 (670)
Q Consensus 520 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~-sl 595 (670)
+++++.|+.|+.||.++|+.+..+..+. ....++++++ ..+++++.||.|+.||..+|+.+..... .+++. ..
T Consensus 133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~ 209 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFY 209 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEE
T ss_pred EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEE
Confidence 9999999999999999998776654221 1223334432 5677888999999999999998877663 33443 34
Q ss_pred EEcCCCCE
Q 005913 596 AYSCEGSL 603 (670)
Q Consensus 596 ~~s~~g~~ 603 (670)
.++++|..
T Consensus 210 ~~~~dg~~ 217 (369)
T 2hz6_A 210 VWQREGLR 217 (369)
T ss_dssp ECTTSSCE
T ss_pred EecCCceE
Confidence 55566643
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=3.6e-09 Score=110.78 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=151.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913 350 THNGLNCASISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (670)
+-..+.+++|+++++++++... ++.|.+||+.+.......... .....+...+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~----------------------~~~~~~~~~~ 122 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP----------------------PPITLSNSFV 122 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC----------------------TTTSCTTCCC
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC----------------------hhhccccccc
Confidence 3457999999999987776544 578999998753211110000 0000123456
Q ss_pred EEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeEEeeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 425 YSASFSPLGDFI-LSSS---ADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 425 ~~l~~sp~~~~L-~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
..+++++++..+ ++.+ .++.|.+||+.+++....+.+|..... ...+.++|..|.+.+.++.+..|.
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------- 194 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------- 194 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------
Confidence 789999865554 5544 678999999998877666655432111 144566787787788888876653
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECC---CCc--------EEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE--------CVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~---~~~--------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
..+..++|+|+++.|+++..++ .|..++.. .+. .+. ..++.+....++++++|.++++...
T Consensus 195 ------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~ 267 (343)
T 2qe8_A 195 ------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLA 267 (343)
T ss_dssp ------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGG
T ss_pred ------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccC
Confidence 2367899999999998887766 55555431 111 011 1234455678999999999999989
Q ss_pred CCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
++.|.+||..+++....... +...+.+++|++++.++++.+..+.+.+|.
T Consensus 268 ~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 268 HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99999999856664333322 235688999999998888877655554443
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=1.8e-08 Score=115.55 Aligned_cols=184 Identities=12% Similarity=0.074 Sum_probs=132.3
Q ss_pred CCeEEEEeCCCCceeEEeeCCC------------------------------ccE-eEEEEecCCCEEEEEECCCc----
Q 005913 442 DTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT---- 486 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~l~~sp~g~~l~s~s~dg~---- 486 (670)
+|.|+.||..+++.+-.+.... ..+ ..++++|++..++.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 7899999999999887665210 011 25788898888998887764
Q ss_pred ---------------EEEEECCCCceeEEecc--cC-------CCeeEEEEcCCCC---EEEEEEcCCcEEEEECCCCcE
Q 005913 487 ---------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC 539 (670)
Q Consensus 487 ---------------v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~ 539 (670)
|..||.++++.+..+.. |. ..+.......+|+ .++.++.+|.++++|..+|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999999887764 21 1222223333565 788999999999999999998
Q ss_pred EEEEecCC----------------------------C-----------CeEEEEEcCCCCEEEEEEC-------------
Q 005913 540 VRIFIGHR----------------------------S-----------MILSLAMSPDGRYMASGDE------------- 567 (670)
Q Consensus 540 ~~~~~~h~----------------------------~-----------~I~~l~~sp~g~~l~sg~~------------- 567 (670)
+....... . .-..++++|+..++++...
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 74432110 0 0112788998888877532
Q ss_pred --------------------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913 568 --------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 568 --------------------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
+|.|..||+.+|+.+-++..+. ++..-.++..+.++++|+.||.|+.
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence 3789999999999887776543 2333455667889999999999999
Q ss_pred EeCCCCccccc
Q 005913 616 WDVTTSTKVLK 626 (670)
Q Consensus 616 wd~~~~~~~~~ 626 (670)
||..+++.+..
T Consensus 501 ~D~~tG~~lw~ 511 (689)
T 1yiq_A 501 YAADTGEKLWE 511 (689)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCcccee
Confidence 99999876543
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=3.8e-08 Score=104.44 Aligned_cols=226 Identities=10% Similarity=0.092 Sum_probs=152.1
Q ss_pred EEc--CCCCEEEE-EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-------cCccCEEEE
Q 005913 358 SIS--QDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-------GHSGPVYSA 427 (670)
Q Consensus 358 ~fs--~d~~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l 427 (670)
.++ +++++|++ |..++.|.|+|+.+.... .+...... .....-..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~------------------------p~~~k~ie~~~~~~~~g~s~Ph~~ 143 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE------------------------PKIIKVIEPEEVKKVSGYSRLHTV 143 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS------------------------CEEEEEECHHHHHHHHCEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCC------------------------ceeeeeechhhcccccCCCcccce
Confidence 446 78888775 556788999998642110 11112220 011234567
Q ss_pred EEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCc---cEeEEEEecCCCEEEEEE----------------
Q 005913 428 SFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS---------------- 482 (670)
Q Consensus 428 ~~sp~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s---------------- 482 (670)
..+|+| +++++..+ |.|.++|..+++.+..+..... --.++.|+|+++.+++..
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 788999 76666555 7899999999999888863222 234688999999888875
Q ss_pred ---CCCcEEEEECCCCceeEEeccc--CCCeeEEEE--cCCCCEEEEEEc------CCcEEEEECCCCcE--EEEE--ec
Q 005913 483 ---HDRTARIWSMDRIQPLRIMAGH--LSDVDCVRW--HINCNYIATGSS------DKTVRLWDVSSGEC--VRIF--IG 545 (670)
Q Consensus 483 ---~dg~v~lwd~~~~~~~~~~~~~--~~~v~~v~~--~p~~~~l~tgs~------dg~I~iwd~~~~~~--~~~~--~~ 545 (670)
.+.+|.+||+.+++.+..+... ......+.| +|+++++++++. +++|.+|....+.. ...+ ..
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 3689999999988777776642 123455656 999999988774 56887766554432 1111 11
Q ss_pred C----------------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCC---CeeeEEeeCC-----------C---cc
Q 005913 546 H----------------RSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS---GRCVTPLMGH-----------T---SC 591 (670)
Q Consensus 546 h----------------~~~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~---~~~~~~~~~h-----------~---~~ 591 (670)
. ......|.+||||++|+++.. .+.|.+||+.. .+.+..+... . +.
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0 234678999999999988764 68999999852 3445444321 0 13
Q ss_pred eEEEEEcCCCCEEEEEE
Q 005913 592 VWTLAYSCEGSLLASGS 608 (670)
Q Consensus 592 V~sl~~s~~g~~l~sgs 608 (670)
...+.++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 57899999999999887
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=1.8e-08 Score=115.27 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=161.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~ 441 (670)
++..|++++.|+.|..+|..+....-........ . . .......++ . .+..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---------------~-~--~~~~~~~p~----v--~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---------------K-G--SLTITGAPR----V--FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---------------C-S--SCBCCSCCE----E--ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---------------C-c--CcccccCcE----E--ECCEEEEEec
Confidence 4567888889999999998764332111100000 0 0 000011121 1 1344554443
Q ss_pred ------CCeEEEEeCCCCceeEEeeCCCcc--------------------------------EeEEEEecCCCEEEEEEC
Q 005913 442 ------DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSH 483 (670)
Q Consensus 442 ------Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~l~~sp~g~~l~s~s~ 483 (670)
+|.|+.||..+++.+-.+...... ...++++|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 789999999999988776542211 124788898888888876
Q ss_pred CC-------------------cEEEEECCCCceeEEecc--cC-------CCeeEEEEcCCC---CEEEEEEcCCcEEEE
Q 005913 484 DR-------------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLW 532 (670)
Q Consensus 484 dg-------------------~v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~---~~l~tgs~dg~I~iw 532 (670)
++ .|..+|.++++.+..+.. |. .....+....+| ..+++++.+|.|+++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 599999999998877663 21 122333444477 688999999999999
Q ss_pred ECCCCcEEEEEecCC-----------CCe------------------------EEEEEcCCCCEEEEEEC----------
Q 005913 533 DVSSGECVRIFIGHR-----------SMI------------------------LSLAMSPDGRYMASGDE---------- 567 (670)
Q Consensus 533 d~~~~~~~~~~~~h~-----------~~I------------------------~~l~~sp~g~~l~sg~~---------- 567 (670)
|..+|+.+..+.... .++ ..++++|++.++++...
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 999999987664221 011 15688998888877643
Q ss_pred ---------------------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 568 ---------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 568 ---------------------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
.|.|..||+.+++.+-++. +..++.+..++.++.+++.++.||.++
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~ 501 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLV 501 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEE
Confidence 2789999999999887765 333445555667788899999999999
Q ss_pred EEeCCCCcccccc
Q 005913 615 LWDVTTSTKVLKT 627 (670)
Q Consensus 615 iwd~~~~~~~~~~ 627 (670)
+||..+++.+...
T Consensus 502 a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 502 AYHAATGEKLWEA 514 (677)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCceeeee
Confidence 9999998765443
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=4.9e-07 Score=90.63 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=141.4
Q ss_pred cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~ 499 (670)
..+.+++|++++..|. +....+.|..+++..................+++++++..++.+ ...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4578999999766555 44557899999998655444333333467899999976555544 456799999987544333
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD 575 (670)
...........++++|++..|+.+.. .+.|..+++..................++++|++..|+.+. ..+.|.++|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 33333356789999997666655554 36888888764332222223334578999999877665554 568999999
Q ss_pred CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC-CCeEEEEE
Q 005913 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS-TPVYSLQF 654 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~f 654 (670)
+........+... .....++.. ++.++++....+.|.++|..++... ..++... ...+.+++
T Consensus 196 ~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~---------------~~i~~g~~~~p~gi~~ 258 (267)
T 1npe_A 196 PAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM---------------DTFHPHKQTRLYGITI 258 (267)
T ss_dssp TTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE---------------EEECCSSCCCCCCEEE
T ss_pred cCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce---------------EEEccccccccceeee
Confidence 9765443333322 334567664 4445555556689999998876432 2222222 23677788
Q ss_pred ecCCc
Q 005913 655 SRRNL 659 (670)
Q Consensus 655 s~~~~ 659 (670)
.|++.
T Consensus 259 ~~~~~ 263 (267)
T 1npe_A 259 ALSQC 263 (267)
T ss_dssp ECSCC
T ss_pred cCccC
Confidence 88764
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=4.6e-08 Score=103.81 Aligned_cols=233 Identities=14% Similarity=0.158 Sum_probs=150.0
Q ss_pred CCCCEEEE-EeCCCeEEEEeCCCC----ceeEEee-------CCCccEeEEEEecCCCEEEEEECC------CcEEEEEC
Q 005913 431 PLGDFILS-SSADTTIRLWSTKLN----ANLVCYK-------GHNYPVWDVQFNPQGHYFASSSHD------RTARIWSM 492 (670)
Q Consensus 431 p~~~~L~s-~s~Dg~I~lwd~~~~----~~~~~~~-------~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~ 492 (670)
+++++|++ |..+++|+++|+.+. +...++. .....-..+..+|+| .++++..+ |.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887664 556789999999755 4445452 111234567888999 66666555 78999999
Q ss_pred CCCceeEEecccCCC---eeEEEEcCCCCEEEEEE-------------------cCCcEEEEECCCCcEEEEEecC-C-C
Q 005913 493 DRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIGH-R-S 548 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~---v~~v~~~p~~~~l~tgs-------------------~dg~I~iwd~~~~~~~~~~~~h-~-~ 548 (670)
.+.+.+..+...... -..+.|+|+++.+++.. .+.+|.+||+.+++.+..+... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999999888632221 33578899999888874 3689999999998888777642 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEE------CCCeEEEEeCCCCee--eEEe--eCC----------------CcceEEEEEcCC
Q 005913 549 MILSLAM--SPDGRYMASGD------EDGTIMMWDLASGRC--VTPL--MGH----------------TSCVWTLAYSCE 600 (670)
Q Consensus 549 ~I~~l~~--sp~g~~l~sg~------~dg~I~iwDl~~~~~--~~~~--~~h----------------~~~V~sl~~s~~ 600 (670)
....+.| +|+|+++++++ .++.|.+|....+.. +..+ ... ...+..+.+|+|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445656 99999888876 566888776654421 1111 110 134678999999
Q ss_pred CCEEEEEEC-CCcEEEEeCCCCcccccccc-ccCCcccccccccCCC--CCCeEEEEEecCCcEEEEee
Q 005913 601 GSLLASGSA-DCTVKLWDVTTSTKVLKTEE-KSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 601 g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs 665 (670)
|++|.++.. .+.|.+||+........... ..+. .........+. ...-..+.++|+|++|.++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG-~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG-IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT-TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC-eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 998887764 68999999974322111110 0000 00000000000 11357889999999888876
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=1.4e-08 Score=106.92 Aligned_cols=194 Identities=7% Similarity=-0.046 Sum_probs=127.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~ 486 (670)
.+.++||+++++++. .+++|.+||+.+++.+..+..+ ......+.++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 3689999999999998887643 123557999999999998874 457
Q ss_pred EEE--EECCCCceeEEeccc------------------CCCeeEEEE--------------------------cCCCCEE
Q 005913 487 ARI--WSMDRIQPLRIMAGH------------------LSDVDCVRW--------------------------HINCNYI 520 (670)
Q Consensus 487 v~l--wd~~~~~~~~~~~~~------------------~~~v~~v~~--------------------------~p~~~~l 520 (670)
+.+ +|..+ +..+... .+.+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88865 2222100 000000000 2223333
Q ss_pred EEEEcCCcEEEEECCCCc--EEEEEec-------C---CCCeEEEEEcCCCCEEEEEEC---------CCeEEEEeCCCC
Q 005913 521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------H---RSMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG 579 (670)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~--~~~~~~~-------h---~~~I~~l~~sp~g~~l~sg~~---------dg~I~iwDl~~~ 579 (670)
+..+. +.|.+.|+.++. .+..+.. + ......++++|+|+.++.+.. ++.+.++|+.++
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33333 666677765432 1111110 0 011222789999998887543 235679999999
Q ss_pred eeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913 580 RCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV 624 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~ 624 (670)
+.+..+.... ....++|+|||+ ++++.. .+++|.|+|+.+.+..
T Consensus 305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988876443 578999999997 566776 5999999999987643
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=9.8e-09 Score=105.94 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=147.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~ 512 (670)
+..|..++.++.|..+|.. +.....+..+...+.++...+++. +..++.++.|..||.. ++....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 5567788888999999998 777666666665667777777776 6667788999999998 777766665566677888
Q ss_pred EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (670)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V 592 (670)
..++++.++ ++ +.|..+| .+++....+......+.++...++|. |..++.++.|..+| .++..+..+......+
T Consensus 184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE 257 (330)
T ss_dssp ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence 877877554 44 8899999 78887777766666788889988875 55566788899898 4666666665544445
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
.++.+.+++ .|..++.+|.|..+|. ++... ..+......+.++...++|.+.+ |+.+|
T Consensus 258 ~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~---------------~~~~~~~~~~~~~~~d~~g~l~~-gt~~G 315 (330)
T 3hxj_A 258 SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK---------------WNFETGSWIIATPVIDENGTIYF-GTRNG 315 (330)
T ss_dssp SCCEECTTS-CEEEECTTCEEEEECT-TSCEE---------------EEEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred ccceEcCCC-eEEEecCCCCEEEECC-CCcEE---------------EEEEcCCccccceEEcCCCEEEE-EcCCC
Confidence 556666565 4667788888999985 33321 11122234566777778887554 55555
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.97 E-value=2.9e-07 Score=95.09 Aligned_cols=268 Identities=7% Similarity=0.037 Sum_probs=157.5
Q ss_pred CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (670)
Q Consensus 340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (670)
|....+.+.+.-....+++|+++++++.++..++.|..|+............ .. .. .... ..+.. ......
T Consensus 7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~--~~-~~~~--~~g~~--~~~~~~ 77 (322)
T 2fp8_A 7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SP--YW-NKAF--CENST--DAEKRP 77 (322)
T ss_dssp ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CT--TC-CHHH--HTTCC--CGGGHH
T ss_pred CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--cc--cc-cccc--ccccc--chhccc
Confidence 3333344443334567788999999888888999999998654211100000 00 00 0000 00000 000001
Q ss_pred CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-----CCccEeEEEEec-CCCEEEEEEC----------
Q 005913 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH---------- 483 (670)
Q Consensus 420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp-~g~~l~s~s~---------- 483 (670)
....+.++++.+++..|+.+...+.|..+|..++.. ..+.. ......++++.+ +|..+++...
T Consensus 78 ~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 78 LCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp HHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred cCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 123578999998334455555555688888775432 22221 112467899999 9987666432
Q ss_pred -------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCc--EEEEEecCCCCeEEE
Q 005913 484 -------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILSL 553 (670)
Q Consensus 484 -------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l 553 (670)
++.|..||..+++..... ........++|+|+++.|+++ +..+.|..|++.... ....+....+ ...+
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred ehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 367888888766543322 223456789999999977665 456899999987521 1222222233 7889
Q ss_pred EEcCCCCEEEEEEC----------CCeEEEEeCCCCeeeEEeeCCC----cceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913 554 AMSPDGRYMASGDE----------DGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (670)
Q Consensus 554 ~~sp~g~~l~sg~~----------dg~I~iwDl~~~~~~~~~~~h~----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~ 619 (670)
++.++|++.++... .+.|..+|. .++.+..+.... ..++++++ .+++++++....+.|.++++.
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 99999987766544 467899986 477776665432 34677776 466666666678899999976
Q ss_pred CC
Q 005913 620 TS 621 (670)
Q Consensus 620 ~~ 621 (670)
..
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 53
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=1.3e-08 Score=111.60 Aligned_cols=228 Identities=12% Similarity=0.070 Sum_probs=156.0
Q ss_pred CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-CccEeEEEE-e-cCCCEEEEEE------------------CCCcEE
Q 005913 431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-NYPVWDVQF-N-PQGHYFASSS------------------HDRTAR 488 (670)
Q Consensus 431 p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~-s-p~g~~l~s~s------------------~dg~v~ 488 (670)
+||+++..+.. ++.|.+.|+.+.++...+.-. ......+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37888776654 567999999999987755432 245778887 5 8999998885 245799
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC--------------------------------------cEE
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR 530 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg--------------------------------------~I~ 530 (670)
++|.++.+....+.-.. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988888776432 457788999999999988543 477
Q ss_pred EEECCC--CcE-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCe------------eeEEeeCCCcceEE
Q 005913 531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT 594 (670)
Q Consensus 531 iwd~~~--~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~------------~~~~~~~h~~~V~s 594 (670)
+.|.++ ++. ++.+.. .....++.++|||+++++++ .+..|.++|+.+.+ .+..+. -......
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence 788877 544 444432 23467899999999877665 67899999998653 233332 2245788
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe-----EEEEEecCCcEEEEeeC
Q 005913 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV-----YSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 595 l~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-----~~l~fs~~~~~La~gs~ 666 (670)
++|+++|...++.-.|+.|.+||+....... .+......+..++.+..|- .++.++|||++|+++..
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~-----~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAY-----AGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHH-----HTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhh-----cccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999656667789999999987632100 0000112333444443332 23355889998887653
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.92 E-value=1e-07 Score=102.01 Aligned_cols=186 Identities=13% Similarity=0.058 Sum_probs=136.1
Q ss_pred CCCCEEEEEeC-C----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----------CCCcEEEEECCCC
Q 005913 431 PLGDFILSSSA-D----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------HDRTARIWSMDRI 495 (670)
Q Consensus 431 p~~~~L~s~s~-D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----------~dg~v~lwd~~~~ 495 (670)
++++.++++.. + ++|.++|..+++.+..+.....+ .+.++|+|++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 35565555544 2 69999999999999888866666 899999999888876 3678999999999
Q ss_pred ceeEEeccc-------CCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 005913 496 QPLRIMAGH-------LSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASG 565 (670)
Q Consensus 496 ~~~~~~~~~-------~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg 565 (670)
+.+..+.-. ......++|+|+|++++++.. ++.|.++|+.+++.+..+.... +....|+| +.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 988776521 234567899999999999874 5789999999999988776422 13344543 566677
Q ss_pred ECCCeEEEEeCCCCeeeEE----eeCCCcce-EEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 566 DEDGTIMMWDLASGRCVTP----LMGHTSCV-WTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 566 ~~dg~I~iwDl~~~~~~~~----~~~h~~~V-~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+.||.+.+.++.+++.... +.....++ ..+.|++++..++..+..+.|.+.|+....
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 7888888888866654422 11112222 235678998888777888999999987643
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.90 E-value=1.4e-07 Score=97.18 Aligned_cols=218 Identities=11% Similarity=-0.000 Sum_probs=152.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (670)
Q Consensus 363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D 442 (670)
+..+.+|+.++.|..++... .. ......+...+.++...+++. +..++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g-~~----------------------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~ 156 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDG-TE----------------------------KWRFKTKKAIYATPIVSEDGT-IYVGSND 156 (330)
T ss_dssp TTEEEEECTTSEEEEECTTS-CE----------------------------EEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred CCEEEEEecCCEEEEEcCCC-CE----------------------------EEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence 45677788888888888651 11 111112233345556666666 5567778
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t 522 (670)
+.|..||.. +.....+......+.++...+++..++ ++ +.+..|| .+++....+......+.++...++++ |.+
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 999999998 777766666666677788877777544 44 8899999 67777766665666788888888775 555
Q ss_pred EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (670)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~ 602 (670)
++.++.|..+| .+++.+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++..+++|.
T Consensus 231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 66788888888 4666666666555545556666566 5667888889999995 7777776665556677788877776
Q ss_pred EEEEEECCCcEEEEeCCC
Q 005913 603 LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 603 ~l~sgs~Dg~I~iwd~~~ 620 (670)
|..|+.+|.+++.....
T Consensus 308 -l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 308 -IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -EEEECTTSCEEEEEC--
T ss_pred -EEEEcCCCeEEEEeccc
Confidence 55688999999887655
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=1.6e-07 Score=107.33 Aligned_cols=153 Identities=7% Similarity=0.062 Sum_probs=110.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCC-C----ccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGH-N----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~----~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~ 501 (670)
+..|++++.|+.|..+|..+++.+..+..+ . ..+.+.-.. .+..+++++. ++.|+.||..+++.+..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888899999999999999998887754 2 122211111 2345555543 699999999999988776
Q ss_pred cccCCC--------------------------------eeEEEEcCCCCEEEEEEcCC-------------------cEE
Q 005913 502 AGHLSD--------------------------------VDCVRWHINCNYIATGSSDK-------------------TVR 530 (670)
Q Consensus 502 ~~~~~~--------------------------------v~~v~~~p~~~~l~tgs~dg-------------------~I~ 530 (670)
...... ...++++|+++.+++++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 532211 13578899999999887664 599
Q ss_pred EEECCCCcEEEEEecCC---------CCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 531 LWDVSSGECVRIFIGHR---------SMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 531 iwd~~~~~~~~~~~~h~---------~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.+|..+|+.+..+.... .....+....+| ..++.++.+|.|+++|..+|+.+..+.
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 99999999998876421 112233344477 689999999999999999999887654
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=3.1e-06 Score=84.66 Aligned_cols=220 Identities=9% Similarity=0.053 Sum_probs=141.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
.+.+++|++++..|. +-..++.|.++++..... ............++++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~ 88 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH 88 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence 478999999765555 445578899999764110 111111224678999999
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEecccCCC
Q 005913 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
++..|. +....+.|.++++..................++++|++..++.+.. .+.|..++++..............
T Consensus 89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~ 168 (267)
T 1npe_A 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence 766555 4455788999998754333333322245689999997666555543 368888888754332222233456
Q ss_pred eeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
...++++|++..|+.+. ..+.|..+|.........+.+ ......++.. .+..+++....+.|.++|..+++.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 78999999877666554 457899999875544333332 2344567664 34444444466899999999999888876
Q ss_pred CCC-cceEEEEEcCCCC
Q 005913 587 GHT-SCVWTLAYSCEGS 602 (670)
Q Consensus 587 ~h~-~~V~sl~~s~~g~ 602 (670)
... ...+.+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 433 2467788887764
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.88 E-value=1.1e-07 Score=109.12 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEec---CCCEEEEEE------CCCcEEEEECCCCceeEEe
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNP---QGHYFASSS------HDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp---~g~~l~s~s------~dg~v~lwd~~~~~~~~~~ 501 (670)
+..|++++.|+.|..+|..+++.+-.+... ......+..+| ++. +++++ .+|.|+.||..+++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888899999999999999988776642 11111111222 444 44443 3789999999999988776
Q ss_pred cccC-------------------------------CCeeEEEEcCCCCEEEEEEcCCc-------------------EEE
Q 005913 502 AGHL-------------------------------SDVDCVRWHINCNYIATGSSDKT-------------------VRL 531 (670)
Q Consensus 502 ~~~~-------------------------------~~v~~v~~~p~~~~l~tgs~dg~-------------------I~i 531 (670)
.... .....+++.|+.+.+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 11135788899999999887764 999
Q ss_pred EECCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEE
Q 005913 532 WDVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 532 wd~~~~~~~~~~~~--h~-------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
||..+|+.+..+.. |. .++.......+|+ .++.++.+|.++++|..+|+.+..
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 99999999988764 21 1222223333665 788999999999999999998743
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=4.7e-07 Score=90.32 Aligned_cols=194 Identities=7% Similarity=-0.024 Sum_probs=139.2
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEE-ECCCcEEEEECCCCcee
Q 005913 423 PVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPL 498 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~ 498 (670)
....+.|++++.+.++.+. ++.|+++|+.+++.+..+.-... ....+++. +..++.+ -.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3689999998654444443 57999999999998887653221 22345554 4455444 46789999999999988
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
..+...... ...++++|+.++++..++.|.++|..+.+.+..+.... ..+..+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 888633112 23355688878777778999999999998887765322 136678888 7765555556889999
Q ss_pred EeCCCCeeeEEeeCC-------------CcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 005913 574 WDLASGRCVTPLMGH-------------TSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 574 wDl~~~~~~~~~~~h-------------~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~ 621 (670)
.|..+++.+..+... ......++|+|+++ +++++...+.|.+.++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999998887632 13568999999876 5556667788988887654
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.86 E-value=9.7e-08 Score=100.47 Aligned_cols=210 Identities=11% Similarity=-0.053 Sum_probs=130.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-----
Q 005913 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----- 420 (670)
Q Consensus 356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----- 420 (670)
.+.||||+++++++. .++.|.+||+.+..... .+..+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~----------------------------~I~v~~~~~~ 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA----------------------------DIELPDAPRF 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE----------------------------EEEETTSCSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE----------------------------EEECCCcccc
Confidence 799999999999886 36889999988643222 11111
Q ss_pred --ccCEEEEEEcCCCCEEEEEeC--CCeEEE--EeCCCCceeEEeeCCCc------------------cEeEEE------
Q 005913 421 --SGPVYSASFSPLGDFILSSSA--DTTIRL--WSTKLNANLVCYKGHNY------------------PVWDVQ------ 470 (670)
Q Consensus 421 --~~~V~~l~~sp~~~~L~s~s~--Dg~I~l--wd~~~~~~~~~~~~h~~------------------~V~~l~------ 470 (670)
......++++|||++++++.. +..|.+ +|+.+ +..+..... .+..+.
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 012346789999998888764 356888 88765 222211000 000000
Q ss_pred --------------------EecCCCEEEEEECCCcEEEEECCCCc--eeEEecc----------cCCCeeEEEEcCCCC
Q 005913 471 --------------------FNPQGHYFASSSHDRTARIWSMDRIQ--PLRIMAG----------HLSDVDCVRWHINCN 518 (670)
Q Consensus 471 --------------------~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~~~~----------~~~~v~~v~~~p~~~ 518 (670)
.++++..++..+. +.+.+.|+.... .+..+.. .......++++|+++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred cCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 0233333333334 566666664322 1111110 011122378999999
Q ss_pred EEEEEEc-C--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEeCCCCeeeEEeeC
Q 005913 519 YIATGSS-D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPLMG 587 (670)
Q Consensus 519 ~l~tgs~-d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~-~dg~I~iwDl~~~~~~~~~~~ 587 (670)
.++++.. . +.+.++|+.+++.+..+.... ....++|+|||+ .+++.. .++.|.++|+.+++.+.++..
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 8887643 2 356699999999988776443 578999999998 556666 599999999999999999875
Q ss_pred CCcceEEEEEcC
Q 005913 588 HTSCVWTLAYSC 599 (670)
Q Consensus 588 h~~~V~sl~~s~ 599 (670)
... .+.+++.+
T Consensus 356 g~~-P~~i~~~~ 366 (368)
T 1mda_H 356 DKG-PESLSVQN 366 (368)
T ss_dssp CSC-CCEEECCC
T ss_pred CCC-CCEEEeec
Confidence 543 35666543
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=2.7e-06 Score=89.68 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=146.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~ 441 (670)
++..+++++.++.|..+|..+....-..... . .....++ .. +..++.++.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~------~~~~~p~----~~--~~~v~v~~~ 151 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------G------EALSRPV----VS--DGLVLIHTS 151 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECS------------------S------CCCSCCE----EE--TTEEEEECT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------C------ceEcCCE----EE--CCEEEEEcC
Confidence 4567788889999999998753221100000 0 0011122 11 457888889
Q ss_pred CCeEEEEeCCCCceeEEeeCCCccE-----eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC----eeE--
Q 005913 442 DTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD----VDC-- 510 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~----v~~-- 510 (670)
++.|..+|..+++.+..+....... ...... +..+++++.++.+..+|..+++.+......... +..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 9999999999998887766432211 112222 456788888999999999999887766532110 000
Q ss_pred -EEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC
Q 005913 511 -VRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587 (670)
Q Consensus 511 -v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~ 587 (670)
+...| .+..+++++.++.+..+|..+|+.+..... .....+.. ++..++.++.+|.|..+|..+++.+.....
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 00111 356788888899999999999998866542 33444444 366888888999999999999998766652
Q ss_pred C-CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 588 H-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 588 h-~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
. ...+.+... .+..|+.++.+|.|.++|..+++..
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 2 222233333 2567888999999999999887654
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.80 E-value=2.1e-06 Score=90.51 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=128.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe---
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV--- 508 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v--- 508 (670)
++..+++++.++.|..+|..+++.+..+............. +..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 36678888899999999999998877666543222222222 4578888899999999999998887765432211
Q ss_pred --eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-------eEEEEEcC--CCCEEEEEECCCeEEEEeCC
Q 005913 509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA 577 (670)
Q Consensus 509 --~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-------I~~l~~sp--~g~~l~sg~~dg~I~iwDl~ 577 (670)
...... +..+++++.++.|..+|..+|+.+......... +..+..+| .+..++.++.+|.+..+|..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 122222 457888888999999999999988776532110 00011112 35678888889999999999
Q ss_pred CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (670)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~ 626 (670)
+|+.+..... .....+.. ++..|+.++.+|.|..+|..++.....
T Consensus 258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 9988766542 23444444 366788888999999999988876543
No 245
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.79 E-value=9e-06 Score=83.20 Aligned_cols=227 Identities=8% Similarity=0.037 Sum_probs=141.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
......++|+++++++++-..++.|..|+.... ... .....+.+.++++.
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~-~~~~~~~p~gia~~ 80 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQI-HATVEGKVSGLAFT 80 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEE-EEECSSEEEEEEEC
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEE-EEeCCCCceeEEEc
Confidence 356789999999998777778899988886531 001 11122458899999
Q ss_pred CCCCEEEEEeCC-C-eEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEec----
Q 005913 431 PLGDFILSSSAD-T-TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA---- 502 (670)
Q Consensus 431 p~~~~L~s~s~D-g-~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~---- 502 (670)
++++++++.... + .|..++..+++....... .......++..+.+..+++...++.|..+|...+.. +....
