BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005922
(669 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 125 QSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGT 184
+S +++ +P+ VG+IIG+ GE I +Q SG K+Q++ D+ P RSV L G+
Sbjct: 205 RSTTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGG---LPERSVSLTGS 261
Query: 185 PEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIK 244
PE + KA+ +++D+++ G G GQ G+ M IP K GLVIGKGGETIK
Sbjct: 262 PEAVQKAKLMLDDIVSRGRGGPPGQFHDYANGQNGTVQEIM-IPAGKAGLVIGKGGETIK 320
Query: 245 NMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
+Q R G +++I + +T+ ++ ++I G +++ A ++V +++ E
Sbjct: 321 QLQERAG--VKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRER 369
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
GT ++I IP + G++IGK GETIK LQ ++G K+ +D + N + + ++G P +
Sbjct: 296 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNV-DKPLRIIGDPYK 354
Query: 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQ 247
+ +A +++ D+L E + GG G R G + +P + VG+VIG+ GE IK +Q
Sbjct: 355 VQQACEMVMDILRERDQGGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQ 412
Query: 248 ARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296
G RIQ T E+ I G E+ E A +++N+++ R
Sbjct: 413 NDAGVRIQF----KQDDGTGPEKIAHIMGPPERCEHAARIINDLLQSLR 457
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPE 186
+G + +P VGV+IG+SGE IK +Q +G +IQ +D D P + +MG PE
Sbjct: 384 IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD---DGTGPEKIAHIMGPPE 440
Query: 187 QIAKAEQLINDVLAEAES-------------GGSGIVARRLTGQAGSDHFAMKIPNNKVG 233
+ A ++IND+L S G + + G G + IP +K G
Sbjct: 441 RCEHAARIINDLLQSLRSGPPGPPGHGMPPGGRGRGRGQGIWGPPGGE-MTFSIPTHKCG 499
Query: 234 LVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
LVIG+GGE +K + + GA ++ I LPP + I G+ +QIE AKQ + E I
Sbjct: 500 LVIGRGGENVKAINQQRGAFVE-ISRQLPPNGDPNFKLFIIRGSPQQIEHAKQPIEEKIE 558
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 226 KIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLH--LPPGDTSTERTVQIDGTSEQIES 283
++P+ VGL+IG+GGE I +Q +G ++Q+ P LP ER+V + G+ E ++
Sbjct: 214 RVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP------ERSVSLTGSPEAVQK 267
Query: 284 AKQLVNEVISENR 296
AK ++++++S R
Sbjct: 268 AKLMLDDIVSRGR 280
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 29/248 (11%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPV 119
F A +RA QIAA++ + ++ D GF L+ P + +
Sbjct: 75 FADAVQRARQIAAKIGGDAATTVNN----------NTPDFGFGGQKRQLEDGDQPDSKKL 124
Query: 120 SYGGYQSMGT-------------SKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTR 166
+ G S+G+ +++ +P+ VG+IIG+ GE I +Q SG K+Q++
Sbjct: 125 ASQG-DSIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISP 183
Query: 167 DTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMK 226
D+ P RSV L G PE + KA+ +++D+++ G G G +
Sbjct: 184 DSGG---LPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIM 240
Query: 227 IPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQ 286
IP K GLVIGKGGETIK +Q R G +++I + +T+ ++ ++I G +++ A +
Sbjct: 241 IPAGKAGLVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 298
Query: 287 LVNEVISE 294
+V +++ E
Sbjct: 299 MVMDILRE 306
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
GT ++I IP + G++IGK GETIK LQ ++G K+ + +D + N + + ++G P +
Sbjct: 234 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYK 292
Query: 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQ 247
+ +A +++ D+L E + GG G R G + +P + VG+VIG+ GE IK +Q
Sbjct: 293 VQQACEMVMDILRERDQGGFG--DRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQ 350
Query: 248 ARTGARIQVIPLHLPPGD-TSTERTVQIDGTSEQIESAKQLVNEVISENR 296
G RIQ D T E+ I G ++ E A +++N+++ R
Sbjct: 351 NDAGVRIQ-----FKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 395
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPE 186
+G + +P VGV+IG+SGE IK +Q +G +IQ +D D P + +MG P+
Sbjct: 322 VGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD---DGTGPEKIAHIMGPPD 378
Query: 187 QIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSD-------------HFAMKIPNNKVG 233
+ A ++IND+L SG G G IP +K G
Sbjct: 379 RCEHAARIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCG 438
Query: 234 LVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
LVIG+GGE +K + +TGA ++ I LPP + I G+ +QI+ AKQL+ E I
Sbjct: 439 LVIGRGGENVKAINQQTGAFVE-ISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIE 497
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 29/248 (11%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPV 119
F A +RA QIAA++ + ++ D GF L+ P + +
Sbjct: 75 FADAVQRARQIAAKIGGDAATTVNN----------NTPDFGFGGQKRQLEDGDQPDSKKL 124
Query: 120 SYGGYQSMGT-------------SKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTR 166
+ G S+G+ +++ +P+ VG+IIG+ GE I +Q SG K+Q++
Sbjct: 125 ASQG-DSIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISP 183
Query: 167 DTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMK 226
D+ P RSV L G PE + KA+ +++D+++ G G G +
Sbjct: 184 DSGG---LPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIM 240
Query: 227 IPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQ 286
IP K GLVIGKGGETIK +Q R G +++I + +T+ ++ ++I G +++ A +
Sbjct: 241 IPAGKAGLVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 298
Query: 287 LVNEVISE 294
+V +++ E
Sbjct: 299 MVMDILRE 306
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
GT ++I IP + G++IGK GETIK LQ ++G K+ + +D + N + + ++G P +
Sbjct: 234 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYK 292
Query: 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQ 247
+ +A +++ D+L E + GG G R G + +P + VG+VIG+ GE IK +Q
Sbjct: 293 VQQACEMVMDILRERDQGGFG--DRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQ 350
Query: 248 ARTGARIQVIPLHLPPGD-TSTERTVQIDGTSEQIESAKQLVNEVISENR 296
G RIQ D T E+ I G ++ E A +++N+++ R
Sbjct: 351 NDAGVRIQ-----FKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 395
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 135 IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQL 194
+P VGV+IG+SGE IK +Q +G +IQ +D D P + +MG P++ A ++
Sbjct: 330 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARI 386
Query: 195 INDVLAEAESGGSGIVARRLTGQAGSD-------------HFAMKIPNNKVGLVIGKGGE 241
IND+L SG G G IP +K GLVIG+GGE
Sbjct: 387 INDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGE 446
Query: 242 TIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
+K + +TGA ++ I LPP + I G+ +QI+ AKQL+ E I
Sbjct: 447 NVKAINQQTGAFVE-ISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIE 497
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
G IP + G++IG+ GE +K + Q+GA ++++R + + + + G+P+Q
Sbjct: 425 GGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQ 484
Query: 188 IAKAEQLINDVL 199
I A+QLI + +
Sbjct: 485 IDHAKQLIEEKI 496
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 29/241 (12%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPV 119
