Query 005922
Match_columns 669
No_of_seqs 353 out of 2149
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 1.5E-28 5.2E-33 238.3 9.9 168 127-296 4-177 (178)
2 3krm_A Insulin-like growth fac 99.9 1E-27 3.4E-32 229.2 13.6 158 129-298 3-160 (163)
3 2jvz_A KH type-splicing, FAR u 99.9 1.4E-27 4.8E-32 227.7 12.3 160 129-295 2-161 (164)
4 1j4w_A FUSE binding protein; s 99.9 1.7E-27 5.8E-32 230.3 11.6 160 129-292 3-174 (174)
5 2jzx_A Poly(RC)-binding protei 99.9 1.3E-27 4.3E-32 227.8 10.5 156 128-294 4-159 (160)
6 2qnd_A FMR1 protein; KH domain 99.8 9.5E-21 3.2E-25 179.1 9.1 136 129-294 4-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.7 1.9E-18 6.5E-23 173.9 9.1 143 129-295 34-192 (219)
8 3n89_A Defective in GERM LINE 99.7 1.1E-17 3.9E-22 179.6 11.0 165 128-292 29-259 (376)
9 2anr_A Neuro-oncological ventr 99.7 6.8E-18 2.3E-22 163.4 2.4 139 61-202 26-176 (178)
10 2jzx_A Poly(RC)-binding protei 99.7 3.4E-18 1.1E-22 162.7 -0.5 134 61-201 25-159 (160)
11 1tua_A Hypothetical protein AP 99.7 5.5E-17 1.9E-21 160.0 6.7 142 129-294 4-160 (191)
12 2jvz_A KH type-splicing, FAR u 99.6 4.8E-17 1.6E-21 154.8 3.8 136 61-203 22-162 (164)
13 3krm_A Insulin-like growth fac 99.6 4.5E-17 1.5E-21 155.3 3.3 132 61-203 23-158 (163)
14 1j4w_A FUSE binding protein; s 99.6 3.5E-17 1.2E-21 158.0 0.9 137 61-199 23-174 (174)
15 2hh2_A KH-type splicing regula 99.5 4.3E-15 1.5E-19 133.7 6.4 74 222-296 8-81 (107)
16 2hh3_A KH-type splicing regula 99.5 8.3E-15 2.9E-19 131.8 7.1 74 221-298 11-84 (106)
17 1dtj_A RNA-binding neurooncolo 99.5 5.2E-15 1.8E-19 124.5 4.9 73 129-201 3-75 (76)
18 1ec6_A RNA-binding protein NOV 99.5 1.3E-14 4.3E-19 125.6 5.7 75 129-203 3-77 (87)
19 2axy_A Poly(RC)-binding protei 99.5 8.1E-15 2.8E-19 123.1 4.3 70 128-202 4-73 (73)
20 1zzk_A Heterogeneous nuclear r 99.5 2E-14 7E-19 123.1 6.8 73 127-202 5-77 (82)
21 2hh2_A KH-type splicing regula 99.5 1.6E-14 5.5E-19 129.9 5.9 75 129-203 7-81 (107)
22 1x4n_A FAR upstream element bi 99.5 3.9E-14 1.3E-18 124.0 7.5 74 219-296 13-86 (92)
23 2axy_A Poly(RC)-binding protei 99.5 2.5E-14 8.7E-19 120.0 5.7 70 220-295 4-73 (73)
24 1x4n_A FAR upstream element bi 99.5 2.7E-14 9.3E-19 125.0 6.1 75 127-204 13-87 (92)
25 1zzk_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 120.0 8.1 72 220-295 6-77 (82)
26 1wvn_A Poly(RC)-binding protei 99.5 1.8E-14 6.1E-19 123.4 4.5 72 128-202 5-76 (82)
27 2p2r_A Poly(RC)-binding protei 99.5 1.8E-14 6.2E-19 121.5 4.2 72 128-202 4-75 (76)
28 1wvn_A Poly(RC)-binding protei 99.5 4.1E-14 1.4E-18 121.1 6.2 72 220-295 5-76 (82)
29 1dtj_A RNA-binding neurooncolo 99.5 6.4E-14 2.2E-18 117.8 7.0 73 221-294 3-75 (76)
30 2hh3_A KH-type splicing regula 99.5 4.1E-14 1.4E-18 127.3 5.9 74 129-205 11-84 (106)
31 2p2r_A Poly(RC)-binding protei 99.5 4.5E-14 1.5E-18 119.1 5.7 72 220-295 4-75 (76)
32 1j5k_A Heterogeneous nuclear r 99.5 2.5E-14 8.4E-19 124.5 4.2 73 127-202 12-84 (89)
33 2opv_A KHSRP protein; KH domai 99.4 1.6E-13 5.6E-18 118.2 8.6 73 220-294 13-85 (85)
34 1x4m_A FAR upstream element bi 99.4 8E-14 2.7E-18 122.5 6.0 75 219-295 13-87 (94)
35 1x4m_A FAR upstream element bi 99.4 4.5E-14 1.5E-18 124.1 4.2 76 127-203 13-88 (94)
36 2opv_A KHSRP protein; KH domai 99.4 1.1E-13 3.7E-18 119.3 6.3 72 129-201 14-85 (85)
37 2dgr_A Ring finger and KH doma 99.4 4.9E-14 1.7E-18 121.5 4.0 70 218-294 7-76 (83)
38 1j5k_A Heterogeneous nuclear r 99.4 7.5E-14 2.6E-18 121.4 4.9 72 220-295 13-84 (89)
39 1ec6_A RNA-binding protein NOV 99.4 1.4E-13 4.9E-18 119.0 6.0 75 221-296 3-77 (87)
40 2dgr_A Ring finger and KH doma 99.4 7.2E-14 2.5E-18 120.5 3.9 69 128-202 9-77 (83)
41 1we8_A Tudor and KH domain con 99.4 2.8E-13 9.4E-18 121.2 7.5 75 219-295 13-87 (104)
42 1we8_A Tudor and KH domain con 99.4 1.8E-13 6.1E-18 122.4 5.7 74 129-203 15-88 (104)
43 2cte_A Vigilin; K homology typ 99.3 9.3E-13 3.2E-17 115.8 6.2 72 128-204 16-87 (94)
44 2ctl_A Vigilin; K homology typ 99.3 1.4E-12 4.7E-17 115.5 7.0 74 129-204 17-90 (97)
45 2ctl_A Vigilin; K homology typ 99.3 2.4E-12 8.3E-17 113.9 8.4 73 220-295 16-88 (97)
46 2cte_A Vigilin; K homology typ 99.3 2.2E-12 7.5E-17 113.4 7.3 72 219-296 15-86 (94)
47 1vig_A Vigilin; RNA-binding pr 99.3 1.5E-12 5E-17 108.8 5.5 67 220-292 4-70 (71)
48 2ctm_A Vigilin; K homology typ 99.3 4.7E-12 1.6E-16 111.7 8.7 72 219-295 15-86 (95)
49 2ctm_A Vigilin; K homology typ 99.3 4.2E-12 1.4E-16 112.0 6.7 73 128-204 16-88 (95)
50 2ctf_A Vigilin; K homology typ 99.3 2.7E-13 9.1E-18 121.2 -1.3 89 180-295 4-93 (102)
51 1vig_A Vigilin; RNA-binding pr 99.3 1.8E-12 6.1E-17 108.3 3.7 66 129-199 5-70 (71)
52 2ctk_A Vigilin; K homology typ 99.2 6.3E-12 2.2E-16 112.6 5.9 70 129-203 17-86 (104)
53 2ctk_A Vigilin; K homology typ 99.2 9.2E-12 3.1E-16 111.5 6.1 69 220-294 16-84 (104)
54 2ctf_A Vigilin; K homology typ 99.2 1.9E-11 6.6E-16 109.2 8.2 90 87-203 4-94 (102)
55 2qnd_A FMR1 protein; KH domain 99.1 5.7E-12 1.9E-16 118.9 1.1 72 130-201 68-142 (144)
56 2ctj_A Vigilin; K homology typ 99.1 9.5E-11 3.2E-15 103.4 8.1 72 219-296 15-87 (95)
57 2ctj_A Vigilin; K homology typ 99.1 9.5E-11 3.2E-15 103.4 5.3 72 127-203 15-87 (95)
58 2yqr_A KIAA0907 protein; struc 98.9 2.5E-09 8.6E-14 98.0 7.8 75 221-295 12-100 (119)
59 1k1g_A SF1-BO isoform; splicin 98.9 4.4E-09 1.5E-13 98.0 8.1 75 220-294 6-99 (131)
60 2e3u_A PH-DIM2P, hypothetical 98.8 3.8E-10 1.3E-14 113.5 0.9 124 61-202 54-192 (219)
61 2cpq_A FragIle X mental retard 98.8 1E-09 3.6E-14 96.0 1.9 66 220-294 14-81 (91)
62 2cpq_A FragIle X mental retard 98.8 1.3E-09 4.4E-14 95.5 2.2 62 129-198 15-78 (91)
63 2yqr_A KIAA0907 protein; struc 98.8 5.1E-09 1.8E-13 96.0 6.0 74 129-202 12-100 (119)
64 1k1g_A SF1-BO isoform; splicin 98.7 7.1E-09 2.4E-13 96.6 5.8 74 129-202 7-100 (131)
65 3n89_A Defective in GERM LINE 98.6 1.2E-08 4.2E-13 109.7 4.4 73 219-291 28-103 (376)
66 2bl5_A MGC83862 protein, quaki 98.5 1E-07 3.5E-12 89.6 5.4 74 222-295 3-102 (140)
67 3u1k_A Polyribonucleotide nucl 98.4 1.7E-07 5.7E-12 107.3 6.7 64 220-293 566-630 (630)
68 2bl5_A MGC83862 protein, quaki 98.3 2.3E-07 7.9E-12 87.2 3.7 72 129-201 2-101 (140)
69 1tua_A Hypothetical protein AP 98.1 1.7E-06 5.8E-11 85.4 5.4 64 222-294 5-73 (191)
70 4aid_A Polyribonucleotide nucl 98.0 3.2E-06 1.1E-10 97.9 4.5 65 220-294 569-634 (726)
71 3v69_A Protein filia; RNA-bind 97.8 2.1E-05 7.1E-10 73.2 6.6 69 221-294 56-124 (140)
72 2cxc_A NUSA; transcription ter 97.8 6.4E-06 2.2E-10 77.8 2.4 104 129-257 36-139 (144)
73 3u1k_A Polyribonucleotide nucl 97.7 8.6E-06 2.9E-10 93.2 2.6 63 129-200 567-630 (630)
74 3v69_A Protein filia; RNA-bind 97.4 0.00017 5.7E-09 67.2 6.2 70 129-202 56-125 (140)
75 4aid_A Polyribonucleotide nucl 97.3 5.1E-05 1.7E-09 88.0 1.7 68 129-204 570-637 (726)
76 3cdi_A Polynucleotide phosphor 97.1 0.00014 4.9E-09 84.4 2.9 65 220-294 559-624 (723)
77 1e3p_A Guanosine pentaphosphat 96.8 0.00012 4.1E-09 85.4 -1.4 62 221-292 598-660 (757)
78 2asb_A Transcription elongatio 96.7 0.00064 2.2E-08 69.5 3.3 95 139-259 127-222 (251)
79 1k0r_A NUSA; two component arr 96.6 0.0009 3.1E-08 71.8 3.4 102 131-258 237-344 (366)
80 3cdi_A Polynucleotide phosphor 95.9 0.0013 4.6E-08 76.4 0.0 67 129-203 560-626 (723)
81 1hh2_P NUSA, N utilization sub 95.7 0.0069 2.4E-07 64.6 4.5 94 139-258 246-340 (344)
82 1e3p_A Guanosine pentaphosphat 94.5 0.0022 7.6E-08 74.8 -3.8 62 129-199 598-660 (757)
83 2cxc_A NUSA; transcription ter 87.1 0.3 1E-05 46.0 2.8 39 221-259 36-74 (144)
84 1k0r_A NUSA; two component arr 84.0 0.33 1.1E-05 52.2 1.5 40 129-168 307-346 (366)
85 4hhu_A OR280; engineered prote 81.7 14 0.00049 33.5 11.1 28 176-203 42-69 (170)
86 2asb_A Transcription elongatio 79.6 1.1 3.6E-05 45.9 3.4 40 129-168 184-223 (251)
87 2pt7_G HP1451, hypothetical pr 70.7 1 3.6E-05 42.6 0.6 31 221-251 33-63 (152)
88 3ukx_C Bimax2 peptide; arm rep 69.1 3.6 0.00012 27.4 2.6 17 11-27 7-23 (28)
89 1hh2_P NUSA, N utilization sub 68.4 2.7 9.3E-05 44.7 3.2 39 129-167 303-341 (344)
90 2pt7_G HP1451, hypothetical pr 66.3 2.1 7E-05 40.6 1.6 67 129-202 33-99 (152)
91 2xzm_C KH domain containing pr 65.1 4.8 0.00017 40.9 4.1 59 186-249 17-75 (243)
92 1wh9_A 40S ribosomal protein S 61.7 3.2 0.00011 36.0 1.8 29 221-249 35-63 (92)
93 3iz6_B 40S ribosomal protein S 59.0 5.6 0.00019 40.0 3.3 57 186-249 14-72 (227)
94 1wh9_A 40S ribosomal protein S 58.0 2.9 9.8E-05 36.3 0.8 29 129-157 35-63 (92)
95 3iev_A GTP-binding protein ERA 57.5 3.1 0.00011 42.7 1.2 35 222-256 241-284 (308)
96 2ba0_A Archeal exosome RNA bin 56.8 15 0.00051 36.7 6.0 50 223-282 138-187 (229)
97 3gku_A Probable RNA-binding pr 54.1 4.3 0.00015 40.7 1.5 64 188-255 63-126 (225)
98 3af5_A Putative uncharacterize 52.9 8.6 0.00029 43.9 3.9 95 141-257 49-143 (651)
99 3u5c_D RP13, YS3, 40S ribosoma 52.3 2.7 9.2E-05 42.6 -0.3 29 221-249 44-72 (240)
100 3gku_A Probable RNA-binding pr 51.1 3 0.0001 41.9 -0.2 67 130-201 93-159 (225)
101 2z0s_A Probable exosome comple 50.9 23 0.00078 35.3 6.2 57 223-289 150-207 (235)
102 2ycb_A Beta-CAsp RNAse, cleava 50.6 8.7 0.0003 43.7 3.5 95 141-257 40-134 (636)
103 2z0s_A Probable exosome comple 48.0 22 0.00075 35.5 5.6 58 131-196 150-207 (235)
104 2zkq_c 40S ribosomal protein S 47.7 5.3 0.00018 40.5 1.0 30 221-250 44-73 (243)
105 2xr1_A Cleavage and polyadenyl 46.6 8.1 0.00028 44.1 2.4 95 141-257 44-138 (640)
106 3i1m_C 30S ribosomal protein S 46.3 7 0.00024 39.4 1.6 35 222-256 63-101 (233)
107 2ba0_A Archeal exosome RNA bin 46.0 18 0.0006 36.1 4.5 35 131-165 138-172 (229)
108 4e9j_A General secretion pathw 45.8 67 0.0023 31.8 8.8 96 159-291 139-240 (246)
109 3eik_A Tata-box-binding protei 44.6 57 0.0019 32.5 7.8 26 270-295 188-215 (218)
110 3u27_C Microcompartments prote 39.3 2.2E+02 0.0076 28.3 11.2 141 152-295 55-213 (220)
111 3j20_C 30S ribosomal protein S 38.8 17 0.00059 36.0 3.1 28 221-248 40-67 (210)
112 2vqe_C 30S ribosomal protein S 38.6 14 0.00046 37.5 2.3 28 222-249 63-90 (239)
113 1ytb_A Protein (tata binding p 38.1 80 0.0027 30.4 7.6 102 179-295 61-177 (180)
114 3io0_A ETUB protein; tamdem re 36.5 3.4E+02 0.012 27.2 12.0 127 152-290 57-209 (230)
115 2ja9_A Exosome complex exonucl 34.7 26 0.00088 33.6 3.5 35 131-165 93-128 (175)
116 1rm1_A Tata-box binding protei 33.9 91 0.0031 31.4 7.5 27 270-296 210-238 (240)
117 1ega_A Protein (GTP-binding pr 33.9 18 0.00062 36.8 2.5 34 223-256 233-275 (301)
118 3u5c_D RP13, YS3, 40S ribosoma 32.9 15 0.00052 37.1 1.6 28 130-157 45-72 (240)
119 3gfh_A Ethanolamine utilizatio 32.5 1E+02 0.0034 30.9 7.4 140 152-294 53-210 (225)
120 1o4u_A Type II quinolic acid p 30.9 2.4E+02 0.0083 28.9 10.3 97 188-294 13-112 (285)
121 3r8n_C 30S ribosomal protein S 30.5 17 0.00058 36.0 1.5 36 222-257 62-101 (206)
122 1in0_A YAJQ protein, HI1034; a 29.5 2.4E+02 0.0081 26.9 9.0 41 241-290 108-149 (163)
123 2kie_A Inositol polyphosphate 28.9 1.1E+02 0.0036 27.6 6.1 58 135-201 61-119 (124)
124 3iz6_B 40S ribosomal protein S 27.7 16 0.00054 36.8 0.7 29 129-157 44-72 (227)
125 2ja9_A Exosome complex exonucl 27.7 38 0.0013 32.4 3.4 49 223-281 93-143 (175)
126 2xzm_C KH domain containing pr 27.5 19 0.00065 36.5 1.3 29 129-157 47-75 (243)
127 3j20_C 30S ribosomal protein S 26.9 17 0.00057 36.1 0.7 36 130-165 41-83 (210)
128 3dhx_A Methionine import ATP-b 26.8 34 0.0012 29.8 2.6 50 148-197 35-87 (106)
129 2y9k_A Protein INVG; protein t 25.8 1.4E+02 0.0049 26.7 6.8 53 230-291 73-133 (137)
130 1wf3_A GTP-binding protein; GT 25.5 17 0.0006 37.1 0.6 33 224-256 233-274 (301)
131 2nn6_G Exosome complex exonucl 24.5 24 0.00081 36.6 1.3 35 131-165 212-246 (289)
132 3bbn_C Ribosomal protein S3; s 24.5 21 0.00071 35.6 0.8 28 222-249 71-98 (218)
133 3paj_A Nicotinate-nucleotide p 24.0 5.3E+02 0.018 26.9 11.5 58 232-294 88-149 (320)
134 1qpo_A Quinolinate acid phosph 23.8 4.3E+02 0.015 26.9 10.7 102 186-294 5-112 (284)
135 3bbn_C Ribosomal protein S3; s 23.4 22 0.00076 35.3 0.8 27 131-157 72-98 (218)
136 3r8n_C 30S ribosomal protein S 23.3 15 0.00052 36.3 -0.4 34 131-164 63-100 (206)
137 3gr5_A ESCC; secretin, type II 22.4 2.5E+02 0.0087 25.9 7.9 27 268-294 126-152 (156)
138 3iev_A GTP-binding protein ERA 22.2 28 0.00097 35.4 1.4 28 129-156 240-268 (308)
139 2vqe_C 30S ribosomal protein S 22.0 25 0.00087 35.5 0.9 27 131-157 64-90 (239)