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 999966655432 2 466677776664433221 122234445455554455444688899998875421 21111
Q ss_pred -----ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 503 -----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 503 -----~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
......+.+ +|++++|+++. ..+.|..||+.. +.. ...+.. ......++++++|+++++....+.|.+
T Consensus 161 ~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 161 RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 112234555 78887666554 567899999874 321 222221 134567899999988777777889999
Q ss_pred EeCCCCeee--EEeeCCCcceEEEEEc---CCCCEEEEEECCC
Q 005913 574 WDLASGRCV--TPLMGHTSCVWTLAYS---CEGSLLASGSADC 611 (670)
Q Consensus 574 wDl~~~~~~--~~~~~h~~~V~sl~~s---~~g~~l~sgs~Dg 611 (670)
+|.. ++.. ..+.......++++|. |+++.|+.++..+
T Consensus 238 ~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9975 6542 2333333568999998 8877777666543
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.74 E-value=3.4e-05 Score=89.99 Aligned_cols=276 Identities=10% Similarity=0.072 Sum_probs=172.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
...|.++...+++.+.+ |+.++-|.+|+..+......... .... ..-....|.++...
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~----------------~~~~-----~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS----------------PSNP-----KSISSNYIRSLAMD 271 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC----------------TTCT-----TSCSCSBEEEEEEC
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC----------------CCCc-----cccCCCeEEEEEEc
Confidence 45688888888776554 55444488888654211100000 0000 00123579999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~ 503 (670)
++|.+.+ |+.+| |.+|+..++........ ....|.++...++|. +..|+.++-|..|+..+.... .+..
T Consensus 272 ~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~ 347 (795)
T 4a2l_A 272 SQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRN 347 (795)
T ss_dssp TTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECC
T ss_pred CCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcC
Confidence 8887554 44454 89999876654332211 235699999998886 566777788999987654322 2221
Q ss_pred -------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--------CCCCeEEEEEcCCCCEEEEEECC
Q 005913 504 -------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 504 -------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~sg~~d 568 (670)
....|.++...++|+ |.+|+.++-|..||..++........ ....|.+++..++|+.|..|+.+
T Consensus 348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 234689999888876 55577787899999887765443211 23569999999999867778887
Q ss_pred CeEEEEeCCCCeeeEEee----CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 569 GTIMMWDLASGRCVTPLM----GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~----~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
+-|.+||..+++...... .+...|.++...++|++.+.. . +.|.+|+..++...... . . . ..-.-
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~-~-~--~-----~~~~~ 495 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIE-K-E--K-----DGTPV 495 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECC-B-C--T-----TCCBC
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcc-c-c--c-----ccccc
Confidence 789999988876433221 134579999999888866554 4 45888987664321000 0 0 0 00011
Q ss_pred CCCCeEEEEEecCCcEEEEe
Q 005913 645 KSTPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 645 ~~~~V~~l~fs~~~~~La~g 664 (670)
....|.++...++|.+.++.
T Consensus 496 ~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEe
Confidence 23568899998888766544
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=4.3e-07 Score=99.62 Aligned_cols=232 Identities=11% Similarity=0.028 Sum_probs=159.5
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE-c-CCCCEEE
Q 005913 361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL 437 (670)
Q Consensus 361 ~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~L~ 437 (670)
+||++|.+... ++.|.+.|+.+...... + .+ ........+++ + |++.+++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i-------------------------i-~i-p~g~~phg~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI-------------------------L-EI-PNAKGIHGLRPQKWPRSNYVF 151 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE-------------------------E-EC-SSCCSEEEEEECCSSBCSEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE-------------------------E-eC-CCCCCCcceeeeecCCCcEEE
Confidence 48888887765 45699999886332110 0 11 12234678887 4 8999988
Q ss_pred EEe------------------CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--------------
Q 005913 438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-------------- 485 (670)
Q Consensus 438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-------------- 485 (670)
+++ .++.+.++|..+.+....+.-.. .-..++++|+|.++++.+.+.
T Consensus 152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 885 24579999999988877766433 345688999999998888543
Q ss_pred ------------------------cEEEEECCC--Cce-eEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC
Q 005913 486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG 537 (670)
Q Consensus 486 ------------------------~v~lwd~~~--~~~-~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~ 537 (670)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 467777776 444 444442 24567899999999888766 5789999999865
Q ss_pred c------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----------CeeeEEeeCCCcce---
Q 005913 538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV--- 592 (670)
Q Consensus 538 ~------------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----------~~~~~~~~~h~~~V--- 592 (670)
+ .+.... -......++|+|+|...++...|+.|.+||+.+ ...+..+..|-.+-
T Consensus 310 ~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp HHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred ccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 3 233332 234578899999995555677899999999977 55677776665432
Q ss_pred --EEEEEcCCCCEEEEEEC---CCc----------EEEEeCCCCc
Q 005913 593 --WTLAYSCEGSLLASGSA---DCT----------VKLWDVTTST 622 (670)
Q Consensus 593 --~sl~~s~~g~~l~sgs~---Dg~----------I~iwd~~~~~ 622 (670)
..+.++|||++|+++.. |+. -.++|+..++
T Consensus 389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 12345899999998863 332 1789995443
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.72 E-value=5.5e-07 Score=102.77 Aligned_cols=272 Identities=11% Similarity=0.032 Sum_probs=156.7
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCcc
Q 005913 356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSG 422 (670)
Q Consensus 356 ~l~fs~-d~~~La~g~~dg-----------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 422 (670)
++++.+ ++++++.|+.+. .+.+||..+... ...... ..+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--------------------------~~~~~~~~~~~~ 243 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--------------------------SDRTVTVTKHDM 243 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--------------------------CCCEEEECSCCC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--------------------------EeCcccCCCCCC
Confidence 556667 888999887543 477787664211 111111 12333
Q ss_pred CEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEE-CC-----CcEEEEECCC
Q 005913 423 PVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDR 494 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s-~d-----g~v~lwd~~~ 494 (670)
...++++..++.+++.|+. ++.+.+||..+.+....-..+.. .-.+++..++|+.++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3445678889999998884 56899999887654332221111 112455667899999998 44 5789999987
Q ss_pred CceeEEe----cccCCCeeEEEEcCCCCEEEEEEcCC---------cEEEEECCCCcEEEEEecCCC---------CeEE
Q 005913 495 IQPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHRS---------MILS 552 (670)
Q Consensus 495 ~~~~~~~----~~~~~~v~~v~~~p~~~~l~tgs~dg---------~I~iwd~~~~~~~~~~~~h~~---------~I~~ 552 (670)
.+-...- ......-....+..++..++.|+.+| .+..||..+.........+.. .-.+
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a 403 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 403 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence 6533320 00000000011224555555665443 567888887765433322211 2344
Q ss_pred EEEcC-CCCEEEEEECCC-----------eEEEEeCCCCeeeEEe--eCCCcce-EEEEEcCCCCEEEEEECC-------
Q 005913 553 LAMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCV-WTLAYSCEGSLLASGSAD------- 610 (670)
Q Consensus 553 l~~sp-~g~~l~sg~~dg-----------~I~iwDl~~~~~~~~~--~~h~~~V-~sl~~s~~g~~l~sgs~D------- 610 (670)
+.|.. ++++++.|+.++ .|.+||..+..-.... ..+.... .+++..|++++++.|+.+
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 55543 677888887543 6888998776543322 1122222 345667899999999865
Q ss_pred ----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913 611 ----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666 (670)
Q Consensus 611 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~ 666 (670)
..+.+||..+.. +..+...+.......+..+.++|+++++|+.
T Consensus 484 ~~~~~~v~~ydp~t~~-------------W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDT-------------FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTE-------------EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCc-------------eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 467888875532 2223333333333445566799999999985
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=3.2e-06 Score=83.36 Aligned_cols=186 Identities=14% Similarity=0.100 Sum_probs=132.1
Q ss_pred cCcc--CEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECC
Q 005913 419 GHSG--PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMD 493 (670)
Q Consensus 419 ~h~~--~V~~l~~sp~~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~ 493 (670)
.|.. -...+.|+ ++.+..+++.+| .|+.+|+.+++.+....... ........+++..+.... .++.+.+||..
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 4543 35789998 666666777766 89999999999888776543 233333333455555544 58899999999
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~d 568 (670)
+.+.+..+.... ....+++++..|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|+..+..-.+
T Consensus 116 t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 116 NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 999998887432 222333577777777667889999999999888765422 234557776 77655555578
Q ss_pred CeEEEEeCCCCeeeEEeeCC------------CcceEEEEEcCCCCEEEEEECC
Q 005913 569 GTIMMWDLASGRCVTPLMGH------------TSCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h------------~~~V~sl~~s~~g~~l~sgs~D 610 (670)
+.|.+.|..+++.+..+... ....+.++|+|+++.|+..+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 89999999999998877532 1346889999988877777654
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.68 E-value=4.4e-05 Score=89.04 Aligned_cols=269 Identities=9% Similarity=-0.009 Sum_probs=170.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|.++...++|. |.+|+.++-|..|+........... .... ..-....|.++...+
T Consensus 310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----------------~~~~-----~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----------------IPYK-----NSLSDNVVSCIVEDK 366 (795)
T ss_dssp SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-----------------CTTS-----SSCSCSSEEEEEECT
T ss_pred CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-----------------CCCC-----CCCCCCeeEEEEECC
Confidence 5699999999887 4557777778888754311100000 0000 001245699999988
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeC--------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~- 502 (670)
+|. |..|+.++-|..|+..++........ ....|.++...++|..+.+|+.++-|.+||..+++......
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 877 44567776799999886654332211 23568999998888857778887889999988765443322
Q ss_pred ---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913 503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM 573 (670)
Q Consensus 503 ---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~sg~~dg~I~i 573 (670)
.....|.++...++|+..+. +. +-+.+||..+++....... ....|.++...++|.+.+.. . +-|..
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~ 521 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV 521 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence 13457899998888875554 44 4588999887765432211 23578999999998866544 4 45888
Q ss_pred EeCCCCeeeEEee-------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913 574 WDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646 (670)
Q Consensus 574 wDl~~~~~~~~~~-------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (670)
||..++.. .+. .+...|.++..+++|.+.++.. . -|..||..+.... .... ...+ ..
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~---------~~gl--~~ 585 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNT---------TNGL--PN 585 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECG---------GGTC--SC
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCC---------CCCC--ch
Confidence 99877765 222 1235689999999988665443 4 5788887654211 0000 0011 12
Q ss_pred CCeEEEEEecCCcEEEEe
Q 005913 647 TPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 647 ~~V~~l~fs~~~~~La~g 664 (670)
..|.++...++|.+.+++
T Consensus 586 ~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 586 NVVYGILEDSFGRLWLST 603 (795)
T ss_dssp SCEEEEEECTTSCEEEEE
T ss_pred hheEEEEECCCCCEEEEc
Confidence 357888888888765544
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=5.8e-06 Score=85.20 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=126.4
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-C-------------------CccEeEEEEec-CCCEEEE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-H-------------------NYPVWDVQFNP-QGHYFAS 480 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h-------------------~~~V~~l~~sp-~g~~l~s 480 (670)
....+++|.++++++.++..++.|..|+..++... .+.. . ...+..+++.+ ++ .|++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence 34567889999987888888999999998765432 2221 0 12467899998 55 4555
Q ss_pred EECCCcEEEEECCCCceeEEecc-----cCCCeeEEEEcC-CCCEEEEEEc-----------------CCcEEEEECCCC
Q 005913 481 SSHDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSG 537 (670)
Q Consensus 481 ~s~dg~v~lwd~~~~~~~~~~~~-----~~~~v~~v~~~p-~~~~l~tgs~-----------------dg~I~iwd~~~~ 537 (670)
+...+.+..+|..++.. ..+.. .......+++.+ +|+..++... ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 65556688888775432 22221 123468899999 9987766432 367899998777
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEEC-----
Q 005913 538 ECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSA----- 609 (670)
Q Consensus 538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~----- 609 (670)
+....... ......++++|+|+.|+.+ +..+.|.+||+.... ....+....+ ...++++++|+++++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65433222 2335679999999976665 556899999987421 1111111223 788999999997777654
Q ss_pred -----CCcEEEEeCC
Q 005913 610 -----DCTVKLWDVT 619 (670)
Q Consensus 610 -----Dg~I~iwd~~ 619 (670)
.+.|..+|-.
T Consensus 254 ~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF 268 (322)
T ss_dssp TTSCEEEEEEEECTT
T ss_pred ccCCCccEEEEECCC
Confidence 4567777753
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=1.1e-05 Score=80.46 Aligned_cols=194 Identities=7% Similarity=0.010 Sum_probs=131.7
Q ss_pred EEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 354 LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 354 V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
...+.|++|+.+.++.+. ++.|+++|+.+....... .+..+ ...-.+++.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i--------------------------~l~~~-~fgeGi~~~- 74 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH--------------------------KMDDS-YFGEGLTLL- 74 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE--------------------------ECCTT-CCEEEEEEE-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE--------------------------ecCCC-cceEEEEEe-
Confidence 678999998754444433 688999998763321110 01111 122245555
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC-----
Q 005913 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL----- 505 (670)
Q Consensus 432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~----- 505 (670)
++.|. +.-.++.+.++|..+.+.+..+......-+. ++++|..++++..++.|.++|..+.+.+..+.-..
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 44554 4456889999999999888887643122233 55677777777778999999999988887776321
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-------------CCCeEEEEEcCCCCE-EEEEECCCeE
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MASGDEDGTI 571 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~I~~l~~sp~g~~-l~sg~~dg~I 571 (670)
..++.+.|. ++...+....++.|.+.|..+++.+..+... ......|+|+|+++. ++++...+.+
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 246778887 6754444446789999999999998887532 135689999999865 5556678889
Q ss_pred EEEeCCCC
Q 005913 572 MMWDLASG 579 (670)
Q Consensus 572 ~iwDl~~~ 579 (670)
.+.++...
T Consensus 231 ~~i~l~~~ 238 (266)
T 2iwa_A 231 FEIKLHLV 238 (266)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 88887653
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=1.4e-05 Score=78.17 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=130.0
Q ss_pred cCc--cCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeeCCCccE-eEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 419 GHS--GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 419 ~h~--~~V~~l~~sp~~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.|. .-...+.|++ +.+..+++.+ +.|+.+|+.+++.+.......... -.++.. .++.+...-.++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 454 4567999986 5555566664 489999999999888776433221 233443 23344444578999999999
Q ss_pred CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 005913 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~d 568 (670)
+.+.+..+.... .-..++ +++..|+.+..++.|.++|..+.+.++.+.... ..+..+.+. +|+..+..-.+
T Consensus 94 tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 94 TLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp TTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred cCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 999999887433 223444 567777777778899999999999888776432 235566665 66655555568
Q ss_pred CeEEEEeCCCCeeeEEeeCC------------C-cceEEEEEcCCCCEEEEEECC
Q 005913 569 GTIMMWDLASGRCVTPLMGH------------T-SCVWTLAYSCEGSLLASGSAD 610 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h------------~-~~V~sl~~s~~g~~l~sgs~D 610 (670)
..|.+.|..+|+.+..+... . ...+.++|+|+++.|+..+.-
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 89999999999998877521 1 356789999987766666643
No 254
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.60 E-value=0.00045 Score=71.28 Aligned_cols=268 Identities=13% Similarity=0.063 Sum_probs=149.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee-eecCccCEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSA 427 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l 427 (670)
.....+.++.|.+++..+|+| ..|.| ++..+....-. .... .......+.++
T Consensus 33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~-------------------------~~~~~~~~~~~~~~~i 85 (327)
T 2xbg_A 33 PTTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWE-------------------------PRTLVLDHSDYRFNSV 85 (327)
T ss_dssp SCSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCE-------------------------ECCCCCSCCCCEEEEE
T ss_pred CCCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCe-------------------------ECCCCCCCCCccEEEE
Confidence 345579999999888888866 56654 23322211000 0000 01123468888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-Eecc
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAG 503 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-~~~~ 503 (670)
.|.+ +..++ ++.++.|.. ..+.++.-.... .+...+..+.+.+++..++++ .++.|.. ..+.++.-. ...+
T Consensus 86 ~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~ 160 (327)
T 2xbg_A 86 SFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE 160 (327)
T ss_dssp EEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS
T ss_pred EecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC
Confidence 9986 44444 455665544 333333322222 133457788887777666655 4554422 233343322 2234
Q ss_pred cCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
....+..+++.+++.+++++...+..+-+|- .+.+.+ -......+..+++++++..+ .++.+|.+++.+...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe
Confidence 5567889999999888877754444444442 233333 23445678999999998765 455678888775333433
Q ss_pred eEEee-C---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913 582 VTPLM-G---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657 (670)
Q Consensus 582 ~~~~~-~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~ 657 (670)
-..+. . +...+.++.+.+++.+++++. +|.| .+..+.+. .+..+.........++++.|.++
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~------------tW~~~~~~~~~~~~~~~v~~~~~ 303 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ------------TWQQDVDVKKVPSNFYKILFFSP 303 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS------------SCEECGGGTTSSSCCCEEEEEET
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc------------ccEEcCccCCCCCCeEEEEEECC
Confidence 22222 1 224588999998877666654 6766 34444332 12222221122356888999877
Q ss_pred CcEEEEee
Q 005913 658 NLLFAAGA 665 (670)
Q Consensus 658 ~~~La~gs 665 (670)
+.++++|.
T Consensus 304 ~~~~~~G~ 311 (327)
T 2xbg_A 304 DQGFILGQ 311 (327)
T ss_dssp TEEEEECS
T ss_pred CceEEEcC
Confidence 77666654
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.59 E-value=2.7e-05 Score=79.56 Aligned_cols=227 Identities=10% Similarity=0.032 Sum_probs=139.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~ 499 (670)
....+++|+++++++++...++.|..||.... ....+. .......+++.++|+.+++..... .|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56788999999997777778899999998753 333333 234688999999998666554332 46677777766543
Q ss_pred Eecc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEec---------CCCCeEEEEEcCCCCEEEEE-EC
Q 005913 500 IMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIG---------HRSMILSLAMSPDGRYMASG-DE 567 (670)
Q Consensus 500 ~~~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~---------h~~~I~~l~~sp~g~~l~sg-~~ 567 (670)
.... .......++..+.+..+++...++.|+.+|..+++. +....+ .-.....+ +|+++.|+.+ ..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122334555555555455544588999999876532 211111 11234455 8888766655 45
Q ss_pred CCeEEEEeCCC-Cee--eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913 568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644 (670)
Q Consensus 568 dg~I~iwDl~~-~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (670)
.+.|..||+.. +.. ...+.. ......++++++|+++++....+.|.+++.. +... .+.....
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~-------------~~~~~~~ 252 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT-------------IIAQAEQ 252 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE-------------EEECGGG
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE-------------EEeeccc
Confidence 68999999874 321 111111 1235678999999988887778899999864 2210 0111222
Q ss_pred CCCCeEEEEEe---cCCcEEEEeeCC
Q 005913 645 KSTPVYSLQFS---RRNLLFAAGALS 667 (670)
Q Consensus 645 ~~~~V~~l~fs---~~~~~La~gs~d 667 (670)
......+++|. +++..|.+++..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 23457899998 786655555443
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=6.5e-06 Score=93.94 Aligned_cols=185 Identities=9% Similarity=0.057 Sum_probs=128.4
Q ss_pred CCeEEEEeCCCCceeEEeeCCC-------------------------------ccEeEEEEecCCCEEEEEECCC-----
Q 005913 442 DTTIRLWSTKLNANLVCYKGHN-------------------------------YPVWDVQFNPQGHYFASSSHDR----- 485 (670)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------~~V~~l~~sp~g~~l~s~s~dg----- 485 (670)
+|.|+.+|..+++.+-.+.... .....+++.|.+..++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999887765310 0012467888888888887766
Q ss_pred --------------cEEEEECCCCceeEEecc--cC-------CCeeEEEEcCCCC---EEEEEEcCCcEEEEECCCCcE
Q 005913 486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC 539 (670)
Q Consensus 486 --------------~v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~ 539 (670)
.|..+|.++++.+..+.. |. .+.....+..+|+ .+++++.+|.++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 399999999998887763 22 2223333334665 688899999999999999998
Q ss_pred EEEEecCC------------CCe------------------------EEEEEcCCCCEEEEEE-----------------
Q 005913 540 VRIFIGHR------------SMI------------------------LSLAMSPDGRYMASGD----------------- 566 (670)
Q Consensus 540 ~~~~~~h~------------~~I------------------------~~l~~sp~g~~l~sg~----------------- 566 (670)
+....... .++ ..++++|+...++...
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 84432211 000 1267888766665421
Q ss_pred -------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 567 -------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.+|.|..||+.+++.+-+...+. ++....+...+.+++.++.||.|++||..+++.....
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 23889999999999887665332 2333344456788999999999999999998765433
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=9.3e-06 Score=80.09 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=132.1
Q ss_pred eeEEeeCCCc--cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcE
Q 005913 455 NLVCYKGHNY--PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTV 529 (670)
Q Consensus 455 ~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I 529 (670)
.+..+. |.. -...+.|+ ++..+.+++.+| .|+.+|+.+++.+..+... .........+.++.|...+ .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 344553 432 24788898 677777777766 9999999999998887643 2333322233455555544 58899
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC--C---cceEEEEEcCCCCEE
Q 005913 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--T---SCVWTLAYSCEGSLL 604 (670)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h--~---~~V~sl~~s~~g~~l 604 (670)
.+||..+.+.+..+.... ....++++++.|+.+..++.|.++|..+.+.+.++... . ..+..+.|. +|.++
T Consensus 110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999999999887533 22344467887777777889999999999888877642 2 234557776 77766
Q ss_pred EEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 605 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
+..-.++.|.+.|..++.............. .........-.+.++|+|++..|.+.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~---~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAE---AGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGG---SCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccc---cccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6665788999999999876544432110000 000112234578999999765554444
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=1.1e-05 Score=79.44 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=128.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe--EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~--~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~ 499 (670)
.-...+.|+ ++.+..+++.+|.|+.+|+.+++.+..+ -.. ... .+++.. +..++..-.++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 345788898 3566677888899999999999988776 222 233 344432 2334444468899999999999998
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
.+.... .-..++ +++..|+.+..++.|+++|..+.+.+..+.... ..+..+.|. +|+..+..-.++.|.+.
T Consensus 131 ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 887432 223343 578888888778999999999999888775422 234667777 77655555568899999
Q ss_pred eCCCCeeeEEeeCC-------------CcceEEEEEcCCCCEEEEEEC
Q 005913 575 DLASGRCVTPLMGH-------------TSCVWTLAYSCEGSLLASGSA 609 (670)
Q Consensus 575 Dl~~~~~~~~~~~h-------------~~~V~sl~~s~~g~~l~sgs~ 609 (670)
|..+++.+..+... ....+.|+|+|+++.|+..+.
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999988877521 135688999997665555543
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.56 E-value=0.00011 Score=76.73 Aligned_cols=201 Identities=10% Similarity=-0.024 Sum_probs=132.5
Q ss_pred ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCcee
Q 005913 421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
...+.+++|++.+..|. +-...+.|+.+++..................+++.+.+ ..+++-...+.|.+.+++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 34578999998666655 44567889999998665444443333345688998754 44555556789999999866544
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEE-cC-CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs-~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD 575 (670)
..+.........++++|.+..|+... .. +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 44545556789999999666555544 34 7888888764433322222334578999998777666654 567899999
Q ss_pred CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
+........+.........+++ .++.++++-...+.|..++..++.
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 8754333333333445677888 356666666677888888855544
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=2.1e-05 Score=87.95 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=128.2
Q ss_pred CEEEEEeC------CCeEEEEeCCCCceeEEeeCCCcc-------------------------------------E-eEE
Q 005913 434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV 469 (670)
Q Consensus 434 ~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~l 469 (670)
..+++++. ++.|+.+|..+++.+-.+...... + ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555554 789999999999988766542211 1 135
Q ss_pred EEecCCCEEEEEECC----------------CcEEEEECCCCceeEEeccc--C-------CCeeEEEEcCCCC---EEE
Q 005913 470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGH--L-------SDVDCVRWHINCN---YIA 521 (670)
Q Consensus 470 ~~sp~g~~l~s~s~d----------------g~v~lwd~~~~~~~~~~~~~--~-------~~v~~v~~~p~~~---~l~ 521 (670)
++.+....++.++.+ +.|..+|.++++.+..+... . ....-+...++|+ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 666765666666532 35999999999988776532 1 1111122234674 577
Q ss_pred EEEcCCcEEEEECCCCcEEEEEecCC-------------CCe--------------------------EEEEEcCCCCEE
Q 005913 522 TGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYM 562 (670)
Q Consensus 522 tgs~dg~I~iwd~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~sp~g~~l 562 (670)
.++.+|.++++|..+|+.+..+.... .++ ..++++|+...+
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 400 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL 400 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence 88899999999999999887654221 111 235788887777
Q ss_pred EEEE-------------------------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913 563 ASGD-------------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 563 ~sg~-------------------------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~ 605 (670)
++.. .+|.|..||+.+++.+-++... ..+.+..+...+..++
T Consensus 401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~ 479 (571)
T 2ad6_A 401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVW 479 (571)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEE
T ss_pred EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEE
Confidence 6653 3578999999999988766532 2222222333466788
Q ss_pred EEECCCcEEEEeCCCCcccccc
Q 005913 606 SGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.++.||.|++||..+++.....
T Consensus 480 ~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 480 YATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCeEEEEECCCCCEEEEE
Confidence 8999999999999998765433
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00013 Score=77.20 Aligned_cols=202 Identities=10% Similarity=-0.029 Sum_probs=133.9
Q ss_pred ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCcee
Q 005913 421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
...+.+++|++.+..|+ +-...+.|+.+++........+.........+++.+.+. .+++-...+.|.+.+++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 35678999998666555 545678899999986654444433333456789987544 4455556778999888765544
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEc-C-CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~-d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD 575 (670)
..+.........++++|.+..|+.... . +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 455555567899999987776665543 3 6788888765443333333344578999998766666554 567899999
Q ss_pred CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+........+.........+++ .++.++++-...+.|..++..++..
T Consensus 275 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 275 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 8654433333333445678888 4556667766778898888555543
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=1.5e-05 Score=90.99 Aligned_cols=152 Identities=11% Similarity=0.137 Sum_probs=106.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCC----ccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEec
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~~ 502 (670)
+..++.++.|+.|..+|..+++.+-.+.... ..+.+.-.-.++ .+++++. +|.|+.+|..+++.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 5678888899999999999999887766421 111110001134 4555543 5899999999999887764
Q ss_pred ccC-------------------------------CCeeEEEEcCCCCEEEEEEcCC-------------------cEEEE
Q 005913 503 GHL-------------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLW 532 (670)
Q Consensus 503 ~~~-------------------------------~~v~~v~~~p~~~~l~tgs~dg-------------------~I~iw 532 (670)
... .....+++.|....+++++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 0112468888888998888776 39999
Q ss_pred ECCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 533 DVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 533 d~~~~~~~~~~~~--h~-------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
|..+|+.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+...
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 9999999988764 22 2333333344675 6889999999999999999988443
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=8.7e-05 Score=73.43 Aligned_cols=199 Identities=9% Similarity=0.073 Sum_probs=133.3
Q ss_pred eeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.+.+-...+.+++|+|++..|+ +...++.|...|.. ++.+..+.- .....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445567899999999877555 56778899999998 777666542 22457789999988877776677889999876
Q ss_pred CCce---eEEec------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEEe-------cCCCCeEEEE
Q 005913 494 RIQP---LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA 554 (670)
Q Consensus 494 ~~~~---~~~~~------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~-------~h~~~I~~l~ 554 (670)
.... +.... ........++|+|.++.|+++.......+|.+. ....+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 123456899999999888887766555555543 122223221 1233578999
Q ss_pred EcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 555 ~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
++|. +.+++.......|.++|.. |+.+..+.-.. ...-.|+|.++|+++++ +..+.+.++.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 9995 5566677778889999965 55655554221 24578999999985555 6666555554
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=1.1e-05 Score=93.40 Aligned_cols=239 Identities=9% Similarity=0.010 Sum_probs=134.5
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-CccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 353 GLNCASIS-QDGSLVAGGFS-DS----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 353 ~V~~l~fs-~d~~~La~g~~-dg----~I~Iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+...+|| |||++||.+.. +| .|+++++.+. ... ...+. ....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------~~~~~---~~~~ 224 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------ADKVS---GTNG 224 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---------------------------CCCEE---EECS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---------------------------Ccccc---Ccee
Confidence 57889999 99999986543 23 4999998752 100 00011 1124
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--eEEeeC-CCccEeEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 005913 426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDR 494 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~ 494 (670)
+++|+|||+.|+..+.| ..|+++++.++.. ...+.. +.....++.|+|+|++|+..+. ...|+++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 57899999988877665 3688888887642 344432 2334567899999999887663 34688889887
Q ss_pred Cc-ee--EEec-ccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEE-EecCCC--CeEEEEEcCCCCEEE
Q 005913 495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRS--MILSLAMSPDGRYMA 563 (670)
Q Consensus 495 ~~-~~--~~~~-~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~-~~~h~~--~I~~l~~sp~g~~l~ 563 (670)
+. .. +.+. ........+.|+..+.+++.+..+ ..|..+|+.++..... +..+.. .+..+.+. .+.+++
T Consensus 305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~ 383 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV 383 (751)
T ss_dssp CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence 52 22 3333 334445566665444444444443 3677778765322222 233433 34455554 234555
Q ss_pred EEECCCe--EEEEeC-------CCCeeeEEeeCC-CcceEEEEE----cCCCC-EEEEEECC---CcEEEEeCCCCc
Q 005913 564 SGDEDGT--IMMWDL-------ASGRCVTPLMGH-TSCVWTLAY----SCEGS-LLASGSAD---CTVKLWDVTTST 622 (670)
Q Consensus 564 sg~~dg~--I~iwDl-------~~~~~~~~~~~h-~~~V~sl~~----s~~g~-~l~sgs~D---g~I~iwd~~~~~ 622 (670)
+...+|. |.++|+ ..+..+..+... ...+..+.+ ++++. ++++.+.. +.+..+|+.++.
T Consensus 384 ~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 384 AGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6667775 556665 333313333211 122334433 34554 44444433 457777776554
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00076 Score=69.17 Aligned_cols=201 Identities=8% Similarity=-0.054 Sum_probs=128.8
Q ss_pred ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCC
Q 005913 421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDR 494 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~ 494 (670)
...+.+++|++.+..|. +-...+.|..+++.. ......+...-.....+++.+.+. .+++-...+.|.+++++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 45678999998766555 445568999999876 222222332223457899987544 445556778999999886
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGT 570 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~-~dg~ 570 (670)
......+.........++++|.+..|+.+... +.|..+++.. .....+ ...-.....++++|++..|+.+. ..+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 54444444445678899999977666655543 6888888753 333333 23334678999999877776655 5679
Q ss_pred EEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 571 IMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 571 I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
|..+|+........... .......+++. .+.++++-...+.|..++..++..
T Consensus 188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 99999874332222221 22345778885 466666666778899998765543
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.43 E-value=5.8e-05 Score=84.55 Aligned_cols=186 Identities=14% Similarity=0.081 Sum_probs=124.0
Q ss_pred CCCeEEEEeCCCCceeEEeeCCCcc-------------------------------------Ee-EEEEecCCCEEEEEE
Q 005913 441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS 482 (670)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~l~~sp~g~~l~s~s 482 (670)
.+|.|+.+|..+++.+-.+...... +| ..++.+....++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3799999999999988766542211 11 345667677777776
Q ss_pred CC----------------CcEEEEECCCCceeEEecccCCC---------eeEEEEc-CCC---CEEEEEEcCCcEEEEE
Q 005913 483 HD----------------RTARIWSMDRIQPLRIMAGHLSD---------VDCVRWH-INC---NYIATGSSDKTVRLWD 533 (670)
Q Consensus 483 ~d----------------g~v~lwd~~~~~~~~~~~~~~~~---------v~~v~~~-p~~---~~l~tgs~dg~I~iwd 533 (670)
.+ +.|..+|.++++.+..+...... ..-+... .+| ..++.++.+|.++++|
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence 55 38999999999988777642211 1112222 567 5677788999999999
Q ss_pred CCCCcEEEEEecCC-------------CCe--------------------------EEEEEcCCCCEEEEEE--------
Q 005913 534 VSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYMASGD-------- 566 (670)
Q Consensus 534 ~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~sp~g~~l~sg~-------- 566 (670)
..+|+.+....... .++ ..++++|+..++++..
