Query 005921
Match_columns 669
No_of_seqs 255 out of 1262
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 15:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1091 Ypt/Rab-specific GTPas 100.0 7E-80 1.5E-84 668.4 16.7 464 1-663 152-625 (625)
2 KOG4567 GTPase-activating prot 100.0 5.9E-32 1.3E-36 279.9 13.8 168 84-284 182-363 (370)
3 KOG1092 Ypt/Rab-specific GTPas 99.9 1.4E-25 3.1E-30 239.5 12.8 151 104-289 327-481 (484)
4 KOG1093 Predicted protein kina 99.8 1.4E-18 3.1E-23 191.3 12.2 181 80-315 414-606 (725)
5 PF00566 RabGAP-TBC: Rab-GTPas 99.7 2.1E-17 4.6E-22 158.8 11.3 134 80-249 70-214 (214)
6 COG5210 GTPase-activating prot 99.7 9.3E-17 2E-21 177.6 16.1 138 81-253 283-431 (496)
7 KOG2058 Ypt/Rab GTPase activat 99.7 9.2E-17 2E-21 175.1 14.6 150 80-265 223-383 (436)
8 smart00164 TBC Domain in Tre-2 99.7 1.6E-16 3.4E-21 152.9 11.7 115 80-207 72-198 (199)
9 KOG2223 Uncharacterized conser 99.6 4.2E-15 9E-20 160.2 13.7 164 78-277 378-551 (586)
10 KOG2224 Uncharacterized conser 99.5 2.1E-14 4.5E-19 154.6 10.3 171 88-285 536-733 (781)
11 KOG2197 Ypt/Rab-specific GTPas 99.5 3.7E-14 8.1E-19 157.4 11.2 175 80-289 263-449 (488)
12 KOG4436 Predicted GTPase activ 99.5 7.5E-14 1.6E-18 158.6 13.4 156 76-266 643-808 (948)
13 KOG2222 Uncharacterized conser 99.3 5.5E-12 1.2E-16 137.4 7.3 170 76-280 240-417 (848)
14 KOG1102 Rab6 GTPase activator 99.2 4.2E-11 9.1E-16 130.3 7.5 152 78-266 208-369 (397)
15 KOG3636 Uncharacterized conser 99.2 1E-10 2.3E-15 127.1 9.8 161 99-301 123-288 (669)
16 KOG4347 GTPase-activating prot 99.0 2.3E-09 4.9E-14 121.0 13.5 154 75-265 262-425 (671)
17 KOG2595 Predicted GTPase activ 99.0 1.8E-09 4E-14 114.6 10.3 164 83-283 131-302 (395)
18 KOG2221 PDZ-domain interacting 98.1 1.4E-06 3.1E-11 88.7 2.6 90 80-182 168-267 (267)
19 KOG4436 Predicted GTPase activ 97.4 0.00037 7.9E-09 81.4 8.6 167 79-281 259-440 (948)
20 PF14961 BROMI: Broad-minded p 93.8 0.25 5.4E-06 61.0 9.5 122 139-284 1156-1280(1296)
21 KOG2801 Probable Rab-GAPs [Int 85.2 4.3 9.3E-05 44.1 8.9 108 150-282 181-294 (559)
22 KOG2224 Uncharacterized conser 78.8 0.72 1.6E-05 51.9 0.4 29 92-120 568-600 (781)
23 KOG4567 GTPase-activating prot 62.5 2 4.4E-05 46.9 -0.7 17 1-17 194-210 (370)
24 KOG1648 Uncharacterized conser 60.1 1.3 2.8E-05 50.7 -2.7 146 92-277 648-798 (813)
No 1
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-80 Score=668.38 Aligned_cols=464 Identities=49% Similarity=0.734 Sum_probs=391.3
Q ss_pred CcchhhhHHHHHhHhHHHHHHhhhhhhhcccccCCCCCccCCcccccccchhhhccccccccccCCccccccCCcCCHHH
Q 005921 1 MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEI 80 (669)
Q Consensus 1 mhellapllyvl~~d~~~l~~v~~~ye~~~~~~fdg~~f~~~~~~~~~~~~~~~~~~~d~~~~~g~~~k~~sldeldp~~ 80 (669)
||||||||+||||+|.+.|.|+++. .||.++|+|.+++|+|+|.|+.+- .+++
T Consensus 152 MHElLAPl~fVl~~D~q~l~h~se~-------~~~~l~f~E~d~iy~~~y~k~d~d--------------------n~~l 204 (625)
T KOG1091|consen 152 MHELLAPLLFVLHVDNQALLHVSES-------LFDKLGFEERDVIYNFLYLKTDLD--------------------NTEL 204 (625)
T ss_pred hhhhhhhhhhheehhHHHHHHHHHh-------hhhhcCcchhhhhhhHHHHhhhcc--------------------chhH
Confidence 9999999999999999999999998 899999999999999999988521 3889
Q ss_pred HHHHHHhhhhccchhHHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhc
Q 005921 81 QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVAD 160 (669)
Q Consensus 81 q~lv~L~~AYg~e~elg~VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~D 160 (669)
+..|.+.++||++.+.++++...++|+|||++|..+|.. ++++++++..++++|..+|
T Consensus 205 qs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 205 QSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred HHHHHhhhccccccCcceecCcccCCcCcccchhhhccc----------------------chhHHHHhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999963 4567888888999999999
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHH-HHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHH
Q 005921 161 SSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWD-EIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVS 239 (669)
Q Consensus 161 PeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD-~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVA 239 (669)
+.||.||.++||+|++|++||+|+||+|||||.++|.||| ++|.+. |++.|+.||+||
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~---------------------pr~~Lv~~m~Vs 321 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS---------------------PRGILVACMFVS 321 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC---------------------chHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 666654 567899999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCCCCeeeeccCCCCCCCC
Q 005921 240 MMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESIS 319 (669)
Q Consensus 240 MLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A~~L~~~~lda~~ssps~~~~~~~~~~~s~~~R~~~~~~~~~s 319 (669)
||+++|+.||..++ ..||++|+|||.++|++++|++|+.|+. +|.++...++|.+++ +.+
T Consensus 322 mLL~IRd~Llss~~-~tcL~~Lm~yP~~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~ 381 (625)
T KOG1091|consen 322 MLLYIRDSLLSSEY-QTCLQYLMNYPEIIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFS 381 (625)
T ss_pred HHHHHHHHHHHhcc-hhHHHHHhcCCCcCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---ccc
Confidence 99999999999998 6799999999999999999999999998 566666668898876 677
Q ss_pred CCCCCCCCCCCchhhHHHHhhHHHHhhhccCCCCchhh-hhhhhhhhhccccccccCCCCcccCCCcccCC-cchhhhhH
Q 005921 320 PRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQ-KKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLL 397 (669)
Q Consensus 320 p~~p~~~~~~syweek~r~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~s~~~~~~~~~~~~~~~-~~~~~~~~ 397 (669)