140 3i1m_C 30S ribosomal protein S 21.7 17 0.00058 36.7 -0.4 27 131-157 64-90 (233)
141 2zkq_c 40S ribosomal protein S 21.5 18 0.00061 36.7 -0.3 29 129-157 44-72 (243)
142 3ezj_A General secretion pathw 20.6 1.9E+02 0.0065 28.3 7.1 22 177-198 145-166 (241)
143 3n79_A PDUT; FES cluster, BMC 20.4 3.7E+02 0.013 25.9 8.9 130 152-294 21-160 (192)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.95 E-value=1.5e-28 Score=238.28 Aligned_cols=168 Identities=27% Similarity=0.418 Sum_probs=137.2
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCC
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGG 206 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~ 206 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|+|+|+|+.++|.+|+.+|.+++.+.....
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 34899999999999999999999999999999999999876556678899999999999999999999999998754321
Q ss_pred CCcc------hhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHH
Q 005922 207 SGIV------ARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQ 280 (669)
Q Consensus 207 ~~~~------~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peq 280 (669)
.... ...........+++|+||.+++|+||||+|++||+|+++|||+|+|..+. ...++++++|+|+|+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~~v~I~G~~~~ 161 (178)
T 2anr_A 84 AKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQNRVVTVSGEPEQ 161 (178)
T ss_dssp ----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEEEESSHHH
T ss_pred ccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC--CCCCCCceEEEEEcCHHH
Confidence 1000 00000112246789999999999999999999999999999999997542 122457899999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 005922 281 IESAKQLVNEVISENR 296 (669)
Q Consensus 281 Vq~Ak~LI~dlL~e~~ 296 (669)
|++|+.||+++|+++.
T Consensus 162 v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 162 NRKAVELIIQKIQEDP 177 (178)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999998853
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=229.20 Aligned_cols=158 Identities=28% Similarity=0.388 Sum_probs=134.8
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~ 208 (669)
.+++|+||.+.+|+||||+|++||+|+++|||+|+|.++. .+++.+|+|+|+|+.+++.+|+.+|.++|.+......
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~- 79 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGP- 79 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCS-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc-
Confidence 5799999999999999999999999999999999998753 5678999999999999999999999999988632111
Q ss_pred cchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHH
Q 005922 209 IVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLV 288 (669)
Q Consensus 209 ~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI 288 (669)
......+.+|.||.+++|+||||+|++||+|+++|||+|.|..+..+ ...+++.|+|+|++++|++|+.||
T Consensus 80 -------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I 150 (163)
T 3krm_A 80 -------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--DENDQVIVKIIGHFYASQMAQRKI 150 (163)
T ss_dssp -------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--CTTSEEEEEEEECHHHHHHHHHHH
T ss_pred -------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--CCCCceEEEEEeCHHHHHHHHHHH
Confidence 01124567999999999999999999999999999999999765433 133455899999999999999999
Q ss_pred HHHHhhcccC
Q 005922 289 NEVISENRIR 298 (669)
Q Consensus 289 ~dlL~e~~~r 298 (669)
+++|++.+..
T Consensus 151 ~~~i~~~~~~ 160 (163)
T 3krm_A 151 RDILAQVKQQ 160 (163)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHh
Confidence 9999986543
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=227.67 Aligned_cols=160 Identities=31% Similarity=0.540 Sum_probs=133.4
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~ 208 (669)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.. .++..+|+|+|+|+.++|++|+.+|+++|.+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT-SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 68999999999999999999999999999999999976542 45678899999999999999999999999886532111
Q ss_pred cchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHH
Q 005922 209 IVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLV 288 (669)
Q Consensus 209 ~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI 288 (669)
.. .........+++|.||.+++|+||||+|++||+|+++|||+|+|.... +.+.++.|+|+|+.++|++|++||
T Consensus 81 ~~--~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~----~~~~~~~v~I~G~~~~v~~A~~~I 154 (164)
T 2jvz_A 81 DR--NEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHAARII 154 (164)
T ss_dssp SC--SSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC----TTSSEEEEEEESCHHHHHHHHHHH
T ss_pred Cc--cccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC----CCCCcEEEEEEcCHHHHHHHHHHH
Confidence 00 000011124578999999999999999999999999999999997432 245689999999999999999999
Q ss_pred HHHHhhc
Q 005922 289 NEVISEN 295 (669)
Q Consensus 289 ~dlL~e~ 295 (669)
+++|++.
T Consensus 155 ~~~i~~~ 161 (164)
T 2jvz_A 155 NDLLQSL 161 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9999874
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.94 E-value=1.7e-27 Score=230.33 Aligned_cols=160 Identities=36% Similarity=0.634 Sum_probs=130.1
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~ 208 (669)
.+++|+||.+++|+||||+|++||+|+++|||+|+|.++ ..++++|+|+|+|+.++|++|+.+|.++|.+.......
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~ 79 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPG 79 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC---TTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCC
Confidence 689999999999999999999999999999999999754 34678899999999999999999999999886432110
Q ss_pred c----------chhcc--cCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEc
Q 005922 209 I----------VARRL--TGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDG 276 (669)
Q Consensus 209 ~----------~~rr~--~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG 276 (669)
. ....+ ......++++|.||.+++|+||||+|++||+|+++|||+|+|..+. ++..++.+++|+|+|
T Consensus 80 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~~~~~v~I~G 158 (174)
T 1j4w_A 80 GPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PPNADPNMKLFTIRG 158 (174)
T ss_dssp ------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TTTSCTTEEEEEEEC
T ss_pred CCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CCCCCCCceEEEEEC
Confidence 0 00000 0011245789999999999999999999999999999999997643 233456789999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 005922 277 TSEQIESAKQLVNEVI 292 (669)
Q Consensus 277 ~peqVq~Ak~LI~dlL 292 (669)
+.++|++|++||+++|
T Consensus 159 ~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 159 TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999975
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=227.82 Aligned_cols=156 Identities=33% Similarity=0.480 Sum_probs=133.7
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCC
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGS 207 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~ 207 (669)
.++++|+||.+.+|+||||+|++||+|+++|||+|+|+++ ++++|+|+|+|+.++|.+|+.+|.++|.++.....
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~ 78 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSM 78 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccC
Confidence 4889999999999999999999999999999999999753 46789999999999999999999999988654221
Q ss_pred CcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHH
Q 005922 208 GIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQL 287 (669)
Q Consensus 208 ~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~L 287 (669)
... ........+++|.||.+++|+||||+|++||+|+++|||+|+|..+.++ +++++.|+|+|++++|++|+++
T Consensus 79 ~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---~~~~~~v~I~G~~~~v~~A~~~ 152 (160)
T 2jzx_A 79 TNS---TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQ 152 (160)
T ss_dssp CSS---SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCST---TCCEEEEEEEECHHHHHHHHHH
T ss_pred CCC---ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCC---CCCceEEEEEcCHHHHHHHHHH
Confidence 100 0011224688999999999999999999999999999999999764433 4678999999999999999999
Q ss_pred HHHHHhh
Q 005922 288 VNEVISE 294 (669)
Q Consensus 288 I~dlL~e 294 (669)
|+++|.|
T Consensus 153 I~~~i~e 159 (160)
T 2jzx_A 153 ICVVMLE 159 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999987
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.82 E-value=9.5e-21 Score=179.07 Aligned_cols=136 Identities=19% Similarity=0.272 Sum_probs=108.7
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~ 208 (669)
++++|+||.+.||++|||+|++||.|++++|++|.... ..+++.+....+++.|.+|+.+|.
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~------~~~~~~i~~~~~p~~v~~~~~~l~------------ 65 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD------EDTCTFHIYGEDQDAVKKARSFLE------------ 65 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE------TTTTEEEEEESSHHHHHHHHHHHC------------
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC------CCchheeeccCCHHHHHHHHHhhh------------
Confidence 78999999999999999999999999999994443321 234566666678999988865331
Q ss_pred cchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCC-eEEeccCCCCCCCCCCc--cEEEEEcCHHHHHHHH
Q 005922 209 IVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGA-RIQVIPLHLPPGDTSTE--RTVQIDGTSEQIESAK 285 (669)
Q Consensus 209 ~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGA-rIqI~~~~~ppge~s~e--r~VtItG~peqVq~Ak 285 (669)
..+.+|.||.++++++|||+|++||.|++.||| +|+|..+..... ..++ +.|+|+|+.++|++|+
T Consensus 66 -----------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-~~~~~~~~vtI~G~~~~v~~Ak 133 (144)
T 2qnd_A 66 -----------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-PQEEGMVPFVFVGTKDSIANAT 133 (144)
T ss_dssp -----------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-CCCTTEEEEEEEEEHHHHHHHH
T ss_pred -----------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-cccCCeeEEEEEeCHHHHHHHH
Confidence 013789999999999999999999999999997 999986432211 1223 3589999999999999
Q ss_pred HHHHHHHhh
Q 005922 286 QLVNEVISE 294 (669)
Q Consensus 286 ~LI~dlL~e 294 (669)
.||+++|.+
T Consensus 134 ~li~~~l~~ 142 (144)
T 2qnd_A 134 VLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999976
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.74 E-value=1.9e-18 Score=173.93 Aligned_cols=143 Identities=27% Similarity=0.384 Sum_probs=109.0
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccC-----CHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMG-----TPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItG-----t~E~V~kA~~lI~elI~e~~ 203 (669)
.+++|.||..++|.|||++|++||.|+++|||+|+|+.+ ++.|+|.+ +.+.+++|+++|.++++...
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~ 105 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE--------TGEVWITSTKETEDPLAVWKARDIVLAIGRGFS 105 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT--------TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC--------CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999999733 34455554 47999999999999984321
Q ss_pred cCCCCcchhcccCCCCCcEEEEee-----CC------CceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEE
Q 005922 204 SGGSGIVARRLTGQAGSDHFAMKI-----PN------NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTV 272 (669)
Q Consensus 204 ~~~~~~~~rr~~~~~~~~t~~I~V-----P~------~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~V 272 (669)
.. ....+... ......+.| +. ..+|+||||+|++||.|++.|||+|.|. +++|
T Consensus 106 ~e----~g~~ll~d-d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~-----------~~~v 169 (219)
T 2e3u_A 106 PE----RAFRLLNE-GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY-----------GKTV 169 (219)
T ss_dssp HH----HHGGGGST-TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-----------TTEE
T ss_pred cc----ccceeccC-CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-----------CeEE
Confidence 10 00000000 001111222 22 2689999999999999999999999995 4689
Q ss_pred EEEcCHHHHHHHHHHHHHHHhhc
Q 005922 273 QIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 273 tItG~peqVq~Ak~LI~dlL~e~ 295 (669)
+|.|+.++|+.|+.+|+++|.+.