T Consensus 340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (599)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence 99999887654211 111 2456777766655431
Q ss_pred -------------------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913 567 -------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (670)
Q Consensus 567 -------------------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i 615 (670)
.+|.|..||+.+++.+-+.... .++.+-.....+.+++.++.||.|+.
T Consensus 420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEE
Confidence 3478999999999887665421 11221112235677888999999999
Q ss_pred EeCCCCcccccc
Q 005913 616 WDVTTSTKVLKT 627 (670)
Q Consensus 616 wd~~~~~~~~~~ 627 (670)
||..+++.+.+.
T Consensus 499 ~D~~tG~~lW~~ 510 (599)
T 1w6s_A 499 RDSDTGDLLWKF 510 (599)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999998866544
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=6.2e-05 Score=80.99 Aligned_cols=235 Identities=9% Similarity=0.036 Sum_probs=139.8
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
....++|+| ++..|.++...+.|+.+++... .+..+.........++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~ 188 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTH 188 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeC
Confidence 357889998 4555555544478888887641 1222233445688999999
Q ss_pred CCCEEEEEeC-CC----eEEEEeCCCCcee--EEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec-
Q 005913 432 LGDFILSSSA-DT----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (670)
Q Consensus 432 ~~~~L~s~s~-Dg----~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~- 502 (670)
++++|+.+.. ++ .+..++.. +... ..+.. ......++++| +|..+++-..++.|..++.+.+.......
T Consensus 189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 9996666554 22 23334432 2221 22222 22356788999 67766666677899999998765422222
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC--CcE--EEEEecC---------------CCCeE-EEEEc-----
Q 005913 503 GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGH---------------RSMIL-SLAMS----- 556 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h---------------~~~I~-~l~~s----- 556 (670)
+.......++|+|++++|+.+ ...+.|+.++... +.. +..+.+. -.... .++..
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~ 346 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYK 346 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGT
T ss_pred CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccc
Confidence 222457789999999965554 4567899987653 221 2222221 01122 45553
Q ss_pred ---CCCCEEEEEECCCeEEEEeCCCCeeeEEeeC----C----C---------cceEEEEEcC-CCCEEEEEECCCcEEE
Q 005913 557 ---PDGRYMASGDEDGTIMMWDLASGRCVTPLMG----H----T---------SCVWTLAYSC-EGSLLASGSADCTVKL 615 (670)
Q Consensus 557 ---p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~----h----~---------~~V~sl~~s~-~g~~l~sgs~Dg~I~i 615 (670)
++|.++++-...+.|+.+| ..|......-. . . .....+++++ ++.++++-..++.|+.
T Consensus 347 ~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 347 GSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp TSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred ccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 3465666555678899998 45643322211 0 1 1478899999 4666666666778888
Q ss_pred EeCC
Q 005913 616 WDVT 619 (670)
Q Consensus 616 wd~~ 619 (670)
++++
T Consensus 426 i~~e 429 (430)
T 3tc9_A 426 IGYE 429 (430)
T ss_dssp EEEC
T ss_pred EccC
Confidence 7753
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00029 Score=81.80 Aligned_cols=280 Identities=11% Similarity=0.010 Sum_probs=165.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
...|.++...++|. |.+|+..+-|.+++........... .....+.... ....-....|.++...
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~--------~~f~~~~~~~------~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ--------IRFEFIREGD------NNYSLSNASARYIFQD 321 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCS------STTSBSSSCEEEEEEC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec--------cccccccCCC------CCCCCCCCeEEEEEEe
Confidence 35699999988876 4556665668888876421110000 0000000000 0001234679999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEee---------CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYK---------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---------~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~ 501 (670)
++|. |..|+.++-|..|+..+........ .....|.++...++|. +..|+.++-|..|+..++......
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-
T ss_pred CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEcc
Confidence 8886 4556666668999887554322211 0235688898887776 556676677999997654322111
Q ss_pred ---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913 502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 502 ---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl 576 (670)
......|.++...+++++ .+|+.++-|..+|..+++...... .....|.++...++|.+.+ |+. +-|..||.
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~ 476 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDL 476 (781)
T ss_dssp ----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEES
T ss_pred CCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeC
Confidence 123356888888877764 457776779999988776543221 1345799999988886544 455 56899998
Q ss_pred CCCeeeEEeeCC-----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913 577 ASGRCVTPLMGH-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 577 ~~~~~~~~~~~h-----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
.+++........ ...|.++...++|.+.+. +.++-|..||..+..... .. . .-.-....|.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~-~~---------~--~~~l~~~~i~~ 543 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK-FN---------Q--YEGFCSNTINQ 543 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE-EC---------T--TTTCSCSCEEE
T ss_pred CCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE-cc---------C--CCCCCCCeeEE
Confidence 876543322222 367899999998886554 443447778876542110 00 0 00112346889
Q ss_pred EEEecCCcEEEE
Q 005913 652 LQFSRRNLLFAA 663 (670)
Q Consensus 652 l~fs~~~~~La~ 663 (670)
+...++|.+.++
T Consensus 544 i~~d~~g~lWi~ 555 (781)
T 3v9f_A 544 IYRSSKGQMWLA 555 (781)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCCEEEE
Confidence 988888876554
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00021 Score=82.99 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=151.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
...|.++...++|. |.+|+.++-|..|+............ +.. .....-....|.++...
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~----~~~~~l~~~~v~~i~~d 371 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ----MNESSLSNKVVSSVCDD 371 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C----CCSSCCSSSCEEEEEEC
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc----cccCCCCCcceEEEEEc
Confidence 35699999998887 55677777788888653211000000 000 00000123569999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--ccC
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL 505 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~ 505 (670)
++|.+ ..|+.++-|..|+..++...... ......|+++...++|. +..|+.++.+..++..+++...... ...
T Consensus 372 ~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 449 (781)
T 3v9f_A 372 GQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL 449 (781)
T ss_dssp TTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred CCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence 87764 45565556888987654321110 12345688998887776 4557777789999987664332221 134
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
..|.++...++++ |..|+. +-|..||..+++........ ...|.++...++|.+.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 6788998888776 444555 56899998877655433222 35799999999887655 4443447889987665
Q ss_pred eeEEeeC----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 581 CVTPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 581 ~~~~~~~----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.. .+.. ....|.++...++|.+.++. .+|.|..||..+.
T Consensus 527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp EE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred EE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 33 3321 23578999998888865554 4665588887654
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=2.3e-05 Score=77.34 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=127.8
Q ss_pred EeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe--eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV--DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (670)
Q Consensus 466 V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (670)
...+.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -. ... ..+++..+ ...++.-.++.+.+||..+.+.+..+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4678887 4667778888899999999999988877 22 333 33555432 33334446889999999999999988
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CC---cceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 544 ~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~---~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
..... -..+ +++++.|+.+..++.|.++|..+.+.+.++.. +. ..+..+.|. +|.+++..-.++.|.+.|.
T Consensus 133 ~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 133 RYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp ECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred eCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 75322 2333 36788888888899999999999998887753 22 234667777 7766665556889999999
Q ss_pred CCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEee
Q 005913 619 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA 665 (670)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs 665 (670)
.++............. ...........-.+.++|+|++ +++++|-
T Consensus 209 ~TG~V~~~Idl~~L~~--~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 209 ATGTVVGVIDASALTR--AVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCBEEEEEECHHHHH--HHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCcc--cccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9987654433210000 0000011233467899999965 5666653
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.40 E-value=0.0001 Score=71.92 Aligned_cols=199 Identities=13% Similarity=0.079 Sum_probs=129.4
Q ss_pred eEEeeCCC--ccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeEEecccCCC-eeEEEEcCCCCEEEE-EEcCCcE
Q 005913 456 LVCYKGHN--YPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIAT-GSSDKTV 529 (670)
Q Consensus 456 ~~~~~~h~--~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~t-gs~dg~I 529 (670)
+..+ .|. .-...+.|++ +..+.+.+.+ ..|+.+|+.+++.+..+...... -..+++. ++.|.. .-.++.+
T Consensus 12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence 4445 343 3356889986 5666666665 48999999999998887643222 1334443 444444 4568899
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CC---cceEEEEEcCCCCEE
Q 005913 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSCEGSLL 604 (670)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~---~~V~sl~~s~~g~~l 604 (670)
.+||..+.+.+..+...... ..+ .+++..|+.+..++.|.++|..+.+.+.++.- +. ..+..+.|. +|.++
T Consensus 88 ~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 99999999999988754322 334 45677777777789999999999988887763 22 245566765 67766
Q ss_pred EEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEe
Q 005913 605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAG 664 (670)
Q Consensus 605 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~g 664 (670)
+..-.+..|.+.|..++..........-..... ..-.....-.+.++++|++ +++++|
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEEC
Confidence 666567899999999987654443211100000 0001233457899999975 555555
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=1.3e-05 Score=92.84 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=116.9
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-ceeE-EeeCCCccEeEEEEecCCCEEEEEECC-----CcEEE
Q 005913 423 PVYSASFS-PLGDFILSSSA-DT----TIRLWSTKLN-ANLV-CYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI 489 (670)
Q Consensus 423 ~V~~l~~s-p~~~~L~s~s~-Dg----~I~lwd~~~~-~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~l 489 (670)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.+. .+. ....++.|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67789999 99998875432 33 5999999988 5321 111 123468899999888877765 36888
Q ss_pred EECCCCce--eEEecc-cCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCC--cE-EEEE-ecCCCCeEEEEEcCCC
Q 005913 490 WSMDRIQP--LRIMAG-HLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIF-IGHRSMILSLAMSPDG 559 (670)
Q Consensus 490 wd~~~~~~--~~~~~~-~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~--~~-~~~~-~~h~~~I~~l~~sp~g 559 (670)
+++.++.. ...+.. .......+.|+|+|++|+..+. ...|+++|+.++ .. ++.+ ....+...++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877643 233332 2234567899999999887663 346888999875 23 1333 3334555666655444
Q ss_pred CEEEEEECC----CeEEEEeCCCCeeeEE-eeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913 560 RYMASGDED----GTIMMWDLASGRCVTP-LMGHTS--CVWTLAYSCEGSLLASGSADCTVKLW 616 (670)
Q Consensus 560 ~~l~sg~~d----g~I~iwDl~~~~~~~~-~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iw 616 (670)
.+++....+ ..|..+|+.++..... +..|.. .+.++.+. .+.++++...+|..++|
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 444444333 3688888765322222 333433 45556665 34566677777765544
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.34 E-value=0.0015 Score=69.42 Aligned_cols=205 Identities=9% Similarity=-0.041 Sum_probs=135.4
Q ss_pred cCccCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEEC
Q 005913 419 GHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM 492 (670)
Q Consensus 419 ~h~~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~ 492 (670)
.....+.+++|++.+..|..+ ...+.|+.+++... ...............+++.+ .+..+++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999876665544 45788999998752 23333333444577899998 4555555566789999999
Q ss_pred CCCceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 005913 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG 569 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg 569 (670)
+.......+.........++++|.+.+|+.... .+.|...++............-.....|+++|++..|+.+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 876655555555567899999997766666543 36899998865444433333335678999999877777665 467
Q ss_pred eEEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913 570 TIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~ 624 (670)
.|..+|+........... .-....++++. .+.++++-...+.|..++..++...
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 899999865433322222 22345677773 4556666667788999986666443
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.0003 Score=73.40 Aligned_cols=210 Identities=8% Similarity=-0.048 Sum_probs=131.6
Q ss_pred ecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 348 INTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
.........++|++....|. +-...+.|..+++..... ............+
T Consensus 69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g 120 (349)
T 3v64_C 69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG 120 (349)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence 34445688999997655555 555678888888764211 0111111234467
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECC-CcEEEEECCCCceeEEecc
Q 005913 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHD-RTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 427 l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~d-g~v~lwd~~~~~~~~~~~~ 503 (670)
+++.+.+..| ++-...+.|.+.++............-.....+++.|.+..++ +-... +.|..++++..........
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 8888755544 5555678899999885544444444445578999999555544 44444 7888888875443333333
Q ss_pred cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.......++++|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 445678999998776666554 4678999998754433334333445677887 34555555556788888887677665
Q ss_pred EEee
Q 005913 583 TPLM 586 (670)
Q Consensus 583 ~~~~ 586 (670)
..+.
T Consensus 280 ~~i~ 283 (349)
T 3v64_C 280 EIIR 283 (349)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5554
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00018 Score=77.40 Aligned_cols=235 Identities=10% Similarity=0.073 Sum_probs=140.4
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 353 ~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
....++|+|+ ...|.++...+.|+.++.... .+..+.+......+++|+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd 190 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFT 190 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEEC
Confidence 3568899984 444555444488999987531 122222344568899999
Q ss_pred CCCCEEEEEeCC---C-eEEEEeCCCCce-eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-c-
Q 005913 431 PLGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-A- 502 (670)
Q Consensus 431 p~~~~L~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~- 502 (670)
++|+++++.... . .+...+...... ...+. .......++++| +|..+++-..++.|+.++..++.....+ .
T Consensus 191 ~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~ 269 (433)
T 4hw6_A 191 LNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM 269 (433)
T ss_dssp TTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC
T ss_pred CCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc
Confidence 999944444321 1 133333222111 01121 123356788999 6766666667788999999876652222 2
Q ss_pred ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CCcE--EEEEecC---------------CCCeEEEEE-------
Q 005913 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM------- 555 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~h---------------~~~I~~l~~------- 555 (670)
+....-..++|+|++++|+.+. ..+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 270 ~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 270 DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 1222234699999999665554 56789998865 3321 1223222 123567899
Q ss_pred --cCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC------------------CcceEEEEEc-CCCCEEEEEECCCcEE
Q 005913 556 --SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH------------------TSCVWTLAYS-CEGSLLASGSADCTVK 614 (670)
Q Consensus 556 --sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h------------------~~~V~sl~~s-~~g~~l~sgs~Dg~I~ 614 (670)
.++|.++++-...+.|+.++. +|.. ..+.+. -.....|+++ ++|.++++-..++.|+
T Consensus 350 ~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 350 GEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp TSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred ccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 677777777677789999984 5543 333221 1236789999 6777777666778888
Q ss_pred EEeCC
Q 005913 615 LWDVT 619 (670)
Q Consensus 615 iwd~~ 619 (670)
.++++
T Consensus 428 ~i~~e 432 (433)
T 4hw6_A 428 KIAPE 432 (433)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 87753
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.30 E-value=0.00016 Score=80.89 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=94.5
Q ss_pred CcEEEEECCCCceeEEecc--cCC-------CeeEEEEc-CCCC---EEEEEEcCCcEEEEECCCCcEEEEEecCC----
Q 005913 485 RTARIWSMDRIQPLRIMAG--HLS-------DVDCVRWH-INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHR---- 547 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~~--~~~-------~v~~v~~~-p~~~---~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---- 547 (670)
+.|..+|.++++.+..+.. |.. ...-+... .+|+ .++.++.+|.++++|..+|+.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5899999999999887753 211 11112222 4674 78889999999999999999887664331
Q ss_pred ---------CCe--------------------------------EEEEEcCCCCEEEEEE--------------------
Q 005913 548 ---------SMI--------------------------------LSLAMSPDGRYMASGD-------------------- 566 (670)
Q Consensus 548 ---------~~I--------------------------------~~l~~sp~g~~l~sg~-------------------- 566 (670)
.++ ..++++|+...+++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 1346677655555432
Q ss_pred -------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913 567 -------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (670)
Q Consensus 567 -------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 627 (670)
.+|.|..||+.+++.+-+...+. ++..-.....+.+++.|+.||.++.||..+++.+.+.
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 26889999999999876654322 2222112224678888999999999999998765443
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.27 E-value=0.00018 Score=80.62 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=102.0
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeeCCCc----cEeE-EEEecCCCEEEEEE------CCCcEEEEECCCCceeEEeccc
Q 005913 436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~g~~l~s~s------~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
|+.++.|+.|..+|..+++.+-....... .+.+ -.. .++ .+++++ .++.|+.+|..+++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 78888999999999999998776553221 1211 111 144 455554 3799999999999988766532
Q ss_pred CCCe--------------------------------------eEEEEcCCCCEEEEEEcCC----------------cEE
Q 005913 505 LSDV--------------------------------------DCVRWHINCNYIATGSSDK----------------TVR 530 (670)
Q Consensus 505 ~~~v--------------------------------------~~v~~~p~~~~l~tgs~dg----------------~I~ 530 (670)
.... ..+++.+....++.++.++ .|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 1110 1345667788888877653 899
Q ss_pred EEECCCCcEEEEEecCCC----------CeEEEEEc-CCC---CEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 531 LWDVSSGECVRIFIGHRS----------MILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 531 iwd~~~~~~~~~~~~h~~----------~I~~l~~s-p~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.+|..+|+.+..+..... ++. +... .+| ..++.++.+|.++++|..+|+.+....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 999999999988764321 121 2222 567 577889999999999999999886554
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.00042 Score=73.31 Aligned_cols=211 Identities=8% Similarity=-0.049 Sum_probs=133.9
Q ss_pred ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
.........++|++.+..| ++-...+.|..|++..... .............
T Consensus 112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g 163 (386)
T 3v65_B 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG 163 (386)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCC
T ss_pred ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccE
Confidence 3444568899999765554 4555678888888764211 0111111223456
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecc
Q 005913 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG 503 (670)
Q Consensus 427 l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-g~v~lwd~~~~~~~~~~~~ 503 (670)
+++.+.+..| ++-...+.|.+.++............-.....+++.|.+.+++.+. .. +.|..++++..........
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 8888755544 4555677899988875544444444445678999998666555544 44 6788888876544444444
Q ss_pred cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 504 ~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.......++|+|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 455678999998766665554 4678999998654443334333445678888 34555666667788988887777766
Q ss_pred EEeeC
Q 005913 583 TPLMG 587 (670)
Q Consensus 583 ~~~~~ 587 (670)
..+..
T Consensus 323 ~~i~~ 327 (386)
T 3v65_B 323 EIIRN 327 (386)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 66553
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.25 E-value=0.00026 Score=79.06 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=102.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc----cEeE-EEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~ 501 (670)
+..++.++.|+.|..+|..+++.+-.+..... .+.+ -... ++ .+++++. ++.|+.+|..+++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 56788888899999999999988876653221 1211 1111 34 5555554 799999999999988766
Q ss_pred cccCCC--------------------------------------eeEEEEcCCCCEEEEEEcC----------------C
Q 005913 502 AGHLSD--------------------------------------VDCVRWHINCNYIATGSSD----------------K 527 (670)
Q Consensus 502 ~~~~~~--------------------------------------v~~v~~~p~~~~l~tgs~d----------------g 527 (670)
...... ...+++.+....++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532110 0235667777777776642 3
Q ss_pred cEEEEECCCCcEEEEEecCC----------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 528 TVRLWDVSSGECVRIFIGHR----------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 528 ~I~iwd~~~~~~~~~~~~h~----------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.|..+|..+|+.+..+.... .++ -+...++|+ .++.++.+|.++++|..+|+.+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 59999999999988876321 122 122334774 67788999999999999999886654
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0033 Score=64.35 Aligned_cols=183 Identities=13% Similarity=0.008 Sum_probs=118.2
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCcEEEEECCC----CceeEEecccCCCee
Q 005913 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDR----IQPLRIMAGHLSDVD 509 (670)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~v~lwd~~~----~~~~~~~~~~~~~v~ 509 (670)
+|+.+.. ..|+..|+.+......... ...+..++|++.+..+ ++-...+.|..++++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4444444 4699999987765554443 3457789999865554 4445668999999876 233333433345678
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEeCCCCeeeEEe-
Q 005913 510 CVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED--GTIMMWDLASGRCVTPL- 585 (670)
Q Consensus 510 ~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d--g~I~iwDl~~~~~~~~~- 585 (670)
.+++.+.+. ..++-...+.|.++|+........+.........++++|.+..|+.+... +.|..+++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence 899987554 44555567899999987554444444344567899999976666655542 78999987533 33333
Q ss_pred eCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~ 620 (670)
...-.....+++++++..|+.+. ..+.|..+|+..
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 22234678999998766665554 567899999875
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.0011 Score=68.02 Aligned_cols=201 Identities=8% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 005913 422 GPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL 498 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~~ 498 (670)
..+.+++|.+.+..| .+-...+.|..+++..... .......-.....+++.+. +..+++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 456789999865555 4555678899999886532 2222222234567889874 445555556789999999865444
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD 575 (670)
..+.........++++|.+..|+.+.. .+.|...++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 444455567889999997666666553 57888888764333322323334568999999777666654 568899999
Q ss_pred CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+..........+.......+++. .+.++++-...+.|..++..++..
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 86433322223334456777775 445666666778899999876654
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0028 Score=67.20 Aligned_cols=225 Identities=8% Similarity=0.031 Sum_probs=141.3
Q ss_pred eecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+......+..++|++.+..|. +-...+.|..+++...... ...............
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD 162 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCcc
Confidence 344556789999998655555 4456678888887641100 001112222335678
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 005913 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 426 ~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~ 502 (670)
++++.+.+. +.++-...+.|.+.++........+...-.....|++.|.+.+++.+.. .+.|...+++.........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899988544 4455566789999999866555555544455789999996655555542 3788888887655544445
Q ss_pred ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
........+++++++..|+.+. ..+.|..+|+........... .-.....+++. .+.++++-...+.|..+|..+|
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 4556789999998777776664 457899999865443333332 22345577763 3445556666788999998888
Q ss_pred eeeEEeeCCCcceEEEE
Q 005913 580 RCVTPLMGHTSCVWTLA 596 (670)
Q Consensus 580 ~~~~~~~~h~~~V~sl~ 596 (670)
+.+..+........++.
T Consensus 322 ~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMV 338 (400)
T ss_dssp CCCEEEECSCSCEEEEE
T ss_pred CceEEEecCCCCCceEE
Confidence 77766654443444443
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.00055 Score=73.51 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=119.4
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC----cEEEEECCCCc
Q 005913 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg----~v~lwd~~~~~ 496 (670)
....++|+| ++..|..+...+.|+.+|+.++....... .......++|+++|.+++++.. ++ .+..++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 45666666655889999998665444333 4455789999999996666654 22 23334432211
Q ss_pred e-eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEec-CCCCeEEEEEcCCCCEEEEE-ECCCeEE
Q 005913 497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASG-DEDGTIM 572 (670)
Q Consensus 497 ~-~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~sg-~~dg~I~ 572 (670)
. ...+. .......++++| ++..+++-..++.|+.++..++........ .......++|+|+|++|+.+ ...+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 12222 234567888999 677666666788999999987665333322 22346789999999965554 4678899
Q ss_pred EEeCCC--Cee--eEEeeCC---------------CcceE-EEEEc--------CCCCEEEEEECCCcEEEEe
Q 005913 573 MWDLAS--GRC--VTPLMGH---------------TSCVW-TLAYS--------CEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 573 iwDl~~--~~~--~~~~~~h---------------~~~V~-sl~~s--------~~g~~l~sgs~Dg~I~iwd 617 (670)
.++... +.. +..+.+. -.... .++.. ++|.++++-...+.|+.++
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 987653 221 1122111 01123 45553 3466666666678888887
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.0015 Score=67.10 Aligned_cols=207 Identities=8% Similarity=0.015 Sum_probs=130.2
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 353 GLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 353 ~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
....++|++.+ .+..+-...+.|..+++..... ........-....++++.+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---------------------------CCEEEEECCSCCCEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---------------------------eEEEEcCCCCCccEEEEEc
Confidence 46788999854 4445555677888888764210 0011112223456788887
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCCCe
Q 005913 432 LGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV 508 (670)
Q Consensus 432 ~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~v 508 (670)
.+. +.++-...+.|.++++..................+++.|.+.+++.+. ..+.|...+++...............
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 555 445555678999999885544333434445578999999655555554 35788888887544333334444567
Q ss_pred eEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC
Q 005913 509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587 (670)
Q Consensus 509 ~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~ 587 (670)
+.++++|++..|+.+. ..+.|..+|+..........+.......+++.. +..+.+-...+.|..+|..+|+.+..+..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 8999999766666554 567899999864433333333344567777753 34555555678899999888876655543
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.0029 Score=62.37 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=126.6
Q ss_pred cCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCccCEEE
Q 005913 349 NTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSGPVYS 426 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~ 426 (670)
+..+.+..++|+|++..| ++...++.|...|... . ..+.+ .+-....-+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~----------------------------v~~~i~l~g~~D~EG 74 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D----------------------------LIRTIPLDFVKDLET 74 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C----------------------------EEEEEECSSCSSEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C----------------------------EEEEEecCCCCChHH
Confidence 444679999999986654 5577778887777652 1 11111 112255778
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee------CCCccEeEEEEecCCCEEEEEECCCcEEEEECC---C
Q 005913 427 ASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---R 494 (670)
Q Consensus 427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~---~ 494 (670)
|++.+++.++++.-.++.+.++++.....+ .... ..+.....++|+|.+..|+++.......+|.++ .
T Consensus 75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 889888877777667788999987755432 2221 134456899999998877777765555555553 1
Q ss_pred CceeEEec-------ccCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEEecCC---------CCeEEEEEcC
Q 005913 495 IQPLRIMA-------GHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSP 557 (670)
Q Consensus 495 ~~~~~~~~-------~~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l~~sp 557 (670)
...+..+. .+...+..++++|....++ .....+.+..+|.. |+.+..+.-.. ...-.|+|.+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 12233321 2345688999999765554 45566788889965 55665554222 2568899999
Q ss_pred CCCEEEEEECCCeEEEEeC
Q 005913 558 DGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 558 ~g~~l~sg~~dg~I~iwDl 576 (670)
+|+ |+..++.+.++.+.-
T Consensus 234 ~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 234 SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp TCC-EEEEETTTEEEEEEC
T ss_pred CCC-EEEEcCCceEEEEEe
Confidence 998 445577777777654
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.11 E-value=0.0011 Score=71.36 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=120.9
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC---Cc-EEEEECCCCc
Q 005913 423 PVYSASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---RT-ARIWSMDRIQ 496 (670)
Q Consensus 423 ~V~~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---g~-v~lwd~~~~~ 496 (670)
...+++|+|+ +..|..+...+.|+.++..++....... ......+++|+++|..+++.... .. +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 4455555544889999997666544433 44457899999999944443321 12 3333322211
Q ss_pred e-eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCCeE
Q 005913 497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-IG-HRSMILSLAMSPDGRYMASGD-EDGTI 571 (670)
Q Consensus 497 ~-~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~-h~~~I~~l~~sp~g~~l~sg~-~dg~I 571 (670)
. ...+. .......++++| +++.+++-..++.|+.+|..++.....+ .. ....-..++|+|+|++|+.+. ..+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 11222 334567788999 6776666667789999999877763332 22 122235799999999665554 56889
Q ss_pred EEEeCC--CCee--eEEeeCC---------------CcceEEEEE---------cCCCCEEEEEECCCcEEEEeC
Q 005913 572 MMWDLA--SGRC--VTPLMGH---------------TSCVWTLAY---------SCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 572 ~iwDl~--~~~~--~~~~~~h---------------~~~V~sl~~---------s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
+.+|+. ++.. ...+.+. -.....+++ .++|.++++-...+.|+.++.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 998865 3321 1112111 123567999 778888877777889999884
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.04 E-value=5.4e-05 Score=86.23 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=130.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCcee--EEeeC-CCccEeEEEEecCCCEEEEEEC-CCcEEE
Q 005913 426 SASFSP-LGDFILSSSADT-----------TIRLWSTKLNANL--VCYKG-HNYPVWDVQFNPQGHYFASSSH-DRTARI 489 (670)
Q Consensus 426 ~l~~sp-~~~~L~s~s~Dg-----------~I~lwd~~~~~~~--~~~~~-h~~~V~~l~~sp~g~~l~s~s~-dg~v~l 489 (670)
++++.+ +++.++.|+.+. .+.+||..+++.. ..... +.....++++..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 788888887543 5889999876532 22222 2333345778889999999984 458999
Q ss_pred EECCCCceeEEecccCCC-eeEEEEcCCCCEEEEEE-cC-----CcEEEEECCCCcEEEEE----ecCCCCeEEEEEcCC
Q 005913 490 WSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGS-SD-----KTVRLWDVSSGECVRIF----IGHRSMILSLAMSPD 558 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~tgs-~d-----g~I~iwd~~~~~~~~~~----~~h~~~I~~l~~sp~ 558 (670)
||..+.+-...-..+... -.+++..++++.++.|+ .+ ..+.+||..+++....- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998765433222212121 23455667999999988 34 57999999887644320 000000000122345
Q ss_pred CCEEEEEECCC---------eEEEEeCCCCeeeEEeeCCC---------cceEEEEEc-CCCCEEEEEECCC--------
Q 005913 559 GRYMASGDEDG---------TIMMWDLASGRCVTPLMGHT---------SCVWTLAYS-CEGSLLASGSADC-------- 611 (670)
Q Consensus 559 g~~l~sg~~dg---------~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s-~~g~~l~sgs~Dg-------- 611 (670)
+..++.|+.+| .+..||..+.........+. ..-.++.|. .++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 55555565443 56788887765433322111 122445554 3778888888543
Q ss_pred ---cEEEEeCCCCccccccccccCCccccccc--ccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 612 ---TVKLWDVTTSTKVLKTEEKSGTNRLRSLK--TLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 612 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.|.+||..+..- ..+. .++... .-.+....|+|++++.|+.+
T Consensus 430 ~~~~v~~yd~~~~~W-------------~~~~~~~mp~~R-~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 430 NAHIITLGEPGTSPN-------------TVFASNGLYFAR-TFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CEEEEECCSTTSCCE-------------EEECTTCCSSCC-BSCEEEECTTSCEEEECCBS
T ss_pred cceEEEcCCCCCCCe-------------eEEccCCCCCCc-ccCCeEECCCCCEEEECCcc
Confidence 566676655321 1111 222221 12344566899999999865
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.02 E-value=0.0036 Score=64.37 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=110.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC--CCCcee
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL 498 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~--~~~~~~ 498 (670)
+.++.+.+.+++..++++ .+|.|.. ..+.+.. ..........+..+.+.+++.+++++...+..+-+|- .+-+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 456778877766666555 4565432 2222332 2223345567889999999887776644333333332 122222
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-c---CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~---h~~~I~~l~~sp~g~~l~sg~~dg~I~iw 574 (670)
-......+..+.+.+++..++ ++.+|.+++.+...++.-..+. . +...+.++++.+++..++++. +|.| ++
T Consensus 200 --~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~ 274 (327)
T 2xbg_A 200 --NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC 274 (327)
T ss_dssp --ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred --CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence 233456788999999887654 4567888776433233322221 1 223588999998877666654 6766 44
Q ss_pred eCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913 575 DLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 575 Dl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
....|+.-..+. .+...++++.|.+++ .+++++.+|.|.-++-
T Consensus 275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 545454433333 234567889887554 4667778898776653
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0028 Score=68.56 Aligned_cols=239 Identities=9% Similarity=0.041 Sum_probs=142.4
Q ss_pred CEEEEEEcC-C-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec----CccCEEE
Q 005913 353 GLNCASISQ-D-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----HSGPVYS 426 (670)
Q Consensus 353 ~V~~l~fs~-d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~ 426 (670)
....|+|+| + ++++++-...+.|++.|+.... +..+.. .......