+.+|+...|.+||+.|||+++++.+++......+.++. |+.|+. +|+ .|+++|||+ |+...| ++++|.++
T Consensus 382 ~~s~~~isp~~~w~~k~r~~~~~nse~~~~~~sps~~~k~~~~~~-~~~--~r~~~D~S~-----~~~~~k~~~~~R~~~ 453 (625)
T KOG1091|consen 382 DLSPVGISPCSYWEGKWRVLPRANSEESSMKISPSPIIKKKPVLQ-MKL--ARLTIDPSR-----GSSEAKLSSSPRVLL 453 (625)
T ss_pred ccccccCChhhhcccccCCCccccccccccccCCCcccccCcHHH-HHH--HHhhcCCcc-----ccccccCCcchhhhh
Confidence 88899999999999999999999988876555444444 899997 454 499999999 665555 88999999
Q ss_pred HHHHhhhCCcccccccCccccccccCCCchhhhhhhccccccccccCCCcccccCCCCCCCCcccccCCCCCCCCCCCCC
Q 005921 398 EDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNE 477 (669)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 477 (669)
+++.++|+. |.+|...+|
T Consensus 454 ~~~~~~l~t-----------------------------------------------------------p~~~d~~~~--- 471 (625)
T KOG1091|consen 454 LDLKEQLST-----------------------------------------------------------PLSPDEDAN--- 471 (625)
T ss_pred cccccccCC-----------------------------------------------------------CCCcchhhh---
Confidence 998888651 233322222
Q ss_pred CccccccccC-CCCccccccCCCCCCC---CCCCCCCCCCCCCccCCCCCcccccccchhhcccccCceeeeecCCCCcc
Q 005921 478 NDSEKSSVAS-NSSVDENDRQSHTMPE---SPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAG 553 (669)
Q Consensus 478 ~~s~~~s~~s-~~~~~~~~~~~~~~~~---~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~q~~~k~~r~~~~ 553 (669)
+.+.|.+ +.|.-..|..++++.. +.|++|+.+++++ ....+-++|+|+|+|||+||+|||..+
T Consensus 472 ---~~s~v~~~q~s~lq~~l~~kd~~~~~~~~~l~i~~~~~~~----------~~~~~~~~k~~~~~~q~~~~l~~~l~~ 538 (625)
T KOG1091|consen 472 ---EASTVSSIQPSKLQEDLSTKDQVTSQVNGPLEISRTLDGK----------SVLITKEDKLLSGLFQRLRKLGRTLSA 538 (625)
T ss_pred ---hhhhhhhcchHHHHhhhcccchhhhhcCCcccccccCCcc----------hhhhHHHHHhhhHHHHHHHHhCchhcc
Confidence 2333333 6677777777766554 7999999887661 111233889999999999999999988
Q ss_pred ccccccCCcccccccccccccccCCCCCCCCCCCCCCCCCC-CCCcccchhHHHHHHhhhHHHHHHHHHHHHHhhcccCC
Q 005921 554 EETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVIESVLQQEHGQ 632 (669)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~tl~~~g~smle~i~vie~~fq~~~~~ 632 (669)
|||++. +-.|++..+ .+++..|++.+.|++|+||+|++||++||+||||.+++
T Consensus 539 ~etk~~--------------------------~~~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p~~ 592 (625)
T KOG1091|consen 539 EETKKL--------------------------NTGCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEPIE 592 (625)
T ss_pred cccccC--------------------------CCCCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCccc
Confidence 888222 122333322 23347789999999999999999999999999999986
Q ss_pred CC--cccccccccccccchhhHHHHHHHHHHHh
Q 005921 633 LG--SRENFSKNVLVGKGQATAVTALKELRKIS 663 (669)
Q Consensus 633 ~~--~~~~~~~~~~~~~~q~~a~~al~elrkis 663 (669)
+. ..+|+++|++|++||+||+.||+||||+|
T Consensus 593 ~~~~~~d~l~~~~~~~~g~~ta~~~~~~~~~~~ 625 (625)
T KOG1091|consen 593 VPAGLSDNLSGNNLVENGQPTAEPALRELRKSS 625 (625)
T ss_pred ccccccCCCCccchhhcCCCCCchhHHhhhccC
Confidence 65 56999999999999999999999999986
No 2
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=5.9e-32 Score=279.90 Aligned_cols=168 Identities=26% Similarity=0.506 Sum_probs=152.3
Q ss_pred HHHhhhhccchhHHHhhcc--------------CCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHH
Q 005921 84 VQLSDAYGAEGELGIVLSE--------------KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (669)
Q Consensus 84 v~L~~AYg~e~elg~VLs~--------------~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~ 149 (669)
..|++..||-|||..+|.| .+.|+|||+||+.||..++ |+|..+.+ .+..||+..|
T Consensus 182 AKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseir------Dnf~k~LD-dS~~GI~~~M--- 251 (370)
T KOG4567|consen 182 AKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIR------DNFIKTLD-DSVGGIHFLM--- 251 (370)
T ss_pred hhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHH------HHHHHhcc-ccccchHHHH---
Confidence 4567778888898876543 3679999999999999875 99999986 7888987666
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCc
Q 005921 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 229 (669)
Q Consensus 150 ~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr 229 (669)
.+|..+|+.+|.+||.||++.+|.|++|+|||+.|||++|||+++|++|||.+|++.. |
T Consensus 252 sr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~---------------------r 310 (370)
T KOG4567|consen 252 SRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ---------------------R 310 (370)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh---------------------h
Confidence 7899999999999999999999999999999999999999999999999999999875 3
Q ss_pred hhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q 005921 230 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALA 284 (669)
Q Consensus 230 ~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A~~L~~~~ 284 (669)
++|+++||+|||+..|+.||+.|| +.||++||+||+ .|+.+++..|.+|+...
T Consensus 311 fd~Ll~iCcsmlil~Re~il~~DF-~~nmkLLQ~yp~-tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 311 FDFLLYICCSMLILVRERILEGDF-TVNMKLLQNYPT-TDISKMLAVADSLRDKK 363 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHhcCCC-CCHHHHHHHHHHHHhcc
Confidence 489999999999999999999998 999999999997 99999999999999643
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-25 Score=239.54 Aligned_cols=151 Identities=25% Similarity=0.403 Sum_probs=136.6
Q ss_pred CchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHH
Q 005921 104 FMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLR 183 (669)
Q Consensus 104 ~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfr 183 (669)
-+|+|||||+.+|+.+++ |+|..- ++||...+ ..|..|++.+|+.||+||++.||+-..|||||+.