T Consensus 170 ~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 170 AIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999663
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.72 E-value=1.1e-17 Score=179.57 Aligned_cols=165 Identities=10% Similarity=0.169 Sum_probs=120.6
Q ss_pred CceEEEEeccccccceeccCC--cchhHHHhhcCcEEEEccCC--ccCCCCCCccccccCCHHHHHHHHHHHHHH-----
Q 005922 128 GTSKKIEIPNIRVGVIIGKSG--ETIKYLQLQSGAKIQVTRDT--EADLNSPTRSVELMGTPEQIAKAEQLINDV----- 198 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgG--etIK~IqeeTGAkI~Iskd~--e~~p~~~eRvVtItGt~E~V~kA~~lI~el----- 198 (669)
.++++|.||...+.+||||+| ++|++|+++|+|+|+|..+. ...+......|+|+|.+++|++|+++|.++
T Consensus 29 ~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~Pl~i 108 (376)
T 3n89_A 29 RVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTV 108 (376)
T ss_dssp EEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCEEEE
T ss_pred EEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCCceE
Confidence 499999999999999999999 99999999999999997543 111224457899999999999999999874
Q ss_pred -----------------HHhhhcCCC---------------Ccc--h--h---------------cccC----CCCCcEE
Q 005922 199 -----------------LAEAESGGS---------------GIV--A--R---------------RLTG----QAGSDHF 223 (669)
Q Consensus 199 -----------------I~e~~~~~~---------------~~~--~--r---------------r~~~----~~~~~t~ 223 (669)
|.......+ ... + . .+.. ....+++
T Consensus 109 ~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~~s~ 188 (376)
T 3n89_A 109 FMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENNFTL 188 (376)
T ss_dssp EEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSCEEE
T ss_pred EEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccceEE
Confidence 111000000 000 0 0 0001 1134678
Q ss_pred EEeeCCCceeeeecCCc--hHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHH
Q 005922 224 AMKIPNNKVGLVIGKGG--ETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292 (669)
Q Consensus 224 ~I~VP~~~vG~IIGKGG--stIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL 292 (669)
.|.|+..++..||||+| ..|++|+++|||+|.|...............|+|+|..++|+.|+++|+++|
T Consensus 189 ~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 189 HFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred EEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 89999999999999999 6679999999999999532211100123467999999999999999999988
No 9
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.68 E-value=6.8e-18 Score=163.39 Aligned_cols=139 Identities=28% Similarity=0.356 Sum_probs=106.2
Q ss_pred HHHHHHHHHHccccccCCCC-----CCCCceecCCCCCCCCccccccCCcccccCCCCCCCCC--CC-----CCCCCCCC
Q 005922 61 QAAKRRAEQIAARLCNSVSA-----EAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIP--VS-----YGGYQSMG 128 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~~~-----~~ERiisisg~~~~eav~kA~~~i~~~l~~i~~~~~~~--~s-----~g~~~~~~ 128 (669)
++|++|+++++|+|+|.+.. +.+|+++|.|. .+++.+|+.+|.+.+.......... .. .....+..
T Consensus 26 ~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~--~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (178)
T 2anr_A 26 QTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT--IEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRA 103 (178)
T ss_dssp HHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC--HHHHHHHHHHHHHHHTCCCCC-----------------CGGG
T ss_pred HHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC--HHHHHHHHHHHHHHHhccCCccccCCcccccCCccCCCCCCc
Confidence 68999999999999998532 67899999997 4567778777777665332211000 00 00011234
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+ +++..+|+|+|+|+.++|++|+.+|.++|+++
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD-GINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999986542 45677899999999999999999999999875
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-18 Score=162.68 Aligned_cols=134 Identities=25% Similarity=0.326 Sum_probs=109.4
Q ss_pred HHHHHHHHHHccccccCCCCCCCCceecCCCCCCCCccccccCCcccccC-CCCCCCCCCCCCCCCCCCceEEEEecccc
Q 005922 61 QAAKRRAEQIAARLCNSVSAEAKRPRVENGSGGFDSADKGFSSPPSDLKS-IPAPSAIPVSYGGYQSMGTSKKIEIPNIR 139 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~~~~~ERiisisg~~~~eav~kA~~~i~~~l~~-i~~~~~~~~s~g~~~~~~vt~rIlVP~~~ 139 (669)
++|++|+++++|+|+|.+..+.+|.++|.|. .+++.+|+..|.+.+.+ +..... .+. ......++++|+||..+
T Consensus 25 ~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~--~~~v~~A~~~I~~~i~e~~~~~~~--~~~-~~~~~~~~~~i~vp~~~ 99 (160)
T 2jzx_A 25 ESVKKMREESGARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEEDISSSMT--NST-AASRPPVTLRLVVPASQ 99 (160)
T ss_dssp HHHHHHHHHHCSEEEEECCTTTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHTSCCC--SSS-CCCCCSEEEEEEEEHHH
T ss_pred HHHHHHHHHHCCEEEEcCCCCCceEEEEEeC--HHHHHHHHHHHHHHHHhhccccCC--CCc-cCCCCCEEEEEEEChhh
Confidence 6899999999999999987788999999997 55677888877766542 211111 000 01123489999999999
Q ss_pred ccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHh
Q 005922 140 VGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 140 vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e 201 (669)
+|+||||+|++||+|+++|||+|+|.++. .+++.+++|+|+|+.++|++|+++|+++|.|
T Consensus 100 ~g~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 100 CGSLIGKGGCKIKEIRESTGAQVQVAGDM--LPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEECCCCCC--STTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eeeEECCCCHHHHHHHHHhCCeEEECCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998653 5678899999999999999999999999987
No 11
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.66 E-value=5.5e-17 Score=160.03 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=111.2
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCcccccc-----CCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELM-----GTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtIt-----Gt~E~V~kA~~lI~elI~e~~ 203 (669)
..++++||..++|.|||++|+++|.|+++++++|+|+.. ++.|+|. ++++.+.+|.++|.+++....
T Consensus 4 ~~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~--------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 4 PRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE--------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp CCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT--------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred cceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 457999999999999999999999999999999999632 4555555 999999999999999887543
Q ss_pred cCCCCcchhcccCCCCCcEEEEeeC----------CCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEE
Q 005922 204 SGGSGIVARRLTGQAGSDHFAMKIP----------NNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQ 273 (669)
Q Consensus 204 ~~~~~~~~rr~~~~~~~~t~~I~VP----------~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~Vt 273 (669)
... ..++.. .......|.|. ...+|+||||+|.+||.|++.|||+|.|. +++|+
T Consensus 76 ~e~----A~~Ll~-Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~-----------~~~v~ 139 (191)
T 1tua_A 76 PEK----AFRLLE-EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG-----------EYEVA 139 (191)
T ss_dssp HHH----HGGGGS-TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC-----------SSEEE
T ss_pred HHH----hhhccc-CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc-----------CCEEE
Confidence 210 001111 00011122232 23589999999999999999999999995 35999
Q ss_pred EEcCHHHHHHHHHHHHHHHhh
Q 005922 274 IDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 274 ItG~peqVq~Ak~LI~dlL~e 294 (669)
|.|+.+.|+.|+..|+++|..
T Consensus 140 i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 140 IIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEHHHHHHHHHHHHHHHTT
T ss_pred EEeChHHHHHHHHHHHHHHcC
Confidence 999999999999999999975
No 12
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-17 Score=154.80 Aligned_cols=136 Identities=24% Similarity=0.389 Sum_probs=106.8
Q ss_pred HHHHHHHHHHccccccCCC----CCCCCceecCCCCCCCCccccccCCcccccCCCCC-CCCCCCCCCCCCCCceEEEEe
Q 005922 61 QAAKRRAEQIAARLCNSVS----AEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAP-SAIPVSYGGYQSMGTSKKIEI 135 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~~----~~~ERiisisg~~~~eav~kA~~~i~~~l~~i~~~-~~~~~s~g~~~~~~vt~rIlV 135 (669)
++||+|+++++|+|.|... .+.+|+++|.|. .+++.+|+..|.+.+.+.... ......++. ...++++|+|
T Consensus 22 ~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~--~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~--~~~~~~~i~v 97 (164)
T 2jvz_A 22 ETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD--PYKVQQACEMVMDILRERDQGGFGDRNEYGS--RIGGGIDVPV 97 (164)
T ss_dssp HHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC--HHHHHHHHHHHHHHTTCSSSCCCSSCSSCTT--SCSSSBCCEE
T ss_pred HHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC--HHHHHHHHHHHHHHHHhccCCCCCCccccCC--CCCceEEEEE
Confidence 6899999999999999743 256899999996 556778888777776643211 111111221 1135789999
Q ss_pred ccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 136 PNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 136 P~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
|..++|+||||+|++||+|+++|||+|+|.++. .+..+|+|+|+|+.++|++|+.+|.++|++..
T Consensus 98 p~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 98 PRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp ETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998653 35568999999999999999999999998754
No 13
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.64 E-value=4.5e-17 Score=155.35 Aligned_cols=132 Identities=23% Similarity=0.246 Sum_probs=106.4
Q ss_pred HHHHHHHHHHccccccCCC---CCCCCceecCCCCCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 005922 61 QAAKRRAEQIAARLCNSVS---AEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAPSAIPVSYGGYQSMGTSKKIEIPN 137 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~~---~~~ERiisisg~~~~eav~kA~~~i~~~l~~i~~~~~~~~s~g~~~~~~vt~rIlVP~ 137 (669)
++|++|+++++|+|+|.+. .+.+|+++|.|. .+++.+|+..|.+.+...... ....+..++.+|+||.
T Consensus 23 ~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~--~e~v~~A~~~I~~~~~e~~~~-------~~~~~~~~~~~i~vp~ 93 (163)
T 3krm_A 23 QHIKQLSRFASASIKIAPPETPDSKVRMVIITGP--PEAQFKAQGRIYGKLKEENFF-------GPKEEVKLETHIRVPA 93 (163)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC--HHHHHHHHHHHHHHHHHTTSS-------CSSCCCCEEEEEEEET
T ss_pred HHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC--HHHHHHHHHHHHHHHhccccc-------ccccCCceEEEEEcCh
Confidence 6899999999999999974 358899999996 566777877777766522100 0112234788999999
Q ss_pred ccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCC-ccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 138 IRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPT-RSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 138 ~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~e-RvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
..+|+||||+|++||+|+++|||+|+|.++. .++..+ ++|+|+|+.++|++|+.+|+++|++..
T Consensus 94 ~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 94 SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ--TPDENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp TTHHHHHCGGGHHHHHHHHHHCCEEECCTTC--CCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred hheeeEEcCCChHHHHHHHHhCCeEEECCCC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998654 344444 489999999999999999999999854
No 14
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.62 E-value=3.5e-17 Score=158.00 Aligned_cols=137 Identities=27% Similarity=0.365 Sum_probs=102.8
Q ss_pred HHHHHHHHHHccccccCC--CCCCCCceecCCCCCCCCccccccCCcccccCCCCC-CCCC-----------CCCC-CCC
Q 005922 61 QAAKRRAEQIAARLCNSV--SAEAKRPRVENGSGGFDSADKGFSSPPSDLKSIPAP-SAIP-----------VSYG-GYQ 125 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~--~~~~ERiisisg~~~~eav~kA~~~i~~~l~~i~~~-~~~~-----------~s~g-~~~ 125 (669)
++||+|+++++|+|+|.. ..+.+|+++|.|. .+++.+|+.+|.+.+...... .... ..+. ...
T Consensus 23 ~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~--~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 100 (174)
T 1j4w_A 23 EMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP--PDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPP 100 (174)
T ss_dssp HHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC--HHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred hHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCC
Confidence 689999999999999974 3467899999997 556778877776665422100 0000 0000 001
Q ss_pred CCCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHH
Q 005922 126 SMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199 (669)
Q Consensus 126 ~~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI 199 (669)
+..++++|+||..++|+||||+|++||+|+++|||+|+|.++.....+..+|+|+|+|+.++|++|+.+|+++|
T Consensus 101 ~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 101 GGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ---CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 12368999999999999999999999999999999999987643334577899999999999999999999875
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=133.69 Aligned_cols=74 Identities=35% Similarity=0.586 Sum_probs=65.8
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcc
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~ 296 (669)
+++|+||.++|++||||+|++||+|+++|||+|+|..+..+ ..+..+++|+|+|+.++|++|++||+++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 68999999999999999999999999999999999765332 234568999999999999999999999998864
No 16
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-15 Score=131.82 Aligned_cols=74 Identities=31% Similarity=0.547 Sum_probs=64.5
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcccC
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENRIR 298 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~~r 298 (669)
.+++|+||.+++++||||+|++||+|+++|+|+|+|..+. .+..||+|+|+|++++|++|++||+++|++....
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC----CCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 4689999999999999999999999999999999997432 2456899999999999999999999999986543
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=5.2e-15 Score=124.51 Aligned_cols=73 Identities=29% Similarity=0.448 Sum_probs=67.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e 201 (669)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..++..+|+|+|+|+.++|++|+.+|.++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999875556778899999999999999999999999876
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=1.3e-14 Score=125.61 Aligned_cols=75 Identities=29% Similarity=0.450 Sum_probs=69.8
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
++++|+||.+.+|+||||+|++||+|+++|||+|+|.++.+..++..+|+|+|+|+.++|++|+.+|+++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999976555678889999999999999999999999998854
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.50 E-value=8.1e-15 Score=123.06 Aligned_cols=70 Identities=36% Similarity=0.549 Sum_probs=65.0
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
.++++|+||.+.+|+||||+|++||+|+++|||+|+|+++ ++++|+|+|+|+.++|.+|+.+|.++|+|+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 3899999999999999999999999999999999999854 467999999999999999999999999874
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.50 E-value=2e-14 Score=123.07 Aligned_cols=73 Identities=30% Similarity=0.460 Sum_probs=67.2
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|+++ .++..+|+|+|+|+.++|++|+.+|+++|++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 34899999999999999999999999999999999999754 35678899999999999999999999999874
No 21
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=129.95 Aligned_cols=75 Identities=27% Similarity=0.505 Sum_probs=67.2
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
.+++|+||.++||+||||+|++||+|+++|||+|+|.++.+...+..+|+|+|+|+.|+|++|+++|+++|++..
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 378999999999999999999999999999999999876533345678999999999999999999999998754
No 22
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.48 E-value=3.9e-14 Score=123.99 Aligned_cols=74 Identities=34% Similarity=0.650 Sum_probs=66.3
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~ 296 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|..+. +...+|+|+|+|++++|++|++||+++|++.+
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS----GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 356789999999999999999999999999999999997532 24568999999999999999999999999864
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=2.5e-14 Score=120.05 Aligned_cols=70 Identities=27% Similarity=0.487 Sum_probs=63.7
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
..+++|+||.+++|.||||+|++||+|+++|||+|+|..+ +..+|+|+|+|++++|++|++||+++|+|+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999743 346899999999999999999999999874
No 24
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.48 E-value=2.7e-14 Score=125.00 Aligned_cols=75 Identities=36% Similarity=0.611 Sum_probs=68.1
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.++. .+..+|+|+|+|+.++|++|+.+|+++|++...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 348999999999999999999999999999999999998653 356789999999999999999999999998643
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.48 E-value=6.3e-14 Score=120.02 Aligned_cols=72 Identities=31% Similarity=0.522 Sum_probs=64.6
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
..+++|.||.+++|+||||+|++||+|+++|||+|+|... ..++++|.|+|+|++++|++|++||+++|++.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999642 12456899999999999999999999999873
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=1.8e-14 Score=123.37 Aligned_cols=72 Identities=33% Similarity=0.523 Sum_probs=65.5
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.++ .++..+|+|+|+|+.++|++|+.+|.++|.++
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4889999999999999999999999999999999999864 35678999999999999999999999999875
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=121.51 Aligned_cols=72 Identities=35% Similarity=0.511 Sum_probs=66.7
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.++|++|+.+|.++|+++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3889999999999999999999999999999999999863 46778999999999999999999999999864
No 28
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=4.1e-14 Score=121.10 Aligned_cols=72 Identities=31% Similarity=0.542 Sum_probs=63.9
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
.++++|+||.+++|+||||+|++||+|+++|||+|+|... .+.+.++.|+|+|++++|++|++||+++|+++
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999742 23567999999999999999999999999875
No 29
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.46 E-value=6.4e-14 Score=117.85 Aligned_cols=73 Identities=32% Similarity=0.483 Sum_probs=63.5
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
++++|.||.+++|+||||+|++||+|+++|||+|+|..+.. ....+.++.|+|+|++++|++|+.||+++|++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-FLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTC-CSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCC-CCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999975421 11245689999999999999999999999865
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=127.32 Aligned_cols=74 Identities=36% Similarity=0.658 Sum_probs=66.1
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESG 205 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~ 205 (669)
.+++|+||.+++++||||+|+|||+|+++|+|+|+|+++. .+.++|+|+|+|+.|+|++|+++|+++|++....