F A R QIAA++ +S+ P + N + D + G+ ++ P +
Sbjct: 19 FVDALHRVRQIAAKI-DSI------PHLNNSTPLVDPSVYGYG-----VQKRPLDDGVGN 66
Query: 120 SYGG--YQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTR 177
G +Q +++ ++P+ VG IIG+ GE I +Q +SG KIQ+ ++ P R
Sbjct: 67 QLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSG---IPER 123
Query: 178 SVELMGTPEQIAKAEQLINDVLAEAESG---GSGIVARRLTGQAGSDHFAMKIPNNKVGL 234
L GTPE I +A++L+ ++ +G + I + S + IP +KVGL
Sbjct: 124 PCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDI-------DSNSTIQEILIPASKVGL 176
Query: 235 VIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294
VIG+GGETIK +Q RTG ++++ + P T ++ ++I G + +++ A+++V E+I E
Sbjct: 177 VIGRGGETIKQLQERTG--VKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIRE 234
Query: 295 N 295
Sbjct: 235 K 235
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
G S ++ +P VG++IG++GE IK +Q +G +IQ D D SP R+ ++MG P++
Sbjct: 253 GGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGISPERAAQVMGPPDR 309
Query: 188 IAKAEQLINDVLAEA-ESGGSGIVARRLTGQA-----------GSDHFAMKIPNNKVGLV 235
A +I++++ A E G G +A G +P +K GLV
Sbjct: 310 CQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLV 369
Query: 236 IGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292
IGKGGE IK++ ++GA ++ + + PP R I G +QIE A+QL++E +
Sbjct: 370 IGKGGENIKSINQQSGAHVE-LQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV 425
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 121 YGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD----TEADLNSPT 176
+ S T ++I IP +VG++IG+ GETIK LQ ++G K+ + +D T AD P
Sbjct: 155 HNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGAD--KPL 212
Query: 177 RSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVI 236
R + G ++ +A +++ +++ E + V + G + +P VG+VI
Sbjct: 213 R---ITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVI 269
Query: 237 GKGGETIKNMQARTGARIQVIPLHLPPGD-TSTERTVQIDGTSEQIESAKQLVNEVI 292
G+ GE IK +Q G RIQ P D S ER Q+ G ++ + A +++E+I
Sbjct: 270 GRNGEMIKKIQNDAGVRIQ-----FKPDDGISPERAAQVMGPPDRCQHAAHIISELI 321
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 19/244 (7%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGG----FDSAD----KGFSSPPSDLKSI 111
F A +RA QIAA++ + + G GG + D K +S + S
Sbjct: 74 FADAVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPESKKLASQGDSISSQ 133
Query: 112 PAPSAIPVSYGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEAD 171
P P +++ +P+ VG+IIG+ GE I +Q SG K+Q++ D+
Sbjct: 134 LGPIHPP------PRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGG- 186
Query: 172 LNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNK 231
P RSV L G PE + KA+ +++D+++ G G G + IP K
Sbjct: 187 --LPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGK 244
Query: 232 VGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEV 291
GLVIGKGGETIK +Q R G +++I + +T+ ++ ++I G +++ A ++V ++
Sbjct: 245 AGLVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDI 302
Query: 292 ISEN 295
+ E
Sbjct: 303 LRER 306
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPE 186
+G + +P VGV+IG+SGE IK +Q +G +IQ +D D P + +MG P+
Sbjct: 321 IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD---DGTGPEKIAHIMGPPD 377
Query: 187 QIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSD-------------HFAMKIPNNKVG 233
+ A ++IND+L SG G G IP +K G
Sbjct: 378 RCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCG 437
Query: 234 LVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
LVIG+GGE +K + +TGA ++ I LPP + I G+ +QI+ AKQL+ E I
Sbjct: 438 LVIGRGGENVKAINQQTGAFVE-ISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 496
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQ 187
GT ++I IP + G++IGK GETIK LQ ++G K+ + +D + N + + ++G P +
Sbjct: 233 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYK 291
Query: 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQ 247
+ +A +++ D+L E + GG G R G + +P + VG+VIG+ GE IK +Q
Sbjct: 292 VQQACEMVMDILRERDQGGFG--DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQ 349
Query: 248 ARTGARIQVIPLHLPPGD-TSTERTVQIDGTSEQIESAKQLVNEVISENR 296
G RIQ D T E+ I G ++ E A +++N+++ R
Sbjct: 350 NDAGVRIQ-----FKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 394
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 62/290 (21%)
Query: 46 SYNSVPPPA-----------------DEFQDFQAAKRRAEQIAARLCNSVSAEA------ 82
Y++VPPP+ D F+D A +RA QIAA++
Sbjct: 3 DYSTVPPPSSGSAGGGGGGGGGGGVNDAFKD---ALQRARQIAAKIGGDAGTSLNSNDYG 59
Query: 83 ----KRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPVSYGGYQSMGTSKKIEIPNI 138
KRP +E+G D D +P +D P P+ +S+ T ++ ++P+
Sbjct: 60 YGGQKRP-LEDG----DQPDAKKVAPQNDSFGTQLP---PMHQQQSRSVMT-EEYKVPDG 110
Query: 139 RVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDV 198
VG IIG+ GE I +Q +SG KIQ+ D+ P RS L GTPE + A++L++ +
Sbjct: 111 MVGFIIGRGGEQISRIQQESGCKIQIAPDSGG---LPERSCMLTGTPESVQSAKRLLDQI 167
Query: 199 LAEAE-----SGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGAR 253
+ + G G G+ + IP +K GLVIGKGGETIK +Q R G
Sbjct: 168 VEKGRPAPGFHHGDG---------PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG-- 216
Query: 254 IQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE----NRIRN 299
++++ + P +T ++ ++I G +++ AK++V E+I + +RN
Sbjct: 217 VKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRN 266
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 133 IEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAE 192
+ IP VG++IG++GE IK +Q +G +IQ D D +P R ++ G P++ A
Sbjct: 280 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPERIAQITGPPDRCQHAA 336
Query: 193 QLINDVLAEAESGGSGIVARRLTGQA------------GSDHFAMKIPNNKVGLVIGKGG 240
++I D+L ++G G G+ G F +P K GL+IGKGG
Sbjct: 337 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 396
Query: 241 ETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292
ETIK++ ++GARI+ + + PP + I GT +QI+ A+QL+ E I
Sbjct: 397 ETIKSISQQSGARIE-LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 24/171 (14%)
Query: 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD----TEADLNSPTRSVELMGTPE 186
++I IP + G++IGK GETIK LQ ++G K+ + +D T AD + + + G P
Sbjct: 188 QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD-----KPLRITGDPY 242
Query: 187 QIAKAEQLINDVLAEAESGGSGIVAR----RLTGQAGSDHFAMKIPNNKVGLVIGKGGET 242
++ +A++++ +++ + GG V R+ G G D + IP VG+VIG+ GE
Sbjct: 243 KVQQAKEMVLELIRD--QGGFREVRNEYGSRIGGNEGID---VPIPRFAVGIVIGRNGEM 297
Query: 243 IKNMQARTGARIQVIPLHLPPGDTST-ERTVQIDGTSEQIESAKQLVNEVI 292
IK +Q G RIQ P D +T ER QI G ++ + A +++ +++
Sbjct: 298 IKKIQNDAGVRIQ-----FKPDDGTTPERIAQITGPPDRCQHAAEIITDLL 343
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 47/261 (18%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPV 119
F+ A +RA QIAA++ +S D G+ L+ P A V
Sbjct: 27 FKDALQRARQIAAKIGGDAGTS------------LNSNDYGYGGQKRPLEDGDQPDAKKV 74
Query: 120 -----SYGGY-------QSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD 167
S+G Q +++ ++P+ VG IIG+ GE I +Q +SG KIQ+ D