T Consensus 327 ~iEADsyWClskLLD~IQ------DNYtfa-----QpGIq~kV---~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmN 392 (484)
T KOG1092|consen 327 DIEADAYWCLSKLLDGIQ------DNYTFA-----QPGIQRKV---KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMN 392 (484)
T ss_pred hhhhhHHHHHHHHHHHhh------hhhhhc-----ChhHHHHH---HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHH
Confidence 459999999999999986 788764 56876544 7899999999999999999999999999999999
Q ss_pred HhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhC
Q 005921 184 VLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLN 263 (669)
Q Consensus 184 lLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn 263 (669)
|||.||||+..++||||.+++++..+ ..|++|||+|.|+..+++|++.|| .+.|.+|||
T Consensus 393 cLLmRE~pl~~~iRlWDTY~aE~dgf--------------------~~FhvYvcAAFL~kW~~eL~e~DF-Q~~ilfLQn 451 (484)
T KOG1092|consen 393 CLLMREFPLRCTIRLWDTYLAEPDGF--------------------NEFHVYVCAAFLLKWSSELMENDF-QELILFLQN 451 (484)
T ss_pred HHHHhhccchhHHHHHHHhhcCccch--------------------HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhc
Confidence 99999999999999999999998643 379999999999999999999997 999999999
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHhhcCC
Q 005921 264 FPVN----INLKKIIGKTKSLQALALDANL 289 (669)
Q Consensus 264 ~P~~----iDV~kLI~~A~~L~~~~lda~~ 289 (669)
+|+. .+|.-|+..|+.++..+.+++.
T Consensus 452 lPT~~W~d~eIellLseA~~~k~~f~da~~ 481 (484)
T KOG1092|consen 452 LPTHNWSDREIELLLSEAFRLKSVFSDAPN 481 (484)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHccchh
Confidence 9974 6899999999999998877764
No 4
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=191.32 Aligned_cols=181 Identities=20% Similarity=0.374 Sum_probs=150.5
Q ss_pred HHHHHHHhhhhc-------cchhHHH-----hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHH
Q 005921 80 IQTIVQLSDAYG-------AEGELGI-----VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIE 147 (669)
Q Consensus 80 ~q~lv~L~~AYg-------~e~elg~-----VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe 147 (669)
.+.+=++++|+. +-+++-- ++.-.-.|+-||-||..++-+.+ ..||..+. ++ ++.+
T Consensus 414 ~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc-----q~fflkdn---s~----vike 481 (725)
T KOG1093|consen 414 HRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC-----QHFFLKDN---SN----VIKE 481 (725)
T ss_pred HHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH-----HHHHhhcC---ch----hHHH
Confidence 345566777775 3344322 22334459999999999998765 36777643 22 2345
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCC
Q 005921 148 ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (669)
Q Consensus 148 ~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~s 227 (669)
....|+++++.+||+|++||..+|+.|++||++||+++|+.+||++..+.+||.+|..+.+
T Consensus 482 yLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~S------------------- 542 (725)
T KOG1093|consen 482 YLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSS------------------- 542 (725)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCc-------------------
Confidence 5678999999999999999999999999999999999999999999999999999998874
Q ss_pred CchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCCCCee
Q 005921 228 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMV 307 (669)
Q Consensus 228 pr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A~~L~~~~lda~~ssps~~~~~~~~~~~s~~ 307 (669)
|.++++|||+.+.|+.||++.| .+|+.++.+.| ++|++.+|+....|++. +| +|++
T Consensus 543 ----Fplmi~vAil~~lR~~LLa~nf-ne~illf~d~p-dldId~~Ires~~l~e~-------tP-----------~sit 598 (725)
T KOG1093|consen 543 ----FPLMIGVAILIQLRDPLLACNF-NECILLFSDLP-DLDIDVCIRESYHLMET-------TP-----------KSIT 598 (725)
T ss_pred ----cHHHHHHHHHHHhhhhhhhCCc-hhheeeeccCC-cccHHHHHHHHhhhhhC-------CC-----------CCCC
Confidence 7889999999999999999998 99999999999 59999999999999984 66 7789
Q ss_pred eeccCCCC
Q 005921 308 VRGSSLPS 315 (669)
Q Consensus 308 ~R~~~~~~ 315 (669)
+|+|..|-
T Consensus 599 ~rqha~~~ 606 (725)
T KOG1093|consen 599 PRQHANPF 606 (725)
T ss_pred hHHhcCCC
Confidence 99998663
No 5
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.72 E-value=2.1e-17 Score=158.77 Aligned_cols=134 Identities=23% Similarity=0.462 Sum_probs=102.5
Q ss_pred HHHHHHHhhhhc-------cchhHHHhh---c-cCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 80 IQTIVQLSDAYG-------AEGELGIVL---S-EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 80 ~q~lv~L~~AYg-------~e~elg~VL---s-~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
.+.+.+++.+|. +.+||..+. . ....|++|||||+++|.. .+.++|..+. .| +...
T Consensus 70 ~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~-----~~~~~~~~~~-----~~---~~~~ 136 (214)
T PF00566_consen 70 QKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNY-----YLPDFFQPNF-----KG---LQKI 136 (214)
T ss_dssp HHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTH-----HGGGGTSTTH-----HH---HHHH
T ss_pred HHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcc-----cccccccccc-----cc---cchh
Confidence 345555555554 567766543 3 455799999999999932 2457787653 12 2334
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
+..+..+|+.++|+||+||.+.|+++..|+++|++++|++.+|++.++|||| ++.+|..
