Query 005921
Match_columns 669
No_of_seqs 255 out of 1262
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 99.9 9.6E-28 3.3E-32 255.8 16.0 167 106-287 175-385 (396)
2 2qfz_A TBC1 domain family memb 99.9 4.3E-27 1.5E-31 244.6 16.8 150 105-288 187-340 (345)
3 2qq8_A TBC1 domain family memb 99.9 8.3E-27 2.9E-31 242.5 14.6 167 79-281 133-309 (334)
4 3qye_A TBC1 domain family memb 99.9 3.7E-26 1.3E-30 236.0 18.8 169 78-281 127-308 (331)
5 3qwl_A TBC1 domain family memb 99.9 4.7E-26 1.6E-30 235.4 16.2 148 100-288 143-290 (294)
6 3hzj_A Rabgap1L, RAB GTPase-ac 99.9 2.8E-26 9.5E-31 235.2 13.3 167 79-281 94-275 (310)
7 4hl4_A TBC1 domain family memb 99.9 2.1E-25 7.2E-30 227.6 15.6 166 80-283 110-288 (292)
8 1fkm_A Protein (GYP1P), ORF YO 16.5 50 0.0017 35.0 1.7 15 1-15 133-147 (396)
9 2qfz_A TBC1 domain family memb 14.1 61 0.0021 33.2 1.6 14 1-14 150-163 (345)
10 2cwy_A Hypothetical protein TT 12.5 2.2E+02 0.0077 24.4 4.5 49 232-281 41-92 (94)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.95 E-value=9.6e-28 Score=255.75 Aligned_cols=167 Identities=19% Similarity=0.341 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHh
Q 005921 106 EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 185 (669)
Q Consensus 106 EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlL 185 (669)
|+||||||++||..++ ++|..++ .|+ ...+..|..+|+.+||+||+||.++||+|.+|++|||+||
T Consensus 175 E~daF~~f~~lm~~~~------~~f~~~~-----~~i---~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L 240 (396)
T 1fkm_A 175 EADTFWCLTKLLEQIT------DNYIHGQ-----PGI---LRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL 240 (396)
T ss_dssp HHHHHHHHHHHHGGGG------GGSSTTC-----HHH---HHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH------HHHhhcH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999764 7887653 243 3455789999999999999999999999999999999999
Q ss_pred hcccCChhHHHHHHHHHhhcCCC-----CCCCCC-CC-------CCCCCc---------------------------ccc
Q 005921 186 FGREFSLGDLLIIWDEIFASDSS-----KVNKDT-ED-------DAGSGF---------------------------GIL 225 (669)
Q Consensus 186 FsREFpLedVLRIWD~IFAeg~s-----i~~k~~-e~-------~~es~F---------------------------rIl 225 (669)
|+|+||++.++||||.||++|.. ..+... .+ ++...| .+.
T Consensus 241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T 1fkm_A 241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR 320 (396)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence 99999999999999999998810 000000 00 000000 000
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHhhc
Q 005921 226 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDA 287 (669)
Q Consensus 226 ~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~----iDV~kLI~~A~~L~~~~lda 287 (669)
.++...|++|||+|||+.+|++||++|| +++|++|+++|.. .|++.||..|..++..+.++
T Consensus 321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~df-~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~ 385 (396)
T 1fkm_A 321 QSSLNEFHVFVCAAFLIKWSDQLMEMDF-QETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDA 385 (396)
T ss_dssp --CHHHHHHHHHHHHHHHTHHHHTTCCH-HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 0122479999999999999999999997 8999999999974 58999999999999887544
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.94 E-value=4.3e-27 Score=244.56 Aligned_cols=150 Identities=21% Similarity=0.336 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHH
Q 005921 105 MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRV 184 (669)
Q Consensus 105 ~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrl 184 (669)
.|+||||||++||..++ ++|..++ .|+ ...+..|..+|+.+||+||+||.++|++|.+|++|||+|
T Consensus 187 ~E~daF~~f~~lm~~~~------~~y~~~~-----~~i---~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~ 252 (345)
T 2qfz_A 187 IEADTYWCMSKLLDGIQ------DNYTFAQ-----PGI---QMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN 252 (345)
T ss_dssp HHHHHHHHHHHHHHTSG------GGSSTTC-----HHH---HHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccc------cccccCc-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 49999999999999763 7887653 243 345578999999999999999999999999999999999
Q ss_pred hhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCC
Q 005921 185 LFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF 264 (669)
Q Consensus 185 LFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~ 264 (669)
||+|+||++.++||||.+|++|..+ ..|++|+|+|||+..|++||.+..++++|++|+++
T Consensus 253 lF~~~~p~~~~lrlWD~~l~~g~~~--------------------~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 253 LLMREVPLRCTIRLWDTYQSEPDGF--------------------SHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp TTTTTSCHHHHHHHHHHHTTSTTTT--------------------TTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHcccCCHHHHHHHHHHHHhCCCCh--------------------hHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 9999999999999999999998642 13789999999999999999643349999999999