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 5799999999999999999999999999999999998653 3567899999999999999999999999987543
No 31
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=119.08 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=64.9
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
.++++|.||.+++|+||||+|++||+|+++|||+|+|... ...+.++.|+|+|++++|++|+.||+++|++.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 4578999999999999999999999999999999999742 23567999999999999999999999999864
No 32
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.46 E-value=2.5e-14 Score=124.48 Aligned_cols=73 Identities=30% Similarity=0.460 Sum_probs=67.3
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|+.++|++|+++|+++|++.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999754 45678999999999999999999999999874
No 33
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=118.21 Aligned_cols=73 Identities=34% Similarity=0.586 Sum_probs=64.5
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
...++|.||.+++|+||||+|++||+|+++|||+|.|..+... ....+|.|+|+|++++|++|++||+++|+|
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999999764321 245689999999999999999999999864
No 34
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.44 E-value=8e-14 Score=122.48 Aligned_cols=75 Identities=37% Similarity=0.646 Sum_probs=66.3
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
+.++++|+||.+++++||||+|++||+|+++|||+|+|..+... ...++|.|+|+|++++|++|++||+++|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ--NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC--SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999754321 2346899999999999999999999999874
No 35
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.43 E-value=4.5e-14 Score=124.11 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=67.9
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.++.. .....+|+|+|+|+.++|++|+++|+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 4489999999999999999999999999999999999987642 124578999999999999999999999998754
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=119.33 Aligned_cols=72 Identities=33% Similarity=0.595 Sum_probs=65.6
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e 201 (669)
.+++|+||.+++|+||||+|++||+|+++|||+|+|.++.. .....+|+|+|+|+++.|++|+.+|+++++|
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999987542 3467789999999999999999999999864
No 37
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-14 Score=121.51 Aligned_cols=70 Identities=29% Similarity=0.472 Sum_probs=62.3
Q ss_pred CCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 218 AGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 218 ~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
.+..+++|.||.+++|+||||+|++||+|+++|||+|+|..+ .++++|+|+|++++|++|++||+++|..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 345788999999999999999999999999999999999631 2368999999999999999999998765
No 38
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.42 E-value=7.5e-14 Score=121.39 Aligned_cols=72 Identities=31% Similarity=0.522 Sum_probs=64.6
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
.++++|.||.+++++||||+|++||+|+++|||+|+|... ..++++|.|+|+|++++|++|++||+++|++.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC----CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC----CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999642 12456899999999999999999999999873
No 39
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=1.4e-13 Score=118.96 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=65.3
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcc
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~ 296 (669)
++++|.||.+++|+||||+|++||+|+++|||+|+|..+.. ....+.++.|+|+|++++|++|+.||+++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-FLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTC-BSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999975321 1124568999999999999999999999998743
No 40
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.2e-14 Score=120.48 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=62.9
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.+.. .+++|+|+|+.++|++|+.+|++++...
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999999999999997532 2689999999999999999999987753
No 41
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=2.8e-13 Score=121.18 Aligned_cols=75 Identities=32% Similarity=0.530 Sum_probs=65.1
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
...+++|+||.+++|+||||+|++||+|+++|||+|+|..... ...+.++.|+|+|+.++|++|++||+++|+++
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE--GTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC--CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC--CCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 3567899999999999999999999999999999999975321 11245899999999999999999999999774
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=1.8e-13 Score=122.38 Aligned_cols=74 Identities=34% Similarity=0.546 Sum_probs=66.1
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+. ....+|+|+|+|+.++|++|+.+|+++|.++.
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 789999999999999999999999999999999999865421 13468999999999999999999999998754
No 43
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=9.3e-13 Score=115.76 Aligned_cols=72 Identities=32% Similarity=0.540 Sum_probs=64.9
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
.++++|.||.+++|+||||+|++||+|+++|||+|+|++. +..++.|+|+|+.++|++|+.+|++++.+...
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP-----DDPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT-----TSSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC-----CCCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 3899999999999999999999999999999999999743 23458999999999999999999999988654
No 44
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.4e-12 Score=115.47 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=66.9
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
++++|.||..++++||||+|++||+|+++|||+|+|.++. .++..+|.|+|+|+.++|++|+.+|++++.+...
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g--~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD--DGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTT--TCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCC--CCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999998654 2345789999999999999999999999987543
No 45
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=2.4e-12 Score=113.86 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=63.8
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
..++.|.||.++++.||||+|++||+|+++|||+|+|..+.. .+..++.|+|+|+.++|++|+.+|++++.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~---~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD---GNQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT---CSSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999964321 1235789999999999999999999999773
No 46
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.2e-12 Score=113.37 Aligned_cols=72 Identities=28% Similarity=0.457 Sum_probs=63.7
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~ 296 (669)
..++++|.||.++++.|||++|++||+|+++|||+|.|... ++.++.|+|+|+.++|++|++||++++++..
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~------~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP------DDPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT------TSSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC------CCCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 35678999999999999999999999999999999999532 2336799999999999999999999998854
No 47
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.31 E-value=1.5e-12 Score=108.78 Aligned_cols=67 Identities=19% Similarity=0.366 Sum_probs=60.0
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHH
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVI 292 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL 292 (669)
..+.+|.||.++++.|||++|++||+|+++|||+|.|..+ ...++.|+|+|+.+.|++|+++|++++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999632 235689999999999999999999875
No 48
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=4.7e-12 Score=111.69 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
..++++|.||.++++.|||++|++||+|+++|||+|+|..+ + +..++.|+|+|.+++|++|+++|++++++.
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~----g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS----G-APDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT----T-CSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC----C-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999532 1 234789999999999999999999999874
No 49
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=4.2e-12 Score=111.97 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=65.6
Q ss_pred CceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 128 GTSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 128 ~vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
.++++|.||..++++||||+|++||+|+++|||+|+|.++. ...+|.|+|+|+.++|++|+++|++++++...
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG----APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999997542 23578999999999999999999999988653
No 50
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=2.7e-13 Score=121.19 Aligned_cols=89 Identities=16% Similarity=0.317 Sum_probs=76.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHH-hCCeEEecc
Q 005922 180 ELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQAR-TGARIQVIP 258 (669)
Q Consensus 180 tItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~-TGArIqI~~ 258 (669)
.|+|++++|.+|+.+|.+++.+ .++.+|.||..+++.|||++|++||+|+++ ++++|.|..
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~~------------------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~ 65 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKANS------------------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE 65 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCCC------------------CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS
T ss_pred ccCcCHHHHHHHHHHHHHHhcC------------------eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC
Confidence 5788888888888888765532 257899999999999999999999999997 589999842
Q ss_pred CCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhc
Q 005922 259 LHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISEN 295 (669)
Q Consensus 259 ~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~ 295 (669)
.++.|+|+|+++.|++|+.+|+++|++.
T Consensus 66 ---------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 ---------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp ---------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999874
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.26 E-value=1.8e-12 Score=108.25 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=60.7
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHH
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVL 199 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI 199 (669)
+++.|.||.+++|+||||+|++||+|+++|||+|+|.++. ..+|.|+|+|+.++|++|+.+|++++
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999998643 36789999999999999999999874
No 52
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=6.3e-12 Score=112.60 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=63.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
+++.|.||.+++|+|||++|++||+|+++|||+|+|.++. ...+.|+|+|+.++|++|+.+|++++++..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 7899999999999999999999999999999999998543 235689999999999999999999998754
No 53
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=9.2e-12 Score=111.54 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=61.7
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
..+..|.||.++++.|||++|++||+|+++|||+|.|..+ ....+.|+|+|+.++|++|+++|++++++
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP------ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT------TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999632 22356999999999999999999999876
No 54
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=1.9e-11 Score=109.17 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=74.2
Q ss_pred ecCCCCCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCceEEEEeccccccceeccCCcchhHHHhh-cCcEEEEc
Q 005922 87 VENGSGGFDSADKGFSSPPSDLKSIPAPSAIPVSYGGYQSMGTSKKIEIPNIRVGVIIGKSGETIKYLQLQ-SGAKIQVT 165 (669)
Q Consensus 87 sisg~~~~eav~kA~~~i~~~l~~i~~~~~~~~s~g~~~~~~vt~rIlVP~~~vG~IIGKgGetIK~Iqee-TGAkI~Is 165 (669)
.+.|+ .+++.+|+..+.+.+... ++.+|.||..++++||||+|++||+|+++ ++++|+|.
T Consensus 4 ~i~G~--~~~V~~A~~~i~~~~~~~-----------------~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp 64 (102)
T 2ctf_A 4 GSSGE--PEKLGQALTEVYAKANSF-----------------TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFT 64 (102)
T ss_dssp CCCCC--CCCCCCSCCCCCCCCCCC-----------------EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEEC
T ss_pred ccCcC--HHHHHHHHHHHHHHhcCe-----------------EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeC
Confidence 34565 455667776666554311 78999999999999999999999999997 58999997
Q ss_pred cCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 166 RDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 166 kd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
+ .+++|+|+|.++.|++|+.+|++++++..
T Consensus 65 ~--------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 65 E--------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp S--------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred C--------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 4 35789999999999999999999998754
No 55
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.14 E-value=5.7e-12 Score=118.95 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=61.1
Q ss_pred eEEEEeccccccceeccCCcchhHHHhhcCc-EEEEccCCccCCCCCCc--cccccCCHHHHHHHHHHHHHHHHh
Q 005922 130 SKKIEIPNIRVGVIIGKSGETIKYLQLQSGA-KIQVTRDTEADLNSPTR--SVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 130 t~rIlVP~~~vG~IIGKgGetIK~IqeeTGA-kI~Iskd~e~~p~~~eR--vVtItGt~E~V~kA~~lI~elI~e 201 (669)
..+|.||.+.+|++|||+|+|||.|++.||| +|+|..+.+......++ .|+|+|+.++|++|+.+|+++|.+
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3889999999999999999999999999997 99998754322222333 489999999999999999999975
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=9.5e-11 Score=103.42 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=63.8
Q ss_pred CCcEEEEeeCCCceeeeecCCchHHHHHHHHh-CCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhhcc
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGGETIKNMQART-GARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISENR 296 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~T-GArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e~~ 296 (669)
..++..|.||.++++.|||++|++||+|+++| ||+|.|..+ .+..+.|+|+|+.+.|++|+++|++++++..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT------TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 45688999999999999999999999999999 999999532 3446799999998899999999999998743
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=9.5e-11 Score=103.42 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=64.9
Q ss_pred CCceEEEEeccccccceeccCCcchhHHHhhc-CcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 127 MGTSKKIEIPNIRVGVIIGKSGETIKYLQLQS-GAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 127 ~~vt~rIlVP~~~vG~IIGKgGetIK~IqeeT-GAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
..+++.|.||.++++.|||++|++||+|+++| ||+|+|.++ +...+.|+|+|..+.|++|+++|++++.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-----GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-----TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 34789999999999999999999999999999 999999754 3456789999999999999999999998754
No 58
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=2.5e-09 Score=98.04 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=58.8
Q ss_pred cEEEEeeCC-------CceeeeecCCchHHHHHHHHhCCeEEeccCCCC------CCCCCCccEEEEEcC-HHHHHHHHH
Q 005922 221 DHFAMKIPN-------NKVGLVIGKGGETIKNMQARTGARIQVIPLHLP------PGDTSTERTVQIDGT-SEQIESAKQ 286 (669)
Q Consensus 221 ~t~~I~VP~-------~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~p------pge~s~er~VtItG~-peqVq~Ak~ 286 (669)
.+.+|.||. ++++.|||++|++||+|+++|||+|.|.++... ..+..++-.|.|++. .+.|++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 455666664 488999999999999999999999999754211 111234568999987 999999999
Q ss_pred HHHHHHhhc
Q 005922 287 LVNEVISEN 295 (669)
Q Consensus 287 LI~dlL~e~ 295 (669)
||++||.+.
T Consensus 92 ~Ie~Ll~~v 100 (119)
T 2yqr_A 92 LCENLLQTV 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 999999874
No 59
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=4.4e-09 Score=97.96 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=61.8
Q ss_pred CcEEEEeeCCC------ceeeeecCCchHHHHHHHHhCCeEEeccCCCC------------CCCCCCccEEEEEcC-HHH
Q 005922 220 SDHFAMKIPNN------KVGLVIGKGGETIKNMQARTGARIQVIPLHLP------------PGDTSTERTVQIDGT-SEQ 280 (669)
Q Consensus 220 ~~t~~I~VP~~------~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~p------------pge~s~er~VtItG~-peq 280 (669)
..+.+|.||.+ ++|+|||++|++||+|+++|||+|.|.++..- ..+..++-.|.|+++ .+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 45778999987 89999999999999999999999999764210 011234678999997 899
Q ss_pred HHHHHHHHHHHHhh
Q 005922 281 IESAKQLVNEVISE 294 (669)
Q Consensus 281 Vq~Ak~LI~dlL~e 294 (669)
|++|+++|+++|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 60
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.85 E-value=3.8e-10 Score=113.54 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccccccCCCCCCCCceecCCCC---CCCCccccccCCcccccCCC-CCCCCCCCCCCCCCCCceEEEEec
Q 005922 61 QAAKRRAEQIAARLCNSVSAEAKRPRVENGSG---GFDSADKGFSSPPSDLKSIP-APSAIPVSYGGYQSMGTSKKIEIP 136 (669)
Q Consensus 61 e~IkkIaeEtaARI~I~~~~~~ERiisisg~~---~~eav~kA~~~i~~~l~~i~-~~~~~~~s~g~~~~~~vt~rIlVP 136 (669)
++|+.|.++++++|+|... ++.+.|.+.. +.+++.+|...|...+.... ..+..+.. +..+...|.|.