T Consensus 137 ~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~-------------------- 195 (214)
T PF00566_consen 137 LKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYK-------------------- 195 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTT--------------------
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCC--------------------
Confidence 5678999999999999999999999999999999999999999999999999 6667653
Q ss_pred chhHHHHHHHHHHHHhhhhhc
Q 005921 229 RGALIAAMAVSMMLYIRSSLL 249 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL 249 (669)
-+++++|+||+...|++||
T Consensus 196 --~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 196 --FFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp --HHHHHHHHHHHHHTHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHhC
Confidence 2488999999999999986
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.71 E-value=9.3e-17 Score=177.59 Aligned_cols=138 Identities=25% Similarity=0.435 Sum_probs=114.3
Q ss_pred HHHHHHhhhhc-------cchhHHHhhc---cCCc-hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHH
Q 005921 81 QTIVQLSDAYG-------AEGELGIVLS---EKFM-EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (669)
Q Consensus 81 q~lv~L~~AYg-------~e~elg~VLs---~~~~-EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~ 149 (669)
+.|.+++.||. |.|+|.+++. ..+. |++|||||++||... .+..+|..++ .|++ ..+
T Consensus 283 ~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~----~l~~~~~~~~-----~G~~---~~~ 350 (496)
T COG5210 283 ENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNY----GLPGYFLKNL-----SGLH---RDL 350 (496)
T ss_pred HHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----cchhhcccCC-----cHHH---HHH
Confidence 34555556655 6788887654 3566 999999999999942 3678888875 3543 334
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCc
Q 005921 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 229 (669)
Q Consensus 150 ~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr 229 (669)
..+..+++..+|+||+||...|+...+|++|||+|+|.++||++.++||||.+|++|..
T Consensus 351 ~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~--------------------- 409 (496)
T COG5210 351 KVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS--------------------- 409 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH---------------------
Confidence 67888999999999999999999999999999999999999999999999999999963
Q ss_pred hhHHHHHHHHHHHHhhhhhccCCC
Q 005921 230 GALIAAMAVSMMLYIRSSLLATEN 253 (669)
Q Consensus 230 ~~fIlyIaVAMLl~lR~qLL~~Df 253 (669)
++..+++|++...+.+|+..+.
T Consensus 410 --~l~~~~~~~l~~~~~~l~~~~~ 431 (496)
T COG5210 410 --MLFQLALAILKLLRDKLLKLDS 431 (496)
T ss_pred --HHHHHHHHHHHhhhhhhhccCc
Confidence 5667888999999999998876
No 7
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.2e-17 Score=175.10 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=126.6
Q ss_pred HHHHHHHhhhhc-------cchhHHHh---hccCCc-hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 80 IQTIVQLSDAYG-------AEGELGIV---LSEKFM-EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 80 ~q~lv~L~~AYg-------~e~elg~V---Ls~~~~-EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
++.|-+++-||+ |+|+|.++ |...+. |++|||||+.+...+. ..+|..++. |++.+
T Consensus 223 ~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~l-----p~Yyt~nL~-g~qvD------- 289 (436)
T KOG2058|consen 223 RQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYL-----PRYYTPNLI-GSQVD------- 289 (436)
T ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-----hhhcCchhh-hhhcc-------
Confidence 567777777776 67887754 455566 9999999999999874 368888773 44433
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
...|..+|+..+|+|+.||..++++-.+|++.||+|+|....|.+.+|||||++|.+|..
T Consensus 290 Q~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk-------------------- 349 (436)
T KOG2058|consen 290 QKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK-------------------- 349 (436)
T ss_pred HHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH--------------------
Confidence 256899999999999999999999999999999999999999999999999999999974
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCC
Q 005921 229 RGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 265 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P 265 (669)
+++.+|+|++...+++||.++...+.++.|..+.
T Consensus 350 ---vlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~ 383 (436)
T KOG2058|consen 350 ---VLFRVALAILKKHEEEILKEDSSKEILRVLPDLT 383 (436)
T ss_pred ---HHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 5777999999999999999988777777776665
No 8
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.69 E-value=1.6e-16 Score=152.95 Aligned_cols=115 Identities=28% Similarity=0.484 Sum_probs=90.7
Q ss_pred HHHHHHHhhhh-------ccchhHHHhhc---cCC-chHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 80 IQTIVQLSDAY-------GAEGELGIVLS---EKF-MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 80 ~q~lv~L~~AY-------g~e~elg~VLs---~~~-~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
.+.|.+++.+| |+.|||..++. ..+ .|++|||||++||.... ..+|..++ .| +...
T Consensus 72 ~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-----~~~~~~~~-----~~---~~~~ 138 (199)
T smart00164 72 QESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-----PNFYLPDM-----SG---LQLD 138 (199)
T ss_pred HHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-----cccCCCCh-----HH---HHHH
Confidence 34455555555 57788776533 345 59999999999999764 24464432 12 2344
Q ss_pred HHHHHHHHHHhcHHHHHHHHH-cCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVE-LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDS 207 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~e-lgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~ 207 (669)
+..|..+|+.++|+||+||.+ +|+++.+|+++||++||+++||++.++||||.||++|.
T Consensus 139 ~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 139 LLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 577899999999999999996 99999999999999999999999999999999999984
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.61 E-value=4.2e-15 Score=160.21 Aligned_cols=164 Identities=19% Similarity=0.312 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhhhcc-------chh---HHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHH
Q 005921 78 PEIQTIVQLSDAYGA-------EGE---LGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIE 147 (669)
Q Consensus 78 p~~q~lv~L~~AYg~-------e~e---lg~VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe 147 (669)
|--+.|..|+-||.+ -++ |++||...|.++|||.||.+|+++.. . .-||..+. + -+..
T Consensus 378 Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~---q-~Aff~~d~------s--~m~~ 445 (586)
T KOG2223|consen 378 PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPC---Q-QAFFRVDH------S--SMLS 445 (586)
T ss_pred chHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHH---H-HHHHhcCc------H--HHHH
Confidence 446788999999984 344 55689999999999999999999864 2 35787653 1 1233
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCC
Q 005921 148 ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (669)
Q Consensus 148 ~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~s 227 (669)
.+..|...|+...|+||.||.++.+.|.+|.+.|+.+||+..+|++...||||+++-+|.
T Consensus 446 yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge-------------------- 505 (586)
T KOG2223|consen 446 YFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE-------------------- 505 (586)
T ss_pred HHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch--------------------
Confidence 456688999999999999999999999999999999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHH
Q 005921 228 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKT 277 (669)
Q Consensus 228 pr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A 277 (669)
.|++..++++|...++.||.+|| ..|.++|..+|..+-.+++...-
T Consensus 506 ---eFlfr~~lgIlklyepkLl~mDf-~~~~qfLtklp~dL~~eelF~~i 551 (586)
T KOG2223|consen 506 ---EFLFRTALGILKLYEPKLLVMDF-IHVAQFLTKLPEDLTPEELFMHI 551 (586)
T ss_pred ---HHHHHHHHHHHHHccchHhhhhH-HHHHHHHHhCcccCCHHHHHHHH
Confidence 47888999999999999999998 89999999999877777665443
No 10
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=154.57 Aligned_cols=171 Identities=21% Similarity=0.314 Sum_probs=120.6
Q ss_pred hhhccchhHHHhhccC----CchHHHHHHHHHHHhcccCCCC-------------------Cc-ccccCCCCCCcccChH
Q 005921 88 DAYGAEGELGIVLSEK----FMEHDAYCMFDALMVGSQGSVS-------------------MA-DFFAHSHADGSLTCLL 143 (669)
Q Consensus 88 ~AYg~e~elg~VLs~~----~~EaDAFw~F~~LM~~i~~~Y~-------------------m~-DfFs~s~~~gS~~GI~ 143 (669)
+|.|+.++|.++|.+- ..|.++||||+.||.++...++ |+ -||..++-+. .