Q ss_pred CCC----CCHHHHHHHHHHHHHHHhhcC
Q 005921 265 PVN----INLKKIIGKTKSLQALALDAN 288 (669)
Q Consensus 265 P~~----iDV~kLI~~A~~L~~~~lda~ 288 (669)
|.. .|++.||+.|..|+....+++
T Consensus 313 p~~~~~~~di~~ll~~A~~l~~~~~~~~ 340 (345)
T 2qfz_A 313 PTAHWDDEDISLLLAEAYRLKFAFADAP 340 (345)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 975 379999999999999765443
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=242.54 Aligned_cols=167 Identities=16% Similarity=0.294 Sum_probs=142.5
Q ss_pred HHHHHHHHhhhh-------ccchhHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 79 EIQTIVQLSDAY-------GAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 79 ~~q~lv~L~~AY-------g~e~elg~V---Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
.++.|.+++.|| ||.|||.++ |...+.|+||||||++||.... +.++|..+. .|+ ...
T Consensus 133 ~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~----~~~~~~~~~-----~~~---~~~ 200 (334)
T 2qq8_A 133 YHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPC----QMAFFRVDH-----GLM---LTY 200 (334)
T ss_dssp THHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHH----HHHHHSSCC-----HHH---HHH
T ss_pred hHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh----HHhccCCCh-----HHH---HHH
Confidence 356667777666 577887765 4456789999999999999752 246786543 232 234
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
+..|..+|+.+||+||+||.+.|++|.+|+++||+|||+++||++.++||||.+|++|.
T Consensus 201 ~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~--------------------- 259 (334)
T 2qq8_A 201 FAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE--------------------- 259 (334)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC---------------------
Confidence 56789999999999999999999999999999999999999999999999999999985
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005921 229 RGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~iDV~kLI~~A~~L~ 281 (669)
.|++++|+|||...|+.|+++|+ ++++++|+++|..+|++.|++.|..++
T Consensus 260 --~~l~~valaiL~~~~~~Ll~~d~-~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 260 --EFLFRTALGILKLFEDILTKMDF-IHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp --HHHHHHHHHHHHHTHHHHHTCCH-HHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 47999999999999999999997 899999999999899999999998765
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.94 E-value=3.7e-26 Score=235.99 Aligned_cols=169 Identities=21% Similarity=0.313 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhhhc-------cchhHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHH
Q 005921 78 PEIQTIVQLSDAYG-------AEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIE 147 (669)
Q Consensus 78 p~~q~lv~L~~AYg-------~e~elg~V---Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe 147 (669)
+.++.|.+++.||+ |.|||+++ |...+.|+||||||++||... .++++|.+++ .| +..
T Consensus 127 ~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~----~~~~~~~~~~-----~~---~~~ 194 (331)
T 3qye_A 127 AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDM----GLRKQYRPDM-----II---LQI 194 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTT----CGGGGGSTTC-----HH---HHH
T ss_pred ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CchhcCCCCh-----HH---HHH
Confidence 45666777777664 67887765 445778999999999999863 4678998764 13 334
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCC
Q 005921 148 ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (669)
Q Consensus 148 ~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~s 227 (669)
.+..|..+|+.+||+||+||.+.|++|.+|+++||+|||+++||++.++||||.+|++|.
T Consensus 195 ~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~-------------------- 254 (331)
T 3qye_A 195 QMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT-------------------- 254 (331)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc--------------------
Confidence 456789999999999999999999999999999999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCCC---CHHHHHHHHHHHH
Q 005921 228 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNI---NLKKIIGKTKSLQ 281 (669)
Q Consensus 228 pr~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~i---DV~kLI~~A~~L~ 281 (669)
.+++++|+|||...|+.||+++.+++++++|+++++.+ |++.||+.|..++
T Consensus 255 ---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 255 ---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp ---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 37899999999999999999855699999999965544 7899999997664
No 5
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=235.37 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=130.8
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhh
Q 005921 100 LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGL 179 (669)
Q Consensus 100 Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~~~f~~LLk~~DPeLy~HL~elgIePqlFa~ 179 (669)
|.....|+||||||++||.+++ ++|..++ +|+. ..+.++|+.+||+||+||.+.|+.|.+|+.