Sbjct: 75 PPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD 134
Query: 168 TEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE-----SGGSGIVARRLTGQAGSDH 222
+ P RS L GTPE + A++L++ ++ + G G G+
Sbjct: 135 SGG---LPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDG---------PGNAV 182
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
+ IP +K GLVIGKGGETIK +Q R G ++++ + P +T ++ ++I G +++
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGPQNTGADKPLRITGDPYKVQ 240
Query: 283 SAKQLVNEVISE----NRIRN 299
AK++V E+I + +RN
Sbjct: 241 QAKEMVLELIRDQGGFREVRN 261
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 133 IEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAE 192
+ IP VG++IG++GE IK +Q +G +IQ D D +P R ++ G P++ A
Sbjct: 275 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPDRIAQITGPPDRCQHAA 331
Query: 193 QLINDVLAEAESGGSGIVARRLTGQA------------GSDHFAMKIPNNKVGLVIGKGG 240
++I D+L ++G G G+ G F +P K GL+IGKGG
Sbjct: 332 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 391
Query: 241 ETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292
ETIK++ ++GARI+ + + PP + I GT +QI+ A+QL+ E I
Sbjct: 392 ETIKSISQQSGARIE-LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 24/171 (14%)
Query: 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD----TEADLNSPTRSVELMGTPE 186
++I IP + G++IGK GETIK LQ ++G K+ + +D T AD + + + G P
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD-----KPLRITGDPY 237
Query: 187 QIAKAEQLINDVLAEAESGGSGIVAR----RLTGQAGSDHFAMKIPNNKVGLVIGKGGET 242
++ +A++++ +++ + GG V R+ G G D + IP VG+VIG+ GE
Sbjct: 238 KVQQAKEMVLELIRD--QGGFREVRNEYGSRIGGNEGID---VPIPRFAVGIVIGRNGEM 292
Query: 243 IKNMQARTGARIQVIPLHLPPGDTST-ERTVQIDGTSEQIESAKQLVNEVI 292
IK +Q G RIQ P D +T +R QI G ++ + A +++ +++
Sbjct: 293 IKKIQNDAGVRIQ-----FKPDDGTTPDRIAQITGPPDRCQHAAEIITDLL 338
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 124/262 (47%), Gaps = 48/262 (18%)
Query: 60 FQAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPV 119
F+ A +RA QIAA++ +S D G+ L+ P A V
Sbjct: 27 FKDALQRARQIAAKIGGDAGTS------------LNSNDYGYGGQKRPLEDGDQPDAKKV 74
Query: 120 -----SYGG-----YQSMGTSKKIE---IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTR 166
S+G +Q S E +P+ VG IIG+ GE I +Q +SG KIQ+
Sbjct: 75 PPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAP 134
Query: 167 DTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE-----SGGSGIVARRLTGQAGSD 221
D+ P RS L GTPE + A++L++ ++ + G G G+
Sbjct: 135 DSGG---LPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDG---------PGNA 182
Query: 222 HFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQI 281
+ IP +K GLVIGKGGETIK +Q R G ++++ + P +T ++ ++I G ++
Sbjct: 183 VQEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGPQNTGADKPLRITGDPYKV 240
Query: 282 ESAKQLVNEVISE----NRIRN 299
+ AK++V E+I + +RN
Sbjct: 241 QQAKEMVLELIRDQGGFREVRN 262
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 133 IEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAE 192
+ IP VG++IG++GE IK +Q +G +IQ D D +P R ++ G P++ A
Sbjct: 276 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPDRIAQITGPPDRCQHAA 332
Query: 193 QLINDVLAEAESGGSGIVARRLTGQA------------GSDHFAMKIPNNKVGLVIGKGG 240
++I D+L ++G G G+ G F +P K GL+IGKGG
Sbjct: 333 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 392
Query: 241 ETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292
ETIK++ ++GARI+ + PP + I GT +QI+ A+QL+ E I
Sbjct: 393 ETIKSISQQSGARIE-LQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 443
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 24/171 (14%)
Query: 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD----TEADLNSPTRSVELMGTPE 186
++I IP + G++IGK GETIK LQ ++G K+ + +D T AD + + + G P
Sbjct: 184 QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD-----KPLRITGDPY 238
Query: 187 QIAKAEQLINDVLAEAESGGSGIVAR----RLTGQAGSDHFAMKIPNNKVGLVIGKGGET 242
++ +A++++ +++ + GG V R+ G G D + IP VG+VIG+ GE
Sbjct: 239 KVQQAKEMVLELIRD--QGGFREVRNEYGSRIGGNEGID---VPIPRFAVGIVIGRNGEM 293
Query: 243 IKNMQARTGARIQVIPLHLPPGDTST-ERTVQIDGTSEQIESAKQLVNEVI 292
IK +Q G RIQ P D +T +R QI G ++ + A +++ +++
Sbjct: 294 IKKIQNDAGVRIQ-----FKPDDGTTPDRIAQITGPPDRCQHAAEIITDLL 339
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1
Length = 362
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E ++ +T + + +P ++ G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQ-IESAKQLV 288
V LP STER + I G + IE KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
TS ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG---STDRQVTITGSAASI 341
Query: 189 AKAEQLINDVLAEAESGGSG 208
+ A+ LIN V +E+GG G
Sbjct: 342 SLAQYLIN-VRLSSETGGMG 360
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 214 LTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQ 273
L A + + IPN+ +G +IG+ G I ++ +GA+I++ P + ST+R V
Sbjct: 278 LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGSTDRQVT 333
Query: 274 IDGTSEQIESAKQLVNEVIS 293
I G++ I A+ L+N +S
Sbjct: 334 ITGSAASISLAQYLINVRLS 353
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSI 155
Query: 189 AKAEQLINDVLAEA 202
+ + I V+ E+
Sbjct: 156 IECVKQICVVMLES 169
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 230 NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVN 289
+VG +IGK GE++K M+ +GARI + + P ER + + G + I A ++
Sbjct: 23 KEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTNAIFKAFAMII 76
Query: 290 EVISENRIRNPAMAGGYSQQGYQARPPTSW 319
+ + E+ ++ + +RPP +
Sbjct: 77 DKLEED------ISSSMTNSTAASRPPVTL 100
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1
Length = 365
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E ++ +T + + +P ++ G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQ-IESAKQLV 288
V LP STER + I G + IE KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
TS ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 288 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG---STDRQVTITGSAASI 344
Query: 189 AKAEQLINDVLAEAESGGSG 208
+ A+ LIN V +E+GG G
Sbjct: 345 SLAQYLIN-VRLSSETGGMG 363
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 214 LTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQ 273
L A + + IPN+ +G +IG+ G I ++ +GA+I++ P + ST+R V
Sbjct: 281 LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGSTDRQVT 336
Query: 274 IDGTSEQIESAKQLVNEVIS 293
I G++ I A+ L+N +S
Sbjct: 337 ITGSAASISLAQYLINVRLS 356
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSI 155
Query: 189 AKAEQLINDVLAEAES 204
+ + I V+ E S
Sbjct: 156 IECVKQICVVMLETLS 171
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 230 NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVN 289
+VG +IGK GE++K M+ +GARI + + P ER + + G + I A ++
Sbjct: 23 KEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTNAIFKAFAMII 76
Query: 290 EVISENRIRNPAMAGGYSQQGYQARPPTSW 319
+ + E+ ++ + +RPP +
Sbjct: 77 DKLEED------ISSSMTNSTAASRPPVTL 100