T Consensus 536 ~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~---d-- 610 (781)
T KOG2224|consen 536 PAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDE---D-- 610 (781)
T ss_pred ccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcch---h--
Confidence 4445677787776653 4466777777777775421100 11 2454443210 1
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHcCCC--cchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 005921 144 PVIEASSAMYHLLSVADSSLHSHLVELGVE--PQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSG 221 (669)
Q Consensus 144 plIe~~~~f~~LLk~~DPeLy~HL~elgIe--PqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~ 221 (669)
+-+.+..+..||+...|..|+||+.+|-+ ..+||.||+++.|.||||-..++|||+.-|+.... +
T Consensus 611 -md~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~t----------d-- 677 (781)
T KOG2224|consen 611 -MDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLT----------D-- 677 (781)
T ss_pred -hhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhH----------H--
Confidence 12234678899999999999999998855 35899999999999999999999999999998753 1
Q ss_pred ccccCCCchhHHHHHHHHHHHHhhhhhccCCCHH-HHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Q 005921 222 FGILSSPRGALIAAMAVSMMLYIRSSLLATENAT-TCLQRLLNFPVNINLKKIIGKTKSLQALAL 285 (669)
Q Consensus 222 FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~s-e~LqlLqn~P~~iDV~kLI~~A~~L~~~~l 285 (669)
-|++|+|+||+-...+..++..... +.|.-+-++....|-+-++++|..|...+.
T Consensus 678 ---------yfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qfr 733 (781)
T KOG2224|consen 678 ---------YFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFR 733 (781)
T ss_pred ---------HHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHh
Confidence 4899999999999999888765422 223233334445788899999988665443
No 11
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.52 E-value=3.7e-14 Score=157.43 Aligned_cols=175 Identities=18% Similarity=0.262 Sum_probs=138.7
Q ss_pred HHHHHHHhhhhc-------cchhHHHhhccCCc----hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 80 IQTIVQLSDAYG-------AEGELGIVLSEKFM----EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 80 ~q~lv~L~~AYg-------~e~elg~VLs~~~~----EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
...+..++-+|+ +.++|.+++++... |++|||||+.+|.+++ .+|..+. .|+.. +
T Consensus 263 ~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~------~nF~~d~-----~~~~~---Q 328 (488)
T KOG2197|consen 263 LARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLR------HNFRIDQ-----SGMQT---Q 328 (488)
T ss_pred HHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHh------hcCcccc-----ccHHH---H
Confidence 445555555554 67888899888643 8999999999999864 4666543 24432 3
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
...+..+++..||.||.||+.++....+|++||+.+.|.|||..+++++||+++|+.....
T Consensus 329 l~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~------------------- 389 (488)
T KOG2197|consen 329 LAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSP------------------- 389 (488)
T ss_pred hhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccc-------------------
Confidence 3556799999999999999999999999999999999999999999999999999987642
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCC-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 005921 229 RGALIAAMAVSMMLYIRSSLLATEN-ATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANL 289 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL~~Df-~se~LqlLqn~P~~iDV~kLI~~A~~L~~~~lda~~ 289 (669)
.|++|++.|||...+..|+.... +.+.+..+-....+.|+..++..|..+.........
T Consensus 390 --~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~ 449 (488)
T KOG2197|consen 390 --HFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEE 449 (488)
T ss_pred --hHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhccc
Confidence 69999999999998888887643 245555566666678999999999888876555444
No 12
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.52 E-value=7.5e-14 Score=158.62 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHhhhhc-------cchhHHH---hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHH
Q 005921 76 LDPEIQTIVQLSDAYG-------AEGELGI---VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPV 145 (669)
Q Consensus 76 ldp~~q~lv~L~~AYg-------~e~elg~---VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~pl 145 (669)
|.+..-+++++++||. ++++++. ||..+|.|+.||-|+..||...+ |+--|.+++. .+
T Consensus 643 lg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~----~r~qy~pdm~--------~l 710 (948)
T KOG4436|consen 643 LGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRG----MRKQYRPDMK--------KL 710 (948)
T ss_pred ccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHh----hHhhhchHHH--------HH
Confidence 5666789999999994 6777765 47789999999999999998763 5667776642 12
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCcccc
Q 005921 146 IEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGIL 225 (669)
Q Consensus 146 Ie~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl 225 (669)
-.++..+.++++.+.+.||+||++..|.|.+||.+||+++|+..||+.-|-||+|.||..|..
T Consensus 711 q~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~te----------------- 773 (948)
T KOG4436|consen 711 QIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTE----------------- 773 (948)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccc-----------------
Confidence 224466889999999999999999999999999999999999999999999999999999863
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCC
Q 005921 226 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 266 (669)
Q Consensus 226 ~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~ 266 (669)
.|+.+++++|--.+..|+++|.+++++.++++.-+
T Consensus 774 ------vifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p 808 (948)
T KOG4436|consen 774 ------VIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLP 808 (948)
T ss_pred ------hhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhh
Confidence 46779999999999999999999999999999654
No 13
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.27 E-value=5.5e-12 Score=137.39 Aligned_cols=170 Identities=20% Similarity=0.344 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHhhhhccchhHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHH
Q 005921 76 LDPEIQTIVQLSDAYGAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAM 152 (669)
Q Consensus 76 ldp~~q~lv~L~~AYg~e~elg~V---Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f 152 (669)
|.+..+-+.-|.+-.||+++||.+ |...+-|+.||||+..++..+.| ..||+.+.. ||.. .-...