T Consensus 143 l~l~~~E~dAFW~f~~Lm~~l~------~~f~~~~-----~gl~------~~l~~LL~~~dP~L~~HL~~~~i~~~~~~~ 205 (294)
T 3qwl_A 143 EEMVEDSVDCYWITRRFVNQLN------TKYRDSL-----PQLP------KAFEQYLNLEDGRLLTHLRMCSAAPKLPYD 205 (294)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHH------TTTTTTG-----GGHH------HHHHHHHHHHCHHHHHHHHHTTCGGGSCHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHH------HhhCCCh-----hHHH------HHHHHHHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3345679999999999999864 7898764 3543 236899999999999999999999988888
Q ss_pred HHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHH
Q 005921 180 RWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQ 259 (669)
Q Consensus 180 RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~spr~~fIlyIaVAMLl~lR~qLL~~Df~se~Lq 259 (669)
|||+|||+++||++.++||||.+|+++. .|+++||+|||..+|++||++++++++++
T Consensus 206 rWfl~lF~~~~p~~~vlRlWD~~~~~~~-----------------------~~l~~valAiL~~~r~~Ll~~~~~~~il~ 262 (294)
T 3qwl_A 206 LWFKRCFAGCLPESSLQRVWDKVVSGSC-----------------------KILVFVAVEILLTFKIKVMALNSAEKITK 262 (294)
T ss_dssp HHHTSTTTTTSCHHHHHHHHHHHHTTCS-----------------------THHHHHHHHHHHHTHHHHHHCCSHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhCCc-----------------------hHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999664 47899999999999999999999788899
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 005921 260 RLLNFPVNINLKKIIGKTKSLQALALDAN 288 (669)
Q Consensus 260 lLqn~P~~iDV~kLI~~A~~L~~~~lda~ 288 (669)
+|+++|. .|++.||.+|..|++...+++
T Consensus 263 ~Lq~lp~-~di~~ll~~A~~l~~~~~~~~ 290 (294)
T 3qwl_A 263 FLENIPQ-DSSDAIVSKAIDLWHKHCGTP 290 (294)
T ss_dssp HHTTCCS-TTHHHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCc-ccHHHHHHHHHHHHHHcCCCC
Confidence 9999996 799999999999999887643
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.8e-26 Score=235.23 Aligned_cols=167 Identities=18% Similarity=0.350 Sum_probs=140.2
Q ss_pred HHHHHHHHhhhh-------ccchhHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHH
Q 005921 79 EIQTIVQLSDAY-------GAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (669)
Q Consensus 79 ~~q~lv~L~~AY-------g~e~elg~V---Ls~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~ 148 (669)
.++.|.+++.|| ||.|||..+ |...+.|+||||||++||.. |.++++|.+++ +++...
T Consensus 94 ~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~----~~~~~~~~~~~--------~~~~~~ 161 (310)
T 3hzj_A 94 GQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD----YGLRDLYRNNF--------EDLHCK 161 (310)
T ss_dssp HHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHT----SCGGGGTHHHH--------HHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhc----ccccccccccH--------HHHHHH
Confidence 456666666666 577887765 44567899999999999985 45778887643 223344
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 149 ~~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFpLedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
+..|..+|+.+||+||+||.+.|++|.+|+++||+|||+++||++.++||||.+|++|.