T Consensus 54 k~Ik~I~e~tgvkI~I~~~---~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~-----dd~~~e~i~i~ 125 (219)
T 2e3u_A 54 QTKKEIEKRTKTKITIDSE---TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN-----EGEYLEIINLT 125 (219)
T ss_dssp HHHHHHHHHHTEEEEECTT---TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGS-----TTCEEEEEEGG
T ss_pred HHHHHHHHHHCcEEEEEcC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceecc-----CCccceeEEcc
Confidence 7999999999999999832 4556666542 23446666666554431000 00000000 11122333333
Q ss_pred c-----------ccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 137 N-----------IRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 137 ~-----------~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
. ..+|+||||+|+|||.|++.|||+|.|. ++.|+|.|+.++|+.|+.+|+++|...
T Consensus 126 ~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~----------~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 126 DIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY----------GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp GCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 2 2699999999999999999999999996 256999999999999999999999663
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.80 E-value=1e-09 Score=96.03 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=58.4
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCe-EEeccCCCCCCCCCCccEEEEEc-CHHHHHHHHHHHHHHHhh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGAR-IQVIPLHLPPGDTSTERTVQIDG-TSEQIESAKQLVNEVISE 294 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGAr-IqI~~~~~ppge~s~er~VtItG-~peqVq~Ak~LI~dlL~e 294 (669)
.....|.||.++++.|||++|++||+|+++|||+ |.|. +++.+|+|.| +.+++++|++||+.+.+.
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------eddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD---------EDTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE---------cCCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 4567899999999999999999999999999998 9995 2358999999 599999999999876554
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=1.3e-09 Score=95.47 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=56.0
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcE-EEEccCCccCCCCCCccccccC-CHHHHHHHHHHHHHH
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAK-IQVTRDTEADLNSPTRSVELMG-TPEQIAKAEQLINDV 198 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAk-I~Iskd~e~~p~~~eRvVtItG-t~E~V~kA~~lI~el 198 (669)
+.+.|.||.+++|.|||++|.+||+|+++|||+ |.|..+ +..|+|+| +.|.+++|+++|+.+
T Consensus 15 ~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed--------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED--------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred eEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC--------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999998 999632 36799999 899999999988754
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=5.1e-09 Score=96.00 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=59.1
Q ss_pred ceEEEEeccc-------cccceeccCCcchhHHHhhcCcEEEEccCCc--------cCCCCCCccccccCCHHHHHHHHH
Q 005922 129 TSKKIEIPNI-------RVGVIIGKSGETIKYLQLQSGAKIQVTRDTE--------ADLNSPTRSVELMGTPEQIAKAEQ 193 (669)
Q Consensus 129 vt~rIlVP~~-------~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e--------~~p~~~eRvVtItGt~E~V~kA~~ 193 (669)
++.||.||.+ ++|+|||++|.|||+|+++|||+|.|..... ...+.+.+|++...+.+.|++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 7889998876 5999999999999999999999999962210 011233466666678999999999
Q ss_pred HHHHHHHhh
Q 005922 194 LINDVLAEA 202 (669)
Q Consensus 194 lI~elI~e~ 202 (669)
+|++||.+.
T Consensus 92 ~Ie~Ll~~v 100 (119)
T 2yqr_A 92 LCENLLQTV 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 999999874
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.75 E-value=7.1e-09 Score=96.56 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=58.5
Q ss_pred ceEEEEeccc------cccceeccCCcchhHHHhhcCcEEEEccCCc--------------cCCCCCCccccccCCHHHH
Q 005922 129 TSKKIEIPNI------RVGVIIGKSGETIKYLQLQSGAKIQVTRDTE--------------ADLNSPTRSVELMGTPEQI 188 (669)
Q Consensus 129 vt~rIlVP~~------~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e--------------~~p~~~eRvVtItGt~E~V 188 (669)
++.+|.||.+ ++|+|||.+|.|||+|+++|||+|.|..... ...+.+..|++..-+.+.|
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 7899999988 8999999999999999999999999964210 0011233444444579999
Q ss_pred HHHHHHHHHHHHhh
Q 005922 189 AKAEQLINDVLAEA 202 (669)
Q Consensus 189 ~kA~~lI~elI~e~ 202 (669)
++|+++|++||.+.
T Consensus 87 ~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 87 KKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999874
No 65
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.64 E-value=1.2e-08 Score=109.73 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=61.2
Q ss_pred CCcEEEEeeCCCceeeeecCCc--hHHHHHHHHhCCeEEeccCCC-CCCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 005922 219 GSDHFAMKIPNNKVGLVIGKGG--ETIKNMQARTGARIQVIPLHL-PPGDTSTERTVQIDGTSEQIESAKQLVNEV 291 (669)
Q Consensus 219 ~~~t~~I~VP~~~vG~IIGKGG--stIK~Iqe~TGArIqI~~~~~-ppge~s~er~VtItG~peqVq~Ak~LI~dl 291 (669)
..++++|.||..++..||||+| ++|++|+++|+|+|+|..+.. .....+....|+|+|.++.|++|+.+|.++
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 4678999999999999999999 999999999999999954320 001124457899999999999999999985
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.48 E-value=1e-07 Score=89.63 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=56.5
Q ss_pred EEEEeeCC------CceeeeecCCchHHHHHHHHhCCeEEeccCCCCC---------C-----CCCCccEEEEEcC-HH-
Q 005922 222 HFAMKIPN------NKVGLVIGKGGETIKNMQARTGARIQVIPLHLPP---------G-----DTSTERTVQIDGT-SE- 279 (669)
Q Consensus 222 t~~I~VP~------~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~pp---------g-----e~s~er~VtItG~-pe- 279 (669)
+.+|.||. +++|+|||++|++||+|+++|||+|.|.++.... + +..++-.|.|++. .+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 45666764 5699999999999999999999999998753210 0 1233457889986 43
Q ss_pred ----HHHHHHHHHHHHHhhc
Q 005922 280 ----QIESAKQLVNEVISEN 295 (669)
Q Consensus 280 ----qVq~Ak~LI~dlL~e~ 295 (669)
.|++|+++|+++|..+
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHHCCCC
Confidence 7999999999999753
No 67
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=107.28 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=55.8
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVNEVIS 293 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~dlL~ 293 (669)
...+.|.||.++++.|||+||++||.|+++|||+|.|. ++..|.|.+. .+.+++|+++|+++++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------d~G~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV----------DEETFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC----------SSSEEEEEESSHHHHHHHHHHTTC---
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc----------CCcEEEEEeCCHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999994 2579999998 7899999999998763
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.32 E-value=2.3e-07 Score=87.24 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=53.8
Q ss_pred ceEEEEecccc------ccceeccCCcchhHHHhhcCcEEEEccCCcc----------------CCCCCCccccccC-CH
Q 005922 129 TSKKIEIPNIR------VGVIIGKSGETIKYLQLQSGAKIQVTRDTEA----------------DLNSPTRSVELMG-TP 185 (669)
Q Consensus 129 vt~rIlVP~~~------vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~----------------~p~~~eRvVtItG-t~ 185 (669)
++.||.||.+. +|+|||.+|.|||+|+++|||+|.|...... ..+.+..|+ |++ +.
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~-Isa~~~ 80 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL-ITVEDA 80 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEE-EEECSC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEE-EEecCc
Confidence 67899999766 9999999999999999999999999642200 012223433 444 33
Q ss_pred H-----HHHHHHHHHHHHHHh
Q 005922 186 E-----QIAKAEQLINDVLAE 201 (669)
Q Consensus 186 E-----~V~kA~~lI~elI~e 201 (669)
+ .|++|+++|+++|..
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHHCCC
Confidence 3 799999999999864
No 69
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.14 E-value=1.7e-06 Score=85.35 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=58.4
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEE-----cCHHHHHHHHHHHHHHHhh
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQID-----GTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtIt-----G~peqVq~Ak~LI~dlL~e 294 (669)
++++.||.+.+|.|||++|+++|.|+++++|+|+|. ..++.|+|. |++..+.+|++||..++..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id---------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD---------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE---------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE---------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999995 347888988 9999999999999888764
No 70
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.98 E-value=3.2e-06 Score=97.91 Aligned_cols=65 Identities=26% Similarity=0.539 Sum_probs=13.1
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHhh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVNEVISE 294 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~dlL~e 294 (669)
+....|.||.++++.|||+||++||.|+++||++|.|. ++..|.|.+. .+.+++|+++|+.++.+
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN----------DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CC-----------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE----------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 44578899999999999999999999999999999984 2568888888 89999999999999876
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.85 E-value=2.1e-05 Score=73.23 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=60.5
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
.-+.+.|...+++.|||++|+.|++|+..|.+.|+|+.- +.+.+-.|+|.|++..=.+|+.||+.+++-
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-----CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999742 334577899999999999999999988764
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.80 E-value=6.4e-06 Score=77.81 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=75.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSG 208 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~ 208 (669)
-...|+|....+|..||++|++||.|++++|-+|.|-...+ + -..+|...|.-......
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~--------------d------~~~fI~naLsPA~V~~V- 94 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS--------------D------LERIVKNLFPGVKIESI- 94 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS--------------S------HHHHHHHHSTTSCEEEE-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC--------------C------HHHHHHHhcCCceEEEE-
Confidence 46889999999999999999999999999999998854321 1 22233333332111000
Q ss_pred cchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEec
Q 005922 209 IVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVI 257 (669)
Q Consensus 209 ~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~ 257 (669)
.-.+. .+.....+.|+.+..++.|||+|.||+-..+.||.+|.|.
T Consensus 95 --~i~~~--~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 95 --NVRER--NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp --EEEEE--TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred --EEeec--CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000 1235678899999999999999999999999999998875
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.74 E-value=8.6e-06 Score=93.23 Aligned_cols=63 Identities=19% Similarity=0.441 Sum_probs=53.2
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccC-CHHHHHHHHHHHHHHHH
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMG-TPEQIAKAEQLINDVLA 200 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItG-t~E~V~kA~~lI~elI~ 200 (669)
..+.|.||.++++.|||+||++||+|+++|||+|.|.++ -.|.|.+ +.+.+++|+++|+++++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~---------G~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE---------ETFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS---------SEEEEEESSHHHHHHHHHHTTC---
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC---------cEEEEEeCCHHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999999999999733 3466666 57899999999988763
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.43 E-value=0.00017 Score=67.24 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=61.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
..+.|.|....++.|||++|+.|+.|+..|.+.|+|++-. + +.+-.|+|.|+...-.+|+.+|.+++.-.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~---s-~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG---P-ERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC---T-TSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC---C-CCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999999998642 2 35678999999999999999999987654
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.33 E-value=5.1e-05 Score=88.02 Aligned_cols=68 Identities=25% Similarity=0.373 Sum_probs=12.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
....|.||.++++.|||+||.+||.|+++||++|.|..+ .++.+...+.+.+++|+++|+.++.+...
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd--------G~v~I~~~~~~~~~~A~~~i~~i~~~~~v 637 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD--------GVVKVSASDGAKIKAAIDWIKSITDEAEV 637 (726)
T ss_dssp C---------------------------------------------------CCSCHHHHHHHHHC----------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC--------ceEEEEeCCHHHHHHHHHHHHHHhhhhcC
Confidence 567889999999999999999999999999999999633 23444455799999999999999876543
No 76
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.14 E-value=0.00014 Score=84.42 Aligned_cols=65 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred CcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHhh
Q 005922 220 SDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVNEVISE 294 (669)
Q Consensus 220 ~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~dlL~e 294 (669)
+..+.|.|+.++++.|||++|.+||.|.++||+.|.|. ++..|+|... .+.+++|+++|+.++.+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE----------DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec----------CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999884 2568888887 77889999999888755
No 77
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.83 E-value=0.00012 Score=85.42 Aligned_cols=62 Identities=31% Similarity=0.491 Sum_probs=23.1
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHH
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVNEVI 292 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~dlL 292 (669)
....|.||.++++.|||++|++||.|+++||+.|.|. .+..|+|+.. .+.+++|+++|+.++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEec----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999984 1578999888 788888988888876
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.74 E-value=0.00064 Score=69.46 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=66.7
Q ss_pred cccceeccCCcchhHH-HhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCC
Q 005922 139 RVGVIIGKSGETIKYL-QLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQ 217 (669)
Q Consensus 139 ~vG~IIGKgGetIK~I-qeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~ 217 (669)
-+|..||++|.+|+.| ++..|-+|.|-...+ + ...+|...|.-....... .. .
T Consensus 127 pvGacIG~~G~rI~~i~~eL~gekIDIi~~s~--------------d------p~~fi~nalsPA~V~~V~-----i~-~ 180 (251)
T 2asb_A 127 AKGACIGPMGQRVRNVMSELSGEKIDIIDYDD--------------D------PARFVANALSPAKVVSVS-----VI-D 180 (251)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS--------------S------HHHHHHHHTTTSCCSEEE-----EE-E
T ss_pred HHHHHhCCCchHHHHHHHHhCCCeEEEEEecC--------------C------HHHHHHhccCCcceEEEE-----EE-c
Confidence 3999999999999999 677889999954321 1 222333333321111000 00 0
Q ss_pred CCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccC
Q 005922 218 AGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPL 259 (669)
Q Consensus 218 ~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~ 259 (669)
.......+.|+.+..++.|||+|.||+...+.||.+|.|...
T Consensus 181 ~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 181 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 112468899999999999999999999999999999999743
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.61 E-value=0.0009 Score=71.81 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=71.7
Q ss_pred EEEEecc-----ccccceeccCCcchhHHHhhc-CcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhc
Q 005922 131 KKIEIPN-----IRVGVIIGKSGETIKYLQLQS-GAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAES 204 (669)
Q Consensus 131 ~rIlVP~-----~~vG~IIGKgGetIK~IqeeT-GAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~ 204 (669)
.||-|-. +-+|..||++|.+|+.|.++. |-+|.|....+ + ...+|...|.-...
T Consensus 237 aKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~--------------d------p~~fi~nalsPA~V 296 (366)
T 1k0r_A 237 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD--------------D------PARFVANALSPAKV 296 (366)
T ss_dssp EEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS--------------S------HHHHHHHHTTTSCC
T ss_pred EEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcCC--------------C------HHHHHHHhcCCcce
Confidence 3555543 459999999999999999998 89999964321 1 22234333332211
Q ss_pred CCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 005922 205 GGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP 258 (669)
Q Consensus 205 ~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~ 258 (669)
.... .. ........+.|+.+..++.|||+|.||+...+.||.+|.|..
T Consensus 297 ~~V~-----~~-~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 297 VSVS-----VI-DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp SEEE-----EE-ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred eEEE-----EE-cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 1100 00 112456889999999999999999999999999999999974
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.89 E-value=0.0013 Score=76.36 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=0.0
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
..+.|.|+.++++.|||++|.+||+|.+++|+.|.|..+ -++++...+.+.+++|+++|++++.+..
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d--------g~v~I~~~~~~~~~~a~~~i~~i~~~~~ 626 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD--------GTVKIAATDGEKAKHAIRRIEEITAEIE 626 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecCC--------ccEEEecCCHHHHHHHHHHHHHHhhhhh
Confidence 567888999999999999999999999999999988632 2344444567888899988888876543
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.69 E-value=0.0069 Score=64.61 Aligned_cols=94 Identities=27% Similarity=0.401 Sum_probs=65.7
Q ss_pred cccceeccCCcchhHHHhhc-CcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCC
Q 005922 139 RVGVIIGKSGETIKYLQLQS-GAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQ 217 (669)
Q Consensus 139 ~vG~IIGKgGetIK~IqeeT-GAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~ 217 (669)
-+|..||.+|.+|+.|.++. |-+|.|..-.+ + -..+|...|.-...... ....