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P V +IIG+ G IK L+ Q+GA+I V DTE D+ R + + G P Q+ KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTE-DVGDE-RVLLISGFPVQVCKA 111
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTG 251
+ I+ +L E V+ +L+ +P VG +IG+GGETI+++ +G
Sbjct: 112 KAAIHQILTENTP-----VSEQLS-----------VPQRSVGRIIGRGGETIRSICKASG 155
Query: 252 ARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
A+I G R ++I GT +++ +AK L+ E +SE+
Sbjct: 156 AKITCDK--ESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 197
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
S+++ +P VG IIG+ GETI+ + SGAKI +++E L +R +++ GT +++
Sbjct: 125 VSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTL-LLSRLIKISGTQKEV 183
Query: 189 AKAEQLINDVLAEAE 203
A A+ LI + ++E E
Sbjct: 184 AAAKHLILEKVSEDE 198
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh
PE=1 SV=1
Length = 560
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P V +IIG+ G IK L+ Q+GA+I V DTE D+ R + + G P Q+ KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTE-DVGDE-RVLLISGFPVQVCKA 111
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFA-MKIPNNKVGLVIGKGGETIKNMQART 250
+ I+ +L E + F + +P VG +IG+GGETI+++ +
Sbjct: 112 KAAIHQILTE-----------------NTPVFEQLSVPQRSVGRIIGRGGETIRSICKAS 154
Query: 251 GARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
GA+I G R ++I GT +++ +AK L+ E +SE+
Sbjct: 155 GAKITCDK--ESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 197
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAK 190
+++ +P VG IIG+ GETI+ + SGAKI +++E L +R +++ GT +++A
Sbjct: 127 EQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTL-LLSRLIKISGTQKEVAA 185
Query: 191 AEQLINDVLAEAE 203
A+ LI + ++E E
Sbjct: 186 AKHLILEKVSEDE 198
>sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2
SV=1
Length = 356
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEG-----NCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E + +T + + +P + G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQI-ESAKQLV 288
V LP STER + I G + + E KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPNN +G +IG+ G I ++ +GA+I++ P + S+ R V I G++ I A
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKI----ANPVEGSSGRQVTITGSAASISLA 339
Query: 285 KQLVNEVISENR 296
+ L+N +S +
Sbjct: 340 QYLINARLSSEK 351
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
T+ ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG---SSGRQVTITGSAASI 336
Query: 189 AKAEQLINDVLAEAESGGS 207
+ A+ LIN L+ + G
Sbjct: 337 SLAQYLINARLSSEKGMGC 355
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSV 155
Query: 189 AKAEQLINDVLAEAES 204
+ + I V+ E S
Sbjct: 156 TECVKQICLVMLETLS 171
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
+ + +VG +IGK GE++K ++ +GARI + + P ER + + G + I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP------ERIITLTGPTNAIF 69
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + + E+ N +M + +RPP +
Sbjct: 70 KAFAMIIDKLEED--INSSMTNSTA----ASRPPVTL 100
>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1
Length = 356
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEG-----NCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E + +T + + +P + G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQI-ESAKQLV 288
V LP STER + I G + + E KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPNN +G +IG+ G I ++ +GA+I++ P + S+ R V I G++ I A
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKI----ANPVEGSSGRQVTITGSAASISLA 339
Query: 285 KQLVNEVISENR 296
+ L+N +S +
Sbjct: 340 QYLINARLSSEK 351
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
T+ ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG---SSGRQVTITGSAASI 336
Query: 189 AKAEQLINDVLAEAESGGS 207
+ A+ LIN L+ + G
Sbjct: 337 SLAQYLINARLSSEKGMGC 355
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSV 155
Query: 189 AKAEQLINDVLAEAES 204
+ + I V+ E S
Sbjct: 156 TECVKQICLVMLETLS 171
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
+ + +VG +IGK GE++K ++ +GARI + + P ER + + G + I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP------ERIITLTGPTNAIF 69
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + + E+ N +M + +RPP +
Sbjct: 70 KAFAMIIDKLEED--INSSMTNSTA----ASRPPVTL 100
>sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2
Length = 356
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEG-----NCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E + +T + + +P + G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQI-ESAKQLV 288
V LP STER + I G + + E KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPNN +G +IG+ G I ++ +GA+I++ P + S+ R V I G++ I A
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKI----ANPVEGSSGRQVTITGSAASISLA 339
Query: 285 KQLVNEVISENR 296
+ L+N +S +
Sbjct: 340 QYLINARLSSEK 351
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
T+ ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG---SSGRQVTITGSAASI 336
Query: 189 AKAEQLINDVLAEAESGGS 207
+ A+ LIN L+ + G
Sbjct: 337 SLAQYLINARLSSEKGMGC 355
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSV 155
Query: 189 AKAEQLINDVLAEAES 204
+ + I V+ E S
Sbjct: 156 TECVKQICLVMLETLS 171
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
+ + +VG +IGK GE++K ++ +GARI + + P ER + + G + I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP------ERIITLTGPTNAIF 69
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + + E+ N +M + +RPP +
Sbjct: 70 KAFAMIIDKLEED--INSSMTNSTA----ASRPPVTL 100
>sp|Q5E9A3|PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1
Length = 356
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199
VG IIGK GE++K ++ +SGA+I ++ N P R + L G I KA +I D L
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEG-----NCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 200 AEAESGGSGIVARRLTGQAGSDH----FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255
E + +T + + +P + G +IGKGG IK ++ TGA++Q
Sbjct: 80 EED-------INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132
Query: 256 VIPLHLPPGDTSTERTVQIDGTSEQI-ESAKQLV 288
V LP STER + I G + + E KQ+
Sbjct: 133 VAGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPNN +G +IG+ G I ++ +GA+I++ P + S+ R V I G++ I A
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKI----ANPVEGSSGRQVTITGSAASISLA 339
Query: 285 KQLVNEVISENR 296
+ L+N +S +
Sbjct: 340 QYLINARLSSEK 351
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
T+ ++ IPN +G IIG+ G I ++ SGA+I++ E S R V + G+ I
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG---SSGRQVTITGSAASI 336
Query: 189 AKAEQLINDVLAEAESGGS 207
+ A+ LIN L+ + G
Sbjct: 337 SLAQYLINARLSSEKGMGC 355
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R++ + G P+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSV 155
Query: 189 AKAEQLINDVLAEAES 204
+ + I V+ E S
Sbjct: 156 TECVKQICLVMLETLS 171
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