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------------------------v~~l~~~~~~~~~~p~~ 190 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------------------------LSSPLNINTIPTNRIRS 190 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------------------------EEEEECCTTSSCSBEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------------------------EEEEEccCccccCCCcE
Confidence 467889998 3 4444444444668888876421 111111 1235889
Q ss_pred EEE-------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccee-----EEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913 427 ASF-------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (670)
Q Consensus 427 l~~-------sp~~~~L~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg 485 (670)
++| +++++.|+++...+ .|.+++... +... ..+.... ....++++| ++.++++-..++
T Consensus 191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT
T ss_pred EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC
Confidence 999 99999776665543 266665333 1111 2222212 345788899 455556666778
Q ss_pred cEEEEECC-------CCce-----------eEE-ec-ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEEC--CCCcE--E
Q 005913 486 TARIWSMD-------RIQP-----------LRI-MA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--V 540 (670)
Q Consensus 486 ~v~lwd~~-------~~~~-----------~~~-~~-~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~--~~~~~--~ 540 (670)
.|..+|++ ++.. ... +. +.......++|+|+|++|+.+ +....|+.++. .++.. .
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 89999987 4442 111 22 223446789999999965554 45678888654 33322 1
Q ss_pred EEEecC---C------------CCeE-EEEEc-------CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC---------
Q 005913 541 RIFIGH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--------- 588 (670)
Q Consensus 541 ~~~~~h---~------------~~I~-~l~~s-------p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h--------- 588 (670)
..+.+. . .... .++.. ++|.++++=.....|+.++ .+|. +.++-+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence 233332 1 1233 44554 4566666666778999999 4563 3344221
Q ss_pred ---------------CcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcc
Q 005913 589 ---------------TSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 589 ---------------~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
-.....|+++++ |.++++=+.+..|+.+++.....
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 023678999996 77777777788999999877544
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.00 E-value=0.00054 Score=76.56 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=118.1
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCceeEEeeC--CC--------ccEeEEEE
Q 005913 426 SASFSPLGDFILSSSA--------------------D----TTIRLWSTKLNANLVCYKG--HN--------YPVWDVQF 471 (670)
Q Consensus 426 ~l~~sp~~~~L~s~s~--------------------D----g~I~lwd~~~~~~~~~~~~--h~--------~~V~~l~~ 471 (670)
.+++.|....++.++. | ++|..+|..+++.+-.++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677777777776653 2 6899999999999887764 21 1221 122
Q ss_pred e-cCCC---EEEEEECCCcEEEEECCCCceeEEecccCC------------C----------------------------
Q 005913 472 N-PQGH---YFASSSHDRTARIWSMDRIQPLRIMAGHLS------------D---------------------------- 507 (670)
Q Consensus 472 s-p~g~---~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~------------~---------------------------- 507 (670)
. .+|+ .++.++.+|.++++|.++++.+..+..... .
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 4663 788899999999999999988766543210 0
Q ss_pred -----eeEEEEcCCCCEEEEEE---------------------------------cCCcEEEEECCCCcEEEEEecCCCC
Q 005913 508 -----VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGECVRIFIGHRSM 549 (670)
Q Consensus 508 -----v~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~~~~~~~h~~~ 549 (670)
-..++++|+...+++.. .+|.|..||+.+|+.+....... +
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence 01346666655555433 25789999999999887765432 2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce-EEEEEcCCCCEEE
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYSCEGSLLA 605 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V-~sl~~s~~g~~l~ 605 (670)
+..-.....+..++.|+.||.++.||.++|+.+.+++...+.+ .-+.|..+|+.++
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2221222246788889999999999999999998887543322 1256666776433
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0018 Score=65.89 Aligned_cols=194 Identities=9% Similarity=0.085 Sum_probs=127.7
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEE---ecCCCEEEEEE-----------
Q 005913 425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS----------- 482 (670)
Q Consensus 425 ~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~---sp~g~~l~s~s----------- 482 (670)
-+++|.+....+..++ ..++|..|+...+........+ ...+..+.| .|++..+++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3678988666666665 6899999999755443332211 124679999 68887777544
Q ss_pred --CCCcEEEEECC---CCceeEEec--c-----------cCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEE
Q 005913 483 --HDRTARIWSMD---RIQPLRIMA--G-----------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIF 543 (670)
Q Consensus 483 --~dg~v~lwd~~---~~~~~~~~~--~-----------~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~ 543 (670)
.++.|..+|+. +++.+.... . -......++..++|+..++++.. +.|..++.... .+..+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence 26789999999 777776554 1 11247889999999999999988 88888886544 33322
Q ss_pred e-c-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--eEEee--CC---CcceEEE-EEcCCCCE-EEEEE
Q 005913 544 I-G-----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--VTPLM--GH---TSCVWTL-AYSCEGSL-LASGS 608 (670)
Q Consensus 544 ~-~-----h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--~~~~~--~h---~~~V~sl-~~s~~g~~-l~sgs 608 (670)
. . .....+.|+++|+|+.|++....|.|..+|+.+... +. .. +. -.....+ .--.+|+. |++.+
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~ 253 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGAR 253 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcC
Confidence 2 1 112367899999999999887799999999885332 21 11 21 1123333 33347777 55556
Q ss_pred CCCcEEEEeCCC
Q 005913 609 ADCTVKLWDVTT 620 (670)
Q Consensus 609 ~Dg~I~iwd~~~ 620 (670)
..+.+.+.+-+.
T Consensus 254 ~~~~~~l~S~Dg 265 (334)
T 2p9w_A 254 APYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEECSST
T ss_pred CCCEEEEECCCC
Confidence 666666665444
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.92 E-value=0.0022 Score=65.85 Aligned_cols=184 Identities=17% Similarity=0.258 Sum_probs=124.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC----CCE--EEEE-E-C--CCcEEEEECC-CCceeEE
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHY--FASS-S-H--DRTARIWSMD-RIQPLRI 500 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----g~~--l~s~-s-~--dg~v~lwd~~-~~~~~~~ 500 (670)
...+++.....+-+.+||+ .++.+..+.. +.+..+..-|. |.. ++.+ . . +++|++|+++ ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456777777888999999 6888877754 45666666652 222 3333 3 3 5799999774 2224555
Q ss_pred ecc------c-CCCeeEEEE--cCC-CC-EEEEEEcCCcEEEEECC-------CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 501 MAG------H-LSDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 501 ~~~------~-~~~v~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
+.. . ...+..+++ +|. +. ++++...+|.+..|++. +.+.++.|.. .+.+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 422 1 145666776 664 43 68888889999999883 3456777764 4578889999988999
Q ss_pred EEEECCCeEEEEeCC-----CCeeeEEee-CC-CcceEEEEE--cCCCC-EEEEEE-CCCcEEEEeCC
Q 005913 563 ASGDEDGTIMMWDLA-----SGRCVTPLM-GH-TSCVWTLAY--SCEGS-LLASGS-ADCTVKLWDVT 619 (670)
Q Consensus 563 ~sg~~dg~I~iwDl~-----~~~~~~~~~-~h-~~~V~sl~~--s~~g~-~l~sgs-~Dg~I~iwd~~ 619 (670)
+.+-++.-|..+|.. +++.+..+. ++ ...+..|++ .++++ +|++++ .++++.|||..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999999878888855 345555542 22 246788887 45555 565555 67899999996
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.91 E-value=0.01 Score=68.51 Aligned_cols=205 Identities=8% Similarity=-0.055 Sum_probs=131.7
Q ss_pred ecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEE
Q 005913 418 QGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWS 491 (670)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd 491 (670)
......+.+++|.+....|+ +-...+.|+.+++... .....+.........|++.+.+.. +++-...+.|.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 33456778999998655554 5556688999998753 223334433445678999886654 45555678999999
Q ss_pred CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 005913 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-ED 568 (670)
Q Consensus 492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~d 568 (670)
++.......+.........|+++|.+.+|+.... .+.|...++........+...-.....|++++.+..|+.+. ..
T Consensus 500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 9876555555555667899999998666666543 26799999865544444443345688999998777666664 45
Q ss_pred CeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 569 GTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
+.|..+|+........+... -....+|++. .+.++++-...+.|...+..++..
T Consensus 580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred CcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcc
Confidence 78999998654443333321 2334567664 334555555667888888666543
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.0069 Score=69.84 Aligned_cols=215 Identities=9% Similarity=0.038 Sum_probs=133.0
Q ss_pred eecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 347 FINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
+......+..++|++....| ++-...+.|+.+++...... ......+........
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD 474 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCC
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcc
Confidence 34445668889999855444 45555677888887641100 001112222334566
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-C-CcEEEEECCCCceeEEec
Q 005913 426 SASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 426 ~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-g~v~lwd~~~~~~~~~~~ 502 (670)
+|++.+.+..|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. . +.|...+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 788988775554 5556789999999865544444444456789999997555555542 2 678888988665555555
Q ss_pred ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
........|++.+.+..|+.+. ..+.|..+++............ -.....|++.. +.++++-...+.|...|..+|
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 5556789999998777666654 4568999998655444444332 22345666643 234444446688888888777
Q ss_pred eeeEEee
Q 005913 580 RCVTPLM 586 (670)
Q Consensus 580 ~~~~~~~ 586 (670)
+.+..+.
T Consensus 634 ~~~~~l~ 640 (791)
T 3m0c_C 634 SDVNLLA 640 (791)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 6555543
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.80 E-value=0.0087 Score=62.20 Aligned_cols=231 Identities=10% Similarity=0.130 Sum_probs=125.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
..-..-..++|.|||+++++ ..+|.|.+++ .. ...... ..............|+
T Consensus 28 ~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~~-----------------------~~~v~~~g~~~p~gia 81 (352)
T 2ism_A 28 GGLEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTYA-----------------------ELSVYHRGESGLLGLA 81 (352)
T ss_dssp CCCSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEEE-----------------------ECCCCCSTTCSEEEEE
T ss_pred CCCCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEee-----------------------cceEeecCCCCceeEE
Confidence 33446789999999996555 5679999988 32 100000 0001112235678999
Q ss_pred EcCC---CCEEEEEeC-C-----CeEEEEeCCCCc-----eeE-Eee---CCCccEeEEEEecCCCEEEEEEC-------
Q 005913 429 FSPL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH------- 483 (670)
Q Consensus 429 ~sp~---~~~L~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~l~~sp~g~~l~s~s~------- 483 (670)
|+|+ +..|..+.. . +.|..|+..... .+. .+. +.......++|.|+|..+++.+.
T Consensus 82 ~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~ 161 (352)
T 2ism_A 82 LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELA 161 (352)
T ss_dssp ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccc
Confidence 9998 555554433 2 568888876431 111 122 11123468999999976666432
Q ss_pred ------CCcEEEEECCCC-------------ceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcE------EEEECCCC
Q 005913 484 ------DRTARIWSMDRI-------------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSG 537 (670)
Q Consensus 484 ------dg~v~lwd~~~~-------------~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I------~iwd~~~~ 537 (670)
.|.|.-++.+.. .......++ .....++|+| ++..+++-.....+ .+.-+..+
T Consensus 162 ~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G 240 (352)
T 2ism_A 162 QDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPG 240 (352)
T ss_dssp GCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTT
T ss_pred cCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccC
Confidence 145666665531 111111233 3466789999 66655553332221 12222222
Q ss_pred c------------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee------eEEeeCCCcceE
Q 005913 538 E------------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVW 593 (670)
Q Consensus 538 ~------------------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~------~~~~~~h~~~V~ 593 (670)
. ++..+ .+......++| .+|..+++.-..+.|...++..... ...+..-...+.
T Consensus 241 ~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~ 318 (352)
T 2ism_A 241 GNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLR 318 (352)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEE
T ss_pred CcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCee
Confidence 1 22223 22234567777 4676666666667788887754321 122222235788
Q ss_pred EEEEcCCCCEEEEEE
Q 005913 594 TLAYSCEGSLLASGS 608 (670)
Q Consensus 594 sl~~s~~g~~l~sgs 608 (670)
.+++.|||.++++..
T Consensus 319 ~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 319 EVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEe
Confidence 999999998776654
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.76 E-value=0.0079 Score=62.52 Aligned_cols=229 Identities=12% Similarity=0.075 Sum_probs=123.0
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--Eee---CCCccEeEEEEecC---CCEEEEEEC-C-----CcE
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYK---GHNYPVWDVQFNPQ---GHYFASSSH-D-----RTA 487 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~---~h~~~V~~l~~sp~---g~~l~s~s~-d-----g~v 487 (670)
....+++|.|+|++++ +..+|.|++++ .+.... .+. ........++|+|+ +..|.++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567899999998555 45679999998 333211 111 12345789999998 445544433 2 578
Q ss_pred EEEECCCCc-----ee-EEec---ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC--------
Q 005913 488 RIWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG-------- 537 (670)
Q Consensus 488 ~lwd~~~~~-----~~-~~~~---~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~-------- 537 (670)
..|+..... .+ ..+. +.......++|.|+|.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 11 1122 11123468999999976666432 145666665420
Q ss_pred -----cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe--------EEEEeCCC----------------CeeeEEeeC
Q 005913 538 -----ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT--------IMMWDLAS----------------GRCVTPLMG 587 (670)
Q Consensus 538 -----~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~--------I~iwDl~~----------------~~~~~~~~~ 587 (670)
.....-.++. ....++|+| +|.++++-...+. |.+..-.. ..++..+.
T Consensus 188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111112332 356789999 6665555333222 33332111 01222332
Q ss_pred CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
+......++| .+|.++++.-..+.|...++......... .. ...+......+..+++.|+|.++++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~------~~---~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRV------LR---VETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEE------EE---EEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceee------cc---hheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 46766666666667777766543211000 00 001111235689999999998777654
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.72 E-value=0.025 Score=58.81 Aligned_cols=235 Identities=10% Similarity=0.063 Sum_probs=129.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (670)
Q Consensus 347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (670)
+...-.....++|.|||+++++ ..+|.|++++... ...... .............
T Consensus 24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~~~~~~-----------------------~~v~~~g~~g~~g 77 (354)
T 3a9g_A 24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--KKLVAS-----------------------FDVANVGEAGLLG 77 (354)
T ss_dssp EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--EEEEEE-----------------------CCCCCSTTCSEEE
T ss_pred EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--ceEeec-----------------------cceeecCCCceee
Confidence 3333456789999999985555 5679998886321 100000 0001112356789
Q ss_pred EEEcCC---CCEEEEEeC----C----CeEEEEeCCCCc-----e--e-EEeeC-CCccEeEEEEecCCCEEEEEEC---
Q 005913 427 ASFSPL---GDFILSSSA----D----TTIRLWSTKLNA-----N--L-VCYKG-HNYPVWDVQFNPQGHYFASSSH--- 483 (670)
Q Consensus 427 l~~sp~---~~~L~s~s~----D----g~I~lwd~~~~~-----~--~-~~~~~-h~~~V~~l~~sp~g~~l~s~s~--- 483 (670)
|+|+|+ +..|.++.. + +.|..|+..... . + ..+.. .......+.|.|+|..+++.+.
T Consensus 78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~ 157 (354)
T 3a9g_A 78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD 157 (354)
T ss_dssp EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence 999997 455544432 3 567777766431 1 1 11221 1123467999999987666432
Q ss_pred ----------CCcEEEEECCCC--------ceeEEecccCCCeeEEEEcC-CCCEEEEEEcCC---cEEEEECCC-----
Q 005913 484 ----------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSS----- 536 (670)
Q Consensus 484 ----------dg~v~lwd~~~~--------~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg---~I~iwd~~~----- 536 (670)
.|.|.-++.+.. .......++ .....++|+| +++.+++-.... .|.+.....
T Consensus 158 ~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp 236 (354)
T 3a9g_A 158 PRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWP 236 (354)
T ss_dssp GGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTT
T ss_pred CccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCC
Confidence 245655555432 111112233 3456899999 666555432221 233322100
Q ss_pred ---C--------cEEEEEecCCCCeEEEEEc-------CCCCEEEEEECCCeEEEEeCCCC-eee--EEee-CCCcceEE
Q 005913 537 ---G--------ECVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLASG-RCV--TPLM-GHTSCVWT 594 (670)
Q Consensus 537 ---~--------~~~~~~~~h~~~I~~l~~s-------p~g~~l~sg~~dg~I~iwDl~~~-~~~--~~~~-~h~~~V~s 594 (670)
+ .++..+.........++|. .+|.++++.-..+.|...++... ... ..+. +....+..
T Consensus 237 ~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 237 LATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRD 316 (354)
T ss_dssp TCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEE
T ss_pred cccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeE
Confidence 0 1222221122457788883 56777777777788999988753 222 2232 22457889
Q ss_pred EEEcCCCCEEEEEE
Q 005913 595 LAYSCEGSLLASGS 608 (670)
Q Consensus 595 l~~s~~g~~l~sgs 608 (670)
+++.|||.++++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999998766654
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.71 E-value=0.0077 Score=61.82 Aligned_cols=193 Identities=14% Similarity=0.239 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC----CC---
Q 005913 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD--- 434 (670)
Q Consensus 362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~--- 434 (670)
...+++.....+-+.+||+.. +.+..+.. +.++.+..-|. |+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence 445555555778899999953 12222221 44555555442 22
Q ss_pred EEEEEe-C--CCeEEEEeCCC-CceeEEeeC------CC-ccEeEEEE--ecC-CC-EEEEEECCCcEEEEECC------
Q 005913 435 FILSSS-A--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------ 493 (670)
Q Consensus 435 ~L~s~s-~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~l~~--sp~-g~-~l~s~s~dg~v~lwd~~------ 493 (670)
++++.. . +++|.+|++.. ...+..+.. .. ..+..+++ +|. +. |+++...+|.+..|++.
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence 223333 3 57899997742 223433321 11 45666777 663 43 67888889999999883
Q ss_pred -CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEEe-cCC-CCeEEEEE--cCCCC-EE
Q 005913 494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GHR-SMILSLAM--SPDGR-YM 562 (670)
Q Consensus 494 -~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~-~h~-~~I~~l~~--sp~g~-~l 562 (670)
+.+.++.+.. .+.+..|...+....|+.+-.+.-|..+|.. +++.+..+. ++- ..+..|++ .++|+ +|
T Consensus 168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 3355677664 3678889999999999999999778888865 344554442 222 36788888 45555 55
Q ss_pred EEEE-CCCeEEEEeCC-CCeeeEEee
Q 005913 563 ASGD-EDGTIMMWDLA-SGRCVTPLM 586 (670)
Q Consensus 563 ~sg~-~dg~I~iwDl~-~~~~~~~~~ 586 (670)
++++ .++...+||.. +.+.+..+.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 5555 67899999996 667777664
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.016 Score=62.61 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=118.7
Q ss_pred CEEEEEEcCC-CCEEEEEe-CCCeEEEEeCCCCceeEEeeCC---CccEeEEEE-------ecCCCEEEEEECCC-----
Q 005913 423 PVYSASFSPL-GDFILSSS-ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR----- 485 (670)
Q Consensus 423 ~V~~l~~sp~-~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~-------sp~g~~l~s~s~dg----- 485 (670)
....|+|+|. +..|..+. ..+.|++.|+..+......... ......++| +++|.+++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 55455444 4467889998876655544332 234789999 99999777666543
Q ss_pred --cEEEEECCC-Ccee-----EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECC-------CCcE----------
Q 005913 486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC---------- 539 (670)
Q Consensus 486 --~v~lwd~~~-~~~~-----~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~-------~~~~---------- 539 (670)
.+.+++... +... ..+.. ......++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 1211 22322 234567888995 5555566677889999987 5543
Q ss_pred -E-EEEe-cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeC--CCCeee--EEeeCC---C------------cceE-EE
Q 005913 540 -V-RIFI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL--ASGRCV--TPLMGH---T------------SCVW-TL 595 (670)
Q Consensus 540 -~-~~~~-~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl--~~~~~~--~~~~~h---~------------~~V~-sl 595 (670)
. ..+. +.....+.|+|+|+|++|+.+ .....|+.+|. .++... ..+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 1122 223456899999999965555 46678888664 333220 112111 0 1234 45
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEeC
Q 005913 596 AYS-------CEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 596 ~~s-------~~g~~l~sgs~Dg~I~iwd~ 618 (670)
+.. ++|.++++=...+.|+.++.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 554 56777777777889999983
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.057 Score=60.63 Aligned_cols=199 Identities=8% Similarity=-0.050 Sum_probs=132.6
Q ss_pred cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCcEEEEECCCCceeE
Q 005913 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLR 499 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~v~lwd~~~~~~~~ 499 (670)
..+.+++|++.+..|. +-..++.|+.+++........+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4678999999776665 44567899999988654444444333456788898765544 554566889999987655444
Q ss_pred EecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeC
Q 005913 500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (670)
Q Consensus 500 ~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl 576 (670)
.+.........++++|...+|+.... .+.|...++......... ..-.....|+++++++.|+.+. ..+.|..+|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 44455567899999996666666542 567888887654433333 3445678999999877666664 5678999998
Q ss_pred CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
..... ..+........++++.. +.++++-...+.|...|..++..
T Consensus 196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 75443 23333334456788764 45555555678888888766543
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.64 E-value=0.0042 Score=62.72 Aligned_cols=207 Identities=10% Similarity=0.081 Sum_probs=105.5
Q ss_pred CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCc---eeEEec--ccCCCeeEEE
Q 005913 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDCVR 512 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~---~~~~~~--~~~~~v~~v~ 512 (670)
..+.+||+.+.+-...-..............++..++.|+.+ ..+.+||..+.+ -...-. .......++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 368888887665332111111111111122356777777754 468899988765 322211 1111222222
Q ss_pred EcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCCeee
Q 005913 513 WHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCV 582 (670)
Q Consensus 513 ~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~~~~ 582 (670)
+ ++..++.|+.+ ..+.+||+.+.+-...-..........+..-++++++.|+.+ ..+.+||+.+.+-.
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 2 56677777654 368899988776443322111111111112267777777654 45889998876432
Q ss_pred E--EeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913 583 T--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 655 (670)
Q Consensus 583 ~--~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 655 (670)
. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.. +..+..++........+ .
T Consensus 189 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------------W~~~~~~p~~r~~~~~~--~ 251 (301)
T 2vpj_A 189 NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-------------WTTVTSMTTPRCYVGAT--V 251 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-------------EEEECCCSSCCBSCEEE--E
T ss_pred eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-------------EEECCCCCCcccceeEE--E
Confidence 2 22211111122222 67777887764 468888887643 12222222222222222 2
Q ss_pred cCCcEEEEeeCCC
Q 005913 656 RRNLLFAAGALSK 668 (670)
Q Consensus 656 ~~~~~La~gs~dg 668 (670)
-++.+++.|+.++
T Consensus 252 ~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 252 LRGRLYAIAGYDG 264 (301)
T ss_dssp ETTEEEEECCBCS
T ss_pred ECCEEEEEcCcCC
Confidence 3778888887765
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.64 E-value=0.027 Score=58.50 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=127.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---eCCCccEeEEEEecC---CCEEEEEEC----C----C
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---KGHNYPVWDVQFNPQ---GHYFASSSH----D----R 485 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---~~h~~~V~~l~~sp~---g~~l~s~s~----d----g 485 (670)
-....+++|.|+|+++ ++..+|.|++++. .+. .+..+ .........|+++|+ +..|.++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYL-VTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEE-EEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 3567899999999844 4556699999974 343 11111 112345789999997 445544433 3 5
Q ss_pred cEEEEECCCC--c---e--e-EEec-ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC------
Q 005913 486 TARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG------ 537 (670)
Q Consensus 486 ~v~lwd~~~~--~---~--~-~~~~-~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~------ 537 (670)
.|..|+.... . . + ..+. ........++|.|+|.++++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543 1 1 1 1122 11123467999999987666432 245666665422
Q ss_pred --cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC---eEEEEeCCC--------C--------eeeEEeeCCCcceEEE
Q 005913 538 --ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDG---TIMMWDLAS--------G--------RCVTPLMGHTSCVWTL 595 (670)
Q Consensus 538 --~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg---~I~iwDl~~--------~--------~~~~~~~~h~~~V~sl 595 (670)
.....-.++.. ...++|+| +|.++++-...+ .|.+..-.. + .++..+.........+
T Consensus 186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 11111234443 46899999 666555432221 243332110 0 1222331122456788
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 596 AYS-------CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 596 ~~s-------~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
+|. .+|.++++.-..+.|...++......... . ..+......+..+++.|+|.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~---------~--~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKI---------S--TFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEE---------E--EECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccce---------e--eeccCCCCCeeEEEECCCCcEEEEEe
Confidence 883 56777777666778888877643211000 0 01122245689999999998777654
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.64 E-value=0.029 Score=62.99 Aligned_cols=202 Identities=8% Similarity=-0.015 Sum_probs=126.8
Q ss_pred ccCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCce
Q 005913 421 SGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQP 497 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~ 497 (670)
-..+.+++|++.+..|..+. ..+.|..+++..... ...+...-.....+++.+.+.. +++-...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 35678999999777666554 467899999875532 2333333356789999985554 45555678999999986554
Q ss_pred eEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005913 498 LRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMW 574 (670)
Q Consensus 498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iw 574 (670)
...+.........++++|.+.+|+.+.. .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 4444455667889999998666666553 46777777654433333333445678999999766666554 56789999
Q ss_pred eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
|+..........+......++++..+ .++++-...+.|...|..++..
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 98754433322222223356777655 5555555678899999877654
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.00042 Score=79.23 Aligned_cols=201 Identities=7% Similarity=-0.062 Sum_probs=120.6
Q ss_pred cCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913 422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~ 495 (670)
..+.+++|.+.+..|+.+ ...+.|+.+++.. ......+.........+++.+. +..+++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 445678999877766655 4567899999875 2222222212223456788754 444555456788999998866
Q ss_pred ceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEE
Q 005913 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIM 572 (670)
Q Consensus 496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~ 572 (670)
.....+.........++++|.+.+|+.+.. .+.|..+++............-.....|+|+|++..|+.+ +..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544444444456788999997665555442 2678888775333222222223346689999976655544 4667899
Q ss_pred EEeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913 573 MWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (670)
Q Consensus 573 iwDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~ 623 (670)
.+|+........+. .......+|++..+ .++++....+.|..++..++..
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 99986433222222 11123345666543 5566666678999998766543
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.57 E-value=0.037 Score=57.42 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=129.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
-..-..++|.|||+.|.++...|.|++++...... .. ... .........+....++|+
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~-~~---~~~------------------~~~v~~~g~~g~~gia~~ 74 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLS-AP---LSG------------------VPDVWAHGQGGLLDVVLA 74 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEEC-CC---CBS------------------CCCCCCSTTCSEEEEEEC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee-eE---ecC------------------CcccccCCCCCceeEEEC
Confidence 34578999999999334455789999887432100 00 000 000111223567899999
Q ss_pred CC---CCEEEEE-eC-------CCeEEEEeCCCCc-----eeEEeeC------CCccEeEEEEecCCCEEEEEEC-----
Q 005913 431 PL---GDFILSS-SA-------DTTIRLWSTKLNA-----NLVCYKG------HNYPVWDVQFNPQGHYFASSSH----- 483 (670)
Q Consensus 431 p~---~~~L~s~-s~-------Dg~I~lwd~~~~~-----~~~~~~~------h~~~V~~l~~sp~g~~l~s~s~----- 483 (670)
|+ +..|..+ +. ...|..|++.... ....+.. .......+.|.|+|.++++.+.
T Consensus 75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~ 154 (353)
T 2g8s_A 75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP 154 (353)
T ss_dssp TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence 96 4544433 22 2356666664331 1111211 1122467999999965555433
Q ss_pred --------CCcEEEEECCCCc------------eeEEec-ccCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCC---
Q 005913 484 --------DRTARIWSMDRIQ------------PLRIMA-GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSG--- 537 (670)
Q Consensus 484 --------dg~v~lwd~~~~~------------~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~--- 537 (670)
.|.|.-++.+..- ....+. ++ .....++|+|....|.++... +.=.|.-+..+
T Consensus 155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny 233 (353)
T 2g8s_A 155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY 233 (353)
T ss_dssp GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC
T ss_pred ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC
Confidence 2456666765320 112222 33 456789999943344443322 11122222111
Q ss_pred ----------------------------cEEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCCeee
Q 005913 538 ----------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 538 ----------------------------~~~~~~~~h~~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.++..+. +......++|.. +|.++++....+.|...++..++.+
T Consensus 234 Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 234 GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT 312 (353)
T ss_dssp CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence 1112222 234567788864 5777777777888888888766544
Q ss_pred EE--e-eCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 005913 583 TP--L-MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV 618 (670)
Q Consensus 583 ~~--~-~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~ 618 (670)
.. + ......+..+++.|||.++++.. .+| +||.+
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 32 2 12235789999999998666543 334 44443
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.54 E-value=0.12 Score=54.18 Aligned_cols=233 Identities=12% Similarity=0.170 Sum_probs=151.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (670)
Q Consensus 357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L 436 (670)
.-.+|..+.+|.-. ...++|||+.... .+..+.- ...|.-=.|-.+ +.|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~~-~e~VvfWkWis~-~~l 119 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHTM-TDDVTFWKWISL-NTV 119 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEEC-SSCCCEEEEEET-TEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhcceec-CCCceEEEecCC-CeE
Confidence 34566667676654 6789999998622 2222222 234555566543 455
Q ss_pred EEEeCCCeEEEEeCCCC-ceeEEeeCC----CccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEeccc
Q 005913 437 LSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH 504 (670)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~ 504 (670)
+..+ +..|+-|++... .+.+.+..| +..|..-..+++.++++..| -.|.+.+|+.++. ..+.+.||
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 5554 457999999743 456666655 34576777788888877654 2478899999875 45667788
Q ss_pred CCCeeEEEEcCCC---CEEEEEEc---CCcEEEEECCCC---------cEEEEEecC---CCCeEEEEEcCCCCEEEEEE
Q 005913 505 LSDVDCVRWHINC---NYIATGSS---DKTVRLWDVSSG---------ECVRIFIGH---RSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 505 ~~~v~~v~~~p~~---~~l~tgs~---dg~I~iwd~~~~---------~~~~~~~~h---~~~I~~l~~sp~g~~l~sg~ 566 (670)
......+...-+. +.++.+.. .+.+++.++... +.+..+... .+-..++..|+.-..++.-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 6655444433211 23444443 278999998532 112222222 33456888999888999999
Q ss_pred CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
.-|.|++||+.++.++..-+-...+|..-+.+....=++.....|.|.--.++...
T Consensus 278 K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 99999999999999998877667777776666655556666688887777766543
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.54 E-value=0.021 Score=64.13 Aligned_cols=207 Identities=9% Similarity=0.020 Sum_probs=125.2
Q ss_pred CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 350 THNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 350 ~~~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
.-+....++|++.+..|... ...+.|..++++.... ........-....+++
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLA 90 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------eEEEEeCCCCCcCeEE
Confidence 34457899999876666554 4467788888764110 0111222225678999
Q ss_pred EcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecccC
Q 005913 429 FSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 429 ~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
+.+.+..| ++-...+.|.+.++............-....+|++.|.+.+++.+.. .+.|...+++............
T Consensus 91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~ 170 (619)
T 3s94_A 91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence 99866654 45556789999999865444444344455778999997555555543 4567777777554444444455
Q ss_pred CCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913 506 SDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~ 584 (670)
.....+++++++..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-...+.|...|..+++....
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 6788999998766665554 4578999988654333222212223346677655 4444444677899999877754433
No 308
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.54 E-value=0.11 Score=53.56 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=130.2
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (670)
Q Consensus 346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (670)
.+...-..-+.++|.|||+++++--..|.|++++.......... . .........+...