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~--------------d------~~~fi~nal~Pa~v~~v------~~~d 299 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSD--------------D------PKQLIANALAPATVIEV------EILD 299 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS--------------S------HHHHHHHHTCSSCCSEE------EEEE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCC--------------C------HHHHHHHhcCccEEEEE------EEEc
Confidence 48999999999999999998 78888853221 1 11233333321111000 0000
Q ss_pred CCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 005922 218 AGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIP 258 (669)
Q Consensus 218 ~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~ 258 (669)
.......+.||.+..++-|||+|.||+...+.||.+|.|..
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 12346889999999999999999999999999999999963
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.52 E-value=0.0022 Score=74.85 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=21.7
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCcccccc-CCHHHHHHHHHHHHHHH
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELM-GTPEQIAKAEQLINDVL 199 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtIt-Gt~E~V~kA~~lI~elI 199 (669)
....|.||.++++.|||++|.+||.|++++|+.|.|.. +..|.|+ .+.+.+++|+++|..++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-----------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999963 2334444 46788888888888776
No 83
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=87.13 E-value=0.3 Score=45.96 Aligned_cols=39 Identities=26% Similarity=0.552 Sum_probs=35.9
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccC
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPL 259 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~ 259 (669)
..+.+.|....+|..||++|++|+.|++++|-+|.|...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 467899999999999999999999999999999998754
No 84
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=83.96 E-value=0.33 Score=52.17 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=36.8
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDT 168 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~ 168 (669)
....+.|+....++.|||+|.|||-..+-||.+|.|..+.
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 5789999999999999999999999999999999997543
No 85
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=81.69 E-value=14 Score=33.53 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=22.2
Q ss_pred CccccccCCHHHHHHHHHHHHHHHHhhh
Q 005922 176 TRSVELMGTPEQIAKAEQLINDVLAEAE 203 (669)
Q Consensus 176 eRvVtItGt~E~V~kA~~lI~elI~e~~ 203 (669)
+-+|.|+|.+|.|.|-+.+-.|.|+.+.
T Consensus 42 ~l~i~itgvpeqvrkelakeaerl~~ef 69 (170)
T 4hhu_A 42 RLVIVITGVPEQVRKELAKEAERLKAEF 69 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 4578999999999998887777766543
No 86
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=79.60 E-value=1.1 Score=45.87 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=36.6
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDT 168 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~ 168 (669)
....+.|+....++.|||+|.|||-..+-||.+|.|....
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 4688999999999999999999999999999999997543
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=70.73 E-value=1 Score=42.60 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=26.6
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhC
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTG 251 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TG 251 (669)
.++.|.|-.+..|+||||.|.+++.|+-.+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3567778889999999999999999987763
No 88
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=69.13 E-value=3.6 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCCCc
Q 005922 11 GTPSKRKYEDQTTPPSA 27 (669)
Q Consensus 11 ~~~~Kr~~~d~~~p~~~ 27 (669)
.|.+||.|+|-.+|+-+
T Consensus 7 rrkrkrewdddddppkk 23 (28)
T 3ukx_C 7 RRKRKREWDDDDDPPKK 23 (28)
T ss_dssp CCCCCCCCCCSSSCCSC
T ss_pred HHHhhcccccCCCchhh
Confidence 34568888888887743
No 89
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=68.41 E-value=2.7 Score=44.72 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=36.0
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccC
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRD 167 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd 167 (669)
....+.|+....++.|||+|.|||-..+-||.+|.|..+
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 578899999999999999999999999999999999643
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=66.35 E-value=2.1 Score=40.59 Aligned_cols=67 Identities=16% Similarity=0.052 Sum_probs=41.8
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEA 202 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~ 202 (669)
-++.|.|....+|+||||.|.|++.|+--+...|+-. . . ..-+|.|.+=.+.-++.++.+...|.+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~--~----~-~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPT--Y----G-YSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHH--H----S-CEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhc--C----C-ceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 3577778889999999999999999987653222211 0 0 1112334455566666666666555554
No 91
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=65.14 E-value=4.8 Score=40.86 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 186 EQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 186 E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
+.|.+++ |.+.|++..... +.. +..-......++|.|-..+-+.|||++|..|++|++.
T Consensus 17 ~~l~ed~--Ir~~l~~~l~~a-gis--~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 17 DGVFNAE--LHSFFSKSLQDA-GYA--GIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp HHHHHHH--HHHHHHHHCCSS-CEE--EECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred hHhHHHH--HHHHHHHHHHHC-Ccc--eEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4455554 777776654321 110 0000012345788888899999999999999998764
No 92
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=61.70 E-value=3.2 Score=35.99 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
+.++|.|...+-|.|||++|..|++|+++
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 45788888889999999999999987653
No 93
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=58.98 E-value=5.6 Score=40.00 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-CCcc-hhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 186 EQIAKAEQLINDVLAEAESGG-SGIV-ARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 186 E~V~kA~~lI~elI~e~~~~~-~~~~-~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
|+|.+|. |.+.|.+..... .... -++ ....++|.|-..+-+.|||++|..|++|++.
T Consensus 14 dg~~~a~--Ire~l~k~l~~agis~IeI~R-----~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 14 DGVFYAE--LNEMLTRELAEDGYSGVEVRV-----TPMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp HHHHHHH--HHHHHHHHTSSCSSCCEECCE-----ETTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cCeehHH--HHHHHHHHHHhCCcceEEEEE-----cCCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 5676664 888887765432 1111 111 1345678888999999999999999987654
No 94
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=57.96 E-value=2.9 Score=36.27 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.2
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
...+|.|...+-|.||||+|..|++|+++
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 35788888899999999999999887654
No 95
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=57.46 E-value=3.1 Score=42.72 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=26.5
Q ss_pred EEEEeeCC-CceeeeecCCchHHHHHHH--------HhCCeEEe
Q 005922 222 HFAMKIPN-NKVGLVIGKGGETIKNMQA--------RTGARIQV 256 (669)
Q Consensus 222 t~~I~VP~-~~vG~IIGKGGstIK~Iqe--------~TGArIqI 256 (669)
...|.|.. ++.++||||+|++||+|.. .++++|.+
T Consensus 241 ~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 241 KGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 34566665 4788999999999998753 47777776
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.82 E-value=15 Score=36.66 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=40.6
Q ss_pred EEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHH
Q 005922 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIE 282 (669)
Q Consensus 223 ~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq 282 (669)
+-+.|+..++.+++|+++..|+.|.+.++|.|.|- ..-.|-|.+....+.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG----------~NG~IWi~~~~~~~~ 187 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG----------QNGLIWVNGDRRKVS 187 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC----------TTSEEEEESCHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE----------CCcEEEEeCCchhHH
Confidence 45678899999999999999999999999999983 145788998865433
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=54.10 E-value=4.3 Score=40.73 Aligned_cols=64 Identities=16% Similarity=0.343 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEE
Q 005922 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQ 255 (669)
Q Consensus 188 V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIq 255 (669)
.++|...|.++|........ ..... .....++.|.|..+..++||||.|.+++.||..+..-|.
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~--i~~~~--~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVD--ISVEY--NETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCE--EEEEE--ETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeE--EEEEE--ecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 35678888888876432110 00000 011235667777788999999999999999998875544
No 98
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=52.93 E-value=8.6 Score=43.90 Aligned_cols=95 Identities=29% Similarity=0.298 Sum_probs=60.3
Q ss_pred cceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCC
Q 005922 141 GVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGS 220 (669)
Q Consensus 141 G~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~ 220 (669)
-.++-..++.||+|-++..-+|.|..|.. +. -. -++|+++|.+++-++..- . .-.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~---~~~~~~~~~~~~~~~~~~-~---~~~~~~~--- 107 (651)
T 3af5_A 49 PEAIMKDGELIKDLAKVLKKRISVRPDPE---------VL--LP---PEEAEKLIFEIVPKEAEI-T---NIAFDPS--- 107 (651)
T ss_dssp CC-----CCSHHHHHHHHTSCEEEECCGG---------GS--CC---HHHHHHHHHHHSCGGGCC-C---EEEEETT---
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChh---------hc--CC---HHHHHHHHHHhCCCccCc-c---ceeecCC---
Confidence 34455778999999999999999975532 11 11 256888899888664221 0 0011111
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEec
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVI 257 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~ 257 (669)
+-++++-..+-+++|||.|.++++|.++++-+..+.
T Consensus 108 -~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 143 (651)
T 3af5_A 108 -VGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVV 143 (651)
T ss_dssp -TTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEE
T ss_pred -CceEEEEECCCCccccccchhHHHHhhccCcccccc
Confidence 123444445558999999999999999999877765
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=52.34 E-value=2.7 Score=42.60 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.4
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
..++|.|-..+-+.|||++|..|++|++.
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45678888889999999999999987654
No 100
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=51.14 E-value=3 Score=41.92 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=41.0
Q ss_pred eEEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHh
Q 005922 130 SKKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 130 t~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e 201 (669)
.+.|.|.....|+||||.|+|++.|+.-+..-|+-... ....-+|.|.|-.+.-++.+..+.+.+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-----~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-----DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-----SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-----CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 45666777889999999999999999877654433211 11122345556555555555544444433
No 101
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=50.85 E-value=23 Score=35.34 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=43.6
Q ss_pred EEEeeCCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHH
Q 005922 223 FAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVN 289 (669)
Q Consensus 223 ~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~ 289 (669)
+-+.|...++.+++++++..|+.|.++++|+|.|- .+..|.|.+. .+.+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG----------~NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA----------RNGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE----------TTTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe----------CCCEEEEecCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999983 1467888876 545444444443
No 102
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=50.60 E-value=8.7 Score=43.69 Aligned_cols=95 Identities=25% Similarity=0.317 Sum_probs=62.3
Q ss_pred cceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCC
Q 005922 141 GVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGS 220 (669)
Q Consensus 141 G~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~ 220 (669)
-.++-..++.||+|-++..-+|.|..|.. +. -. -++|+++|.+++-++.. ...-.+....+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~- 100 (636)
T 2ycb_A 40 PEIITENGNLIRDIAKDIRKRIIIRSDRS---------VL--MD---PEKAIRKIHEIVPEEAK----ITNISFDDVTC- 100 (636)
T ss_dssp THHHHSCTHHHHHHHHHHTSCEEEEECGG---------GC--CC---HHHHHHHHHHTSCSTTC----EEEEEEETTTT-
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChh---------hc--CC---HHHHHHHHHHhCCCccC----ccceEecCCCc-
Confidence 44555779999999999999999975532 11 11 25678888888765321 00001111112
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEec
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVI 257 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~ 257 (669)
++.|-..+-|++|||.|.++++|.+++|-+-.+.
T Consensus 101 ---~v~~~~~~p~~~~g~~~~~~~~i~~~~~~~~~~~ 134 (636)
T 2ycb_A 101 ---EVIIEARKPGLVIGKYGSTSREIVKNTGWAPKIL 134 (636)
T ss_dssp ---EEEEEESCTHHHHCTTSHHHHHHHHHHCCEEEEE
T ss_pred ---eEEEEECCCCccccccchhHHHHhhccCCcccee
Confidence 3344444458999999999999999999877665
No 103
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=47.95 E-value=22 Score=35.48 Aligned_cols=58 Identities=28% Similarity=0.238 Sum_probs=40.7
Q ss_pred EEEEeccccccceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHH
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLIN 196 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~ 196 (669)
+-+.|+...+.+++++++..++.|.++++++|.|=. .-|+.+-..+.+.+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~--------NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR--------NGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET--------TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC--------CCEEEEecCCHHHHHHHHHHHH
Confidence 455788899999999999999999999999999842 2344433345545544444443
No 104
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=47.74 E-value=5.3 Score=40.53 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.2
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHh
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQART 250 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~T 250 (669)
..++|.|-..+-+.|||++|..|++|++..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 456788888899999999999999987653
No 105
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=46.57 E-value=8.1 Score=44.07 Aligned_cols=95 Identities=23% Similarity=0.304 Sum_probs=63.5
Q ss_pred cceeccCCcchhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCC
Q 005922 141 GVIIGKSGETIKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGS 220 (669)
Q Consensus 141 G~IIGKgGetIK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~ 220 (669)
-.++-..++.||+|-++..-+|.|..|.. +. -. -++|+++|.+++-++..- ..-.+..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~---~~~~~~~~~~~~~~~~~~----~~~~~~~---- 101 (640)
T 2xr1_A 44 PRKFADDGNIIRNLAKELRTRIAMRPDPR---------VL--AT---PEDSISIIEEVVPKESVI----SSYYFDP---- 101 (640)
T ss_dssp HHHHHHCTHHHHHHHHHHTSCEEEEECGG---------GC--CC---HHHHHHHHHHHSCGGGCE----EEEEECT----
T ss_pred HHHhccccHHHHHHHHHhhceEEEeCChh---------hc--CC---HHHHHHHHHHhCCCccCc----cceeecC----
Confidence 34455778999999999999999975532 11 11 256888888888664210 0001111
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEec
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQVI 257 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI~ 257 (669)
.+-++.|-..+-+++|||.|+++++|.++++-+..+.
T Consensus 102 ~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 138 (640)
T 2xr1_A 102 DSGEVIIEAEKPGLVIGKHGATLREITKQIGWIPKVV 138 (640)
T ss_dssp TTSEEEEEESSHHHHHCSSSHHHHHHHHHHCSEEEEE
T ss_pred CCceEEEEeCCCCcccccchhhHHHHHhccCcccccc
Confidence 1224444445558999999999999999999877765
No 106
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=46.32 E-value=7 Score=39.43 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=26.1
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHH----HhCCeEEe
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQA----RTGARIQV 256 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe----~TGArIqI 256 (669)
.++|.|-...-+.|||++|+.|++|++ .++.+|+|
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I 101 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 101 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 456677778889999999999998764 46655443
No 107
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=45.97 E-value=18 Score=36.14 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=30.9
Q ss_pred EEEEeccccccceeccCCcchhHHHhhcCcEEEEc
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVT 165 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Is 165 (669)
.-+.|+...+.++||+++..++.|.+.+++.|.|=
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG 172 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG 172 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE
Confidence 34578889999999999999999999999999984
No 108
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=45.83 E-value=67 Score=31.80 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=53.4
Q ss_pred CcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecC
Q 005922 159 GAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGK 238 (669)
Q Consensus 159 GAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGK 238 (669)
..+|.++.. ...|.|+|+++.|+++.++|..+=.... .....+.+-.....-|.