T Consensus 162 ~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~--------------------- 220 (310)
T 3hzj_A 162 FYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL--------------------- 220 (310)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc---------------------
Confidence 57799999999999999999999999999999999999999999999999999999986
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHhC-CCC----CCCHHHHHHHHHHHH
Q 005921 229 RGALIAAMAVSMMLYIRSSLLATENATTCLQRLLN-FPV----NINLKKIIGKTKSLQ 281 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn-~P~----~iDV~kLI~~A~~L~ 281 (669)
.+++++|+|||...|++||++|+ ++++++|++ +|. ..|++.||+.|..++
T Consensus 221 --~~l~~v~lail~~~~~~Ll~~d~-~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 221 --NIIFHVALALLKTSKEDLLQADF-EGALKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp --THHHHHHHHHHHHTHHHHHTCCH-HHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHhCcccccccccHHHHHHHHHhcC
Confidence 36889999999999999999986 999999974 553 368999999998763
No 7
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.93 E-value=2.1e-25 Score=227.57 Aligned_cols=166 Identities=15% Similarity=0.234 Sum_probs=139.4
Q ss_pred HHHHHHHhhhhc-------cchhHHHhh---ccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccChHHHHHHH
Q 005921 80 IQTIVQLSDAYG-------AEGELGIVL---SEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (669)
Q Consensus 80 ~q~lv~L~~AYg-------~e~elg~VL---s~~~~EaDAFw~F~~LM~~i~~~Y~m~DfFs~s~~~gS~~GI~plIe~~ 149 (669)
++.|.+++.||. |.|||.++. ...+.|+||||||++||... ++++|.+++. |+. ..+
T Consensus 110 ~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~-----l~~~~~~~~~-----~~~---~~~ 176 (292)
T 4hl4_A 110 QEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH-----LRDFMDPTMD-----NTK---HIL 176 (292)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTT-----TTGGGCSSSC-----TTT---GGG
T ss_pred HHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHH-----HHHhcccchH-----HHH---HHH
Confidence 455666776664 778888753 35677999999999999953 5688887753 322 233
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCC-hhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 005921 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFS-LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (669)
Q Consensus 150 ~~f~~LLk~~DPeLy~HL~elgIePqlFa~RWfrlLFsREFp-LedVLRIWD~IFAeg~si~~k~~e~~~es~FrIl~sp 228 (669)
..|..+|+.+||+||+||.+.++. .+|+++||+|||++++| ++.++||||.+|+++.
T Consensus 177 ~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~--------------------- 234 (292)
T 4hl4_A 177 NYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP--------------------- 234 (292)
T ss_dssp GGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT---------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC---------------------
Confidence 568999999999999999999994 69999999999999996 9999999999999986
Q ss_pred chhHHHHHHHHHHHHhhhhhccC--CCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 005921 229 RGALIAAMAVSMMLYIRSSLLAT--ENATTCLQRLLNFPVNINLKKIIGKTKSLQAL 283 (669)
Q Consensus 229 r~~fIlyIaVAMLl~lR~qLL~~--Df~se~LqlLqn~P~~iDV~kLI~~A~~L~~~ 283 (669)
.+++|+|+|||+..|++||++ ++ +.++.+|+++|..+|++.||+.|..|+..
T Consensus 235 --~~~~~v~~ail~~~~~~Ll~~~~d~-~~l~~~l~~lp~~~d~~~li~~A~~l~~~ 288 (292)
T 4hl4_A 235 --LMPIYFAAVIVLYREQEVLDCDCDM-ASVHHLLSQIPQDLPYETLISRAGDLFVQ 288 (292)
T ss_dssp --THHHHHHHHHHHHTHHHHHTSCCST-THHHHHHHSCCSSCCHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 378899999999999999996 55 78889999999889999999999999874
No 8
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=16.48 E-value=50 Score=34.96 Aligned_cols=15 Identities=13% Similarity=0.545 Sum_probs=13.0
Q ss_pred CcchhhhHHHHHhHh
Q 005921 1 MHELLAPLLYVLHVD 15 (669)
Q Consensus 1 mhellapllyvl~~d 15 (669)
||+|+||||+|+..|
T Consensus 133 mn~i~a~ll~v~~~~ 147 (396)
T 1fkm_A 133 INDLVTPFFETFLTE 147 (396)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHh
Confidence 899999999998643
No 9
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=14.13 E-value=61 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=12.6
Q ss_pred CcchhhhHHHHHhH
Q 005921 1 MHELLAPLLYVLHV 14 (669)
Q Consensus 1 mhellapllyvl~~ 14 (669)
||+|+||||+|+..
T Consensus 150 m~~i~a~ll~v~~~ 163 (345)
T 2qfz_A 150 INDLVTPFFVVFIC 163 (345)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHh
Confidence 89999999999864
No 10
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=12.50 E-value=2.2e+02 Score=24.43 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhhccCCCHHHHHHHHhCCCCC---CCHHHHHHHHHHHH
Q 005921 232 LIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN---INLKKIIGKTKSLQ 281 (669)
Q Consensus 232 fIlyIaVAMLl~lR~qLL~~Df~se~LqlLqn~P~~---iDV~kLI~~A~~L~ 281 (669)
=++-+|||+....|... ....+...+..|..+|+. +|+..|+..+..+.
T Consensus 41 GLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~~~~gidv~~L~~~~~~~l 92 (94)
T 2cwy_A 41 GVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPCPLMGLDWRSLLQEARRRL 92 (94)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCSSBTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHh
Confidence 35568899988777665 433356778889999863 99999998876543
Done!