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~-~---------------------~~~v~~~g~~Gll 83 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG-E---------------------VPGVSPSGEGGLL 83 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E---------------------CTTCCCBTTBSEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec-c---------------------cCceeecCCCCce
Confidence 44455567899999999998777755899988875421110000 0 0001123456789
Q ss_pred EEEEcCC---CCEEEEE---eCCCeEEEEeCCCC--------ceeEE---ee-CCCccEeEEEEecCCCEEEEEEC----
Q 005913 426 SASFSPL---GDFILSS---SADTTIRLWSTKLN--------ANLVC---YK-GHNYPVWDVQFNPQGHYFASSSH---- 483 (670)
Q Consensus 426 ~l~~sp~---~~~L~s~---s~Dg~I~lwd~~~~--------~~~~~---~~-~h~~~V~~l~~sp~g~~l~s~s~---- 483 (670)
.|+|+|+ +..|..+ ..++.|.-|.+... ..... +. ........|.|.|+|.++++.+.
T Consensus 84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~ 163 (347)
T 3das_A 84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT 163 (347)
T ss_dssp EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence 9999995 3444432 23455666665541 11111 21 11223467999999987777542
Q ss_pred ---------CCcEEEEECCCCc-------eeEEe-cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc-------
Q 005913 484 ---------DRTARIWSMDRIQ-------PLRIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE------- 538 (670)
Q Consensus 484 ---------dg~v~lwd~~~~~-------~~~~~-~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~------- 538 (670)
.|.|.-.+.+..- ...++ .+| .....++|+|+|.+.++-. .|+.-.|--+..|.
T Consensus 164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence 3455555554320 01122 244 4466899999877665532 23222222222221
Q ss_pred -----------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCE
Q 005913 539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSL 603 (670)
Q Consensus 539 -----------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~ 603 (670)
++..+..+......++|. +|..+...-..+.|....+..... ...+.+..+.+..+...|||.+
T Consensus 243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~l 321 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKL 321 (347)
T ss_dssp CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEE
T ss_pred cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcE
Confidence 122332222355677776 455666555566777777655432 1223344467899999999877
Q ss_pred EEEEE
Q 005913 604 LASGS 608 (670)
Q Consensus 604 l~sgs 608 (670)
+++..
T Consensus 322 yv~td 326 (347)
T 3das_A 322 WLVTS 326 (347)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66654
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.009 Score=60.77 Aligned_cols=159 Identities=9% Similarity=0.056 Sum_probs=112.1
Q ss_pred CCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecccC-------CCeeEEEE---cCCCCEEEEEEc----
Q 005913 461 GHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHL-------SDVDCVRW---HINCNYIATGSS---- 525 (670)
Q Consensus 461 ~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~~-------~~v~~v~~---~p~~~~l~tgs~---- 525 (670)
....---++.|.+....|..++ ..++|..|+...+.......... ..+..+.| .|++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3344455789988666666666 78999999998654443322221 13578999 688777776442
Q ss_pred ---------CCcEEEEECC---CCcEEEEEec-------------CCCCeEEEEEcCCCCEEEEEECC-CeEEEEeCCCC
Q 005913 526 ---------DKTVRLWDVS---SGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDED-GTIMMWDLASG 579 (670)
Q Consensus 526 ---------dg~I~iwd~~---~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~sg~~d-g~I~iwDl~~~ 579 (670)
+..|..||+. +++.+....- -......++..++|+..++++.. +.|..+|....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 6789999999 7877765531 11247899999999999999888 88888886533
Q ss_pred eeeEEee-C-----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 580 RCVTPLM-G-----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 580 ~~~~~~~-~-----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.+..+. . .....+.++++|+|..|++....|.+..+|+..
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 333221 1 122367899999999888887799999999874
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.52 E-value=0.099 Score=52.75 Aligned_cols=232 Identities=11% Similarity=0.155 Sum_probs=150.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEE
Q 005913 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL 437 (670)
Q Consensus 358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~ 437 (670)
-.+|..+.+|.-. ...++|||+.... .+..+.- ...|.-=.|-.+ +.|+
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~----------------------------klks~~~-~e~VvfWkWis~-~~L~ 121 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHTM-TDDVTFWKWISL-NTVA 121 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTE----------------------------EEEEEEC-SSCEEEEEECSS-SEEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhh----------------------------hhcceec-CCccEEEEecCC-CeEE
Confidence 3467777777664 6789999998621 2222222 356777777744 4455
Q ss_pred EEeCCCeEEEEeCCCC-ceeEEeeCC----CccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecccC
Q 005913 438 SSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHL 505 (670)
Q Consensus 438 s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~~ 505 (670)
..+. ..|+-|++... .+.+.+..| ...|..-..+++.++++..| -.|.+.+|+.++. ..+.+.||.
T Consensus 122 lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 122 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred EEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 4443 57999999753 456666655 34566677788888877655 2378899999875 456677885
Q ss_pred CCeeEEEEcC--C-CCEEEEEEc---CCcEEEEECCCC---c------EEEEEecC---CCCeEEEEEcCCCCEEEEEEC
Q 005913 506 SDVDCVRWHI--N-CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 506 ~~v~~v~~~p--~-~~~l~tgs~---dg~I~iwd~~~~---~------~~~~~~~h---~~~I~~l~~sp~g~~l~sg~~ 567 (670)
.....+...- . .+.++.+.. .+.+++.++... . .+..+... .+-..++..|+.-..++.-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 5443333221 1 123333333 258999998432 1 22222222 334568888988889999999
Q ss_pred CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
-|.|++||+.++.++..-+-...+|..-+-+.+..=++.....|.|.--.++...
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 9999999999999998877667777766665554445556688887776666543
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.51 E-value=0.008 Score=60.80 Aligned_cols=212 Identities=9% Similarity=0.069 Sum_probs=109.3
Q ss_pred EEEEEeC--CCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEeccc--
Q 005913 435 FILSSSA--DTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGH-- 504 (670)
Q Consensus 435 ~L~s~s~--Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~~~~~~~~~~~~-- 504 (670)
+++.|+. ...+.+||..+.+-...- .........+ .-++..++.|+.+ ..+.+||..+.+-...-...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3445543 356888998876533221 1111111122 2366677777754 57888998876533322211
Q ss_pred CCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEecCCCCe-EEEEEcCCCCEEEEEEC---------C
Q 005913 505 LSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE---------D 568 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~g~~l~sg~~---------d 568 (670)
.....++.+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++ .-++++++.|+. -
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEESCTTTCEEC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE-EECCEEEEECCCCCCCCccccc
Confidence 111222222 66777777765 468999998876443311111111 1122 225666666653 3
Q ss_pred CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccc
Q 005913 569 GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641 (670)
Q Consensus 569 g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
..+.+||+.+..-. ..+......-..+.+ ++.+++.|+.+ ..+.+||..+.. +..+..
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~ 233 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------------WKMVSP 233 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-------------EEECCC
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-------------EEECCC
Confidence 45889999876432 222211111122222 66777777654 357888877642 222333
Q ss_pred cCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 642 LPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 642 ~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
++........+.+ ++.+++.|+.++
T Consensus 234 ~p~~r~~~~~~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 234 MPWKGVTVKCAAV--GSIVYVLAGFQG 258 (306)
T ss_dssp CSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred CCCCccceeEEEE--CCEEEEEeCcCC
Confidence 3333333333333 778888888664
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.50 E-value=0.00047 Score=78.81 Aligned_cols=222 Identities=9% Similarity=0.024 Sum_probs=126.1
Q ss_pred CCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913 351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (670)
...+..++|++++..|... ...+.|+.+++.+..... .....+.........|++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEEC
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEE
Confidence 3456788999876666554 456788888876410000 000000011122345677
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecccCC
Q 005913 430 SPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGHLS 506 (670)
Q Consensus 430 sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-g~v~lwd~~~~~~~~~~~~~~~ 506 (670)
.+.+. ++++-...+.|.++++........+.........+++.|.+.+|+.+. .. +.|..++++.......+.....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 75444 444445678899999885544444433334467889998655544443 22 6788877765433333333345
Q ss_pred CeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913 507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~ 583 (670)
....|+|+|++..|+.+ +..+.|..+|+........+.. .......|++..+ .++++....+.|..+|..+|+.+.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 67789999876555544 4567899999864333322221 1123345566543 455555667889999988888777
Q ss_pred EeeCCCcceEEEEE
Q 005913 584 PLMGHTSCVWTLAY 597 (670)
Q Consensus 584 ~~~~h~~~V~sl~~ 597 (670)
.+.......++|++
T Consensus 620 ~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 620 LLAENLLSPEDMVL 633 (699)
T ss_dssp CCCTTCSSCCCCCB
T ss_pred EeecCCCCCcEEEE
Confidence 66543333344443
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.49 E-value=0.0058 Score=61.64 Aligned_cols=182 Identities=10% Similarity=0.056 Sum_probs=97.4
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCc---eeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 005913 432 LGDFILSSSAD-----TTIRLWSTKLNA---NLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ 496 (670)
Q Consensus 432 ~~~~L~s~s~D-----g~I~lwd~~~~~---~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~ 496 (670)
++..++.|+.+ ..+.+||+.+.. -...-. ........+. .++..++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666666654 468999988766 332211 1111111222 267777777654 368888987765
Q ss_pred eeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCC--CeEEEEEcCCCCEEEEEEC
Q 005913 497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 497 ~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~sg~~ 567 (670)
-...- ........++.+ +++.++.|+.+ ..+.+||+.+.+-...-..... ...++.+ ++++++.|+.
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~ 215 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF 215 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence 33322 111112222222 66777777654 4689999987755433111111 1122222 5677777775
Q ss_pred C-----CeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913 568 D-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS 621 (670)
Q Consensus 568 d-----g~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~ 621 (670)
+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||..+.
T Consensus 216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 4 468999998765332 22211111222222 67778888765 35677887653
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.43 E-value=0.011 Score=59.69 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=102.5
Q ss_pred CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCceeEEecc--cCCCeeEEEE
Q 005913 443 TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAG--HLSDVDCVRW 513 (670)
Q Consensus 443 g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~~~~~~~~--~~~~v~~v~~ 513 (670)
..+..||+.+..-...-. ...... +++ .-++..++.|+.+ ..+.+||..+.+-...-.. ......++.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-GMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-eEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 357888887665332211 111111 122 2266777777754 3588888877643322111 111122222
Q ss_pred cCCCCEEEEEEcCC-----cEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC-------CeEEEEeCCCCe
Q 005913 514 HINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED-------GTIMMWDLASGR 580 (670)
Q Consensus 514 ~p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d-------g~I~iwDl~~~~ 580 (670)
.++..++.|+.++ .+.+||+.+.+-...-...... -.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 2667777777653 5788998877644331111111 112222 256666666542 458899988764
Q ss_pred ee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913 581 CV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653 (670)
Q Consensus 581 ~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 653 (670)
-. ..+.........+.+ ++.+++.|+.+ ..+.+||..+.. +..+..++.....-. .
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~~~~~r~~~~--~ 247 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-------------WRQVADMNMCRRNAG--V 247 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-------------EEEECCCSSCCBSCE--E
T ss_pred EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-------------EeeCCCCCCccccCe--E
Confidence 32 222221112222222 67788888765 368888877642 122222222221112 2
Q ss_pred EecCCcEEEEeeCCC
Q 005913 654 FSRRNLLFAAGALSK 668 (670)
Q Consensus 654 fs~~~~~La~gs~dg 668 (670)
..-++.+++.|+.++
T Consensus 248 ~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDG 262 (302)
T ss_dssp EEETTEEEEECCBCS
T ss_pred EEECCEEEEECCcCC
Confidence 223778888888765
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.025 Score=58.57 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=114.8
Q ss_pred CEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCC--ce-eEEeeC-----CCccEeEEEEec--CCC-EEE
Q 005913 423 PVYSASFSPLGDFILSSS------------ADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA 479 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s------------~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~l~~sp--~g~-~l~ 479 (670)
..-.+...|+|..+++++ .+|.|.++|..+. +. ...+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345566778776555542 6899999998743 21 112222 223566777766 453 455
Q ss_pred EEEC---CCcEEEEECCCCc-e---eEEecc-cCCCeeEEEEcCCCCEEEEEEc-----------------CCcEEEEEC
Q 005913 480 SSSH---DRTARIWSMDRIQ-P---LRIMAG-HLSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV 534 (670)
Q Consensus 480 s~s~---dg~v~lwd~~~~~-~---~~~~~~-~~~~v~~v~~~p~~~~l~tgs~-----------------dg~I~iwd~ 534 (670)
++.+ +.++.+|+++... . +..+.+ .....+.+++.++|.+.++... .|.|+.+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 5533 4577888775432 2 222332 2345789999999987777541 245555554
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC-Cee--eEEeeCCCcceEEEEEcC-CCCEEEEEEC
Q 005913 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSC-EGSLLASGSA 609 (670)
Q Consensus 535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~-~~~--~~~~~~h~~~V~sl~~s~-~g~~l~sgs~ 609 (670)
++.. .+...-.....++||||++.|+.+. ..+.|..||+.. +.. ...+ ...+..-.+++.+ +|++.+++..
T Consensus 211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 3332 3333334578999999998887765 568999999863 322 1223 2245677899999 5998887764
Q ss_pred C-CcEEEEe
Q 005913 610 D-CTVKLWD 617 (670)
Q Consensus 610 D-g~I~iwd 617 (670)
+ +.|..|+
T Consensus 287 ~g~~v~~~~ 295 (355)
T 3sre_A 287 NGMRIFFYD 295 (355)
T ss_dssp CHHHHHSCC
T ss_pred CceEEEEEC
Confidence 4 3444443
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.36 E-value=0.11 Score=58.30 Aligned_cols=203 Identities=7% Similarity=-0.043 Sum_probs=129.3
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
.....++|++.+..|. +-..++.|..++++.... ............++++.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----------------------------~~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----------------------------EHVVEFGLDYPEGMAVD 88 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----------------------------EEEEeCCCCCcceEEEE
Confidence 3578999998665555 555678888888764211 01111112345678888
Q ss_pred CCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCCC
Q 005913 431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 431 p~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
+.+..| ++-...+.|.+.++............-....++++.|...+|+... ..+.|...+++........ .....
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~ 167 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGR 167 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSS
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCC
Confidence 766655 4555678899999875544333433444568999999554555544 2567888888765544444 35567
Q ss_pred eeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
...+++++++..|+.+. ..+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+|+....+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 88999999877666654 457899999875444 34444444566788765 444555556789999998777544433
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.34 E-value=0.023 Score=57.39 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=97.8
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC------CcEEEEECCCCceeEEe
Q 005913 432 LGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLRIM 501 (670)
Q Consensus 432 ~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~~~ 501 (670)
++..++.|+.+ ..+.+||..+.+-...-.............-++..++.|+.+ ..+.+||..+.+-...-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 45666677654 578889988765433222111111111112267777777765 46889998876533321
Q ss_pred ccc--CCCeeEEEEcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC-
Q 005913 502 AGH--LSDVDCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED- 568 (670)
Q Consensus 502 ~~~--~~~v~~v~~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d- 568 (670)
... .....++. .++..++.|+. -..+.+||+.+.+-...-...... -.+++.. ++++++.|+.+
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~ 211 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNG 211 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEET
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCC
Confidence 111 11122222 25666666653 345889999887544332111111 1122222 56677776643
Q ss_pred ----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913 569 ----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS 621 (670)
Q Consensus 569 ----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~ 621 (670)
..+.+||+.+.+- +..+.........+.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 4689999987642 2222211122223333 67788888854 46788887764
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.33 E-value=0.014 Score=58.90 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE
Q 005913 432 LGDFILSSSAD-----TTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR 499 (670)
Q Consensus 432 ~~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~~~~~~~ 499 (670)
++..++.|+.+ ..+.+||..+.+-...-.. .......+. -++..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45666666644 3588899887654332211 111111122 2677777787553 57788887654333
Q ss_pred Eec--ccCCCeeEEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECC
Q 005913 500 IMA--GHLSDVDCVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 500 ~~~--~~~~~v~~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~d 568 (670)
.-. .......++. -++..++.|+.+ ..+.+||+.+.+-...-... .....++.+ ++++++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 214 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD 214 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence 211 1111122222 256666666543 35889999877544321111 111122222 56777777754
Q ss_pred -----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCC
Q 005913 569 -----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTS 621 (670)
Q Consensus 569 -----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~ 621 (670)
..+.+||+.+.+-. ..+.........+. .++.+++.|+.++ .|.+||..+.
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 46899999876432 22221111111222 2677888887653 4888888764
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.23 E-value=0.051 Score=56.20 Aligned_cols=151 Identities=12% Similarity=0.200 Sum_probs=93.5
Q ss_pred cCEEEEEEcC--CCC-EEEEEe-C--CCeEEEEeCCCCce----eEEeeCC-CccEeEEEEecCCCEEEEEEC-------
Q 005913 422 GPVYSASFSP--LGD-FILSSS-A--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH------- 483 (670)
Q Consensus 422 ~~V~~l~~sp--~~~-~L~s~s-~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~l~~sp~g~~l~s~s~------- 483 (670)
.....+.+.+ ++. +|+++. . +.+|.+|++..... +..+.+. -....++.+.++|.++++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 4556677655 354 444442 2 56788888765422 2233332 235789999999987777541
Q ss_pred ----------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEEecCCCC
Q 005913 484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSM 549 (670)
Q Consensus 484 ----------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~ 549 (670)
.|.|..++. ++ ++.+.......+.++|+|+++.++++. ..+.|+.|++.. +.. .+.+ ...+.
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~ 267 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL 267 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred ccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence 134444444 33 333444456778999999998887765 468899999863 332 2344 33466
Q ss_pred eEEEEEcC-CCCEEEEEECC-CeEEEEeC
Q 005913 550 ILSLAMSP-DGRYMASGDED-GTIMMWDL 576 (670)
Q Consensus 550 I~~l~~sp-~g~~l~sg~~d-g~I~iwDl 576 (670)
...+++.+ +|++.+++..+ +.|..||.
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 78899999 59888777644 34555554
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.20 E-value=0.52 Score=54.00 Aligned_cols=231 Identities=11% Similarity=0.106 Sum_probs=135.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (670)
Q Consensus 351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (670)
++.|+|+.-..+|. |-.|+.+| +..||-.... .. . .. . ......|.++.-.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~----------------~~--~------~~~~~~i~~i~~d 71 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-F----------------TY--G------ENNNTRIYCGVII 71 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-S----------------CT--T------STTSSCEEEEEEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-E----------------cc--C------CCCCceEEEEEEc
Confidence 56799999988875 55677777 4456622100 00 0 00 0 0123568888777
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-----ccC
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-----GHL 505 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-----~~~ 505 (670)
.++ .|..|+.+| +..||..+.............|+++.. .+| .+..++.+ .+..++..+.+.. .+. ...
T Consensus 72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~ 145 (758)
T 3ott_A 72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPN 145 (758)
T ss_dssp TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSC
T ss_pred CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCC
Confidence 665 566666665 789998765332211112234776654 355 56666665 6888998765433 231 123
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~ 580 (670)
..|.++....+++..+ |+.+ -|..+|..+++........ ...|.++...+++..|..|+. +-+..+|..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888777776554 5544 4778888776543221111 124888888887775555654 458889987765
Q ss_pred eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
...........|.++....+|.+.+. +.+ -+.+++..+.
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC
Confidence 43211112345888888888876554 444 5778886553
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.016 Score=58.72 Aligned_cols=214 Identities=12% Similarity=0.033 Sum_probs=108.2
Q ss_pred CCCEEEEEeC----CCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 005913 432 LGDFILSSSA----DTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ 496 (670)
Q Consensus 432 ~~~~L~s~s~----Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~----d-----g~v~lwd~~~~~ 496 (670)
++..++.|+. -..+.+||..+.+-...-. ...... +++ .-++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3455566653 2358888887665332211 111111 122 226667777765 2 468888887654
Q ss_pred eeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEEC
Q 005913 497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 497 ~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~ 567 (670)
-...- ........++.+ ++..++.|+.+ ..+.+||..+.+-...-... ...-.++.+ ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 32221 111112222332 66677776643 36889998876543321111 111122222 5677777765
Q ss_pred C-----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcc
Q 005913 568 D-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNR 635 (670)
Q Consensus 568 d-----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~ 635 (670)
+ ..+.+||+.+.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~------------- 242 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET------------- 242 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-------------
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-------------
Confidence 4 45899998776432 222211112222233 67778888765 458888887642
Q ss_pred cccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913 636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg 668 (670)
+..+..++........+. -++.+++.|+.++
T Consensus 243 W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 243 WTFVAPMKHRRSALGITV--HQGRIYVLGGYDG 273 (308)
T ss_dssp EEECCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred EEECCCCCCCccceEEEE--ECCEEEEEcCcCC
Confidence 222222332222222222 3678888888664
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.13 E-value=0.31 Score=50.13 Aligned_cols=240 Identities=14% Similarity=0.114 Sum_probs=130.2
Q ss_pred ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e----eCCCccEeEEEEecC----CCEEEEEE
Q 005913 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--Y----KGHNYPVWDVQFNPQ----GHYFASSS 482 (670)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~----~~h~~~V~~l~~sp~----g~~l~s~s 482 (670)
....+...-...+.|+|.|+|+++++--..|.|++++...+..... + .........|+++|+ +..+++-+
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 3344444456778999999999777665589999998765543221 1 123456789999995 44333322
Q ss_pred --CCCcEEEEECCCC--------ceeEE---ec-ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECC
Q 005913 483 --HDRTARIWSMDRI--------QPLRI---MA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVS 535 (670)
Q Consensus 483 --~dg~v~lwd~~~~--------~~~~~---~~-~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~ 535 (670)
.++.|.-|..... ..... +. ........++|.|+|.+.++.+. .|.|.-.+..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 3456666665541 11111 21 11123467999999987776442 3455555554
Q ss_pred CC--------cEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCe------------------eeEEeeCC
Q 005913 536 SG--------ECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR------------------CVTPLMGH 588 (670)
Q Consensus 536 ~~--------~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~------------------~~~~~~~h 588 (670)
.. .....-.+|.. ...++|+|+|.+.++= +.|+.=.|--+..|. ++..+..+
T Consensus 183 G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 22 11111235543 5689999988766553 223222222222211 12222222
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
......++|. +|.+++..-..+.|....+....... .....+......+..|++.|+|.++++-.
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~-----------~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA-----------DPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS-----------CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceec-----------ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 2355677776 45556655555566555554432110 00112223456799999999998776643
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.12 E-value=0.29 Score=52.49 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=60.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (670)
Q Consensus 349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (670)
..-...+.++|.|||+++++-...+.|++++........... .. .........+....|+
T Consensus 24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~-~~-------------------~~~~~~~g~~Gllgia 83 (454)
T 1cru_A 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQ-VP-------------------EIVNDADGQNGLLGFA 83 (454)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CT-------------------TCCCCTTSSCSEEEEE
T ss_pred CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEec-CC-------------------ccccccCCCCceeEEE
Confidence 334467899999999977776444568777643211100000 00 0000001246788999
Q ss_pred EcCC---CCEEEEEeC-------------CCeEEEEeCCCCc-----eeEEe---e-CCCccEeEEEEecCCCEEEEEE
Q 005913 429 FSPL---GDFILSSSA-------------DTTIRLWSTKLNA-----NLVCY---K-GHNYPVWDVQFNPQGHYFASSS 482 (670)
Q Consensus 429 ~sp~---~~~L~s~s~-------------Dg~I~lwd~~~~~-----~~~~~---~-~h~~~V~~l~~sp~g~~l~s~s 482 (670)
|+|+ +..|..+.. ...|.-|+..... ....+ . ........+.|.|+|.++++.+
T Consensus 84 ~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 84 FHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp ECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 9995 555544332 1345555543221 11112 1 1123468899999998777655
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.09 E-value=0.081 Score=54.79 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=121.4
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-------eeCCCccEeEEEEecC---CCEEEEE-EC------
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-------YKGHNYPVWDVQFNPQ---GHYFASS-SH------ 483 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~-------~~~h~~~V~~l~~sp~---g~~l~s~-s~------ 483 (670)
-.....|+|.|+|+.|+++...|.|++++.. +..... +.........++++|+ +.+|.++ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3456899999999944455678999999854 221111 1112335688999995 4444443 32
Q ss_pred -CCcEEEEECCCC--c--eeE-Eecc------cCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCCc
Q 005913 484 -DRTARIWSMDRI--Q--PLR-IMAG------HLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSGE 538 (670)
Q Consensus 484 -dg~v~lwd~~~~--~--~~~-~~~~------~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~~ 538 (670)
...|..|+++.. . ... .+.. .......++|.|+|.+.++.+. .|.|.-++....-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666432 1 111 1211 1112467999999965555433 2457677764320
Q ss_pred ------------EEEEE-ecCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEeCCCC------------------------
Q 005913 539 ------------CVRIF-IGHRSMILSLAMSP-DGRYMASGD-EDGTIMMWDLASG------------------------ 579 (670)
Q Consensus 539 ------------~~~~~-~~h~~~I~~l~~sp-~g~~l~sg~-~dg~I~iwDl~~~------------------------ 579 (670)
....+ .++. ....++|+| +|.++++-. .++.=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11112 2443 367899999 565544422 1111122211111
Q ss_pred -------eeeEEeeCCCcceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913 580 -------RCVTPLMGHTSCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (670)
Q Consensus 580 -------~~~~~~~~h~~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
.++..+. +...+..+.|.. +|.++++.-..+.|...++..+.... . .. .+...
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~-~--------~~---~~~~~ 321 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE-D--------GR---ILTDR 321 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-E--------EE---ESGGG
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee-e--------EE---cccCC
Confidence 1111222 223566777753 46677776677777777776432110 0 00 11122
Q ss_pred CCCeEEEEEecCCcEEEEe
Q 005913 646 STPVYSLQFSRRNLLFAAG 664 (670)
Q Consensus 646 ~~~V~~l~fs~~~~~La~g 664 (670)
...+..+++.|+|.++++.
T Consensus 322 ~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 322 GQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCCEEEEEECTTSCEEEEE
T ss_pred CCceeEEEECCCCcEEEEE
Confidence 3478999999999877653
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.05 E-value=0.068 Score=55.99 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=93.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeccc----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----------
Q 005913 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE----------- 538 (670)
Q Consensus 474 ~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~----------- 538 (670)
+|..++++- ++.||.-++......+.+... ...|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444432 356666666533344444432 33688899999999999985 5578888876321
Q ss_pred -EEEEEec------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCCe--eeEEee---------CCCcceEEEEE
Q 005913 539 -CVRIFIG------HRSMILSLAMSP---DGRYMASGDEDGTIMMWDLASGR--CVTPLM---------GHTSCVWTLAY 597 (670)
Q Consensus 539 -~~~~~~~------h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~~~--~~~~~~---------~h~~~V~sl~~ 597 (670)
..+.+.- ...+|..+.|+| .|..|++-..|+.|++||+.... +. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1233332 246799999999 46699999999999999998532 22 221 22356889999
Q ss_pred cCCCCEEEEEE--CCCcEEEE
Q 005913 598 SCEGSLLASGS--ADCTVKLW 616 (670)
Q Consensus 598 s~~g~~l~sgs--~Dg~I~iw 616 (670)
+.++-.|...+ ..|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 99887777755 77877644
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.05 E-value=0.33 Score=49.03 Aligned_cols=230 Identities=11% Similarity=0.163 Sum_probs=142.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccC-
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL- 505 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~- 505 (670)
-.+|..+.+|.-. ..++.++|+++...+..+.- ..+|.--.|-.+. .++..+ +..|+.|+++. ..|...+..|.
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~ 148 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 148 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGG
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchh
Confidence 3577777777665 67899999999988888775 3467666776444 444443 36899999974 56777777653
Q ss_pred ---CCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC--CC-CEEEEEEC---CC
Q 005913 506 ---SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP--DG-RYMASGDE---DG 569 (670)
Q Consensus 506 ---~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp--~g-~~l~sg~~---dg 569 (670)
..|.....+++.++++..+ -.|.+.+|....+. -+.+.+|.+....+.+.- .. ..++.+.. .+
T Consensus 149 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 227 (365)
T 2xzh_A 149 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 227 (365)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 3566777788999887644 23678899876554 345677755433332221 11 13333322 26
Q ss_pred eEEEEeCCCC---ee-----eEE-eeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccc
Q 005913 570 TIMMWDLASG---RC-----VTP-LMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637 (670)
Q Consensus 570 ~I~iwDl~~~---~~-----~~~-~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 637 (670)
.++|.++... .. ... +.. -..-.-++..|+.-.++..-+.-|.|++||+.++..+....-.... -
T Consensus 228 kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~---i 304 (365)
T 2xzh_A 228 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---I 304 (365)
T ss_dssp EEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---E
T ss_pred EEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCc---e
Confidence 8999998432 11 111 111 2344567888888889999999999999999999876443221111 0
Q ss_pred cccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.+.......+.|.++ ++.|++|.+.-.+
T Consensus 305 F~ta~~~~~~Gi~~V--nr~GqVl~v~v~~ 332 (365)
T 2xzh_A 305 FVTAPHEATAGIIGV--NRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEEGGGTEEEEE--ETTCEEEEEEECT
T ss_pred EEecccCCCCcEEEE--cCCCEEEEEEECc
Confidence 111222233444444 4777777665544
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.01 E-value=0.45 Score=49.94 Aligned_cols=230 Identities=11% Similarity=0.167 Sum_probs=144.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccC-
Q 005913 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL- 505 (670)
Q Consensus 428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~- 505 (670)
-.+|..+.++.-. ..++.++|+++...+..+.-. .+|.--.|-.+. .++..+ +..|+.|+++. ..|...|..|.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchh
Confidence 4667777666555 679999999999888887753 356666776554 444443 46899999974 46777777653
Q ss_pred ---CCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC---CCEEEEEEC---CC
Q 005913 506 ---SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---GRYMASGDE---DG 569 (670)
Q Consensus 506 ---~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~---g~~l~sg~~---dg 569 (670)
..|.....+++.++++..+ -.|.+.+|.+..+.. +.+.||.+....+.+.-+ ...++.+.. .+
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 3566777789999887644 246788999875544 456777655444433211 123333433 27
Q ss_pred eEEEEeCCCC---e-----eeEEe-e---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccc
Q 005913 570 TIMMWDLASG---R-----CVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637 (670)
Q Consensus 570 ~I~iwDl~~~---~-----~~~~~-~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 637 (670)
.++|.++... . ....+ . .-..-..++..|+.-.++..-+.-|.|++||+.++..+....-.... -
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~---i 303 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---I 303 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---E
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc---e
Confidence 8999998542 1 11111 1 12344567888988889999999999999999999876543221111 0
Q ss_pred cccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
.+.......+.|.++ ++.|++|.+.-.+
T Consensus 304 F~t~~~~~~~Gi~~V--nr~GqVl~v~v~e 331 (494)
T 1bpo_A 304 FVTAPHEATAGIIGV--NRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEEETTTTEEEEE--ETTCEEEEEEECT
T ss_pred EEecccCCCCcEEEE--ccCceEEEEEEcc
Confidence 112222333445444 5778777766544
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.00 E-value=0.05 Score=55.11 Aligned_cols=186 Identities=9% Similarity=0.038 Sum_probs=94.0
Q ss_pred cCCCCEEEEEeC----C-------CeEEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEECC--------CcEE
Q 005913 430 SPLGDFILSSSA----D-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHD--------RTAR 488 (670)
Q Consensus 430 sp~~~~L~s~s~----D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~d--------g~v~ 488 (670)
..++..++.|+. + ..+..||..+.+-... ..-..+- .+++.. ++..++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence 346777777763 1 1277888877653221 1111111 112222 56667777632 4588
Q ss_pred EEECCCCceeEEe--cccCCCeeEEEEcCCCCEEEEEEc-C-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913 489 IWSMDRIQPLRIM--AGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 489 lwd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~-d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
+||..+.+-...- ........++. .+++.++.|+. + ..+.+||+.+.+-...-..........+..-+++
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 198 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGR 198 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE
T ss_pred EECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCE
Confidence 8998775422211 11111122222 35667777765 2 4689999987654332111111111111122677
Q ss_pred EEEEEECCC-----eEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC--------------cEEEEeCC
Q 005913 561 YMASGDEDG-----TIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVT 619 (670)
Q Consensus 561 ~l~sg~~dg-----~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------------~I~iwd~~ 619 (670)
+++.|+.++ .+.+||+.+.+-. ..+.........+.+ ++.+++.|+.++ .|.+||+.