+ + +VG +IGK GE++K ++ +GARI + + P ER + + G + I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP------ERIITLTGPTNAIF 69
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + + E+ N +M + +RPP +
Sbjct: 70 KAFAMIIDKLEED--INSSMTNSTA----ASRPPVTL 100
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2
Length = 371
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 119 VSYGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRS 178
VS GG ++ + ++ + VG IIGK GET+K ++ +SGA+I ++ N P R
Sbjct: 37 VSEGGL-NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-----NCPERI 90
Query: 179 VELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSD---HFAMKIPNNKVGLV 235
V + G + I KA +I E I+ A S + +P ++ G +
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEE------DIINSMSNSPATSKPPVTLRLVVPASQCGSL 144
Query: 236 IGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
IGKGG IK ++ TGA++QV LP STER V I GT + I + + V+ E+
Sbjct: 145 IGKGGSKIKEIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLES 201
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
++ ++ IPN +G IIG+ G I ++ SGA+I++ TE S R + + GTP I
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG---SSERQITITGTPANI 350
Query: 189 AKAEQLINDVLAEAESG 205
+ A+ LIN L +G
Sbjct: 351 SLAQYLINARLTSEVTG 367
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R+V + GTP+ I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 189 AKAEQLINDVLAEAESGGSGI 209
+ + I V+ E+ G+ I
Sbjct: 188 IQCVKQICVVMLESPPKGATI 208
Score = 39.3 bits (90), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPN+ +G +IG+ G I ++ +GA+I++ + S+ER + I GT I A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI----ANATEGSSERQITITGTPANISLA 353
Query: 285 KQLVN 289
+ L+N
Sbjct: 354 QYLIN 358
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 230 NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVN 289
+VG +IGK GET+K M+ +GARI + + P ER V I G ++ I A ++
Sbjct: 55 KEVGSIIGKKGETVKKMREESGARINISEGNCP------ERIVTITGPTDAIFKAFAMIA 108
Query: 290 EVISENRI 297
E+ I
Sbjct: 109 YKFEEDII 116
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3
Length = 371
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 119 VSYGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRS 178
VS GG ++ + ++ + VG IIGK GET+K ++ +SGA+I ++ N P R
Sbjct: 37 VSEGGL-NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-----NCPERI 90
Query: 179 VELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSD---HFAMKIPNNKVGLV 235
V + G + I KA +I E I+ A S + +P ++ G +
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEE------DIINSMSNSPATSKPPVTLRLVVPASQCGSL 144
Query: 236 IGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
IGKGG IK ++ TGA++QV LP STER V I GT + I + + V+ E+
Sbjct: 145 IGKGGSKIKEIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLES 201
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
++ ++ IPN +G IIG+ G I ++ SGA+I++ TE S R + + GTP I
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG---SSERQITITGTPANI 350
Query: 189 AKAEQLINDVLAEAESG 205
+ A+ LIN L +G
Sbjct: 351 SLAQYLINARLTSEVTG 367
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+ ++ +P + G +IGK G IK ++ +GA++QV D NS R+V + GTP+ I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 189 AKAEQLINDVLAEAESGGSGI 209
+ + I V+ E+ G+ I
Sbjct: 188 IQCVKQICVVMLESPPKGATI 208
Score = 39.3 bits (90), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 225 MKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESA 284
+ IPN+ +G +IG+ G I ++ +GA+I++ + S+ER + I GT I A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI----ANATEGSSERQITITGTPANISLA 353
Query: 285 KQLVN 289
+ L+N
Sbjct: 354 QYLIN 358
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 230 NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVN 289
+VG +IGK GET+K M+ +GARI + + P ER V I G ++ I A ++
Sbjct: 55 KEVGSIIGKKGETVKKMREESGARINISEGNCP------ERIVTITGPTDAIFKAFAMIA 108
Query: 290 EVISENRI 297
E+ I
Sbjct: 109 YKFEEDII 116
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2
SV=1
Length = 483
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
K+ IP+ G IIGK G+TI LQ ++GA I++++ + + R + GT E +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 192 EQLINDVLAE-----AESGGSGIVARRLTGQ-AGSDHFAMKIPNNKVGLVIGKGGETIKN 245
I + + E A++ I+ + T + +PN+ GL+IGKGG T+K
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 172
Query: 246 MQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
+ ++GA +Q+ P G ER V + G EQ A +L+ + I E+
Sbjct: 173 IMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQED 220
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 212 RRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP-LHLPPGDTSTER 270
R TG+ G + IP+ G +IGKGG+TI +Q TGA I++ PG +TER
Sbjct: 41 RTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG--TTER 98
Query: 271 TVQIDGTSEQIESAKQLVNEVISE 294
I GT E + + + E I E
Sbjct: 99 VCLIQGTVEALNAVHGFIAEKIRE 122
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPL-HLPPGDTSTERTVQIDGTSE 279
D + +P N VG ++GKGG+T+ Q TGARIQ+ PG + R V I GT
Sbjct: 398 DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPG--TRNRKVTITGTPA 455
Query: 280 QIESAKQLVNEVIS 293
++A+ L+ + I+
Sbjct: 456 ATQAAQYLITQRIT 469
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
+I +P VG I+GK G+T+ Q +GA+IQ+++ E + R V + GTP A
Sbjct: 401 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 460
Query: 192 EQLI 195
+ LI
Sbjct: 461 QYLI 464
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1
PE=2 SV=1
Length = 474
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
K+ IP+ G IIGK G+TI LQ ++GA I++++ + + R + GT E +
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 111
Query: 192 EQLINDVLAE-----AESGGSGIVARRLTGQ-AGSDHFAMKIPNNKVGLVIGKGGETIKN 245
I + + E A++ I+ + T + +PN+ GL+IGKGG T+K
Sbjct: 112 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 171
Query: 246 MQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
+ ++GA +Q+ P G ER V + G EQ A +L+ + I E+
Sbjct: 172 IMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQED 219
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 212 RRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP-LHLPPGDTSTER 270
R TG+ G + IP+ G +IGKGG+TI +Q TGA I++ PG +TER
Sbjct: 40 RTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG--TTER 97
Query: 271 TVQIDGTSEQIESAKQLVNEVISE 294
I GT E + + + E I E
Sbjct: 98 VCLIQGTIEALNAVHGFIAEKIRE 121
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPL-HLPPGDTSTERTVQIDGTSE 279
D + +P N VG ++GKGG+T+ Q TGARIQ+ PG + R V I GT
Sbjct: 397 DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPG--TRNRKVTITGTPA 454
Query: 280 QIESAKQLVNEVIS 293
++A+ L+ + I+
Sbjct: 455 ATQAAQYLITQRIT 468
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
+I +P VG I+GK G+T+ Q +GA+IQ+++ E + R V + GTP A
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 459
Query: 192 EQLI 195
+ LI
Sbjct: 460 QYLI 463
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=2 SV=1