T Consensus 139 ~g~v~~d~~--------tN~Liv~g~~~~i~~i~~li~~lD~p~~----------------~~~~vi~l~~a~A~dl~-- 192 (246)
T 4e9j_A 139 YGHLAAVPS--------ANALIISDRSANIARIEDVIRQLDQKGS----------------HDYSVINLRYGWVMDAA-- 192 (246)
T ss_dssp TSEEEEEGG--------GTEEEEEECHHHHHHHHHHHHHHHTCSC----------------CCEEEEECSSSCHHHHH--
T ss_pred CceEEEcCC--------CCEEEEEcCHHHHHHHHHHHHHhccccc----------------cceEEEEecCCCHHHHH--
Confidence 456776533 3568899999999988877766522110 11222333333322221
Q ss_pred CchHHHHHHHHh------CCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 005922 239 GGETIKNMQART------GARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEV 291 (669)
Q Consensus 239 GGstIK~Iqe~T------GArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dl 291 (669)
+.|+.|.... +.+|... ..-..|.|+++++.++..++||..|
T Consensus 193 --~~L~~~~~~~~~~~~~~~~v~ad---------~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 193 --EVLNNAMSRGQAKGAAGAQVIAD---------ARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp --HHHHHHHHHTCSTTCTTCEEEEE---------GGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred --HHHHHHhccCCCCCCCceEEEEe---------CCCCeEEEECCHHHHHHHHHHHHHh
Confidence 2233332221 2344432 2234677999999999998888775
No 109
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=44.60 E-value=57 Score=32.52 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.2
Q ss_pred cEEEEEcC--HHHHHHHHHHHHHHHhhc
Q 005922 270 RTVQIDGT--SEQIESAKQLVNEVISEN 295 (669)
Q Consensus 270 r~VtItG~--peqVq~Ak~LI~dlL~e~ 295 (669)
..|+|+|. .+.+..|.+.|..+|.+-
T Consensus 188 GKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 188 GKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 35788888 689999999999999874
No 110
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=39.27 E-value=2.2e+02 Score=28.30 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=75.2
Q ss_pred hHHHhhcCcEEEEccCCc-----cCC-CCCCccccccC-CHHHHHHHHHHHHHHHHhhhcCCC--Ccchhc-c---cCCC
Q 005922 152 KYLQLQSGAKIQVTRDTE-----ADL-NSPTRSVELMG-TPEQIAKAEQLINDVLAEAESGGS--GIVARR-L---TGQA 218 (669)
Q Consensus 152 K~IqeeTGAkI~Iskd~e-----~~p-~~~eRvVtItG-t~E~V~kA~~lI~elI~e~~~~~~--~~~~rr-~---~~~~ 218 (669)
...-|.+.++|-..++.- .+. -+-+.+++|.| +...|+.|++...+.+++...... ...... + ....
T Consensus 55 D~A~KaA~Vel~~~r~~~gg~g~~~~~~~G~~i~iigG~dvs~V~~av~~~~~~~~~~~~~~~~~~~gh~~~~ah~ia~~ 134 (220)
T 3u27_C 55 DEATKKAVVDVAYGKSFYGGAANANTKLAGEVIGILSGPTPAEVKSGLAAAVDFIENEAAFISANDDDSIAYFAHCISRT 134 (220)
T ss_dssp HHHHHHSSCEEEEEEECTTCGGGCCSTTTTTEEEEEEESSHHHHHHHHHHHHHHHHHTCCEEECSTTSCCEEEEEEESSC
T ss_pred HHHHhhcCeEEEEEeeccccCcccccccCccEEEEecCCCHHHHHHHHHHHHHHHHhhHhheeccCCCCeEEEEeecCCc
Confidence 456677888888876531 011 12334557777 899999999999998887531100 000000 0 0000
Q ss_pred C-CcEEEEeeC-CCceeeeecCCchHHHHH---HHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHh
Q 005922 219 G-SDHFAMKIP-NNKVGLVIGKGGETIKNM---QARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293 (669)
Q Consensus 219 ~-~~t~~I~VP-~~~vG~IIGKGGstIK~I---qe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~ 293 (669)
. .....+-++ .+-+|.|+..-..-|.-. -+...++|... ..++.. ..-..++|+|+-.+|+.|.+...+.++
T Consensus 135 ~~al~~~~g~~~g~AiGil~~~p~~ai~aaD~A~KaA~V~l~~~--~~p~~~-~~~~g~~itGdvsAV~aAv~a~~~a~~ 211 (220)
T 3u27_C 135 GTYLSKTAGIPEGESLAYLIAPPLEAMYALDVALKAADVRLVAF--YGPPSE-TNFGGGLLTGSQSACKAACDAFAEAVK 211 (220)
T ss_dssp CHHHHHHHTSCTTCCEEEEEESHHHHHHHHHHHHHHSSCEEEEE--ECSCCT-TSCEEEEEESCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCcceEEEEEcCCHHHHHHHHHHHhhCCeEEEEE--EcccCc-CcEEEEEEEEcHHHHHHHHHHHHHHHH
Confidence 0 000001112 256778887765333322 23345555321 122111 122339999999999999999999887
Q ss_pred hc
Q 005922 294 EN 295 (669)
Q Consensus 294 e~ 295 (669)
..
T Consensus 212 ~~ 213 (220)
T 3u27_C 212 FV 213 (220)
T ss_dssp -C
T ss_pred HH
Confidence 63
No 111
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.84 E-value=17 Score=36.02 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.1
Q ss_pred cEEEEeeCCCceeeeecCCchHHHHHHH
Q 005922 221 DHFAMKIPNNKVGLVIGKGGETIKNMQA 248 (669)
Q Consensus 221 ~t~~I~VP~~~vG~IIGKGGstIK~Iqe 248 (669)
..++|.|-..+-+.|||++|..|++|++
T Consensus 40 ~~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 40 LGTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp SCCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3457778888889999999999998764
No 112
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=38.62 E-value=14 Score=37.47 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=22.4
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
.++|.|-...-+.|||++|+.|++|++.
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3456667778899999999999988754
No 113
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=38.08 E-value=80 Score=30.38 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred ccccC--CHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHHhCCeEEe
Q 005922 179 VELMG--TPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQARTGARIQV 256 (669)
Q Consensus 179 VtItG--t~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~TGArIqI 256 (669)
+++|| +.|.+.+|++.|.++|++...... .. ..+++-+|-.-.++. .-++..|....+..+.-
T Consensus 61 iv~TGaks~e~~~~a~~~i~~~L~~lg~~~~-~~---------~~~i~NIvas~dl~~-----~I~Le~la~~~~~~~~Y 125 (180)
T 1ytb_A 61 MVVTGAKSEDDSKLASRKYARIIQKIGFAAK-FT---------DFKIQNIVGSCDVKF-----PIRLEGLAFSHGTFSSY 125 (180)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTCCCC-CE---------EEEEEEEEEEEECSS-----CBCHHHHHHHTTTTEEC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCCCcc-cc---------cceEEEEEEEEECCC-----ccCHHHHHHhcccceEE
Confidence 67777 789999999999999987432100 00 001111110001111 11444444443333333
Q ss_pred ccCCCCCC----CCCC-------ccEEEEEcC--HHHHHHHHHHHHHHHhhc
Q 005922 257 IPLHLPPG----DTST-------ERTVQIDGT--SEQIESAKQLVNEVISEN 295 (669)
Q Consensus 257 ~~~~~ppg----e~s~-------er~VtItG~--peqVq~Ak~LI~dlL~e~ 295 (669)
.++..|.. ++.. ...|+|+|. .+.++.|.+.|..+|.+-
T Consensus 126 EPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 126 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp CTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 33211100 0000 234778887 689999999999999874
No 114
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=36.54 E-value=3.4e+02 Score=27.18 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=70.2
Q ss_pred hHHHhhcCcEEEE---ccCCccCCCCCC-ccccccC-CHHHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEE---
Q 005922 152 KYLQLQSGAKIQV---TRDTEADLNSPT-RSVELMG-TPEQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHF--- 223 (669)
Q Consensus 152 K~IqeeTGAkI~I---skd~e~~p~~~e-RvVtItG-t~E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~--- 223 (669)
...-|.+.++|-. .++. +++... .++++.| +...|+.|++...+.+++........ ..+..++
T Consensus 57 D~AvKaA~Velv~i~lar~~--~~G~G~g~~ii~gg~dVs~V~sAve~~~~~~~~~~~~~~~~-------~~gh~~~~v~ 127 (230)
T 3io0_A 57 DEAVKGTNTEVATIELPRDT--KGGAGHGIFIVLKAADVSDARRAVEIALKQTDKYLGNVYLC-------DAGHLEVQYT 127 (230)
T ss_dssp HHHHHTSSCEEEEEECCSCS--SSSSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHHTTEEEE-------TTEEEEEEEE
T ss_pred HHHHhhcCeEEEEEeccccc--cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHheec-------CCCcEEEEEe
Confidence 4566778888776 5553 443322 3445554 89999999999999887753211000 0000011
Q ss_pred ---------EEeeC-CCceeeeecCCch-HHHH---HHHHhCCeEE-eccCCCCCC---CCCCccEEEEEcCHHHHHHHH
Q 005922 224 ---------AMKIP-NNKVGLVIGKGGE-TIKN---MQARTGARIQ-VIPLHLPPG---DTSTERTVQIDGTSEQIESAK 285 (669)
Q Consensus 224 ---------~I~VP-~~~vG~IIGKGGs-tIK~---Iqe~TGArIq-I~~~~~ppg---e~s~er~VtItG~peqVq~Ak 285 (669)
.+.++ .+-+|.|++.--+ -|.- .-+...++|. +. .+.. ....+-.|+|+|+-.+|+.|.
T Consensus 128 ar~~~al~~~~g~~~g~AiGil~~~p~~~~i~aaD~AlKaA~V~l~~~~---~~~~g~~~~snk~~~~itGdvsAV~~Av 204 (230)
T 3io0_A 128 ARASLIFEKAFGAPSGQAFGIMHAAPAGVGMIVADTALKTADVKLITYG---SPTNGVLSYTNEILITISGDSGAVLQSL 204 (230)
T ss_dssp SSCCHHHHHHHCCCTTSEEEEEEEESHHHHHHHHHHHHHHSCCEEEEEE---CSSSSSSSSCSCEEEEEEECHHHHHHHH
T ss_pred cChHHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEE---cCCCCcccccceEEEEEEEcHHHHHHHH
Confidence 01112 2456777776653 2222 2334455553 32 2111 134567899999988888877
Q ss_pred HHHHH
Q 005922 286 QLVNE 290 (669)
Q Consensus 286 ~LI~d 290 (669)
+...+
T Consensus 205 ~a~~~ 209 (230)
T 3io0_A 205 TAARK 209 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 115
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=34.66 E-value=26 Score=33.64 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=30.8
Q ss_pred EEEEeccccccceeccCCc-chhHHHhhcCcEEEEc
Q 005922 131 KKIEIPNIRVGVIIGKSGE-TIKYLQLQSGAKIQVT 165 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGe-tIK~IqeeTGAkI~Is 165 (669)
.-|.|+..++.++|+|.+. .|+.|.++++++|.|=
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG 128 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG 128 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE
Confidence 4577999999999998888 8999999999999984
No 116
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=33.93 E-value=91 Score=31.43 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=22.4
Q ss_pred cEEEEEcC--HHHHHHHHHHHHHHHhhcc
Q 005922 270 RTVQIDGT--SEQIESAKQLVNEVISENR 296 (669)
Q Consensus 270 r~VtItG~--peqVq~Ak~LI~dlL~e~~ 296 (669)
..|+|+|. .+.++.|.+.|..+|.+-+
T Consensus 210 GKIviTGaK~~~~~~~Ai~~i~p~L~~~~ 238 (240)
T 1rm1_A 210 GKIVLTGAKQREEIYQAFEAIYPVLSEFR 238 (240)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 35788887 7899999999999998743
No 117
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=33.93 E-value=18 Score=36.84 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=24.5
Q ss_pred EEEeeCC-CceeeeecCCchHHHHHH--------HHhCCeEEe
Q 005922 223 FAMKIPN-NKVGLVIGKGGETIKNMQ--------ARTGARIQV 256 (669)
Q Consensus 223 ~~I~VP~-~~vG~IIGKGGstIK~Iq--------e~TGArIqI 256 (669)
..|.|.. ++.++|||++|++||+|- +.++++|.+
T Consensus 233 ~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l 275 (301)
T 1ega_A 233 GLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHL 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred EEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 4555643 567889999999999874 446666655
No 118
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=32.94 E-value=15 Score=37.14 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.9
Q ss_pred eEEEEeccccccceeccCCcchhHHHhh
Q 005922 130 SKKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 130 t~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
..+|.|...+-|.||||+|..|++|+++
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4678888889999999999999887754
No 119
>3gfh_A Ethanolamine utilization protein EUTL; bacterial mircocompartment, shell protein, structural protein; 2.20A {Escherichia coli} PDB: 3mpv_A 3i87_A 3i82_A
Probab=32.50 E-value=1e+02 Score=30.89 Aligned_cols=140 Identities=9% Similarity=0.098 Sum_probs=72.5
Q ss_pred hHHHhhcCcEEEEccCCc------cCCCCCCccccccC-CHHHHHHHHHHHHHHHHhhhcCCC--Ccchhcc----cCCC
Q 005922 152 KYLQLQSGAKIQVTRDTE------ADLNSPTRSVELMG-TPEQIAKAEQLINDVLAEAESGGS--GIVARRL----TGQA 218 (669)
Q Consensus 152 K~IqeeTGAkI~Iskd~e------~~p~~~eRvVtItG-t~E~V~kA~~lI~elI~e~~~~~~--~~~~rr~----~~~~ 218 (669)
...-|.+.++|-..++.- +..-.-+.+++|.| +...|+.|++...+.+++...... ......+ ....
T Consensus 53 D~A~KaA~Vel~~~r~~~gg~g~g~~~l~Gk~iiIi~G~dvs~V~~av~~~~~~~~~~~~~~~~~~~~h~~~~ah~ia~~ 132 (225)
T 3gfh_A 53 DEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVVSRT 132 (225)
T ss_dssp HHHHHHSSCEEEEEEECTTCSTTCSSTTTBTEEEEEEESSHHHHHHHHHHHHHHHTTSSCEEESSTTSCCEEEEEEESSC
T ss_pred HHHHhhcCeEEEEEEeecccCCcccccCCCcEEEEEcCCCHHHHHHHHHHHHHHHHhhHhheeccCCCCeEEEEEeccCc
Confidence 456677888888776541 11113456788888 899999999999998877431100 0000000 0000
Q ss_pred C-CcEEEEeeC-CCceeeeecCCchHHHHH---HHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHh
Q 005922 219 G-SDHFAMKIP-NNKVGLVIGKGGETIKNM---QARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVIS 293 (669)
Q Consensus 219 ~-~~t~~I~VP-~~~vG~IIGKGGstIK~I---qe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~ 293 (669)
. .....+-++ .+-+|.|+..--.-|.-. -+...++|... ..++. ...-..+.|+|+-.+|+.|.+...+.++
T Consensus 133 ~~al~~~~g~~~g~AiGil~~~p~~aI~aaD~A~KaA~V~l~~~--~~p~~-g~~~~g~~itGdvsAV~aAv~a~~~a~~ 209 (225)
T 3gfh_A 133 GSYLSSTAGITLGDPMAYLVAPPLEATYGIDAALKSADVQLATY--VPPPS-ETNYSAAFLTGSQAACKAACNAFTDAVL 209 (225)
T ss_dssp CHHHHTSTTCCTTCCEEEEEECHHHHHHHHHHHHHHSCCEEEEE--ECSCC-TTSCEEEEEESCSSSTTHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCceEEEEEcCcHHHHHHHHHHHhhCCeEEEEE--EcccC-cCcEEEEEEEEcHHHHHHHHHHHHHHHH
Confidence 0 000001112 256777777765333322 23345555422 11211 1122339999997777777666665544
Q ss_pred h
Q 005922 294 E 294 (669)
Q Consensus 294 e 294 (669)
+
T Consensus 210 ~ 210 (225)
T 3gfh_A 210 E 210 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=30.86 E-value=2.4e+02 Score=28.89 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCce-eeeecCCchHHHHHHHHhCCeEEeccCCCCCCC-
Q 005922 188 IAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKV-GLVIGKGGETIKNMQARTGARIQVIPLHLPPGD- 265 (669)
Q Consensus 188 V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~v-G~IIGKGGstIK~Iqe~TGArIqI~~~~~ppge- 265 (669)
.+|-..+|...|+|+..... ....-+ .....+.+|.. ..- +.|-| -..+.+|-+..+++|...-. .++
T Consensus 13 ~~~~~~~i~~~l~ED~~~gD-~Tt~~~--~~~~~~a~~~a--r~~pgv~aG--~~~~~~~f~~~~~~v~~~~~---dG~~ 82 (285)
T 1o4u_A 13 MEKILDLLMSFVKEDEGKLD-LASFPL--RNTTAGAHLLL--KTENVVASG--IEVSRMFLEKMGLLSKFNVE---DGEY 82 (285)
T ss_dssp CHHHHHHHHHHHHHHHCSCC-TTTGGG--TTCEEEEEEEE--CCSEEECCS--HHHHHHHHHHTTCEEEESCC---TTCE
T ss_pred hhhhHHHHHHHHHhcCCCCC-ccchhc--cCCeEEEEEEE--cCCCeEEEc--HHHHHHHHHHcCCEEEEEcC---CCCC
Confidence 46777788889998864321 111111 11122334333 223 44433 56778888888988864321 121
Q ss_pred -CCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 266 -TSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 266 -~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
...+.+++|+|+...+..+.+.++.+|..