T Consensus 199 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 199 IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence 777777654 5889999876432 222211122222222 667888887642 36677776
Q ss_pred CC
Q 005913 620 TS 621 (670)
Q Consensus 620 ~~ 621 (670)
+.
T Consensus 277 ~~ 278 (315)
T 4asc_A 277 EK 278 (315)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.98 E-value=0.33 Score=52.03 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=61.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeeC------CCccEeEEEEecC---CCEEEEEEC------
Q 005913 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG------HNYPVWDVQFNPQ---GHYFASSSH------ 483 (670)
Q Consensus 421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~------h~~~V~~l~~sp~---g~~l~s~s~------ 483 (670)
-....+|+|.|+|+++++-...+.|++++..++.... .+.. .......|+|+|+ +.+|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4466799999999977765444578888865444322 2211 2345679999995 444444432
Q ss_pred -------CCcEEEEECCCC--c---eeEE---ec-ccCCCeeEEEEcCCCCEEEEEE
Q 005913 484 -------DRTARIWSMDRI--Q---PLRI---MA-GHLSDVDCVRWHINCNYIATGS 524 (670)
Q Consensus 484 -------dg~v~lwd~~~~--~---~~~~---~~-~~~~~v~~v~~~p~~~~l~tgs 524 (670)
...|.-|+.+.. . .... +. ........++|.|+|++.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321 1 1111 22 1123468899999998777654
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.97 E-value=0.029 Score=58.71 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=95.0
Q ss_pred cCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe---------
Q 005913 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--------- 580 (670)
Q Consensus 514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~--------- 580 (670)
+.+|.-++++ .++.||..++..+..-+.+... -..|..+..||+|.+||..+. ..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 3466666665 3578888888755545555433 236888999999999999865 578998887332
Q ss_pred ---eeEEeeC------CCcceEEEEEcC---CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 581 ---CVTPLMG------HTSCVWTLAYSC---EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 581 ---~~~~~~~------h~~~V~sl~~s~---~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
..+.+.- ...+|..+.|+| .+..|++-..|++|++||+........ ..+ .......+......
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~----k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN----KPNNSFGLDARVND 181 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES----CCCSEEESCSSCCC
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh----ccccccCCCcccce
Confidence 1112221 246799999999 456899999999999999987332111 000 00001122333467
Q ss_pred eEEEEEecCCcEEEEee
Q 005913 649 VYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs 665 (670)
|.+++|+.++..|.+.+
T Consensus 182 v~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp EEEEEECTTSSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEe
Confidence 89999999887776644
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.89 E-value=0.079 Score=53.61 Aligned_cols=180 Identities=9% Similarity=0.020 Sum_probs=91.3
Q ss_pred EEEEeCCCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCCCEEEEEEC----C-------CcEEEEECCCCceeEE--e
Q 005913 436 ILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSH----D-------RTARIWSMDRIQPLRI--M 501 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~----d-------g~v~lwd~~~~~~~~~--~ 501 (670)
++.|+ ..+..||..+.+-... ...............++..++.|+. + ..+..||..+.+-... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 34454 5689999988765431 1111111222223347777888873 1 1267788876543221 1
Q ss_pred cccCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C----
Q 005913 502 AGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-D---- 568 (670)
Q Consensus 502 ~~~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-d---- 568 (670)
........++.+ ++..++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+. +
T Consensus 86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 111111122222 56666666632 46899999877543221111111111122235667777765 2
Q ss_pred -CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCC
Q 005913 569 -GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTS 621 (670)
Q Consensus 569 -g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~ 621 (670)
..+.+||..+.+- +..+......-..+.+ ++.+++.|+.++ .+.+||..+.
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 4689999887642 2222211111122222 677888887654 4778887664
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.84 E-value=0.049 Score=55.00 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=94.1
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 005913 432 LGDFILSSSA----D-----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI 495 (670)
Q Consensus 432 ~~~~L~s~s~----D-----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~ 495 (670)
++.+++.|+. + ..+.+||+.+.+-...-. ........+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4556666654 2 458889987765332211 11111112222 66777777643 46888888765
Q ss_pred ceeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 005913 496 QPLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 496 ~~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~ 566 (670)
+-...- ........++.+ ++..++.|+.+ ..+.+||+.+.+-...-. .......++.+ ++++++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence 432221 111112222333 66677777654 468999988765432211 11111122222 567777776
Q ss_pred CC-----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913 567 ED-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS 621 (670)
Q Consensus 567 ~d-----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~ 621 (670)
.+ ..+.+||+.+.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 54 56999999876432 222211111122222 67778887754 35777887653
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.76 E-value=0.092 Score=49.95 Aligned_cols=177 Identities=12% Similarity=0.027 Sum_probs=101.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc------eeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee------E
Q 005913 433 GDFILSSSADTTIRLWSTKLNA------NLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------R 499 (670)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~------~ 499 (670)
...|++...| +|+.=...... ....+-. .=..+.+++|+|+|...++ .+|.++-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666667 66655444333 1122221 1236779999999987776 6677666665442211 1
Q ss_pred Ee-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913 500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (670)
Q Consensus 500 ~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I 571 (670)
.+ ..--....++.|.|+|.+.++ .||.|+-++-.+... ..+-..--..+..|.|.|+|.+.+.. ||.+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 11 111122588999999998888 569998888643211 11111122468999999999877666 7876
Q ss_pred EEEeCCCCee------eEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 572 MMWDLASGRC------VTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 572 ~iwDl~~~~~------~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
+-+...++.. ...+- .....-..+.|++++.+.++. +| ++|....
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 5544432211 11111 222334457799999877766 66 4555444
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.59 E-value=0.18 Score=50.99 Aligned_cols=205 Identities=10% Similarity=0.109 Sum_probs=100.6
Q ss_pred eEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEEC----CC-------cEEEEECCCCceeEE--ecccCCCee
Q 005913 444 TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH----DR-------TARIWSMDRIQPLRI--MAGHLSDVD 509 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~----dg-------~v~lwd~~~~~~~~~--~~~~~~~v~ 509 (670)
.+..||..+.+....-... ...........++..++.|+. ++ .+..||..+.+-... +........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 3788898877654321111 111112223446777788873 12 167788776543221 111111122
Q ss_pred EEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEEEecCCCCe-EEEEEcCCCCEEEEEEC------CCeEEEEe
Q 005913 510 CVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE------DGTIMMWD 575 (670)
Q Consensus 510 ~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~g~~l~sg~~------dg~I~iwD 575 (670)
++.+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++ ..++++++.|+. -..+.+||
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEc
Confidence 2222 56677777754 358889988765443211111101 1122 245666666653 24589999
Q ss_pred CCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913 576 LASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (670)
Q Consensus 576 l~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
+.+.+-. ..+.........+.+ ++.+++.|+.++ .+.+||+.+.. +..+..++.....
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~~p~~r~~ 246 (318)
T 2woz_A 182 PKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-------------WEVMTEFPQERSS 246 (318)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-------------EEECCCCSSCCBS
T ss_pred CCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-------------EEECCCCCCcccc
Confidence 9876432 222211111122222 677888877543 46678876642 2223333332222
Q ss_pred eEEEEEecCCcEEEEeeCCC
Q 005913 649 VYSLQFSRRNLLFAAGALSK 668 (670)
Q Consensus 649 V~~l~fs~~~~~La~gs~dg 668 (670)
... ..-++.+++.|+.++
T Consensus 247 ~~~--~~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 247 ISL--VSLAGSLYAIGGFAM 264 (318)
T ss_dssp CEE--EEETTEEEEECCBCC
T ss_pred eEE--EEECCEEEEECCeec
Confidence 222 234678888887653
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.59 E-value=0.26 Score=49.65 Aligned_cols=176 Identities=9% Similarity=0.057 Sum_probs=105.4
Q ss_pred EEEcCCCCEEEEEeCC--------------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----CCCcEE
Q 005913 427 ASFSPLGDFILSSSAD--------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR 488 (670)
Q Consensus 427 l~~sp~~~~L~s~s~D--------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----~dg~v~ 488 (670)
--+++++.+|.-+... ..|+..++........... . +..|++++.+|+-.. ....|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457788888766542 4677778876654333221 1 236788888887765 334566
Q ss_pred EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (670)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~ 567 (670)
..+++.....+ +..+.. .+|+|+++.|+-.+. ...|...++..+...+.+. +... ..++|++.+|+-...
T Consensus 133 ~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence 66776544443 333322 345778888886655 6788888987766555443 2222 346699998887654
Q ss_pred C--CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 005913 568 D--GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTS 621 (670)
Q Consensus 568 d--g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~--Dg~I~iwd~~~~ 621 (670)
. ..|..-++..+.. ..+.. ..+ ..|+|++.+|+-++. .+.|..-++...
T Consensus 204 ~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 204 NRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4 3677777765542 33322 223 347788888876543 345555555543
No 336
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.59 E-value=2 Score=51.52 Aligned_cols=174 Identities=10% Similarity=0.091 Sum_probs=106.2
Q ss_pred eEEEEeCCCCceeEEeeC-CCccEeEEEEec----CCCEEEEEE----------CCCcEEEEECCCCceeEEec-ccCCC
Q 005913 444 TIRLWSTKLNANLVCYKG-HNYPVWDVQFNP----QGHYFASSS----------HDRTARIWSMDRIQPLRIMA-GHLSD 507 (670)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp----~g~~l~s~s----------~dg~v~lwd~~~~~~~~~~~-~~~~~ 507 (670)
.|++.|..+++.+..+.- .+..+.+++... ...+|++|+ ..|.|+++++...+...... ...+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477788777776655542 234455555332 246888886 34789999987443222211 23567
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe--CCCCeeeEEe
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD--LASGRCVTPL 585 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD--l~~~~~~~~~ 585 (670)
|.+++-- +| +|++| ....|++|++...+.++.-..+-..|..+.....|.+++.|+.-..|.++. ...++....-
T Consensus 888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 7777632 45 55554 367899999987665542222222233333334578999998877777654 3344333222
Q ss_pred e-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 586 M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 586 ~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
+ .+...++++.+-.+ ..++.+..+|.|.+......
T Consensus 965 ~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence 2 24467888887544 46778999999999987763
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.55 E-value=2.2 Score=51.29 Aligned_cols=240 Identities=11% Similarity=0.120 Sum_probs=131.7
Q ss_pred ecCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913 348 INTHNGLNCASISQD------GSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (670)
Q Consensus 348 ~~~~~~V~~l~fs~d------~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (670)
......|+|+++.|. ++++|+|+. |++|+|+++......... .+.+
T Consensus 550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~--------------------------~L~~- 602 (1158)
T 3ei3_A 550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE--------------------------MLGG- 602 (1158)
T ss_dssp EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE--------------------------ECCS-
T ss_pred cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE--------------------------ECCC-
Confidence 344568999999863 479999997 999999999752211100 0100
Q ss_pred ccCEEEEEEc--CCCCEEEEEeCCCeEEEEeCC--CCceeE---EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 421 SGPVYSASFS--PLGDFILSSSADTTIRLWSTK--LNANLV---CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 421 ~~~V~~l~~s--p~~~~L~s~s~Dg~I~lwd~~--~~~~~~---~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
.....++.+. ....+|..|-.||.+.-+.++ ++.... .+-| ..++.-..+...|..-+.+..++...++.-+
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence 0122222221 233578899999987665543 443321 2233 4566655565555554444555665565544
Q ss_pred CCceeEEecccCCCee-EEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 005913 494 RIQPLRIMAGHLSDVD-CVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDE- 567 (670)
Q Consensus 494 ~~~~~~~~~~~~~~v~-~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~sg~~- 567 (670)
+ +.. ...-....+. ...|+.. .+-++.. .++.++|..+..-+ .++.+ .-...+..++++|..+.++.+..
T Consensus 682 ~-~l~-~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 682 H-KLV-FSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp S-SEE-EEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred C-ceE-EeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence 2 222 1121222333 3345422 2334443 35568888775322 23333 23356778888887665544321
Q ss_pred ------------------------------------------------CCeEEEEeCCCCeeeEEeeCC-CcceEEEE--
Q 005913 568 ------------------------------------------------DGTIMMWDLASGRCVTPLMGH-TSCVWTLA-- 596 (670)
Q Consensus 568 ------------------------------------------------dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~-- 596 (670)
-+.|++.|-.+++.+..+.-. ...+.+++
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v 837 (1158)
T 3ei3_A 758 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSC 837 (1158)
T ss_dssp EEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEE
T ss_pred ccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEE
Confidence 134777887777776655422 23344444
Q ss_pred -EcCC-CCEEEEEE----------CCCcEEEEeCC
Q 005913 597 -YSCE-GSLLASGS----------ADCTVKLWDVT 619 (670)
Q Consensus 597 -~s~~-g~~l~sgs----------~Dg~I~iwd~~ 619 (670)
|..+ ..+|+.|+ ..|.|.+|++.
T Consensus 838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 4332 46888887 34789999986
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.54 E-value=0.18 Score=50.98 Aligned_cols=185 Identities=9% Similarity=0.105 Sum_probs=92.1
Q ss_pred cCCCCEEEEEeC----CC-------eEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECC-------CcEEE
Q 005913 430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD-------RTARI 489 (670)
Q Consensus 430 sp~~~~L~s~s~----Dg-------~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~d-------g~v~l 489 (670)
..++..++.|+. ++ .+..||..+.+-...- ....... +++.. ++..++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence 446677777773 11 2777888765443221 1111111 12222 66777777754 25778
Q ss_pred EECCCCceeEEecccC--CCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCC
Q 005913 490 WSMDRIQPLRIMAGHL--SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGR 560 (670)
Q Consensus 490 wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~ 560 (670)
||..+.+-...-.... ....++. .++..++.|+. -..+.+||+.+.+-...-...... -.+++. -+++
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 208 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGK 208 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCE
Confidence 8887654332211111 1112222 36666677664 235899999887544321111111 112222 2567
Q ss_pred EEEEEECC-----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC--------------CcEEEEeCC
Q 005913 561 YMASGDED-----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD--------------CTVKLWDVT 619 (670)
Q Consensus 561 ~l~sg~~d-----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D--------------g~I~iwd~~ 619 (670)
+++.|+.+ ..+.+||+.+.+- +..+.........+. .++.+++.|+.+ ..+.+||+.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 77777643 3577899876542 222222221112222 256777777754 346777776
Q ss_pred CC
Q 005913 620 TS 621 (670)
Q Consensus 620 ~~ 621 (670)
+.
T Consensus 287 ~~ 288 (318)
T 2woz_A 287 KK 288 (318)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.37 E-value=0.065 Score=55.25 Aligned_cols=219 Identities=11% Similarity=0.094 Sum_probs=104.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC--CceeE--Eee-CCCccEeEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 005913 432 LGDFILSSSA-DTTIRLWSTKL--NANLV--CYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI 495 (670)
Q Consensus 432 ~~~~L~s~s~-Dg~I~lwd~~~--~~~~~--~~~-~h~~~V~~l~~sp~g~~l~s~s~-d---------g~v~lwd~~~~ 495 (670)
++.+++.|+. ...+.++|+.+ .+-.. .+. ...... +++. -++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4555566653 34688889864 22211 111 111111 1222 25667777765 2 46888898775
Q ss_pred ceeEEeccc-CCCeeEEEEcCCCCEEEEEEcC---------------------------------------CcEEEEECC
Q 005913 496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD---------------------------------------KTVRLWDVS 535 (670)
Q Consensus 496 ~~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~d---------------------------------------g~I~iwd~~ 535 (670)
+-...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 432221111 1111111122467777788754 578999998
Q ss_pred CCcEEEEEecCC-CCe-EEEEEcCCCCEEEEEEC------CCeEEEEeC--CCCe--eeEEeeCCCcceEEEEEcCCCCE
Q 005913 536 SGECVRIFIGHR-SMI-LSLAMSPDGRYMASGDE------DGTIMMWDL--ASGR--CVTPLMGHTSCVWTLAYSCEGSL 603 (670)
Q Consensus 536 ~~~~~~~~~~h~-~~I-~~l~~sp~g~~l~sg~~------dg~I~iwDl--~~~~--~~~~~~~h~~~V~sl~~s~~g~~ 603 (670)
+.+-...-.... ... .+++.. ++++++.|+. ...+.+||+ .+.. .+..+..........+...++.+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 775443322111 111 223322 5666666653 345777887 3332 22222111111111122236677
Q ss_pred EEEEECC----------------------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913 604 LASGSAD----------------------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 661 (670)
Q Consensus 604 l~sgs~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L 661 (670)
++.|+.+ ..+.+||+.+.. +..+..++.....- .++.-++.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------------W~~~~~~p~~r~~~--~~~~~~~~i~ 320 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------------WDKSGELSQGRAYG--VSLPWNNSLL 320 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------------CEEEEECSSCCBSS--EEEEETTEEE
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------------eeeCCCCCCCcccc--eeEEeCCEEE
Confidence 7777632 246778876532 23333343333222 2234578888
Q ss_pred EEeeCCC
Q 005913 662 AAGALSK 668 (670)
Q Consensus 662 a~gs~dg 668 (670)
+.|+.++
T Consensus 321 v~GG~~~ 327 (357)
T 2uvk_A 321 IIGGETA 327 (357)
T ss_dssp EEEEECG
T ss_pred EEeeeCC
Confidence 8888764
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.31 E-value=0.14 Score=61.30 Aligned_cols=229 Identities=11% Similarity=0.172 Sum_probs=133.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEE
Q 005913 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS 438 (670)
Q Consensus 359 fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s 438 (670)
.+|..+.+|.-. ..+++|||+.+..... .+. ...+|.-=.|-... .|+.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klk----------------------------s~~-~~e~VvfWkWis~~-~l~l 121 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMK----------------------------AHT-MTDDVTFWKWISLN-TVAL 121 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhc----------------------------ccc-cCCCceEEEecCCC-eeEE
Confidence 455566666553 6789999987522111 111 12356556676443 3444
Q ss_pred EeCCCeEEEEeCCCC-ceeEEeeCC----CccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecccCC
Q 005913 439 SSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS 506 (670)
Q Consensus 439 ~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~~~ 506 (670)
.+ +..|+-|++... .+...+..| +..|..-..+++.++++..| -.|.+.+|+.+++ ..+.+.||.+
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 43 357999999743 344444444 45676777788888877654 3488999998764 3345566765
Q ss_pred CeeEEEEc--CC-CCEEEEEEc---CCcEEEEECCCC---c------EEEEEecC---CCCeEEEEEcCCCCEEEEEECC
Q 005913 507 DVDCVRWH--IN-CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGDED 568 (670)
Q Consensus 507 ~v~~v~~~--p~-~~~l~tgs~---dg~I~iwd~~~~---~------~~~~~~~h---~~~I~~l~~sp~g~~l~sg~~d 568 (670)
....+... +. .+.++.+.. .+.++|.++... . .+..+... ..-..++..|+.-..++..+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 54444332 11 223332222 368999888542 1 11122111 2234577888888888899999
Q ss_pred CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
|.|.++|+.+|.++..-+-...+|...+-+....=++.....|.|.--.+..
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred ceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 9999999999998866554445555444443322333344566555444443
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.29 E-value=2.2 Score=48.68 Aligned_cols=224 Identities=10% Similarity=0.114 Sum_probs=131.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (670)
Q Consensus 352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (670)
..|.|+....+| .|.+|+.+| +..||..+..-.. ........|.++...
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~~- 111 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMALQ- 111 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEEE-
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEec-
Confidence 458888877766 566677665 6788865411000 000012346666543
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEee-----CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---
Q 005913 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--- 503 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~--- 503 (670)
++ .|..++.+ -+..++..+.... .+. .....|.++....+|...+ |+.+ -+..++..+.+.......
T Consensus 112 ~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~ 186 (758)
T 3ott_A 112 GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHS 186 (758)
T ss_dssp TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCT
T ss_pred CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCcc
Confidence 44 56666666 5888898765432 331 1234588888877776554 5544 577888776543221111
Q ss_pred --cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (670)
Q Consensus 504 --~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~ 581 (670)
....|.++...++++.|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.++|..++..
T Consensus 187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence 1124788888777776666664 4588899877654332211234588888888887655 4444 588898876543
Q ss_pred eEEeeC--------CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913 582 VTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 582 ~~~~~~--------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
. .+.. ....|.++....+|.+.+ |+..| +.++.
T Consensus 264 ~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~ 304 (758)
T 3ott_A 264 Q-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR 304 (758)
T ss_dssp E-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred E-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence 2 2211 124689998888887544 55556 55543
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.10 E-value=0.74 Score=46.31 Aligned_cols=172 Identities=9% Similarity=0.064 Sum_probs=101.9
Q ss_pred CCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--------------CcEEEEECCC
Q 005913 431 PLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------RTARIWSMDR 494 (670)
Q Consensus 431 p~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--------------g~v~lwd~~~ 494 (670)
.++.+|.... .++.|+..+..... ...+... .+--++++|.+|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4567666553 35666666665433 3333321 134567888888777542 4678888877
Q ss_pred CceeEEecccCCCeeEEEEcCCCCEEEEEE----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC
Q 005913 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG 569 (670)
Q Consensus 495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-dg 569 (670)
.+....... .+..|++++++|+-.. .+..|+..++.... ...+..+.. .+++|+|+.|+-.+. ..
T Consensus 98 ~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 654433221 2336788999988776 34466677776444 334444433 456888888886654 67
Q ss_pred eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCC
Q 005913 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTS 621 (670)
Q Consensus 570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~ 621 (670)
.|.+.++..+.....+. +... ..++|++.+|+-...++ .|..-++...
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 88998987665443332 2222 23568888887766443 4555555443
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.91 E-value=0.18 Score=51.78 Aligned_cols=189 Identities=11% Similarity=0.024 Sum_probs=91.5
Q ss_pred CCCEEEEEeC-C---------CeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECC----------------
Q 005913 432 LGDFILSSSA-D---------TTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHD---------------- 484 (670)
Q Consensus 432 ~~~~L~s~s~-D---------g~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d---------------- 484 (670)
++.+++.|+. + ..+.+||+.+.+-...-... .......+...++..++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 144 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK 144 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence 4556666654 1 46888998876543321111 1111111222577788888754
Q ss_pred -----------------------CcEEEEECCCCceeEEecccC-CCe-eEEEEcCCCCEEEEEEc------CCcEEEEE
Q 005913 485 -----------------------RTARIWSMDRIQPLRIMAGHL-SDV-DCVRWHINCNYIATGSS------DKTVRLWD 533 (670)
Q Consensus 485 -----------------------g~v~lwd~~~~~~~~~~~~~~-~~v-~~v~~~p~~~~l~tgs~------dg~I~iwd 533 (670)
..+.+||..+.+-...-.... ..- .+++. -++..++.|+. ...+.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEE
T ss_pred cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEE
Confidence 478899987764333221111 111 22332 25566666653 34577788
Q ss_pred C--CCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECC----------------------CeEEEEeCCCC--eeeEEe
Q 005913 534 V--SSGECVRI--FIGHRSMILSLAMSPDGRYMASGDED----------------------GTIMMWDLASG--RCVTPL 585 (670)
Q Consensus 534 ~--~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~d----------------------g~I~iwDl~~~--~~~~~~ 585 (670)
+ .+.+-... +........+.+...++++++.|+.+ ..+.+||+.+. ..+..+
T Consensus 224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 303 (357)
T 2uvk_A 224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303 (357)
T ss_dssp CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence 7 44332221 11111111111223356677777632 25788998754 344444
Q ss_pred eCCCcceEEEEEcCCCCEEEEEECCC------cEEEEeCCCCcc
Q 005913 586 MGHTSCVWTLAYSCEGSLLASGSADC------TVKLWDVTTSTK 623 (670)
Q Consensus 586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg------~I~iwd~~~~~~ 623 (670)
......-.++ ..++.+++.||.++ .|.+++++..+.
T Consensus 304 p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 304 SQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp SSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred CCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 3322222222 23678888888653 355557776543
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.89 E-value=0.29 Score=58.72 Aligned_cols=229 Identities=11% Similarity=0.157 Sum_probs=135.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEeccc---
Q 005913 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH--- 504 (670)
Q Consensus 429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~--- 504 (670)
.+|..+.++.-. ..++.|+|+.+...+..+.- ..+|.--.|-... .++..+ +..|+.|++.. ..|+..|..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 556666665544 67899999998887776664 3456666665443 343333 36799999973 4566666655
Q ss_pred -CCCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEc--CCCC-EEEEEE---CCCe
Q 005913 505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMS--PDGR-YMASGD---EDGT 570 (670)
Q Consensus 505 -~~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s--p~g~-~l~sg~---~dg~ 570 (670)
...|..-..+++.++++..+ -.|.+.+|.+..+.. +.+.||.+....+... +... .++.+. ..+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 35677777788999887644 347888998765433 3455665544333332 1112 222222 1278
Q ss_pred EEEEeCCCC---eeeE------EeeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 571 IMMWDLASG---RCVT------PLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 571 I~iwDl~~~---~~~~------~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
++|.++... .+.. .+.. -.....++..|+.-.++...+.-|.|.++|+.++..+....-...+ -.
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~---iF 304 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---IF 304 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCc---eE
Confidence 999998542 1111 1111 1233456777888788999999999999999998876443211111 01
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALS 667 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~d 667 (670)
+.......+.|.+ .++.|++|.++-..
T Consensus 305 ~~~~~~~~~g~~~--vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 305 VTAPHEATAGIIG--VNRKGQVLSVCVEE 331 (1630)
T ss_pred EeccCCCCCceEE--EcCCceEEEEEEcc
Confidence 1122223334443 35777777665543
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.88 E-value=0.14 Score=48.81 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=85.0
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
..+..++|+|+|.+.++ .+|.++-.+..+.... ..+- +-+. ...+.|.|+|.+.++ .||.|+-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999886666 6777766665442211 1111 1111 468899999988777 56988888752
Q ss_pred CCce-------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE------EEEEe-cCCCCeEEEEEcCCC
Q 005913 494 RIQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIFI-GHRSMILSLAMSPDG 559 (670)
Q Consensus 494 ~~~~-------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~~~~~-~h~~~I~~l~~sp~g 559 (670)
+... ..+-.+--..+.+|.|.|+|.+.++. |+.++-+..-++.. ...+- ......+-+.|.|+|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2111 11122233578999999999988777 77765443332211 11111 222344557788888
Q ss_pred CEEEEEECCCeEE
Q 005913 560 RYMASGDEDGTIM 572 (670)
Q Consensus 560 ~~l~sg~~dg~I~ 572 (670)
.+.++. +|.++
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 776666 66443
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.026 Score=57.92 Aligned_cols=189 Identities=9% Similarity=0.012 Sum_probs=106.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEe--c-CCCEEEEE-ECCCcEEEEECCCCceeEEecc----c
Q 005913 434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--P-QGHYFASS-SHDRTARIWSMDRIQPLRIMAG----H 504 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~s--p-~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~----~ 504 (670)
..++.++.||.|+-+|..+++.+-.++.. ..++....-. + ++..++.. +.||.|..++..++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999988887654 1222221100 1 22333333 5899999999888754433321 1
Q ss_pred CCCeeE---EEE-c----CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC--CC-----eEEEEEc-----CCCCEEEE
Q 005913 505 LSDVDC---VRW-H----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS 564 (670)
Q Consensus 505 ~~~v~~---v~~-~----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----I~~l~~s-----p~g~~l~s 564 (670)
.+++.. ... . ..+..+++|+.+|.+...|+++|+.+..+.... +. ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 112211 000 0 145688999999999999999999999886431 10 1122211 12456777
Q ss_pred EECCCeEEEEeCCCCeeeEEe-----eCCCc--ceE-EEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913 565 GDEDGTIMMWDLASGRCVTPL-----MGHTS--CVW-TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~~~~~~-----~~h~~--~V~-sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~ 625 (670)
+..+..+.+.+ ++|+ +-.+ ..+.. .+. +-..+.++.+ +.++.||.|..+|..++....
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777766 4453 2111 11100 000 0001123555 446778888888877776554
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.23 Score=50.83 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=78.3
Q ss_pred eCCCeEEEEeCCCCceeEEeeC----CCccEeE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-
Q 005913 440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS- 506 (670)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---l~~-----sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~- 506 (670)
+.||.|..++..++.....+.. ...|+.. ... ...+..+++|+.+|.+...|..+|+.+..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~ 143 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN 143 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence 5789999999887744433321 1222221 000 01455788999999999999999999988863321
Q ss_pred ------CeeEEEEc-----CCCCEEEEEEcCCcEEEEECCCCcEEEEE-----ecCCCC--e-EEEEEcCCCCEEEEEEC
Q 005913 507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRIF-----IGHRSM--I-LSLAMSPDGRYMASGDE 567 (670)
Q Consensus 507 ------~v~~v~~~-----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----~~h~~~--I-~~l~~sp~g~~l~sg~~ 567 (670)
...|.... -.+..++.|..+..+.+.+ ++|+ +..+ ..+... + .+-..+.++.+ +.++.
T Consensus 144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~ 220 (339)
T 2be1_A 144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR 220 (339)
T ss_dssp C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence 11122211 1245777787777777777 4453 2111 111000 0 00001224555 44788
Q ss_pred CCeEEEEeCCCCeeeE
Q 005913 568 DGTIMMWDLASGRCVT 583 (670)
Q Consensus 568 dg~I~iwDl~~~~~~~ 583 (670)
||.|.-+|..+|..+-
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 8999999988887664
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.18 E-value=0.55 Score=46.74 Aligned_cols=184 Identities=15% Similarity=0.053 Sum_probs=97.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.|..++...... ++. . ||.|+.|-......+-.-..-...|..++.... +.+.-. ||.|+.|-....-.+-...
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 466666653332 333 4 899999976643322111111235777766543 333334 8999999765422221112
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.....|..++...+. .+.-. ||.|+.|-......+..-..-...|..++...+. .++. .||.|+.|=......+
T Consensus 138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT
T ss_pred cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC
Confidence 233557777654333 22233 7999999765322211111123457777766443 2333 5899999976543222
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
..-......|..++-..... ++.. ||.|..|=....