Length = 403
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 126 SMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTP 185
S+ + ++ + VG IIGK GET+K ++ QS A+I ++ + P R + G+
Sbjct: 15 SITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERITTITGST 69
Query: 186 EQIAKAEQLI-----NDVLAEAESGGSGI---VARRLTGQAGSDHFAMKIPNNKVGLVIG 237
+ A +I D+ A +GGS V RL IP ++ G +IG
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLV-----------IPASQCGSLIG 118
Query: 238 KGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
K G IK ++ TGA++QV LP STER V + G + I + + VI E+
Sbjct: 119 KAGTKIKEIRETTGAQVQVAGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILES 173
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 76/290 (26%)
Query: 61 QAAKRRAEQIAARLCNSVSAEAKRPRVENGSGG--FDSADKGFSSPPSDLKSIPAPSAIP 118
+ KR EQ +AR+ S + +R GS F + DL + PA
Sbjct: 38 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPA----- 92
Query: 119 VSYGGYQSMG-TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTR 177
GG S + ++ IP + G +IGK+G IK ++ +GA++QV D NS R
Sbjct: 93 --NGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP--NSTER 148
Query: 178 SVELMGTPEQIAKAEQLINDVLAE------------AESGGSGIVA-------------- 211
+V + G P+ I + I V+ E + S G+ +++
Sbjct: 149 AVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAV 208
Query: 212 --------RRLTGQA------------------GSDHFAMKIPNNKVGLVIGKGGETIKN 245
++L+G A S F +PN+ +G VIG+ G I
Sbjct: 209 TPAEVTKLQQLSGHAVPFASPSVVPGMDPSTQTSSQEFL--VPNDLIGCVIGRQGSKISE 266
Query: 246 MQARTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVI 292
++ +GA I++ G+ + ER V I G+ I A+ L+ +
Sbjct: 267 IRQMSGAHIKI-------GNQAEGAGERHVTITGSPVSIALAQYLITACL 309
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+S++ +PN +G +IG+ G I ++ SGA I++ E + R V + G+P I
Sbjct: 242 SSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSI 298
Query: 189 AKAEQLINDVLAEAESGGSG 208
A A+ LI L A+S G
Sbjct: 299 ALAQYLITACLETAKSTSGG 318
Score = 39.7 bits (91), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
M + +VG +IGK GET+K ++ ++ ARI + P ER I G++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP------ERITTITGSTAAVF 73
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + E+ PA G S RPP +
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGSVS------RPPVTL 104
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
Length = 492
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
K+ IP+ G IIGK G+TI LQ ++GA I++++ + + R + GT E +
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 95
Query: 192 EQLINDVLAEA-ESGGSGIVARRLTGQAGSD-----HFAMKIPNNKVGLVIGKGGETIKN 245
I + + E ++ V L Q + + +PN+ GL+IGKGG T+K
Sbjct: 96 HSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKA 155
Query: 246 MQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
+ ++GA +Q+ P G ER V + G EQ+ A + + + E+
Sbjct: 156 VMEQSGAWVQLS--QKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 203
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 212 RRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP-LHLPPGDTSTER 270
R TG+ G + IP+ G +IGKGG+TI +Q TGA I++ PG +TER
Sbjct: 24 RSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG--TTER 81
Query: 271 TVQIDGTSEQIESAKQLVNEVISE 294
+ GT+E + + + E + E
Sbjct: 82 VCLVQGTAEALNAVHSFIAEKVRE 105
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 209 IVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPL-HLPPGDTS 267
+ A +L ++ + + +P N VG ++GKGG+T+ Q TGARIQ+ PG +
Sbjct: 395 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG--T 452
Query: 268 TERTVQIDGTSEQIESAKQLVNEVIS 293
R V I G+ ++A+ L+++ ++
Sbjct: 453 RNRRVTITGSPAATQAAQYLISQRVT 478
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
+I +P VG I+GK G+T+ Q +GA+IQ+++ E + R V + G+P A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 192 EQLIN 196
+ LI+
Sbjct: 470 QYLIS 474
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1
Length = 403
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 126 SMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTP 185
S+ + ++ + VG IIGK GET+K ++ QS A+I ++ + P R + G+
Sbjct: 15 SITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERITTITGST 69
Query: 186 EQIAKAEQLI----NDVLAEAESGGSGI----VARRLTGQAGSDHFAMKIPNNKVGLVIG 237
+ A +I ++ L A + G + V RL IP ++ G +IG
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLV-----------IPASQCGSLIG 118
Query: 238 KGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
K G IK ++ TGA++QV LP STER V + G + I + + VI E+
Sbjct: 119 KAGTKIKEIRETTGAQVQVAGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILES 173
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 114 PSAIPVSYGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLN 173
PS +P G Q+ +S++ +PN +G +IG+ G I ++ SGA I++ E
Sbjct: 229 PSVVPGLDPGTQT--SSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---G 283
Query: 174 SPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208
+ R V + G+P IA A+ LI L A+S G
Sbjct: 284 AGERHVTITGSPVSIALAQYLITACLETAKSTSGG 318
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 61 QAAKRRAEQIAARLCNSVSAEAKRPRVENGSGG--FDSADKGFSSPPSDLKSIPAPSAIP 118
+ KR EQ +AR+ S + +R GS F + DL + PA
Sbjct: 38 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPA----- 92
Query: 119 VSYGGYQSMG-TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTR 177
GG S + ++ IP + G +IGK+G IK ++ +GA++QV D NS R
Sbjct: 93 --NGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP--NSTER 148
Query: 178 SVELMGTPEQIAKAEQLINDVLAEAESGGSGI 209
+V + G P+ I + I V+ E+ G+ I
Sbjct: 149 AVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
M + +VG +IGK GET+K ++ ++ ARI + P ER I G++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP------ERITTITGSTAAVF 73
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + E+ PA G S RPP +
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGNVS------RPPVTL 104
>sp|Q0VCU0|PCBP4_BOVIN Poly(rC)-binding protein 4 OS=Bos taurus GN=PCBP4 PE=2 SV=1
Length = 403
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 126 SMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTP 185
S+ + ++ + VG IIGK GET+K ++ QS A+I ++ + P R + G+
Sbjct: 15 SITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERITTITGST 69
Query: 186 EQIAKAEQLI----NDVLAEAESGGSGI----VARRLTGQAGSDHFAMKIPNNKVGLVIG 237
+ A +I ++ L A + G + V RL IP ++ G +IG
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLV-----------IPASQCGSLIG 118
Query: 238 KGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
K G IK ++ TGA++QV LP STER V + G + I + + VI E+
Sbjct: 119 KAGTKIKEIRETTGAQVQVAGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILES 173
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 76/290 (26%)
Query: 61 QAAKRRAEQIAARLCNSVSAEAKRPRVENGSGG--FDSADKGFSSPPSDLKSIPAPSAIP 118
+ KR EQ +AR+ S + +R GS F + DL + PA
Sbjct: 38 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPA----- 92