T Consensus 240 lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp----~nfysqtll-----giqa---derv~ 307 (848)
T KOG2222|consen 240 LRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILP----ANFYSQTLL-----GIQA---DERVM 307 (848)
T ss_pred HHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcC----chhhhhhHh-----ccch---hHHHH
Confidence 444455566677788899998854 55667789999999999999864 578887653 5422 11345
Q ss_pred HHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhH
Q 005921 153 YHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGAL 232 (669)
Q Consensus 153 ~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~f 232 (669)
.+|++.+-|.|-..|.++.|+-.+..+.||++||+..|.+..++||||.||.+|.- -
T Consensus 308 ~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i-----------------------~ 364 (848)
T KOG2222|consen 308 HHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGI-----------------------N 364 (848)
T ss_pred HHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcc-----------------------h
Confidence 78999999999999999999999999999999999999999999999999999852 2
Q ss_pred HHHHHHHHHHHhhhhhccC----CCHHHHHHHHhCCCC-CCCHHHHHHHHHHH
Q 005921 233 IAAMAVSMMLYIRSSLLAT----ENATTCLQRLLNFPV-NINLKKIIGKTKSL 280 (669)
Q Consensus 233 IlyIaVAMLl~lR~qLL~~----Df~se~LqlLqn~P~-~iDV~kLI~~A~~L 280 (669)
|+.+.++||......|... +...++...|..+|. ..||+++++.|..+
T Consensus 365 ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~ 417 (848)
T KOG2222|consen 365 IFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEF 417 (848)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhc
Confidence 4557888988877776553 444677888999996 47999999988754
No 14
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.16 E-value=4.2e-11 Score=130.29 Aligned_cols=152 Identities=20% Similarity=0.295 Sum_probs=125.1
Q ss_pred HHHHHHHHHhhhhc-------cchhHHH---hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHH
Q 005921 78 PEIQTIVQLSDAYG-------AEGELGI---VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIE 147 (669)
Q Consensus 78 p~~q~lv~L~~AYg-------~e~elg~---VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe 147 (669)
..++.+.++++||. +.++|+. .+...+.|++|||+++++|... . .++|..++ .|+..
T Consensus 208 ~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~----~-~~~~~~~~-----~~l~~--- 274 (397)
T KOG1102|consen 208 VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNY----G-LDLLSPGF-----SGLQR--- 274 (397)
T ss_pred cccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhcc----c-hhcccccC-----Cchhh---
Confidence 34566777777776 4455553 4667788999999999999964 3 46665443 35432
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCC
Q 005921 148 ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (669)
Q Consensus 148 ~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~s 227 (669)
.+..+.++++..-|.++.|+...+++..+|+.+|++++|+..||++.++||||.+|..|.
T Consensus 275 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~-------------------- 334 (397)
T KOG1102|consen 275 SFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGV-------------------- 334 (397)
T ss_pred hHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhch--------------------
Confidence 336788999999999999999999999999999999999999999999999999999984
Q ss_pred CchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCC
Q 005921 228 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 266 (669)
Q Consensus 228 pr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~ 266 (669)
..+..++++++.+..+.++..++ +..++.|.+.+.
T Consensus 335 ---~i~~~~~~~l~~~~~~~~~~~~~-e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 335 ---SILFRFSLALLKHKADDLLDLDF-ESLLSYLRVDLP 369 (397)
T ss_pred ---HHHHHHHHHHhhhhhHHHhhccH-HHHHHHHhcccH
Confidence 35778999999999999999996 899999988654
No 15
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.15 E-value=1e-10 Score=127.11 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=126.0
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhh
Q 005921 99 VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFG 178 (669)
Q Consensus 99 VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa 178 (669)
++..+..-.|.|.||.++|.. |++.. -+..|- -+..|.-||+.+||+|.+||..+.|.|.+|+
T Consensus 123 l~~L~lprsd~fN~F~ai~~k----------YIPkd--crpkg~-----~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~ 185 (669)
T KOG3636|consen 123 LLLLNLPRSDEFNVFFAITTK----------YIPKD--CRPKGQ-----IFHLFRLLLQYHDPELCNHLDTKKITPDMYT 185 (669)
T ss_pred HHHhcCCcchhhhhhHhhhhc----------ccCCC--CCCCCc-----cchHHHHHHHhcCHHHhhhhhccccCchHHH
Confidence 345577789999999999985 22221 112231 1245778999999999999999999999999
Q ss_pred hHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccC--CCHHH
Q 005921 179 LRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT--ENATT 256 (669)
Q Consensus 179 ~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~--Df~se 256 (669)
+.||-.||+...+.+.+.-|||.+|..++.+ |++|+++-+|+.-|++||.. +.-++
T Consensus 186 lnWf~sLFas~~Stev~~a~WdlY~qqaDPF----------------------~vffLaliiLiNake~ILq~~sdsKEe 243 (669)
T KOG3636|consen 186 LNWFASLFASSMSTEVCHALWDLYIQQADPF----------------------LVFFLALIILINAKEEILQVKSDSKEE 243 (669)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCce----------------------ehHHHHHHHhcccHHHHhhhccccHHH
Confidence 9999999999999999999999999998753 67888999999999999975 44578
Q ss_pred HHHHHhCCCCC---CCHHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 005921 257 CLQRLLNFPVN---INLKKIIGKTKSLQALALDANLSSSSPPFSGVYN 301 (669)
Q Consensus 257 ~LqlLqn~P~~---iDV~kLI~~A~~L~~~~lda~~ssps~~~~~~~~ 301 (669)
++++|.+.|.. .||..+...|..+. ..+|.|.-......+||
T Consensus 244 ~ikfLenmp~~L~~eDvpDffsLAqyY~---~KTP~sfrkD~~~~lfG 288 (669)
T KOG3636|consen 244 AIKFLENMPAQLSVEDVPDFFSLAQYYS---DKTPESFRKDFHYILFG 288 (669)
T ss_pred HHHHHHcCchhcccccchhHHHHHHHHh---hcChHHhhhhhhHhhhc
Confidence 99999999964 57777777775443 34555555555556666
No 16
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.02 E-value=2.3e-09 Score=120.99 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=127.1
Q ss_pred cCCHHHHHHHHHhhhhcc-------chhHHHhhc---cCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHH
Q 005921 75 ELDPEIQTIVQLSDAYGA-------EGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLP 144 (669)
Q Consensus 75 eldp~~q~lv~L~~AYg~-------e~elg~VLs---~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~p 144 (669)
+.++.+..+.+++.||.. +|-|.+|.+ ....|++||||++++....- .++|+.+.. |.
T Consensus 262 Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~i-----p~yys~~vv-----Gt-- 329 (671)
T KOG4347|consen 262 QSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYI-----PDYYSKTVV-----GT-- 329 (671)
T ss_pred hCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhc-----ccccchhhh-----hh--
Confidence 356678899999999984 455666644 45669999999999999763 588887653 21
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccc
Q 005921 145 VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGI 224 (669)
Q Consensus 145 lIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrI 224 (669)
++ ....|..+++..-|.||.|+..+| .-.+..+.||++||-..+|++..+||-|++|.+|..