T Consensus 212 g~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRT 247 (282)
T ss_dssp CCCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred CCCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence 11111123567777654433 3333 999999976654
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.11 E-value=0.19 Score=54.22 Aligned_cols=188 Identities=11% Similarity=0.118 Sum_probs=114.5
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCceeEEeeC-CCccEeEEEEe--cCCCEEEEEEC-------CCcE---------EE--
Q 005913 432 LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSH-------DRTA---------RI-- 489 (670)
Q Consensus 432 ~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~g~~l~s~s~-------dg~v---------~l-- 489 (670)
||++|+.-. .+..|-..+++..++-..+.- ....+.++.|- |+..|++.++. ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 567777765 467788889998887666553 34567788886 67778888763 3331 11
Q ss_pred -EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC---------------cEEEE---------------------
Q 005913 490 -WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------TVRLW--------------------- 532 (670)
Q Consensus 490 -wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---------------~I~iw--------------------- 532 (670)
.|.++.+....+.- .+....+...+++.+.++.+.+. .+.++
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 12223222222211 22344455677888877766321 23344
Q ss_pred ----ECCC----CcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC------ee-------eEEeeCCCc
Q 005913 533 ----DVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG------RC-------VTPLMGHTS 590 (670)
Q Consensus 533 ----d~~~----~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~------~~-------~~~~~~h~~ 590 (670)
|.+. +..+..+..-......+.++|||++++.++ .+.++.++|+.+- +. +.+.. -.-
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence 4333 212222222223445788999999988765 6789999998742 11 22222 233
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913 591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (670)
Q Consensus 591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~ 621 (670)
.....+|.++|+-..|.--|..|.-|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 4578899999976777779999999998753
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.80 E-value=1.8 Score=49.04 Aligned_cols=150 Identities=7% Similarity=0.024 Sum_probs=81.9
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEec
Q 005913 432 LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMA 502 (670)
Q Consensus 432 ~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~ 502 (670)
++..++.|+.+ ..+.+||..+.+-...-..... .-.+++...++..++.||.++ .+.+||..+..-...-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 56677777643 3578889887543322111111 111222223788888887654 68999988754332211
Q ss_pred -----ccCCCeeEEEEcCC-CCEEEEEEc--C-----CcEEEEECCCCc------EEEEEe-cCCC-CeEEEEEcCCCCE
Q 005913 503 -----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGE------CVRIFI-GHRS-MILSLAMSPDGRY 561 (670)
Q Consensus 503 -----~~~~~v~~v~~~p~-~~~l~tgs~--d-----g~I~iwd~~~~~------~~~~~~-~h~~-~I~~l~~sp~g~~ 561 (670)
.......++.+..+ +..++.|+. + ..+.+||+.+.. -..... .... .-.+++...++++
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 11122334555655 667777765 2 458999998876 222211 0111 1122333333777
Q ss_pred EEEEEC--------CCeEEEEeCCCCee
Q 005913 562 MASGDE--------DGTIMMWDLASGRC 581 (670)
Q Consensus 562 l~sg~~--------dg~I~iwDl~~~~~ 581 (670)
++.||. ...|.+||+.+..-
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 777774 34699999987654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.25 E-value=7 Score=42.35 Aligned_cols=220 Identities=11% Similarity=0.127 Sum_probs=124.5
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeeCCC-------------------------cc--EeEEEEec---CCCEEEEEE-CC
Q 005913 436 ILSSSADTTIRLWSTKLNANLVCYKGHN-------------------------YP--VWDVQFNP---QGHYFASSS-HD 484 (670)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-------------------------~~--V~~l~~sp---~g~~l~s~s-~d 484 (670)
+.||+..|.|+|+-+.+++.+..+...+ +. -..+++.. ||+|++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5678889999999988888777653211 00 11233332 677887776 45
Q ss_pred CcEEEEECCCCceeEEec-ccCCCeeEEEEc--CCCCEEEEEEc-------CCcE---------EE---EECCCCcEEEE
Q 005913 485 RTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSS-------DKTV---------RL---WDVSSGECVRI 542 (670)
Q Consensus 485 g~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~--p~~~~l~tgs~-------dg~I---------~i---wd~~~~~~~~~ 542 (670)
..|...+++..++-.++. .....+.+++|- |+..|+++++. ||.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 688888999888776665 345678888886 78899999874 3321 11 12222222221
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEeC-------------------------CC----
Q 005913 543 FIGHRSMILSLAMSPDGRYMASGDED---------------GTIMMWDL-------------------------AS---- 578 (670)
Q Consensus 543 ~~~h~~~I~~l~~sp~g~~l~sg~~d---------------g~I~iwDl-------------------------~~---- 578 (670)
+.- .+....+...++|.+.++.+.+ ..+.++++ +.
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 111 2233445667788888877643 13444443 32
Q ss_pred CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657 (670)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~ 657 (670)
+..+..+-.-......+..+|||++++.++ .+.+|.|+|+........... ...-..+..-..-.......+|.++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~---~~~~~~~~ae~e~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL---ADPRDVIVGEPELGLGPLHTTFDGR 388 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC---SCGGGGEEECCBCCSCEEEEEECSS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc---cCcccceEeeccCCCcccEEEECCC
Confidence 111111111112345688999999887766 678999999875322111000 0000111111123345678899998
Q ss_pred Cc
Q 005913 658 NL 659 (670)
Q Consensus 658 ~~ 659 (670)
|.
T Consensus 389 G~ 390 (638)
T 3sbq_A 389 GN 390 (638)
T ss_dssp SE
T ss_pred Cc
Confidence 84
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.93 E-value=1.4 Score=49.96 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=102.6
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCceeEEe-e------CCCccEeEEEEec-CCCEEEEEECC------CcEEEEEC
Q 005913 431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSM 492 (670)
Q Consensus 431 p~~~~L~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~l~~sp-~g~~l~s~s~d------g~v~lwd~ 492 (670)
.++..++.|+.+ ..+.+||..+++....- . .....-.+++..+ ++..++.||.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356666777643 46888998876544332 1 0111112233333 67777887754 35778888
Q ss_pred CCCceeEEecccCCC-eeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 005913 493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA 563 (670)
Q Consensus 493 ~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~I~~l~~sp~-g~~l~ 563 (670)
.+.+-...-...... -.+++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 765332221111111 11223324788888887654 79999998876443221 01112233555655 66777
Q ss_pred EEEC--C-----CeEEEEeCCCCe--------eeEEee-CCCcceEEEEEcCCCCEEEEEECC--------CcEEEEeCC
Q 005913 564 SGDE--D-----GTIMMWDLASGR--------CVTPLM-GHTSCVWTLAYSCEGSLLASGSAD--------CTVKLWDVT 619 (670)
Q Consensus 564 sg~~--d-----g~I~iwDl~~~~--------~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~D--------g~I~iwd~~ 619 (670)
.||. + +.+.+||+.+.. .+.... ...... +++...++.+++.||.+ ..|.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 468999988766 111111 111111 22233337788888743 458889887
Q ss_pred CCc
Q 005913 620 TST 622 (670)
Q Consensus 620 ~~~ 622 (670)
+..
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 653
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.14 E-value=11 Score=40.30 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=121.2
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee--eecCccCEEEEE
Q 005913 352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGHSGPVYSAS 428 (670)
Q Consensus 352 ~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~ 428 (670)
..-+.|+|.|||+ .|+++...|.|++++........... .+ ...... ..+..+....|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~------------~~------~~~~~~g~~~~~e~Gllgia 75 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL------------DI------HKLVQSGIKGGDERGLLSLA 75 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE------------EC------TTTBCCCCSSSCCCSEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec------------CC------cceeccCccccCCCcceeeE
Confidence 3568999999996 45556689999999643210000000 00 000000 012246778999
Q ss_pred EcCC----CCEEEEEeC--C----------CeEEEEeCCCC----------ceeEEee--CCCccEeEEEEecCCCEEEE
Q 005913 429 FSPL----GDFILSSSA--D----------TTIRLWSTKLN----------ANLVCYK--GHNYPVWDVQFNPQGHYFAS 480 (670)
Q Consensus 429 ~sp~----~~~L~s~s~--D----------g~I~lwd~~~~----------~~~~~~~--~h~~~V~~l~~sp~g~~l~s 480 (670)
|+|+ +.+.++-+. + ..|.-|.+... +.+..+. ........|.|.|||.++++
T Consensus 76 ~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~ 155 (463)
T 2wg3_C 76 FHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYII 155 (463)
T ss_dssp ECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEE
T ss_pred eCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEE
Confidence 9996 333333221 1 13444555421 1222222 12234678999999987777
Q ss_pred EECCC-----------------cEEEEECCCC--------------------ceeEEecccCCCeeEEEEcCC-----CC
Q 005913 481 SSHDR-----------------TARIWSMDRI--------------------QPLRIMAGHLSDVDCVRWHIN-----CN 518 (670)
Q Consensus 481 ~s~dg-----------------~v~lwd~~~~--------------------~~~~~~~~~~~~v~~v~~~p~-----~~ 518 (670)
.+..+ .|.-.+.+.. .+...-.+| .....++|+|. |.
T Consensus 156 ~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~ 234 (463)
T 2wg3_C 156 LGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININ 234 (463)
T ss_dssp ECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCS
T ss_pred eCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccc
Confidence 65432 2333344431 011112234 33457899986 33
Q ss_pred -EEEEEEcCC----cEEEEECCCC------cEEEEEecCC-CCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCC
Q 005913 519 -YIATGSSDK----TVRLWDVSSG------ECVRIFIGHR-SMILSLAMSP-------DGRYMASGDEDGTIMMWDLASG 579 (670)
Q Consensus 519 -~l~tgs~dg----~I~iwd~~~~------~~~~~~~~h~-~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~ 579 (670)
+++.+...| .-.|..+..+ .++..+..|. ..+..+.|-. .|.+|+ +...+.|....+...
T Consensus 235 l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~ 313 (463)
T 2wg3_C 235 LTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPV 313 (463)
T ss_dssp EEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC---
T ss_pred eEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCC
Confidence 444433212 1234433333 2344443221 4677777743 234444 444577766666433
Q ss_pred ee---eEEe-e--------CCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCC
Q 005913 580 RC---VTPL-M--------GHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVT 619 (670)
Q Consensus 580 ~~---~~~~-~--------~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~ 619 (670)
.. ...+ . .....+..+...|||.++++.... ..=+||.+.
T Consensus 314 ~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 314 TKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp --CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred CceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 21 1111 1 123578999999999988877521 233566665
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.65 E-value=3.7 Score=40.63 Aligned_cols=185 Identities=17% Similarity=0.067 Sum_probs=97.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~ 502 (670)
.|..++.... +.+.-. ||.|+.|-......+-.-......|..++.... +.++. . ||.|+.|-....-.+-.-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4566666532 222234 899999976643322111111235666666533 33444 4 8999999765422221111
Q ss_pred ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (670)
Q Consensus 503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~ 582 (670)
.-...|..++...+ ..++-+ ||.|+.|-......+.........|..++...+.. +.-. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCC
Confidence 12346777776544 333344 99999997654222111112234577777654432 2233 799999976543222
Q ss_pred EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (670)
Q Consensus 583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~ 622 (670)
..-..-...|..++...+. .++. .||.|..|-.....
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS
T ss_pred CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCC
Confidence 1111112457777765433 3333 59999999765543
No 355
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=90.99 E-value=0.2 Score=39.64 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005913 3 ELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (670)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~ 32 (670)
.++|+++|++||...||..+-++||+|+..
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~ 39 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL 39 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence 368999999999999999999999999653
No 356
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=82.99 E-value=1.4 Score=35.16 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCC
Q 005913 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS 35 (670)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~ 35 (670)
++.+++|.+|-.||+.-||..|--+|..|+...+.
T Consensus 3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 36789999999999999999999999999988764
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.49 E-value=20 Score=42.06 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (670)
..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888899999999999999999999999987753
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.72 E-value=62 Score=34.26 Aligned_cols=238 Identities=11% Similarity=0.040 Sum_probs=115.7
Q ss_pred cCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eeEEee-----C----CCccEeEEEEecC----CCEEEEEECC
Q 005913 422 GPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA---NLVCYK-----G----HNYPVWDVQFNPQ----GHYFASSSHD 484 (670)
Q Consensus 422 ~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~---~~~~~~-----~----h~~~V~~l~~sp~----g~~l~s~s~d 484 (670)
..-+.|+|.|++. .|+++...|.|++++..... .+..+. + .......|+|+|+ +..+++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999996 55666788999999754321 222211 1 1345788999996 4444443321
Q ss_pred ------------CcEEEEECCCC----------ceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCC-------------
Q 005913 485 ------------RTARIWSMDRI----------QPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK------------- 527 (670)
Q Consensus 485 ------------g~v~lwd~~~~----------~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg------------- 527 (670)
..|.-|.+... +.+..+. ........|+|.|+|.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 13444555321 1222221 1122367899999998777655432
Q ss_pred ----cEEEEECCCC---------------------cEEEEEecCCCCeEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005913 528 ----TVRLWDVSSG---------------------ECVRIFIGHRSMILSLAMSPD-----GR-YMASGDEDG----TIM 572 (670)
Q Consensus 528 ----~I~iwd~~~~---------------------~~~~~~~~h~~~I~~l~~sp~-----g~-~l~sg~~dg----~I~ 572 (670)
.|.-.|.... ..+. -.+|.. ...++|.|. |. +++.+...| .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333444321 0111 124444 457899996 34 444433212 123
Q ss_pred EEeCCCC------eeeEEeeCCC-cceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913 573 MWDLASG------RCVTPLMGHT-SCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (670)
Q Consensus 573 iwDl~~~------~~~~~~~~h~-~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 638 (670)
|..+..+ .++..+..|. ..+..+.|-. .|.+| .+...+.|....+...........-... ..
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g---~~ 327 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLG---TS 327 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEE---ET
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecC---Cc
Confidence 3333322 2344443332 4677787743 23344 4444466555554433211100000000 00
Q ss_pred ccccCCCCCCeEEEEEecCCcEEEEee
Q 005913 639 LKTLPTKSTPVYSLQFSRRNLLFAAGA 665 (670)
Q Consensus 639 ~~~~~~~~~~V~~l~fs~~~~~La~gs 665 (670)
..........+..+.+.|+|.++++..
T Consensus 328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 328 GSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp TSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccccccCcceEEEECCCCCEEEEec
Confidence 000011235689999999998887764
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.44 E-value=49 Score=32.92 Aligned_cols=186 Identities=9% Similarity=0.064 Sum_probs=111.8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcee-------E--EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC------
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANL-------V--CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI------ 495 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~-------~--~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~------ 495 (670)
++..++++.+.+|.|+--.+...... . .++.. ..+..+........++..+..|.++-......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45677888999999998766543221 1 12222 33445555556667888888898877765321
Q ss_pred ---cee---EEecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCC-------CcEEEEEecCCCCeEEEEEcCCC
Q 005913 496 ---QPL---RIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 496 ---~~~---~~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~sp~g 559 (670)
.++ -.+. ....|.++...+ +..+++..+..|.++...+.. |.....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 110 0111 123344443332 467888899999999887742 222222222 4556666665556
Q ss_pred CEEEEEECCCeEEEEeCCC---------CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 560 RYMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~---------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
..++..+.+|.+..+.... |.....+.. ...|.++..-.++..|++.+..|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6788899999999998643 222222222 34566665555666788899999999888754
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.69 E-value=91 Score=35.01 Aligned_cols=173 Identities=11% Similarity=0.107 Sum_probs=92.8
Q ss_pred CeEEEEeCCCCc--eeEEeeCCCccEe-EEEEecCCC-----EEEEEECC---CcEEEEECCC--CceeEEecccCCCee
Q 005913 443 TTIRLWSTKLNA--NLVCYKGHNYPVW-DVQFNPQGH-----YFASSSHD---RTARIWSMDR--IQPLRIMAGHLSDVD 509 (670)
Q Consensus 443 g~I~lwd~~~~~--~~~~~~~h~~~V~-~l~~sp~g~-----~l~s~s~d---g~v~lwd~~~--~~~~~~~~~~~~~v~ 509 (670)
..|+.|.+-+.. -...|.+....+. +...++++. .+++.+.+ ..+.+.+.+. ++ ...+.... . .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~-~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS-D-A 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT-T-C
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC-c-c
Confidence 568889887653 3455665444432 344455655 24444422 3456666553 32 22222111 1 1
Q ss_pred EEEEcCCCCEEEEE----------EcCCcEEEEECCCCc-------EEEE-Eec-CCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 510 CVRWHINCNYIATG----------SSDKTVRLWDVSSGE-------CVRI-FIG-HRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 510 ~v~~~p~~~~l~tg----------s~dg~I~iwd~~~~~-------~~~~-~~~-h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
.+..++.+.+++.. ...+.|...|+.++. ..+. +.. ....+..+.+..+ .++++...++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 22344556555532 246778999987631 2222 322 2335778888876 56677777764
Q ss_pred --EEEEeCCCCe-eeEE-eeCC-CcceEEEEEcCCCC-EEEEEEC---CCcEEEEeCC
Q 005913 571 --IMMWDLASGR-CVTP-LMGH-TSCVWTLAYSCEGS-LLASGSA---DCTVKLWDVT 619 (670)
Q Consensus 571 --I~iwDl~~~~-~~~~-~~~h-~~~V~sl~~s~~g~-~l~sgs~---Dg~I~iwd~~ 619 (670)
|.++|+.++. .+.. +... .+.+.....++++. ++++.+. -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6778876664 2333 2211 24566666777665 4444443 3668888776
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.57 E-value=52 Score=32.10 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=113.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc-
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWS---TKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ- 496 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd---~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~- 496 (670)
..+..+.-....+.|+.-+..|.++--. +........+. ....|..+.... +..+++.++.+|.++...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4555555555556666677778766433 22111100133 344566554422 56789999999999999875432
Q ss_pred ---eeE--EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEEe-cCCCCeEEEEEcCCCCEEE
Q 005913 497 ---PLR--IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMA 563 (670)
Q Consensus 497 ---~~~--~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~-~h~~~I~~l~~sp~g~~l~ 563 (670)
-.. .+. ....+..+........++..+..|.+..+.... .+-+..+. .....|.++...+++..++
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll 181 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLL 181 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEE
Confidence 111 122 224455555555666888888999988886531 11121111 1235566666666677899
Q ss_pred EEECCCeEEEEeCCC-------CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE--EeCCC
Q 005913 564 SGDEDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL--WDVTT 620 (670)
Q Consensus 564 sg~~dg~I~iwDl~~-------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i--wd~~~ 620 (670)
..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. +++..
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999999887642 2222233 22344555444334456777888888877 77654
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.27 E-value=63 Score=32.93 Aligned_cols=182 Identities=8% Similarity=-0.054 Sum_probs=88.6
Q ss_pred ccCEEEEEEcC--CCCEEEEEeCCC----eEEEEeCCCCceeEEeeC--------------CCccEeEEEEec-C-CCEE
Q 005913 421 SGPVYSASFSP--LGDFILSSSADT----TIRLWSTKLNANLVCYKG--------------HNYPVWDVQFNP-Q-GHYF 478 (670)
Q Consensus 421 ~~~V~~l~~sp--~~~~L~s~s~Dg----~I~lwd~~~~~~~~~~~~--------------h~~~V~~l~~sp-~-g~~l 478 (670)
...|.+|++.| .+...+ ++..| .|... .+.+..-..+.. ....|+++++.| + ...+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999998 444444 44444 34433 222222222111 112577888887 2 4456
Q ss_pred EEEECCCcEEEEECCCCceeEEecc-------------------cCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCc
Q 005913 479 ASSSHDRTARIWSMDRIQPLRIMAG-------------------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE 538 (670)
Q Consensus 479 ~s~s~dg~v~lwd~~~~~~~~~~~~-------------------~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~ 538 (670)
.+++..+.|...+ +.++.-..+.. ....+.+|.++|. .+.|++++.++.|...+ ..|+
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~ 209 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT 209 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence 6665555554432 23332222211 1235788999873 45555565555454432 2232
Q ss_pred EEEEEec-C------------CCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeC--CC---cceEEEEEcC
Q 005913 539 CVRIFIG-H------------RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSC 599 (670)
Q Consensus 539 ~~~~~~~-h------------~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~---~~V~sl~~s~ 599 (670)
.-..+.. . ...+.+++++|. ...|+.+...| |...+- .++.-..+.. .. ..+.++.++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 2222211 0 124889999985 45666666554 444442 2332222221 11 3456788876
Q ss_pred -CCCEEEEEE
Q 005913 600 -EGSLLASGS 608 (670)
Q Consensus 600 -~g~~l~sgs 608 (670)
+...|..++
T Consensus 288 ~~~~~l~~~t 297 (394)
T 3b7f_A 288 RDPRTVWVFP 297 (394)
T ss_dssp SCTTCEEEEE
T ss_pred CCCCEEEEEe
Confidence 334444443
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.84 E-value=58 Score=31.75 Aligned_cols=155 Identities=7% Similarity=0.060 Sum_probs=92.0
Q ss_pred ccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc----ee--EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913 421 SGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA----NL--VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (670)
Q Consensus 421 ~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~----~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~ 493 (670)
...|.++.... +..+++..+.+|.|+-..+.... -. ..++. ...+..+........++..+..|.+..+...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34455553321 46789999999999998875432 11 11222 2345555555566688888999998888753
Q ss_pred CCc-------eeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-------CCcEEEEEecCCCCeEEEEEcCC
Q 005913 494 RIQ-------PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPD 558 (670)
Q Consensus 494 ~~~-------~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~sp~ 558 (670)
... -+..+. .....|..+...+++.+++..+..|.+....+. .++-+..+ ...+.+..+.....
T Consensus 146 eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~ 224 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKE 224 (276)
T ss_dssp GSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESS
T ss_pred hCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCC
Confidence 211 111111 122455555555566788999999999888763 22333333 23445555444334
Q ss_pred CCEEEEEECCCeEEE--EeCC
Q 005913 559 GRYMASGDEDGTIMM--WDLA 577 (670)
Q Consensus 559 g~~l~sg~~dg~I~i--wDl~ 577 (670)
...++..+.+|.+.. ++..
T Consensus 225 ~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 225 EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEcCCCeEEEeeeCHH
Confidence 456777777888777 7654
No 364
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=73.25 E-value=3.4 Score=38.10 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005913 74 LRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (670)
Q Consensus 74 l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (670)
+-++|-+..|. -|+|+|+|-||.+.+.+.++|.|+-.|+.-|.
T Consensus 21 FL~yV~sq~DP---------spLLfYL~tdlYk~~~~Ke~rk~~~Ei~stFL 63 (211)
T 1iap_A 21 LLQHVALQFEP---------GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFL 63 (211)
T ss_dssp HHHHHHHHSCS---------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCc---------hhhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 45566666554 49999999999999999999999999988885
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.52 E-value=1.5e+02 Score=34.51 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~ 585 (670)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888899999999999999999999998765
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.05 E-value=1.1e+02 Score=30.52 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce-------eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC--CCce-----
Q 005913 432 LGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQP----- 497 (670)
Q Consensus 432 ~~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~--~~~~----- 497 (670)
+..+++.++.+|.|+-..+..... ...++. ...+..+........++..+..|.+..+... ....
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 577999999999999987654221 122333 3345555555566678888899999888776 3211
Q ss_pred --eEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEEe--cCCCCeEEEEEcCCCCEEEEE
Q 005913 498 --LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI--GHRSMILSLAMSPDGRYMASG 565 (670)
Q Consensus 498 --~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg 565 (670)
+..+. .....|.++...+.+.+++..+..|.++.-.+.. ++-+..+. .-.+.+..+....+...++..
T Consensus 187 ~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~ 266 (327)
T 3uc1_A 187 SGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAV 266 (327)
T ss_dssp BCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred CCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEE
Confidence 11111 1234566666666677899999999998877532 12222222 213445555544445567777
Q ss_pred ECCCeEEEEeCC
Q 005913 566 DEDGTIMMWDLA 577 (670)
Q Consensus 566 ~~dg~I~iwDl~ 577 (670)
+.+|.+.-++..
T Consensus 267 T~~G~~ir~~~~ 278 (327)
T 3uc1_A 267 TSGGGVIRTAAR 278 (327)
T ss_dssp EGGGCEEEEEGG
T ss_pred cCCCeEEEEehh
Confidence 888888888764
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.04 E-value=1.2e+02 Score=30.38 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=112.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCC------ceeE---EeeCCCccEeEEEEec---CCCEEEEEECCCc
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWS---TKLN------ANLV---CYKGHNYPVWDVQFNP---QGHYFASSSHDRT 486 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd---~~~~------~~~~---~~~~h~~~V~~l~~sp---~g~~l~s~s~dg~ 486 (670)
..+..+........|+.-+..|.++-.. +... ..+. .+. ....|..+..-+ +..+++.++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3454444444556666666777765443 3322 1111 122 233455544333 5789999999999
Q ss_pred EEEEECCCCce-------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC--C----Cc---EEEEEe-cCCCC
Q 005913 487 ARIWSMDRIQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--S----GE---CVRIFI-GHRSM 549 (670)
Q Consensus 487 v~lwd~~~~~~-------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~--~----~~---~~~~~~-~h~~~ 549 (670)
++...+..... ...+.. ...+..+........|+..+..|.+..+.+. . ++ -+..+. .....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99988654221 112222 2345555444556678888899988888765 2 11 111111 23455
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCC-------eeeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASG-------RCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-------~~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
|.++...+.+.+++..+..|.++.-.+..- +-+..+ ..-.+.+..+....+...++..+.+|.+..++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777777667778999999999998876421 112222 22133455544444455677778888887777654
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.71 E-value=1.2e+02 Score=30.02 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=126.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
++..++++.+.+|.|+--.+........ .+.......+... ..+..+......+.++..+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT-------------------GGKGLSSFDLNDG-DEIVIALCVNTHDYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS-------------------SCCCEECCCCCTT-CCEEEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc-------------------CCCCceecccCCC-CEEEEEEEECCCCEEEEEE
Confidence 4667888899999999877653211000 0001111112222 3344444444566777778
Q ss_pred CCCeEEEEeCC---CC------ce---eEEeeCCCccEeEEEEec---CCCEEEEEECCCcEEEEECCCC-------cee
Q 005913 441 ADTTIRLWSTK---LN------AN---LVCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRI-------QPL 498 (670)
Q Consensus 441 ~Dg~I~lwd~~---~~------~~---~~~~~~h~~~V~~l~~sp---~g~~l~s~s~dg~v~lwd~~~~-------~~~ 498 (670)
..|.++-.... .. .. ...+.. ...|..+...+ +..+++..+..|.++...+... ...
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~ 144 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV 144 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE
Confidence 88887766543 11 10 111222 23344443332 4678889999999999887432 112
Q ss_pred EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~-h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
..+.. ...+..+........++..+.+|.+..+.... ++-++.+.- ....|.++..-.++..+++.+..|.
T Consensus 145 i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 145 IKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp BCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred EecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 12222 34555555555566788888999988887642 112222221 2345666666556677889999999
Q ss_pred EEEEeCCCC---------eeeEEee-CCCcceEEE-EEcCCCCEEEEEECCCcEEEEeC
Q 005913 571 IMMWDLASG---------RCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 571 I~iwDl~~~---------~~~~~~~-~h~~~V~sl-~~s~~g~~l~sgs~Dg~I~iwd~ 618 (670)
....++..- ..+..+. ...+.+.++ .+. +..-++..+..|.+.-..+
T Consensus 224 ~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 224 GKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEG
T ss_pred eEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence 999887421 1121222 222344433 444 4445566666775544444
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=63.04 E-value=1.4e+02 Score=30.48 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=108.9
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCC---------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-------
Q 005913 430 SPLGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------- 493 (670)
Q Consensus 430 sp~~~~L~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~------- 493 (670)
-|+..++++.+.+|.|+--.+... .....++. ...+..+........++..+..|.++-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 467788999999999997654321 12223332 3445555555566777778888887766542
Q ss_pred --CCceeEEe-c-ccCCCeeEEEEc---CCCCEEEEEEcCCcEEEEECCC-------CcEEEEEecCCCCeEEEEEcCCC
Q 005913 494 --RIQPLRIM-A-GHLSDVDCVRWH---INCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (670)
Q Consensus 494 --~~~~~~~~-~-~~~~~v~~v~~~---p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~sp~g 559 (670)
.|.++..+ . .....|.++..- ..+.+|+.++..|.++...+.. |.....+.. .+.+..+......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 12222111 1 123445554332 2456899999999999887632 222122222 3455555555555
Q ss_pred CEEEEEECCCeEEEEeCCC---------CeeeEEeeCCCcceEEEEEcC-------------------------------
Q 005913 560 RYMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSC------------------------------- 599 (670)
Q Consensus 560 ~~l~sg~~dg~I~iwDl~~---------~~~~~~~~~h~~~V~sl~~s~------------------------------- 599 (670)
..++..+.+|.+..++... |...-.+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888899988887532 11111121 223455544433
Q ss_pred ----CCCEEEEEECCCcEEEEeCCC
Q 005913 600 ----EGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 600 ----~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++..+++.+..|..+...+..
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHH
Confidence 345788888999888887654
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=60.93 E-value=1.4e+02 Score=29.79 Aligned_cols=188 Identities=8% Similarity=-0.005 Sum_probs=107.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC---------CCce
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---------RIQP 497 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~---------~~~~ 497 (670)
|+...+++.+.+|.|+--.+.... ....++.. ..+..+........++..+..|.++-+... .|.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 556778889999999876544211 11123333 334445555566677778888887766542 2222
Q ss_pred eEEe-c-ccCCCeeEE-EEcC--CCCEEEEEEcCCcEEEEECCC------CcEEE--EEecCCCCeEEEEEcCCCCEEEE
Q 005913 498 LRIM-A-GHLSDVDCV-RWHI--NCNYIATGSSDKTVRLWDVSS------GECVR--IFIGHRSMILSLAMSPDGRYMAS 564 (670)
Q Consensus 498 ~~~~-~-~~~~~v~~v-~~~p--~~~~l~tgs~dg~I~iwd~~~------~~~~~--~~~~h~~~I~~l~~sp~g~~l~s 564 (670)
+..+ . .....|.++ .... ++.+++..+.+|.++...+.. ++-+. .+.. .+.+..+........++.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 2111 1 122345544 3332 256899999999999987741 11121 2222 255655555555667888
Q ss_pred EECCCeEEEEeCCCCe-------eeEEeeC-CCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 005913 565 GDEDGTIMMWDLASGR-------CVTPLMG-HTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT 620 (670)
Q Consensus 565 g~~dg~I~iwDl~~~~-------~~~~~~~-h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~ 620 (670)
.+.+|.+..+....-. -+.-+.- ....|.++..-+++. .|++.+..|..+..++..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 8999999888764211 1111111 224466654434444 788888898888777654
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.88 E-value=1.5e+02 Score=30.08 Aligned_cols=173 Identities=10% Similarity=-0.001 Sum_probs=85.6
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceeEEe--eCCCccEeEEEEec--CCCEEEEEECCC----cEEEEECCCCceeEEecc-
Q 005913 434 DFILSSSADTTIRLWSTKL-NANLVCY--KGHNYPVWDVQFNP--QGHYFASSSHDR----TARIWSMDRIQPLRIMAG- 503 (670)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~~--~~h~~~V~~l~~sp--~g~~l~s~s~dg----~v~lwd~~~~~~~~~~~~- 503 (670)
..|.+|+..| +.+++... +..-..+ ......|.+|++.| .+..+ +++..| .|.. ..+.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~-s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFR-SDDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEE-ESSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEE-eCCCCCCceECCcc
Confidence 3566777766 55554332 2222211 12345699999998 44444 444444 3333 2333332222211
Q ss_pred -------------cCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEec-------------------CCCC
Q 005913 504 -------------HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------HRSM 549 (670)
Q Consensus 504 -------------~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~ 549 (670)
....|.++++.|. .+.+.+++..+.|...+- .|+.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 1124778888872 456666666666655432 2222222211 1235
Q ss_pred eEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeC-----C--------CcceEEEEEcCC-CCEEEEEECCC
Q 005913 550 ILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG-----H--------TSCVWTLAYSCE-GSLLASGSADC 611 (670)
Q Consensus 550 I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~-----h--------~~~V~sl~~s~~-g~~l~sgs~Dg 611 (670)
+.+|.++|. ...|+.+..++.|...+ ..|+.-..+.. + ...+.++.++|. ...|..++..+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 789999983 34455554445454443 22222222210 0 134889999885 35666666544
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.21 E-value=1.4e+02 Score=29.39 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=125.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
|+..++++.+.+|.|+--.+........ .+.......+..+ ..+..+......+.|+..+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT 60 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRR-------------------GGKGKSAARIKEE-DFIDRLLVANTHDHILCFS 60 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------------------CCEEEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhcc-------------------CCCCceeeeeCCC-CEEEEEEEECCCCEEEEEE
Confidence 4566788889999998776653111000 0000011112222 3344444444556677777
Q ss_pred CCCeEEEEeC---CCC------ceeE---EeeCCCccEeEEEEe---cCCCEEEEEECCCcEEEEECCCCc-----eeE-
Q 005913 441 ADTTIRLWST---KLN------ANLV---CYKGHNYPVWDVQFN---PQGHYFASSSHDRTARIWSMDRIQ-----PLR- 499 (670)
Q Consensus 441 ~Dg~I~lwd~---~~~------~~~~---~~~~h~~~V~~l~~s---p~g~~l~s~s~dg~v~lwd~~~~~-----~~~- 499 (670)
..|.++-+.. ... ..+. .+. ....|..+..- .++.+++.++..|.++...+.... -+.