Query: 119 VSYGGYQSMG-TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTR 177
GG S + ++ IP + G +IGK+G IK ++ +GA++QV D NS R
Sbjct: 93 --NGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP--NSTER 148
Query: 178 SVELMGTPEQIAKAEQLINDVLAE------------AESGGSGIVA-------------- 211
+V + G P+ I + I V+ E + S G+ +++
Sbjct: 149 AVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGTV 208
Query: 212 --------RRLTGQA------------------GSDHFAMKIPNNKVGLVIGKGGETIKN 245
++L+G A S F +PN+ +G VIG+ G I
Sbjct: 209 TPAEVTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFL--VPNDLIGCVIGRQGSKISE 266
Query: 246 MQARTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVI 292
++ +GA I++ G+ + ER V I G+ I A+ L+ +
Sbjct: 267 IRQMSGAHIKI-------GNQAEGAGERHVTITGSPVSIALAQYLITACL 309
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQI 188
+S++ +PN +G +IG+ G I ++ SGA I++ E + R V + G+P I
Sbjct: 242 SSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSI 298
Query: 189 AKAEQLINDVLAEAESGGSG 208
A A+ LI L A+S G
Sbjct: 299 ALAQYLITACLETAKSTSGG 318
Score = 39.3 bits (90), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282
M + +VG +IGK GET+K ++ ++ ARI + P ER I G++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP------ERITTITGSTAAVF 73
Query: 283 SAKQLVNEVISENRIRNPAMAGGYSQQGYQARPPTSW 319
A ++ + E+ PA G S RPP +
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGNVS------RPPVTL 104
>sp|O57526|IF23B_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus
laevis GN=igf2bp3-b PE=1 SV=1
Length = 593
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI + R A + + + + TPE + A
Sbjct: 208 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA--GAAEKPITIHSTPEGCSAA 265
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIP------NNKVGLVIGKGGETIKN 245
++I +++ + +A F +IP NN VG +IGK G +K
Sbjct: 266 CKIIMEIMQK---------------EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 310
Query: 246 MQARTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVISE 294
++ T +I + PL D + ERT+ + G+ E A++ V + I E
Sbjct: 311 IEQDTDTKITISPLQ----DLTLYNPERTITVKGSIETCAKAEEEVMKKIRE 358
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 135 IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQL 194
IP + VG IIGK G+ IK L +GA I++ D + R V + G PE KA+
Sbjct: 424 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPD--AKLRMVIITGPPEAQFKAQGR 481
Query: 195 INDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARI 254
I L E G + +K+P+ G VIGKGG+T+ +Q T A +
Sbjct: 482 IYGKLKEENFFGPK--------EEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV 533
Query: 255 QVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
V+P P D + + V+I G + A++ + E+++
Sbjct: 534 -VVPRDQTP-DENDQVVVKITGHFYASQLAQRKIQEILA 570
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
KI N VG +IGK G +K ++ + KI ++ + L +P R++ + G+ E AKA
Sbjct: 289 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 348
Query: 192 EQLINDVLAEA---ESGGSGIVARRLTG-------------------------------- 216
E+ + + E+ + + A + G
Sbjct: 349 EEEVMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGMPPPSAGVSSPTTSASY 408
Query: 217 -----QAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP 258
Q S+ + IP VG +IGK G+ IK + GA I++ P
Sbjct: 409 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP 455
>sp|Q08CK7|IF2B1_DANRE Insulin-like growth factor 2 mRNA-binding protein 1 OS=Danio rerio
GN=igf2bp1 PE=1 SV=1
Length = 598
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 24/169 (14%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI V R A + + + + TPE + A
Sbjct: 202 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA--GAAEKPISIHSTPEGCSAA 259
Query: 192 EQLINDVLA-EAESGGSGIVARRLTGQAGSDHFAMKIP--NNKVGLVIGKGGETIKNMQA 248
++I +++ EA+ + +D +K+ NN VG +IGK G +K ++
Sbjct: 260 CRMILEIMNQEAKDTKT------------ADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQ 307
Query: 249 RTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVISE 294
T +I + PL D + ERT+ + G+ E A+Q + + + E
Sbjct: 308 DTDTKITISPLQ----DLTLYNPERTITVKGSIEACCLAEQEIMKKVRE 352
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 135 IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQL 194
IP VG +IGK G+ IK L +GA I++ D S R V + G PE KA+
Sbjct: 414 IPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPD--SKMRMVIVTGPPEAQFKAQGR 471
Query: 195 INDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARI 254
I L E G + T +K+ G VIGKGG+T+ +Q T A +
Sbjct: 472 IYGKLKEENFFGPKEEVKLET--------HIKVAAAAAGRVIGKGGKTVNELQNLTAAEV 523
Query: 255 QVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294
V+P P D + V+I G + A++ + +++++
Sbjct: 524 -VVPREQTP-DEHDQVIVKIIGHFYASQLAQRKIRDILTQ 561
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
K+ N VG +IGK G +K ++ + KI ++ + L +P R++ + G+ E A
Sbjct: 283 KVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYNPERTITVKGSIEACCLA 342
Query: 192 EQLI---------NDVLAE---------AESGGSGIVARRL------------------T 215
EQ I ND+ A G G+
Sbjct: 343 EQEIMKKVREAYDNDIAAMNQQTHLIPGLNLGAIGLFPPSSAMPPPALGNSVPGPPYGPM 402
Query: 216 GQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQID 275
G + + + IP VG +IGK G+ IK + GA I++ P P S R V +
Sbjct: 403 GASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPD---SKMRMVIVT 459
Query: 276 G 276
G
Sbjct: 460 G 460
>sp|O00425|IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens
GN=IGF2BP3 PE=1 SV=2
Length = 579
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI V R A + +S+ ++ TPE + A
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA--GAAEKSITILSTPEGTSAA 256
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIP------NNKVGLVIGKGGETIKN 245
+ I +++ + +A F +IP NN VG +IGK G +K
Sbjct: 257 CKSILEIMHK---------------EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 301
Query: 246 MQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294
++ T +I + PL + ERT+ + G E A++ + + I E
Sbjct: 302 IEQDTDTKITISPLQ-ELTLYNPERTITVKGNVETCAKAEEEIMKKIRE 349
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 34/183 (18%)
Query: 125 QSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGT 184
QS + + IP + VG IIGK G+ IK L +GA I++ D + R V + G
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPD--AKVRMVIITGP 459
Query: 185 PEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFA-----------MKIPNNKVG 233
PE A+ ++ G R+ G+ ++F +++P+ G
Sbjct: 460 PE-------------AQFKAQG------RIYGKIKEENFVSPKEEVKLEAHIRVPSFAAG 500
Query: 234 LVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
VIGKGG+T+ +Q + A + V+P P D + + V+I G + A++ + E+++
Sbjct: 501 RVIGKGGKTVNELQNLSSAEV-VVPRDQTP-DENDQVVVKITGHFYACQVAQRKIQEILT 558
Query: 294 ENR 296
+ +
Sbjct: 559 QVK 561
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 85/227 (37%), Gaps = 59/227 (25%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
KI N VG +IGK G +K ++ + KI ++ E L +P R++ + G E AKA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 192 EQLINDVLAEA---ESGGSGIVARRLTG-------------------------------- 216