T Consensus 330 li-DQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~r---------------- 391 (671)
T KOG4347|consen 330 LI-DQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPR---------------- 391 (671)
T ss_pred HH-HHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccH----------------
Confidence 12 224589999999999999999999 677999999999999999999999999999999974
Q ss_pred cCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCC
Q 005921 225 LSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 265 (669)
Q Consensus 225 l~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P 265 (669)
.|+-|++||+..+.+.|+.+..-.++|..|.||-
T Consensus 392 -------vlFqiaLail~~N~~~il~~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 392 -------VLFQIALAILKQNAERILSATDDGEAMMVLGNYF 425 (671)
T ss_pred -------HHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence 5778999999999999998765578888888874
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=98.98 E-value=1.8e-09 Score=114.63 Aligned_cols=164 Identities=17% Similarity=0.250 Sum_probs=129.4
Q ss_pred HHHHhhhhc---cchhHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHH
Q 005921 83 IVQLSDAYG---AEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLL 156 (669)
Q Consensus 83 lv~L~~AYg---~e~elg~V---Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LL 156 (669)
|+.+...|- |-||..++ +..-+-|.+|+-+.+.|-. +.++||-.++++ + ..++...+..+|
T Consensus 131 I~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~-----~~lrdfM~~Tld-~-------t~~qL~~i~~iI 197 (395)
T KOG2595|consen 131 ILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELST-----LHLRDFMLPTLD-F-------TVRQLRLISPII 197 (395)
T ss_pred HHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHH-----HHHHHHHHHHHH-H-------HHHHHHHHHHHH
Confidence 445555554 67887765 4556669999988888774 346677666663 1 234556789999
Q ss_pred HHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccC-ChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHH
Q 005921 157 SVADSSLHSHLVELGVEPQYFGLRWLRVLFGREF-SLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAA 235 (669)
Q Consensus 157 k~~DPeLy~HL~elgIePqlFa~RWfrlLFsREF-pLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIly 235 (669)
+..||+||+.|+.-.+.+ +|++.|++++|++.+ ++..++|++|++++...- +.+|
T Consensus 198 k~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl-----------------------~piy 253 (395)
T KOG2595|consen 198 KEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPL-----------------------LPIY 253 (395)
T ss_pred hhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcc-----------------------hhHH
Confidence 999999999999999996 999999999999999 499999999999998752 5789
Q ss_pred HHHHHHHHhhhhhccCCCHHH-HHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 005921 236 MAVSMMLYIRSSLLATENATT-CLQRLLNFPVNINLKKIIGKTKSLQAL 283 (669)
Q Consensus 236 IaVAMLl~lR~qLL~~Df~se-~LqlLqn~P~~iDV~kLI~~A~~L~~~ 283 (669)
+|+++++..|+.|++++-... .-.+|..+|..+.++.+|+.+..+...
T Consensus 254 v~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~ 302 (395)
T KOG2595|consen 254 VYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITR 302 (395)
T ss_pred HHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhc
Confidence 999999999999999865222 234467789889999999999887763
No 18
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.4e-06 Score=88.67 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhc----------cchhHHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHH
Q 005921 80 IQTIVQLSDAYG----------AEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (669)
Q Consensus 80 ~q~lv~L~~AYg----------~e~elg~VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~ 149 (669)
.+.++++++||. +++.++++|.+++.+.||||||+.+.... +.++|+..+. .+...-
T Consensus 168 kqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqiceky-----lqgy~~sgle--------aiq~dg 234 (267)
T KOG2221|consen 168 KQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKY-----LQGYYSSGLE--------AIQNDG 234 (267)
T ss_pred hHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHH-----cccccccchh--------hhhccc
Confidence 588999999998 24558889999999999999999999975 3578887542 111122
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHH
Q 005921 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWL 182 (669)
Q Consensus 150 ~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWf 182 (669)
..+..||++.+|.-|.||...+++|.+|.+-||
T Consensus 235 ~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 235 GILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 458899999999999999999999999999997
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=97.44 E-value=0.00037 Score=81.37 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=123.5
Q ss_pred HHHHHHHHhhhhcc-c------hh---HHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 79 EIQTIVQLSDAYGA-E------GE---LGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 79 ~~q~lv~L~~AYg~-e------~e---lg~VLs~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
.+..+++..++|.. + +| |--++...+.++.+|+.++.+|.. |+++..|.+.+.+ .| ..
T Consensus 259 ~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~----~rl~~l~kpe~~~---l~-----~~ 326 (948)
T KOG4436|consen 259 AQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL----YRLRELSKPEMEP---LG-----LC 326 (948)
T ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh----hcccccCCcccch---hH-----HH
Confidence 46788999999985 2 22 223467789999999999999996 6788899887641 11 12
Q ss_pred HHHHHHHHHHhcH-HHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCC
Q 005921 149 SSAMYHLLSVADS-SLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (669)
Q Consensus 149 ~~~f~~LLk~~DP-eLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~s 227 (669)
+-.+.......-| .|+.|+.+.+++...|+--||++.|.-.||+...-++-|.+.++|-
T Consensus 327 ~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egl-------------------- 386 (948)
T KOG4436|consen 327 MFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGL-------------------- 386 (948)
T ss_pred HHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccH--------------------
Confidence 2356677788888 9999999999999999999999999999999999999998888774
Q ss_pred CchhHHHHHHHHHH-HHhhhhhccCCCHHHHHHHHhCC-CC--CCCHHHHHHHHHHHH
Q 005921 228 PRGALIAAMAVSMM-LYIRSSLLATENATTCLQRLLNF-PV--NINLKKIIGKTKSLQ 281 (669)
Q Consensus 228 pr~~fIlyIaVAML-l~lR~qLL~~Df~se~LqlLqn~-P~--~iDV~kLI~~A~~L~ 281 (669)
.+++.+.+|++ ...+-.++..|+ .+.++.+++- +. ..+++++...|...+
T Consensus 387 ---lk~fr~~ia~~~~~~d~~~~s~D~-EG~~~~~qr~~s~~vggtp~k~~t~a~q~q 440 (948)
T KOG4436|consen 387 ---LKRFRDSIAYLHQLRDIELESLDM-EGMLSYFQRNRSNTVGGTPDKLRTAAWQVQ 440 (948)
T ss_pred ---HHHHhhhHHHHHHHhhhhhhccCc-cccccchhhccccccCCCCchHHHHHHHHh
Confidence 24457788888 444456677776 6766666642 21 145556665554433
No 20
>PF14961 BROMI: Broad-minded protein
Probab=93.80 E-value=0.25 Score=61.00 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=91.4
Q ss_pred ccChHHHHHH-HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCC
Q 005921 139 LTCLLPVIEA-SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDD 217 (669)
Q Consensus 139 ~~GI~plIe~-~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~ 217 (669)
..||+|+.-. +..++.+|+.--|.+|.-|.--|..|...+.||+.-+|=--+++..+..--=.-+..|.