T Consensus 61 ~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~ 139 (307)
T 1zi0_A 61 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA 139 (307)
T ss_dssp TTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEES
T ss_pred CCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEE
Confidence 7887665543 221 1111 122 23345555432 356689999999999998764211 111
Q ss_pred -EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913 500 -IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGT 570 (670)
Q Consensus 500 -~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~ 570 (670)
.+..+ ..+..+........++..+.+|.+..++... .+-++.+. .....|.++...+++..+++.+..|.
T Consensus 140 i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 140 IKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp SCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred EEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 12223 4555554444556788888899888777632 11222111 13345777665556678899999999
Q ss_pred EEEEeCCCC---------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 571 IMMWDLASG---------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 571 I~iwDl~~~---------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
++-.++..- .....+..-.+.+-.+....+...++..+.+|.+.-+++..
T Consensus 219 ~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 998877321 11222222234555544433445566777788777666644
No 373
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=59.18 E-value=4.5 Score=37.21 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005913 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (670)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (670)
-|+|+|+|.||.+.+.+.++|.|+-.+...|.
T Consensus 50 ~~LlfyL~~d~yk~~~~Ke~rk~a~ei~stFL 81 (203)
T 3cx8_B 50 GPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFL 81 (203)
T ss_dssp HHHHHHHHHHHHHTSCTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999988885
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=57.12 E-value=1.5e+02 Score=29.13 Aligned_cols=187 Identities=9% Similarity=0.013 Sum_probs=106.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeE---------EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC--------
Q 005913 431 PLGDFILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-------- 493 (670)
Q Consensus 431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-------- 493 (670)
|+...+++.+.+|.|+--.+....... .++.+ ..+..+........++..+..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999877765433221 12222 234444445556677777888887766542
Q ss_pred -CCceeEEe-c-ccCCCeeEEEEc---CCCCEEEEEEcCCcEEEEECCC-------CcEEEEEecCCCCeEEEEEcCCCC
Q 005913 494 -RIQPLRIM-A-GHLSDVDCVRWH---INCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDGR 560 (670)
Q Consensus 494 -~~~~~~~~-~-~~~~~v~~v~~~---p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~sp~g~ 560 (670)
.|.++..+ . .....|.++..- .++.+++..+.+|.++...+.. |.....+..+ +.+..+.......
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22222111 1 123345555332 3566889999999999987641 2111122333 5565555555556
Q ss_pred EEEEEECCCeEEEEeCCC---------CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 561 YMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 561 ~l~sg~~dg~I~iwDl~~---------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 788888999988887642 11111222 234566665545566788889999998887643
No 375
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=56.76 E-value=2.8 Score=39.49 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005913 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (670)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (670)
-|+|+|+|-||.+.+.+.++|.|+-.|+.-|.
T Consensus 86 spLLfYL~tdlYk~~~~Ke~Rk~a~Ei~stFL 117 (246)
T 3ab3_B 86 GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFL 117 (246)
T ss_dssp HHHHHHHHHHHHC-------CCTTHHHHHHTT
T ss_pred hhhHHHHHHHHHhccChHHHHHHHHHHHHHHc
Confidence 49999999999999999999999999888875
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=54.23 E-value=2.7e+02 Score=31.11 Aligned_cols=194 Identities=8% Similarity=-0.002 Sum_probs=103.4
Q ss_pred EEEEE-EcCCCCEEEEE-eCC----CeEEEEeCCCCceeE-Eee-CCCc------cEeEEEEecCCCEEEEE--------
Q 005913 424 VYSAS-FSPLGDFILSS-SAD----TTIRLWSTKLNANLV-CYK-GHNY------PVWDVQFNPQGHYFASS-------- 481 (670)
Q Consensus 424 V~~l~-~sp~~~~L~s~-s~D----g~I~lwd~~~~~~~~-~~~-~h~~------~V~~l~~sp~g~~l~s~-------- 481 (670)
...+. ++|++++++.+ |.. ..|+++|+.+++.+. .+. .-.. ....++|..+...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 33445 88999876643 333 369999999887652 111 0000 11345887544444432
Q ss_pred --ECCCcEEEEECCCCc--eeEEecccCCCe-eEEEEcCCCCE-----EEEEEcC---CcEEEEECCC--CcEEEEEecC
Q 005913 482 --SHDRTARIWSMDRIQ--PLRIMAGHLSDV-DCVRWHINCNY-----IATGSSD---KTVRLWDVSS--GECVRIFIGH 546 (670)
Q Consensus 482 --s~dg~v~lwd~~~~~--~~~~~~~~~~~v-~~v~~~p~~~~-----l~tgs~d---g~I~iwd~~~--~~~~~~~~~h 546 (670)
+....|+.|.+-+.. -..++.+....+ .....++++.+ +++.+.+ ..+++.|... ++.+......
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 123568888876542 334455444443 23444566652 3333322 3566667653 4333332222
Q ss_pred CCCeEEEEEcCCCCEEEEE----------ECCCeEEEEeCCCCe-------eeEE-ee-CCCcceEEEEEcCCCCEEEEE
Q 005913 547 RSMILSLAMSPDGRYMASG----------DEDGTIMMWDLASGR-------CVTP-LM-GHTSCVWTLAYSCEGSLLASG 607 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg----------~~dg~I~iwDl~~~~-------~~~~-~~-~h~~~V~sl~~s~~g~~l~sg 607 (670)
.. .+..++++.+++.. ...+.|...|+.++. .... +. .....+.++.|..+ .++++.
T Consensus 291 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 291 -DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp -TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred -cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 21 22344556555532 246789999987642 1222 22 23356778888865 577777
Q ss_pred ECCCc--EEEEeCCCC
Q 005913 608 SADCT--VKLWDVTTS 621 (670)
Q Consensus 608 s~Dg~--I~iwd~~~~ 621 (670)
..++. |.++++.++
T Consensus 367 ~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENE 382 (711)
T ss_dssp EETTEEEEEEECEETT
T ss_pred EECCEEEEEEEECCCC
Confidence 77775 566665443
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.41 E-value=37 Score=40.65 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (670)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566777888999999999999999999999988753
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.16 E-value=34 Score=40.92 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~ 586 (670)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999987753
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=51.09 E-value=3.1e+02 Score=30.93 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec-------Ccc
Q 005913 351 HNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-------HSG 422 (670)
Q Consensus 351 ~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~ 422 (670)
.+.|.+++++|. ...+.+++..+.|...+=.. . ....+.. ...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--~---------------------------tW~~~~~~~~~~~~~~~ 64 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--S---------------------------KWIPLNDFIEAQDMNIM 64 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--T---------------------------EEEESCTTCCGGGGGGC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--C---------------------------CeeECccCCCcccccCC
Confidence 357999999985 45566676767654443111 0 0111111 134
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCe----EEEE-eCCCCceeEEeeCC---------CccEeEEEEecC-CCEEEEEECCCc
Q 005913 423 PVYSASFSPLG-DFILSSSADTT----IRLW-STKLNANLVCYKGH---------NYPVWDVQFNPQ-GHYFASSSHDRT 486 (670)
Q Consensus 423 ~V~~l~~sp~~-~~L~s~s~Dg~----I~lw-d~~~~~~~~~~~~h---------~~~V~~l~~sp~-g~~l~s~s~dg~ 486 (670)
.|.+|++.|.. ..++.+..... -.|| ..+.++.-...... ...+..++++|. ...++.+...+.
T Consensus 65 ~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 65 GTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp SEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred ceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 68999999853 34444432211 2333 33333332222110 113556888874 345555553433
Q ss_pred EEEEECCCCceeEEecc------cCCCeeEEEEcCC-CCEEEEEEcC
Q 005913 487 ARIWSMDRIQPLRIMAG------HLSDVDCVRWHIN-CNYIATGSSD 526 (670)
Q Consensus 487 v~lwd~~~~~~~~~~~~------~~~~v~~v~~~p~-~~~l~tgs~d 526 (670)
| +...+.++.-..+.. ....+..+.++|. +..++++..+
T Consensus 145 l-~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 145 I-WKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp E-EEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred E-EEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 2 223344443333321 1245788999884 4566666654
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=50.28 E-value=2.2e+02 Score=28.87 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=105.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----------eEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lw 490 (670)
.+..++.+.-..+.+.-+.||.|+.|-...... ...+.. ....|..++. -..+.+....+|.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEe
Confidence 455566766667777778899999996542111 111111 1224555544 34456666789999999
Q ss_pred ECCCC-c----------eeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-c---------EE-EEEec-C
Q 005913 491 SMDRI-Q----------PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-E---------CV-RIFIG-H 546 (670)
Q Consensus 491 d~~~~-~----------~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~---------~~-~~~~~-h 546 (670)
-.... + ....+. .....|..++........++-..||.|+.|-.... + .. ..+.. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 65321 0 011111 12234666665443356666778999999964321 1 11 11111 1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-----------eeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----------CVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-----------~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
...|..++... .+.++-..+|.|+.|=....- ....+.. ....|..++.. ....+....||.|.
T Consensus 264 ~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~ 339 (389)
T 3kci_A 264 GLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVY 339 (389)
T ss_dssp TSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEE
T ss_pred CCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEE
Confidence 22466666553 344555788999999653210 1111111 12346666553 34556668899999
Q ss_pred EEeCCCCc
Q 005913 615 LWDVTTST 622 (670)
Q Consensus 615 iwd~~~~~ 622 (670)
.|=.....
T Consensus 340 ~wG~n~~G 347 (389)
T 3kci_A 340 TWGDNDEG 347 (389)
T ss_dssp EEECCTTS
T ss_pred EeeCCCCC
Confidence 99876543
No 381
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=50.07 E-value=17 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC
Q 005913 5 QVVEFVATYLKKKGFSEAENALQAEIQRN 33 (670)
Q Consensus 5 ~~~~~v~~yl~~~~~~~~e~~~~~e~~~~ 33 (670)
-++.+|.|||.-.||.-|-+.|..|++..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47889999999999999999999999875
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=49.32 E-value=2.3e+02 Score=28.91 Aligned_cols=187 Identities=10% Similarity=0.071 Sum_probs=103.0
Q ss_pred eEEEEeCCCC--ceeEEeeC------CCccEeEEEEe---cC----CCEEEEE-ECCCcEEEEECCCCceeEEecccCCC
Q 005913 444 TIRLWSTKLN--ANLVCYKG------HNYPVWDVQFN---PQ----GHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSD 507 (670)
Q Consensus 444 ~I~lwd~~~~--~~~~~~~~------h~~~V~~l~~s---p~----g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~~~~~ 507 (670)
.|.+||+.+. +.++.+.- ....+.++.+. |. +.+...+ +..+.|.++|+.+++.-+....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 4677777777 66666543 23457778777 22 3343333 35678999999999887766322
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCeEEEEeCC-----C
Q 005913 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD----GRYMASGDEDGTIMMWDLA-----S 578 (670)
Q Consensus 508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~----g~~l~sg~~dg~I~iwDl~-----~ 578 (670)
|.|+....++ -+|.-.- + ...|..|++||+ ++.|+-....+. ++|.+. .
T Consensus 201 -----~~pd~~~~~~--i~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~ 258 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQ 258 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSS
T ss_pred -----CccccCcceE--ECCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhC
Confidence 3444111111 1222111 1 245889999998 777777665442 333322 1
Q ss_pred C---eeeEEe--eCCCcceEEEEEc-CCCCEEEEEECCCcEEEEeCCC-CccccccccccCCcccccccccCCCCCCeEE
Q 005913 579 G---RCVTPL--MGHTSCVWTLAYS-CEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 651 (670)
Q Consensus 579 ~---~~~~~~--~~h~~~V~sl~~s-~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 651 (670)
. ..+..+ ++..+.-..++++ .+|.++++--..+.|..|+..+ .-... ....+..-+ .-..+..
T Consensus 259 ~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~---------n~~~l~~d~-~l~~pd~ 328 (381)
T 3q6k_A 259 KGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMK---------NTDVVYTSS-RFVFGTD 328 (381)
T ss_dssp TTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGG---------GEEEEEECT-TCCSEEE
T ss_pred cchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccC---------ceEEEEECC-CccccCe
Confidence 1 112221 1111233456775 6788888888889999999875 22110 011122222 3335667
Q ss_pred EEEecCCcEEEEee
Q 005913 652 LQFSRRNLLFAAGA 665 (670)
Q Consensus 652 l~fs~~~~~La~gs 665 (670)
+++.++|.+.+..+
T Consensus 329 ~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 329 ISVDSKGGLWFMSN 342 (381)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCeEEEEEC
Confidence 77777776665543
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.82 E-value=66 Score=35.19 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCeeEEEEcCCCCEEEEEEcC------------CcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEE
Q 005913 506 SDVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASG 565 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg 565 (670)
+....|+|+|.|+++++-..+ ..+.+.+..+++..+.+.++. ..++.++|+||++.|++.
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 345779999999976664322 245666777888887777654 579999999999988765
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.11 E-value=70 Score=34.77 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCeeEEEEcCCCCEEEEEEc------------CCcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEE
Q 005913 506 SDVDCVRWHINCNYIATGSS------------DKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGD 566 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~------------dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~ 566 (670)
+....|.|.++|++.++... ...|..++..+++..+.+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 55678999999987774321 125777787788877766543 35689999999999888764
No 385
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.21 E-value=70 Score=35.01 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCEEEEEECC------------CeEEEEeCCCCeeeEEeeCCC-cceEEEEEcCCCCEEEEE
Q 005913 549 MILSLAMSPDGRYMASGDED------------GTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG 607 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~d------------g~I~iwDl~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sg 607 (670)
..-.|+|+|.|+++++-..+ ..+.+.+..+++...-+.++. ..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35679999999966654322 346666777777665565554 689999999999887765
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.28 E-value=1.2e+02 Score=33.95 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=30.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC
Q 005913 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461 (670)
Q Consensus 422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~ 461 (670)
..|.++.+. ..++++-+.|+++|+|++.++.++....-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346665554 78999999999999999999988876654
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.20 E-value=3.1e+02 Score=27.77 Aligned_cols=239 Identities=13% Similarity=-0.003 Sum_probs=128.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEE
Q 005913 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS 439 (670)
Q Consensus 360 s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~ 439 (670)
-|+..++++.+.+|.|+--.+....... ..+....-..+. ....+..+........|+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~-------------------r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~f 63 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQR-------------------RGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTF 63 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTC-------------------CCCCCSEEEECS-CCCCEEEEEEECTTCEEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhc-------------------cCCCCceecccC-CCCEEEEEEEecCCCEEEEE
Confidence 3677889999999999876543210000 000011111222 23455555555566777777
Q ss_pred eCCCeEEEEe---CCC------CceeE---EeeCCCccEeEEEEec---CCCEEEEEECCCcEEEEECCCCce-----e-
Q 005913 440 SADTTIRLWS---TKL------NANLV---CYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQP-----L- 498 (670)
Q Consensus 440 s~Dg~I~lwd---~~~------~~~~~---~~~~h~~~V~~l~~sp---~g~~l~s~s~dg~v~lwd~~~~~~-----~- 498 (670)
+..|.++-+. +.. +..+. .+. ....|.++.... .+.+++.++..|.++...+..... +
T Consensus 64 T~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ 142 (370)
T 3l6v_A 64 TSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKI 142 (370)
T ss_dssp ETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEE
T ss_pred eCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceE
Confidence 7788776554 321 11111 122 234455544332 456899999999999988643211 1
Q ss_pred -EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----C---cEEEEEe-cCCCCeEEEEEcC------------
Q 005913 499 -RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----G---ECVRIFI-GHRSMILSLAMSP------------ 557 (670)
Q Consensus 499 -~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~----~---~~~~~~~-~h~~~I~~l~~sp------------ 557 (670)
..+.. ...+..+........++..+.+|.+..++... + +-++.+. .....|.++...+
T Consensus 143 ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~ 221 (370)
T 3l6v_A 143 AINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDE 221 (370)
T ss_dssp SSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------
T ss_pred EEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccc
Confidence 11222 23444444444556788888888887776531 1 1122111 1234455554443
Q ss_pred -----------------------CCCEEEEEECCCeEEEEeCCCC-------eeeE--EeeCCCcceEEEEEcCCCCEEE
Q 005913 558 -----------------------DGRYMASGDEDGTIMMWDLASG-------RCVT--PLMGHTSCVWTLAYSCEGSLLA 605 (670)
Q Consensus 558 -----------------------~g~~l~sg~~dg~I~iwDl~~~-------~~~~--~~~~h~~~V~sl~~s~~g~~l~ 605 (670)
++..+++.+..|..+...+..- +-+. .+....+.+..+.+..++..++
T Consensus 222 ~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~ 301 (370)
T 3l6v_A 222 SAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVM 301 (370)
T ss_dssp -------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred cccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEE
Confidence 4568999999999998876421 1122 2222334555554444445666
Q ss_pred EEECCCcEEEEeCCC
Q 005913 606 SGSADCTVKLWDVTT 620 (670)
Q Consensus 606 sgs~Dg~I~iwd~~~ 620 (670)
..+..|.+.-..+..
T Consensus 302 liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 302 LISDGGTLVRTRGSE 316 (370)
T ss_dssp EEETTCCEEEEEGGG
T ss_pred EEcCCCeEEEeeHhh
Confidence 677777776666543
No 388
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.44 E-value=44 Score=37.37 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=30.4
Q ss_pred CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec
Q 005913 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG 545 (670)
Q Consensus 507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 545 (670)
.|.|+.+ +..++++-+.|+++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 478999999999999999999998877653
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.87 E-value=1.7e+02 Score=31.87 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=42.9
Q ss_pred CeEEEEEcCCCCEEEEEEC------------CCeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEE
Q 005913 549 MILSLAMSPDGRYMASGDE------------DGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS 608 (670)
Q Consensus 549 ~I~~l~~sp~g~~l~sg~~------------dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs 608 (670)
....|+|.++|.+.++... ...+..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4678999999987774321 226777787778765555543 35689999999999887764
No 390
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=33.41 E-value=3.9e+02 Score=26.90 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=103.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------e---eEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA--------N---LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (670)
Q Consensus 423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--------~---~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lw 490 (670)
.|..++.. ....+.-..||.|+.|-..... . ...+.. ....+..++.+.-..+.+.-..||.|+.|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34455443 4556666788999999654211 1 111111 22335556676666677777889999999
Q ss_pred ECCCC--------c---eeEEecc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-Cc----------EEEEEec-C
Q 005913 491 SMDRI--------Q---PLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE----------CVRIFIG-H 546 (670)
Q Consensus 491 d~~~~--------~---~~~~~~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~----------~~~~~~~-h 546 (670)
-.... . ....+.. ....|..|+.. ....++-..+|.|+.|-... ++ ....+.. .
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 65321 0 1111111 11245555543 44556666899999996532 11 1111111 2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-----------eeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----------CVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVK 614 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-----------~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~ 614 (670)
...|..++......+.+.-..||.|+.|=....- ....+.. ....|..++.. ....+.-..||.|.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~ 287 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVY 287 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEE
Confidence 2357777765433566677889999999643210 1111111 12246666554 33455557899999
Q ss_pred EEeCCC
Q 005913 615 LWDVTT 620 (670)
Q Consensus 615 iwd~~~ 620 (670)
.|=...
T Consensus 288 ~wG~n~ 293 (389)
T 3kci_A 288 TWGKGD 293 (389)
T ss_dssp EEECCG
T ss_pred EEeCCC
Confidence 997644
No 391
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.43 E-value=6.5e+02 Score=28.25 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=75.2
Q ss_pred ccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecC-CCEEEEEECCCc----E
Q 005913 421 SGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQ-GHYFASSSHDRT----A 487 (670)
Q Consensus 421 ~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~-g~~l~s~s~dg~----v 487 (670)
.+.|.+|+++|.. ..+++++..+.|...+= .+..-..+..+ ...|.++++.|. ...++.+..... .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999964 45666666676655542 23322222221 246999999984 334444433211 2
Q ss_pred EEE-ECCCCceeEEeccc-------C--CCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEec------CCCCe
Q 005913 488 RIW-SMDRIQPLRIMAGH-------L--SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMI 550 (670)
Q Consensus 488 ~lw-d~~~~~~~~~~~~~-------~--~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~I 550 (670)
.|| ..+.++.-..+... . ..+.+++++|. .+.++++...+.|.. ....|+.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 333 44444433322210 0 13567888875 456666654443322 2222332222211 12457
Q ss_pred EEEEEcCC-CCEEEEEECC
Q 005913 551 LSLAMSPD-GRYMASGDED 568 (670)
Q Consensus 551 ~~l~~sp~-g~~l~sg~~d 568 (670)
..+.++|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88999884 4466666554
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.63 E-value=3.8e+02 Score=25.37 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=77.2
Q ss_pred EEEEEECCCcEEEEECCCCce-eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---C----CcEEEEE--ecC
Q 005913 477 YFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---S----GECVRIF--IGH 546 (670)
Q Consensus 477 ~l~s~s~dg~v~lwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~----~~~~~~~--~~h 546 (670)
..++.+.+|.|+--....... ...+... ..+..+........|+..+..|.++-+.+. . |..+..+ ...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 345566667666554432110 0012222 233333333344566667778876665432 1 2211101 112
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-------CCeeeEEeeCCCcceEEEEEc-CCCCEEEEEECCCcEEEEeC
Q 005913 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLA-------SGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSADCTVKLWDV 618 (670)
Q Consensus 547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-------~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~Dg~I~iwd~ 618 (670)
...|.++....++.+|+.++..|.++...+. .|.....+... ..+..+... .++..|+..+.+|.+..+++
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 3457666443456778899999999999873 23333333322 344444444 34567888999999988887
Q ss_pred CC
Q 005913 619 TT 620 (670)
Q Consensus 619 ~~ 620 (670)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 393
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=25.21 E-value=7.3e+02 Score=27.47 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccC------CCeeEEEEcC-CCCEEEEEEcC--------C
Q 005913 464 YPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL------SDVDCVRWHI-NCNYIATGSSD--------K 527 (670)
Q Consensus 464 ~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~------~~v~~v~~~p-~~~~l~tgs~d--------g 527 (670)
..|..|+++| +...++++...+.|..++-....-........ ..|.+|+++| +.+.++++... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred cEEEEECCCCcEEEEEecCCC---------CeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcc------
Q 005913 528 TVRLWDVSSGECVRIFIGHRS---------MILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC------ 591 (670)
Q Consensus 528 ~I~iwd~~~~~~~~~~~~h~~---------~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~------ 591 (670)
.-.......|+.-........ .+.+|+++| +...++.+...|.-.......|+.-..+..-...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~~~ 182 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYIYD 182 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCBSC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCcccccC
Q ss_pred -----------eEEEEEcCCCC-------EEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913 592 -----------VWTLAYSCEGS-------LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653 (670)
Q Consensus 592 -----------V~sl~~s~~g~-------~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 653 (670)
+..+.++|... .+..+..++.-.||.-..+. ..+..+..++. ......+.
T Consensus 183 p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG-----------~tW~~~~~~p~-~~~~~~~~ 250 (737)
T 2cn3_A 183 PNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGG-----------VTWKAVPGQPK-GLLPHHGV 250 (737)
T ss_dssp TTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTT-----------SCCEECTTCCC-SSEEEEEE
T ss_pred cccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCC-----------CceEECCCCCC-cccceEEE
Q ss_pred EecCCcEEEEeeC
Q 005913 654 FSRRNLLFAAGAL 666 (670)
Q Consensus 654 fs~~~~~La~gs~ 666 (670)
++|++.++++...
T Consensus 251 ~~~~~~l~~~~~d 263 (737)
T 2cn3_A 251 LASNGMLYITYGD 263 (737)
T ss_dssp ECTTSEEEEEEES
T ss_pred ECCCCeEEEEecC
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.79 E-value=4.7e+02 Score=24.74 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=78.4
Q ss_pred EEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-------CceeEE-ec-cc
Q 005913 435 FILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-------IQPLRI-MA-GH 504 (670)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-------~~~~~~-~~-~~ 504 (670)
.+++.+.+|.|+--....... ...++... .+..+........++..+..|.++-+.... +.++.. +. ..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 455667777776655432211 11223333 343444444455666677788776665422 221110 11 12
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-------CCcEEEEEecCCCCeEEEEEc-CCCCEEEEEECCCeEEEEeC
Q 005913 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDL 576 (670)
Q Consensus 505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~s-p~g~~l~sg~~dg~I~iwDl 576 (670)
...|.++....++.+|+.++..|.+....+. .|.....+.. .+.+..+... ..+..++..+.+|.+..++.
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 3456666433456778889999999988763 2333333332 2455555555 34568888999999999987
Q ss_pred C
Q 005913 577 A 577 (670)
Q Consensus 577 ~ 577 (670)
.
T Consensus 162 ~ 162 (256)
T 1zvt_A 162 S 162 (256)
T ss_dssp G
T ss_pred H
Confidence 4
No 395
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=23.31 E-value=5.9e+02 Score=25.73 Aligned_cols=272 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005913 370 FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449 (670)
Q Consensus 370 ~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd 449 (670)
..+|.|..|-.....+........ ....-.....-..|..|+.. +.+.+.-..||.|+.|-
T Consensus 40 ~~~G~v~~wG~n~~GqLG~g~~~~-----------------~~~~p~~v~~l~~v~~va~G--~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 40 TVLGNVLVCGNGDVGQLGLGEDIL-----------------ERKRLSPVAGIPDAVDISAG--GMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp CCCEEEEEEEECTTSTTCSCSSCC-----------------EEEEEEECCSCSSEEEEEEC--SSEEEEEETTSCEEEEE
T ss_pred cCCCcEEEEeCCCCCCCCCCCCCc-----------------cCcCCeEccCCCCceEEeeC--CCeEEEEeCCCeEEEeE
Q ss_pred CCCC------------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC------------CCCceeEEecccC
Q 005913 450 TKLN------------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM------------DRIQPLRIMAGHL 505 (670)
Q Consensus 450 ~~~~------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~------------~~~~~~~~~~~~~ 505 (670)
.... ...-..-.....|..|+.. ..+.+.-..||.|+.|-. ....+.-......
T Consensus 101 ~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~ 178 (423)
T 3mvd_K 101 CNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEG 178 (423)
T ss_dssp CCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTT
T ss_pred CCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCC
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----------------------cEEEEEecCCCCeEEEEEcCCCCEE
Q 005913 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------------------ECVRIFIGHRSMILSLAMSPDGRYM 562 (670)
Q Consensus 506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----------------------~~~~~~~~h~~~I~~l~~sp~g~~l 562 (670)
..|..|+. -....++-+.+|.|+.|-.... .+..........|..++.. ....+
T Consensus 179 ~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~ 255 (423)
T 3mvd_K 179 TVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT-NYCTF 255 (423)
T ss_dssp CCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE-TTEEE
T ss_pred CcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC-CcEEE
Q ss_pred EEEECCCeEEEE-----------eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc
Q 005913 563 ASGDEDGTIMMW-----------DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631 (670)
Q Consensus 563 ~sg~~dg~I~iw-----------Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 631 (670)
+.-..+|.|+.| +................|..++.. ..+.+.-..||.|..|=.......-.-....
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~ 333 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCS
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccc
Q ss_pred CCcccccccccCCCCCCeEE-----EEEecCCcEEEEeeCC
Q 005913 632 GTNRLRSLKTLPTKSTPVYS-----LQFSRRNLLFAAGALS 667 (670)
Q Consensus 632 ~~~~~~~~~~~~~~~~~V~~-----l~fs~~~~~La~gs~d 667 (670)
....+..+..+...-..|.+ ++.+.+|.+++.|..+
T Consensus 334 ~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 334 VVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred cccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.14 E-value=6e+02 Score=24.97 Aligned_cols=233 Identities=9% Similarity=0.046 Sum_probs=125.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (670)
Q Consensus 361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s 440 (670)
|+..++++.+.+|.|+--.+....... ..-..+.. ...+..+......+.|+..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~------------------------~~~~~lke-~D~l~~~~~~~t~d~ll~fT 57 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASN------------------------GQDFAMKD-TDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTT------------------------TCCCCCCT-TCCEEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcC------------------------ccccccCC-CCEEEEEEEECCCCEEEEEE
Confidence 566778889999999876654210000 00001112 23344444444556677777
Q ss_pred CCCeEEEEeC---CC------Ccee---EEeeCCCccEeEEEEec---CCCEEEEEECCCcEEEEECCCC------ceeE
Q 005913 441 ADTTIRLWST---KL------NANL---VCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRI------QPLR 499 (670)
Q Consensus 441 ~Dg~I~lwd~---~~------~~~~---~~~~~h~~~V~~l~~sp---~g~~l~s~s~dg~v~lwd~~~~------~~~~ 499 (670)
..|.++-+.. .. +..+ ..+. ....|..+...+ ++.+++.++.+|.++...+... .-+.
T Consensus 58 ~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ 136 (323)
T 1wp5_A 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLT 136 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEE
T ss_pred CCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceE
Confidence 7887665543 21 1111 1122 223455443333 2668999999999999987422 1122
Q ss_pred E--ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEEe-cCCCCeEEEEEcCCCC-EEEEEECC
Q 005913 500 I--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGR-YMASGDED 568 (670)
Q Consensus 500 ~--~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~-~h~~~I~~l~~sp~g~-~l~sg~~d 568 (670)
. +... ..+..+........++..+.+|.+..+.... .+-++.+. .....|.++..-+++. .|++.+..
T Consensus 137 ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~ 215 (323)
T 1wp5_A 137 GINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQR 215 (323)
T ss_dssp CSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETT
T ss_pred EEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECC
Confidence 1 2222 4455555545566788888899888887632 12222222 1234566665544455 78888999
Q ss_pred CeEEEEeCCC-------CeeeEEee---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913 569 GTIMMWDLAS-------GRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (670)
Q Consensus 569 g~I~iwDl~~-------~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~ 620 (670)
|..+..++.. ++-+..+. .....+..+....++..++..+..|.+....+..
T Consensus 216 G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 216 GAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 9988887643 11122221 2222454333323345566777788777666654
No 397
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.61 E-value=67 Score=25.22 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.3
Q ss_pred HHHHHHHhcCchHHHHHH
Q 005913 9 FVATYLKKKGFSEAENAL 26 (670)
Q Consensus 9 ~v~~yl~~~~~~~~e~~~ 26 (670)
-|-+||++.||.+.|...
T Consensus 26 ~VadWLkk~g~~~cd~lv 43 (90)
T 2eap_A 26 SLADYFKKLNYKDCEKAV 43 (90)
T ss_dssp THHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHH
Confidence 377999999999988665
No 398
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.36 E-value=3.4e+02 Score=21.89 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEE
Q 005913 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594 (670)
Q Consensus 516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~s 594 (670)
++.+.+.-..||.+.+|+...+..+..-.... +.-..+.+..+|.+++... ++.+ +|.-.+.
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~--------------- 85 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTV--------------- 85 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCC---------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCc---------------
Q ss_pred EEEcCCCCEEEEEECCCcEEEEe
Q 005913 595 LAYSCEGSLLASGSADCTVKLWD 617 (670)
Q Consensus 595 l~~s~~g~~l~sgs~Dg~I~iwd 617 (670)
.+.+.+.++--.||.+.+|+
T Consensus 86 ---~~~~~~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 86 ---GQEGDYVLILQINGQAVVYG 105 (113)
T ss_dssp ---CSSSCCEEEECTTSCEEEEC
T ss_pred ---CCCCCEEEEEcCCceEEEec
Done!