E+ I + E+ + + A + G
Sbjct: 340 EEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQ 399
Query: 217 --QAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQI 274
Q+ ++ + IP VG +IGK G+ IK + GA I++ P P R V I
Sbjct: 400 FEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV---RMVII 456
Query: 275 DG----------------TSEQIESAKQLVNEVISENRIRNPAMAGG 305
G E S K+ EV E IR P+ A G
Sbjct: 457 TGPPEAQFKAQGRIYGKIKEENFVSPKE---EVKLEAHIRVPSFAAG 500
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 122 GGYQSMGTSKKIE-----IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEAD-LNSP 175
GYQS G + E IP + VG IIGK G+ IK L +GA I++ AD +++
Sbjct: 397 AGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI---APADGIDAK 453
Query: 176 TRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLV 235
R V + G PE KA+ I L E G + +K+P+ G V
Sbjct: 454 QRMVIISGPPEAQFKAQGRIFGKLKEENFFGP--------KEEVKLEAHIKVPSFAAGRV 505
Query: 236 IGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295
IGKGG+T+ +Q T A + V+P P D + + V+I G + A++ + E+IS+
Sbjct: 506 IGKGGKTVNELQNLTSAEV-VVPRDQTP-DENDQVVVKITGHFYASQLAQRKIQEIISQV 563
Query: 296 R 296
R
Sbjct: 564 R 564
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 22/168 (13%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI + R A + + + + TPE + A
Sbjct: 198 RLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENA--GAAEKPITVHSTPEGCSSA 255
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIP--NNKVGLVIGKGGETIKNMQAR 249
+ I +++ + E+ + I ++ +KI NN VG +IGK G +K ++
Sbjct: 256 CRNIMEIM-QKEAIDTKI----------TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQD 304
Query: 250 TGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVISE 294
T +I + PL D + ERT+ + GT + A++ + + + E
Sbjct: 305 TDTKITISPLQ----DLTLYNPERTITVKGTLDACAKAEEEIMKKVRE 348
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
KI N VG +IGK G +K ++ + KI ++ + L +P R++ + GT + AKA
Sbjct: 279 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKA 338
Query: 192 EQLI---------NDVLAE--------------------AESGGS--GIVA--------- 211
E+ I NDV A A SGG +V+
Sbjct: 339 EEEIMKKVRESYENDVAAMHLQSNLIPGLNLNALGLFPGAASGGISPSVVSGPPPGAQAG 398
Query: 212 -RRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTER 270
+ Q S+ + IP VG +IGK G+ IK + GA I++ P G + +R
Sbjct: 399 YQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP---ADGIDAKQR 455
Query: 271 TVQIDG 276
V I G
Sbjct: 456 MVIISG 461
>sp|Q5ZLP8|IF2B3_CHICK Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus
gallus GN=IGF2BP3 PE=2 SV=1
Length = 584
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI + R A + + + + TPE + A
Sbjct: 200 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA--GAAEKPITIHSTPEGCSTA 257
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIP------NNKVGLVIGKGGETIKN 245
++I +++ + +A F +IP NN VG +IGK G +K
Sbjct: 258 CKIIMEIMQK---------------EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 302
Query: 246 MQARTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVISE 294
++ T +I + PL D + ERT+ + G+ E A++ + + I E
Sbjct: 303 IEQDTDTKITISPLQ----DLTLYNPERTITVKGSIETCAKAEEEIMKKIRE 350
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 135 IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQL 194
IP + VG IIGK G+ IK L +GA I++ D + R V + G PE KA+
Sbjct: 416 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPD--AKLRMVIITGPPEAQFKAQGR 473
Query: 195 INDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARI 254
I L E G + +K+P+ G VIGKGG+T+ +Q T A +
Sbjct: 474 IYGKLKEENFFGP--------KEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV 525
Query: 255 QVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
V+P P D + + V+I G + A++ + E+++
Sbjct: 526 -VVPRDQTP-DENDQVVVKITGHFYACQLAQRKIQEILA 562
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
KI N VG +IGK G +K ++ + KI ++ + L +P R++ + G+ E AKA
Sbjct: 281 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 340
Query: 192 EQLINDVLAEA---ESGGSGIVARRLTG-------------------------------- 216
E+ I + E+ + + A + G
Sbjct: 341 EEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGIPPPAVSVASAAAAASY 400
Query: 217 -----QAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP 258
Q S+ + IP VG +IGK G+ IK + GA I++ P
Sbjct: 401 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP 447
>sp|O73932|IF23A_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus
laevis GN=igf2bp3-a PE=1 SV=1
Length = 594
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
++ +P VG IIGK G TI+ + Q+ +KI + R A + + + + TPE + A
Sbjct: 209 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA--GAAEKPITIHSTPEGCSAA 266
Query: 192 EQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIP------NNKVGLVIGKGGETIKN 245
++I +++ + +A F +IP NN VG +IGK G +K
Sbjct: 267 CKIIMEIMQK---------------EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 311
Query: 246 MQARTGARIQVIPLHLPPGDTST---ERTVQIDGTSEQIESAKQLVNEVISE 294
++ T +I + PL D + ERT+ + G+ E A++ + + I E
Sbjct: 312 IEQDTDTKITISPLQ----DLTLYNPERTITVKGSIEPCAKAEEEIMKKIRE 359
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 135 IPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQL 194
IP + VG IIGK G+ IK L +GA I++ D + R V + G PE KA+
Sbjct: 425 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPD--AKLRMVIITGPPEAQFKAQGR 482
Query: 195 INDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARI 254
I L E G + T +K+P+ G VIGKGG+T+ +Q T A +
Sbjct: 483 IYGKLKEENFFGPKEEVKLETH--------IKVPSYAAGRVIGKGGKTVNELQNLTSAEV 534
Query: 255 QVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293
V+P P D + E V+I G + A++ + E+++
Sbjct: 535 -VVPRDQTP-DENDEVVVKITGHFYASQLAQRKIQEILA 571
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 132 KIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKA 191
KI N VG +IGK G +K ++ + KI ++ + L +P R++ + G+ E AKA
Sbjct: 290 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKA 349
Query: 192 EQLINDVLAEA---ESGGSGIVARRLTG-------------------------------- 216
E+ I + E+ + + A + G
Sbjct: 350 EEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPSSSSGMPPPSVGVPSPTSSTSY 409
Query: 217 -----QAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP 258
Q S+ + IP VG +IGK G+ IK + GA I++ P
Sbjct: 410 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 311,719,689
Number of Sequences: 539616
Number of extensions: 16300803
Number of successful extensions: 64986
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 3041
Number of HSP's that attempted gapping in prelim test: 39014
Number of HSP's gapped (non-prelim): 14730
length of query: 669
length of database: 191,569,459
effective HSP length: 124
effective length of query: 545
effective length of database: 124,657,075
effective search space: 67938105875
effective search space used: 67938105875
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.6 bits)