Query 005914
Match_columns 670
No_of_seqs 98 out of 107
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 56.8 44 0.0032 27.0 10.3 66 499-564 12-102 (107)
2 d2ap3a1 a.24.27.1 (A:12-196) H 51.0 51 0.0037 25.6 16.8 22 333-354 21-42 (185)
3 d2efka1 a.238.1.4 (A:10-288) C 46.3 90 0.0065 27.1 16.3 43 249-291 7-49 (279)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 44.3 73 0.0053 25.5 10.1 34 336-369 67-100 (107)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 35.0 1.2E+02 0.0085 25.2 9.9 8 579-586 137-144 (144)
6 d1f5na1 a.114.1.1 (A:284-583) 28.7 1.8E+02 0.013 25.4 11.2 11 406-416 286-296 (300)
7 d1ux5a_ a.207.1.1 (A:) Bni1 {B 27.5 71 0.0052 30.9 8.1 126 43-181 242-367 (411)
8 d1lrza1 a.2.7.4 (A:245-309) Me 26.5 1.3E+02 0.0093 23.0 8.1 48 338-385 7-60 (65)
9 d1s35a2 a.7.1.1 (A:1169-1273) 24.0 1.4E+02 0.01 22.5 9.0 61 332-392 31-102 (105)
10 d1seta1 a.2.7.1 (A:1-110) Sery 22.0 1.8E+02 0.013 23.0 8.8 87 307-394 7-96 (110)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=56.84 E-value=44 Score=26.95 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHh-------------------------hHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005914 499 ELKNKQSFMRDKIKILESSLNRANIEKAA-------------------------SAKEVNHRTKLMMEMVMQLATQRELI 553 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~-------------------------tlKeae~Rak~aE~lV~KL~~ErdrL 553 (670)
.|.+++..+.+.+..|+..+..+.-.-++ ...++..|.++++.-+..|.+....+
T Consensus 12 ~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l 91 (107)
T d1fxka_ 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544333322 25566667777666666666666666
Q ss_pred HHHHhhhHHhh
Q 005914 554 QKQVYSLTSEN 564 (670)
Q Consensus 554 edQL~s~keen 564 (670)
+.++..+..++
T Consensus 92 ~~~l~~~~~~l 102 (107)
T d1fxka_ 92 MKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 2
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=51.03 E-value=51 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 005914 333 NSEVLTMKEKVKSLEEQLKESE 354 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~ 354 (670)
...+..+.+++..++.++....
T Consensus 21 ~~~~~~~~~k~~~~e~~~~~~~ 42 (185)
T d2ap3a1 21 EEPIKTVGKKIAELDEKKKKLT 42 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554433
No 3
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.25 E-value=90 Score=27.08 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhh
Q 005914 249 HHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ 291 (670)
Q Consensus 249 ~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq 291 (670)
.++++...++|+-..-+-+|--=-+.-+.-|...++.+.++..
T Consensus 7 ~~~~~g~~~~~~~~~~~~eRa~iE~~Yak~L~kL~~~~~~~~~ 49 (279)
T d2efka1 7 RHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRP 49 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4567777888888877777765555566666666666555533
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.35 E-value=73 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH
Q 005914 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE 369 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~ 369 (670)
..+|.+++..++..++..+.|+.....++++...
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555555444444333
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=35.05 E-value=1.2e+02 Score=25.21 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=4.3
Q ss_pred CceecccC
Q 005914 579 SATMYNAG 586 (670)
Q Consensus 579 ~~tm~~~g 586 (670)
.++.||+|
T Consensus 137 kL~py~~~ 144 (144)
T d1gs9a_ 137 RLAVYQAG 144 (144)
T ss_dssp HHHHSSCC
T ss_pred HhhCccCC
Confidence 34556655
No 6
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.68 E-value=1.8e+02 Score=25.36 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=4.5
Q ss_pred hHHHHHHhhhh
Q 005914 406 NLELSEEINFL 416 (670)
Q Consensus 406 NdELerelkvL 416 (670)
...+.+++..|
T Consensus 286 ~~~l~~ei~~L 296 (300)
T d1f5na1 286 SRIMKNEIQDL 296 (300)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 7
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.54 E-value=71 Score=30.93 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=77.7
Q ss_pred hhhhhheecccccchhhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhh
Q 005914 43 MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122 (670)
Q Consensus 43 ~~~lt~vel~la~~SEKl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~ 122 (670)
.+.|+++- |+=-..=|..=||.++.++.....|+-.+..+- .+|++|-.+|+ +-+.++|.+|.+-+..++.+
T Consensus 242 L~sL~kL~-d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el-----~~v~~a~~~~~--~~l~~~~~~L~~~l~~i~~~ 313 (411)
T d1ux5a_ 242 LSTLQRLT-FIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERS 313 (411)
T ss_dssp GGGGGGSS-SCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhh-hccCCCCCeeHHHHHHHHHHHhCcHhhccHHHH-----HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 45555542 222222344556777777777766665544332 34566666552 34778888998888888888
Q ss_pred hhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 005914 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (670)
Q Consensus 123 I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (670)
+..+.....+-.+.+..|.. .+..=+..++..+..++..+.++... |..+..+|
T Consensus 314 ~~~~~~~~~~~~~~~d~f~~--~~~~fl~~~~~~~~~l~~~~~~~~~~---~~~~~~yf 367 (411)
T d1ux5a_ 314 VEIGNLSDSSKFHPLDKVLI--KTLPVLPEARKKGDLLEDEVKLTIME---FESLMHTY 367 (411)
T ss_dssp HHHSTTTCTTSSCTTCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHT
T ss_pred HHhhcccccccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 87655543333333444542 13777888888888888888887766 55666665
No 8
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=26.48 E-value=1.3e+02 Score=22.95 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005914 338 TMKEKVKSLEEQLKESEIRLQ------NANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~------~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
.|+.+...|+.++...+..|. .+..++...+.++.+.++||...++-+
T Consensus 7 ~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 7 ELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543 233333334556666666666555443
No 9
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.05 E-value=1.4e+02 Score=22.49 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-----------HHHHHhHHHHHHHHHHHHHhhhhhH
Q 005914 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-----------QEQLNEMDNFIESLKESLYGAESRA 392 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-----------E~EVaaLerrIelLKE~l~rAEsRa 392 (670)
.-+.|..|.+|.+.++.++.....++.......+.. ...+..+..+-+.|.+.+..-..|+
T Consensus 31 dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L 102 (105)
T d1s35a2 31 SLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLL 102 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999998877655444322 4455566666666666555544443
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=21.99 E-value=1.8e+02 Score=23.00 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHhhHhhhHHHHHhHHHHHHHHHH
Q 005914 307 LKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL-QNANACFQTSQEQLNEMDNFIESLKE 383 (670)
Q Consensus 307 l~sKL~~~~eqL~~k--~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL-~~A~aklEesE~EVaaLerrIelLKE 383 (670)
|+...+...+.|..| +..++.+-.- +.+.+.++.++..|-.+......+. .......++..+++.++...|..++.
T Consensus 7 ir~n~e~v~~~l~~R~~~~~ld~i~~l-d~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~ 85 (110)
T d1seta1 7 LRQEPEVFHRAIREKGVALDLEALLAL-DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE 85 (110)
T ss_dssp HHHCHHHHHHHHHHTTCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHH
Q 005914 384 SLYGAESRAES 394 (670)
Q Consensus 384 ~l~rAEsRa~t 394 (670)
++...++++..
T Consensus 86 ~~~~~~~~l~~ 96 (110)
T d1seta1 86 ALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Done!