T Consensus 1156 ~s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~---------- 1225 (1296)
T PF14961_consen 1156 ESGIHPVYFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP---------- 1225 (1296)
T ss_pred hcCCCchhhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc----------
Confidence 4688876432 35689999999999999999999999999999999999999998886644333333333
Q ss_pred CCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHH
Q 005921 218 AGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV--NINLKKIIGKTKSLQALA 284 (669)
Q Consensus 218 ~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~--~iDV~kLI~~A~~L~~~~ 284 (669)
+|-+|+|||++++...+||..-- +.-|+.+++--. ...+..-+.....|-+.+
T Consensus 1226 -------------dyqvY~~VailkHlq~~ilq~~q-~q~L~~flke~~l~gF~~~~~~~yM~~Le~~y 1280 (1296)
T PF14961_consen 1226 -------------DYQVYICVAILKHLQPEILQHTQ-TQDLQVFLKEEALRGFRVSDYLEYMENLEQRY 1280 (1296)
T ss_pred -------------cceeehhHHHHHHhhHHHHHhhh-hchHHHHhhhccccceeHHhHHHHHHHHHHHh
Confidence 35679999999999999998643 454666665332 256666666666665543
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=4.3 Score=44.06 Aligned_cols=108 Identities=15% Similarity=0.306 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCC-cchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 150 SAMYHLLSVADSSLHSHLVELGVE-PQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 150 ~~f~~LLk~~DPeLy~HL~elgIe-PqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
..|-.++.++...-|+.+....-+ .+.|+ .|-+-||+ |+|+-.-.|++|+++.+|+.
T Consensus 181 mtfgdlvnkycqaahklmvavsedvlqvya-dwqrwlfg-elplcyfarvfdvflvegyk-------------------- 238 (559)
T KOG2801|consen 181 MTFGDLVNKYCQAAHKLMVAVSEDVLQVYA-DWQRWLFG-ELPLCYFARVFDVFLVEGYK-------------------- 238 (559)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHhc-cchHHHHHHHhhheeecchH--------------------
Confidence 345577787777777777554333 23444 68887876 78999999999999999974
Q ss_pred chhHHHHHHHHHHHHhhh----hhccCCCH-HHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 005921 229 RGALIAAMAVSMMLYIRS----SLLATENA-TTCLQRLLNFPVNINLKKIIGKTKSLQA 282 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~----qLL~~Df~-se~LqlLqn~P~~iDV~kLI~~A~~L~~ 282 (669)
.+..+++|+|...-+ +-|++|.. .++-.+...+...+.+++|+++|..++-
T Consensus 239 ---vlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 239 ---VLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred ---HHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 567789999876543 44555441 2333444555555889999999988764
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=78.83 E-value=0.72 Score=51.86 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=21.8
Q ss_pred cchhHHHhhc----cCCchHHHHHHHHHHHhcc
Q 005921 92 AEGELGIVLS----EKFMEHDAYCMFDALMVGS 120 (669)
Q Consensus 92 ~e~elg~VLs----~~~~EaDAFw~F~~LM~~i 120 (669)
..++|.++.. .-..|.|+||||+.||...
T Consensus 568 lmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 568 LMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 3467776544 4456899999999999964
No 23
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.51 E-value=2 Score=46.92 Aligned_cols=17 Identities=47% Similarity=0.872 Sum_probs=15.5
Q ss_pred CcchhhhHHHHHhHhHH
Q 005921 1 MHELLAPLLYVLHVDVE 17 (669)
Q Consensus 1 mhellapllyvl~~d~~ 17 (669)
|+||||||-||+..|-+
T Consensus 194 MNEIlaPiYYVfa~Dpd 210 (370)
T KOG4567|consen 194 MNEILAPIYYVFANDPD 210 (370)
T ss_pred hHHHhhhhheeeccCCc
Confidence 99999999999998864
No 24
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=60.08 E-value=1.3 Score=50.69 Aligned_cols=146 Identities=19% Similarity=0.316 Sum_probs=83.0
Q ss_pred cchhHHHhhccCCc----hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHH
Q 005921 92 AEGELGIVLSEKFM----EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHL 167 (669)
Q Consensus 92 ~e~elg~VLs~~~~----EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL 167 (669)
+.++|-+++.|... |+-+--||.-+|-.-++ -|.+-+ +-..|+.. .++++..|| |-.-+
T Consensus 648 ~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~------~~~q~~--~~~~~l~~--------~r~~~v~~~-l~s~i 710 (813)
T KOG1648|consen 648 YTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRG------KFPQRP--GMSKCLLN--------LRLIQVVDP-LISDI 710 (813)
T ss_pred cccchhhccCCcCCChhhcccccCCCcHHHHHhcc------cCCCCC--Cccccccc--------ccchhhhcc-hhcch
Confidence 45667777765432 33344588888876654 232221 11223321 125555566 22222
Q ss_pred HHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhh
Q 005921 168 VELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSS 247 (669)
Q Consensus 168 ~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVAMLl~lR~q 247 (669)
. .-+-..||||..-|.|+++.+....+|.++|+..... +. .+|-++++.|. ...-+.
T Consensus 711 d----~~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~----------------~~~~i~~g~~~-~~~~~~ 767 (813)
T KOG1648|consen 711 D----YAQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLR--IT----------------DDFAIFFGLAT-TNYHDV 767 (813)
T ss_pred h----hhhhcceeeeccCcccccCCCCcceeeEeeccccccc--cC----------------cchhhhhhhHH-HhhHHH
Confidence 1 1244569999999999999999999999999987531 11 13555666666 333333
Q ss_pred hccCCC-HHHHHHHHhCCCCCCCHHHHHHHH
Q 005921 248 LLATEN-ATTCLQRLLNFPVNINLKKIIGKT 277 (669)
Q Consensus 248 LL~~Df-~se~LqlLqn~P~~iDV~kLI~~A 277 (669)
++..+| .+.+++++.-..+..|+..++.-|
T Consensus 768 ~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~ 798 (813)
T KOG1648|consen 768 LITNNFDYTDMIKFFNEMAERHDCSRLLSSA 798 (813)
T ss_pred HhhcccchHHHHHHHHHHHhhhhhHHHHhcC
Confidence 443333 256666665555445555554433
Done!