T Consensus 83 v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~ 112 (285)
T 1o4u_A 83 LEGTGVIGEIEGNTYKLLVAERTLLNVLSV 112 (285)
T ss_dssp EESCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 33477899999999999999999988854
No 121
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=30.54 E-value=17 Score=35.97 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=27.1
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHH----HhCCeEEec
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQA----RTGARIQVI 257 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe----~TGArIqI~ 257 (669)
.++|.|-...-+.|||++|+.|++|++ .++.+|+|.
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 456667777889999999999998764 567665553
No 122
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=29.53 E-value=2.4e+02 Score=26.88 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=28.8
Q ss_pred hHHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHH
Q 005922 241 ETIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQIESAKQLVNE 290 (669)
Q Consensus 241 stIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqVq~Ak~LI~d 290 (669)
..|..+...++.+|+.. -....|.|+|- .+.++.+..||.+
T Consensus 108 KkIvK~IKdsklKVqa~---------IQGd~vRVtgKkrDDLQ~viallk~ 149 (163)
T 1in0_A 108 KKITKLVKDSKIKVQTQ---------IQGEQVRVTGKSRDDLQAVIQLVKS 149 (163)
T ss_dssp HHHHHHHHHHTCSEEEE---------EETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeE---------ecCcEEEEecCCHHHHHHHHHHHHh
Confidence 34555566777666653 11457999999 8889998888875
No 123
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=28.94 E-value=1.1e+02 Score=27.61 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=37.5
Q ss_pred eccccccceeccCCcc-hhHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHh
Q 005922 135 IPNIRVGVIIGKSGET-IKYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAE 201 (669)
Q Consensus 135 VP~~~vG~IIGKgGet-IK~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e 201 (669)
||-.-+=++|=.--+| +-+|-..|||||.|..| ...||+++|--. ++|++++.++++-
T Consensus 61 IPINs~FrcVqEAEEtLLIDIasntgcKIRvqgd-----~t~ErlfEIpDe----e~cl~fL~~v~~a 119 (124)
T 2kie_A 61 IPINSHFRCVQEAEETLLIDIASNSGCKIRVQGD-----WIRERRFEIPDE----EHCLKFLSAVLAA 119 (124)
T ss_dssp EECSSSCEEEESSSSCSSCCGGGCSSEEEEEESS-----SCSCEEEEECCH----HHHHHHHHHHHHH
T ss_pred eecccchhhhHhhhhheEEeccCCCCcEEEEecc-----cchhheeeCCCH----HHHHHHHHHHHHH
Confidence 3433333333333333 46788899999999755 467999999653 5677777776653
No 124
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.70 E-value=16 Score=36.77 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.4
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
...+|.|...+-|.||||+|..|++|+++
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 35677888899999999999999887654
No 125
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=27.66 E-value=38 Score=32.45 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=38.7
Q ss_pred EEEeeCCCceeeeecCCch-HHHHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcC-HHHH
Q 005922 223 FAMKIPNNKVGLVIGKGGE-TIKNMQARTGARIQVIPLHLPPGDTSTERTVQIDGT-SEQI 281 (669)
Q Consensus 223 ~~I~VP~~~vG~IIGKGGs-tIK~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~-peqV 281 (669)
+-+.|+..++.++|+|.+. .|+.|.+++++.|.|- ..-.|-|.+. .+.+
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG----------~NG~IWi~~~~~~~~ 143 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG----------LNGKIWVKCEELSNT 143 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE----------TTTEEEEECSSHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE----------CCcEEEEecCCHHHH
Confidence 4578999999999998888 8999998999999983 1346778866 4433
No 126
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=27.54 E-value=19 Score=36.49 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=24.6
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
...+|.|...+-|.||||+|..|++|+++
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 35778888899999999999999987764
No 127
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.89 E-value=17 Score=36.14 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=27.1
Q ss_pred eEEEEeccccccceeccCCcchhHHHh----hcC---cEEEEc
Q 005922 130 SKKIEIPNIRVGVIIGKSGETIKYLQL----QSG---AKIQVT 165 (669)
Q Consensus 130 t~rIlVP~~~vG~IIGKgGetIK~Iqe----eTG---AkI~Is 165 (669)
..+|.|...+-|.|||++|..|++|++ .++ +.|+|.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 356777778889999999999988764 455 455553
No 128
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.85 E-value=34 Score=29.76 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=34.3
Q ss_pred CcchhHHHhhcCcEEEEccC-CccCCCCC--CccccccCCHHHHHHHHHHHHH
Q 005922 148 GETIKYLQLQSGAKIQVTRD-TEADLNSP--TRSVELMGTPEQIAKAEQLIND 197 (669)
Q Consensus 148 GetIK~IqeeTGAkI~Iskd-~e~~p~~~--eRvVtItGt~E~V~kA~~lI~e 197 (669)
.-.|.+|.+++++.|+|... .+...+.. .-+|.|.|+.+.+++|++.|.+
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 34788899999999999532 11111111 2477899999999988887764
No 129
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=25.79 E-value=1.4e+02 Score=26.75 Aligned_cols=53 Identities=6% Similarity=0.079 Sum_probs=34.6
Q ss_pred CceeeeecCCchHHHHHHHHh--------CCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 005922 230 NKVGLVIGKGGETIKNMQART--------GARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEV 291 (669)
Q Consensus 230 ~~vG~IIGKGGstIK~Iqe~T--------GArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dl 291 (669)
+....+|=-.....++|.+.. .+.|.+ +.....|.|+|++..|+..+++|..+
T Consensus 73 e~~t~~i~l~~~~a~~l~~~L~~~~ll~~rg~v~~---------d~~tn~l~v~g~~~~v~~v~~~i~~l 133 (137)
T 2y9k_A 73 EMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRG---------DNRKGTFYVSGPPVYVDMVVNAATMM 133 (137)
T ss_dssp GCEEEEEECSSSCHHHHHHHHCCTTCCCSSSCEEE---------CSSTTEEEEEECHHHHHHHHHHHHHH
T ss_pred heEEEEEEcCCCCHHHHHHHHHHcCCCCCCCceEE---------CCCCCEEEEECcHHHHHHHHHHHHHh
Confidence 344555555555555555432 233443 33467899999999999999988765
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=25.55 E-value=17 Score=37.14 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=25.1
Q ss_pred EEeeCC-CceeeeecCCchHHHHHH--------HHhCCeEEe
Q 005922 224 AMKIPN-NKVGLVIGKGGETIKNMQ--------ARTGARIQV 256 (669)
Q Consensus 224 ~I~VP~-~~vG~IIGKGGstIK~Iq--------e~TGArIqI 256 (669)
.|.|.. ++.++||||+|++||+|. +..+++|.+
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 445544 678999999999999874 457777766
No 131
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.54 E-value=24 Score=36.63 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=30.6
Q ss_pred EEEEeccccccceeccCCcchhHHHhhcCcEEEEc
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQSGAKIQVT 165 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~IqeeTGAkI~Is 165 (669)
.-|.|+..++.+||++++..|+.|.+.+++.|.|=
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG 246 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 246 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEE
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEE
Confidence 45678888999999999999999999999999883
No 132
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.52 E-value=21 Score=35.60 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=21.8
Q ss_pred EEEEeeCCCceeeeecCCchHHHHHHHH
Q 005922 222 HFAMKIPNNKVGLVIGKGGETIKNMQAR 249 (669)
Q Consensus 222 t~~I~VP~~~vG~IIGKGGstIK~Iqe~ 249 (669)
.++|.|-...-+.|||++|+.|++|+++
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 3456666677789999999999988654
No 133
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=23.96 E-value=5.3e+02 Score=26.89 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=40.2
Q ss_pred eeeeecCCchHHHHHHHHh--CCeEEeccCCCCCCC--CCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 232 VGLVIGKGGETIKNMQART--GARIQVIPLHLPPGD--TSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 232 vG~IIGKGGstIK~Iqe~T--GArIqI~~~~~ppge--~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
-+.|-| -..+++|-+.. +++|...-. .++ ...+.+++|+|+...+..+...++.+|.-
T Consensus 88 ~gVlaG--~~~a~~vf~~ld~~~~v~~~~~---dG~~v~~g~~l~~v~G~a~~ll~~Er~aLN~L~~ 149 (320)
T 3paj_A 88 AGVFCG--QLWADEVFKQLGGQVSIEWHVQ---DGDTLTPNQTLCTLTGPARILLTGERNAMNFIQT 149 (320)
T ss_dssp CEECCC--HHHHHHHHHHTTSCCEEEESSC---TTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CceEec--HHHHHHHHHHcCCCeEEEEEeC---CCCEecCCCEEEEEEecHHHHHHHHHHHHHHHHH
Confidence 345544 45677787777 677754321 221 34578999999999999999999888743
No 134
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=23.80 E-value=4.3e+02 Score=26.93 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcchhcccCCCCCcEEEEeeCCCceeeeecCCchHHHHHHHH-h---CCeEEeccCCC
Q 005922 186 EQIAKAEQLINDVLAEAESGGSGIVARRLTGQAGSDHFAMKIPNNKVGLVIGKGGETIKNMQAR-T---GARIQVIPLHL 261 (669)
Q Consensus 186 E~V~kA~~lI~elI~e~~~~~~~~~~rr~~~~~~~~t~~I~VP~~~vG~IIGKGGstIK~Iqe~-T---GArIqI~~~~~ 261 (669)
+.+.....+|...|+|+...+........... ....++.|-...-+.|-| -..+.+|-+. . +++|...-.
T Consensus 5 ~~~~~~~~~i~~~l~ED~~~g~~D~Tt~~~~~--~~~~~a~~~ar~~gv~aG--~~~~~~~f~~~~~~~~~~v~~~~~-- 78 (284)
T 1qpo_A 5 WELAAARAAIARGLDEDLRYGPDVTTLATVPA--SATTTASLVTREAGVVAG--LDVALLTLNEVLGTNGYRVLDRVE-- 78 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHSCT--TCEEEEEEEESSCEECCC--HHHHHHHHHHHHCTTSEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccccCC--CCeEEEEEEECCCEEEEC--HHHHHHHHHHhCCCCCEEEEEEcC--
Confidence 34555666788888887643210111111111 222333332333444434 4567777777 6 566653211
Q ss_pred CCCC--CCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 262 PPGD--TSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 262 ppge--~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
.++ ...+.+++|+|+...+..+.+.++.+|..
T Consensus 79 -dG~~v~~g~~v~~i~G~~~~ll~~Er~~Ln~l~~ 112 (284)
T 1qpo_A 79 -DGARVPPGEALMTLEAQTRGLLTAERTMLNLVGH 112 (284)
T ss_dssp -TTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred -CCCEecCCcEEEEEEEeHHHHHHHHHHHHHHHHH
Confidence 111 34577999999999999999999888854
No 135
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.40 E-value=22 Score=35.35 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=21.4
Q ss_pred EEEEeccccccceeccCCcchhHHHhh
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
++|.|....-|.||||+|+.|++|+++
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 445566677899999999999988765
No 136
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=23.26 E-value=15 Score=36.30 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=24.9
Q ss_pred EEEEeccccccceeccCCcchhHHHh----hcCcEEEE
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQL----QSGAKIQV 164 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~Iqe----eTGAkI~I 164 (669)
.+|.|....-|.||||+|+.|++|++ .++.+|+|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 45556667889999999999988765 45554444
No 137
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=22.42 E-value=2.5e+02 Score=25.93 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.6
Q ss_pred CccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 268 TERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 268 ~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
....|.|+|++..|+..+++|..+=..
T Consensus 126 ~tn~l~Vsg~p~~v~~v~~~i~~LD~~ 152 (156)
T 3gr5_A 126 TFNSIEVRGVPECIKYITSLSESLDKE 152 (156)
T ss_dssp STTCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHhhh
Confidence 467899999999999999998876443
No 138
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.19 E-value=28 Score=35.44 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=20.3
Q ss_pred ceEEEEecc-ccccceeccCCcchhHHHh
Q 005922 129 TSKKIEIPN-IRVGVIIGKSGETIKYLQL 156 (669)
Q Consensus 129 vt~rIlVP~-~~vG~IIGKgGetIK~Iqe 156 (669)
+...|+|.. ++.+.||||+|++||+|..
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHH
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHH
Confidence 444555554 4688999999999987643
No 139
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=21.97 E-value=25 Score=35.49 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=21.2
Q ss_pred EEEEeccccccceeccCCcchhHHHhh
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
.+|.|-...-|.||||+|..|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 445555677899999999999888764
No 140
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=21.72 E-value=17 Score=36.67 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=21.4
Q ss_pred EEEEeccccccceeccCCcchhHHHhh
Q 005922 131 KKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 131 ~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
++|.|....-|.|||++|+.|++|+++
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 455666778899999999999887653
No 141
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.53 E-value=18 Score=36.73 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.5
Q ss_pred ceEEEEeccccccceeccCCcchhHHHhh
Q 005922 129 TSKKIEIPNIRVGVIIGKSGETIKYLQLQ 157 (669)
Q Consensus 129 vt~rIlVP~~~vG~IIGKgGetIK~Iqee 157 (669)
...+|.|...+-|.||||+|..|++|+++
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35677788888999999999999988765
No 142
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.61 E-value=1.9e+02 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.3
Q ss_pred ccccccCCHHHHHHHHHHHHHH
Q 005922 177 RSVELMGTPEQIAKAEQLINDV 198 (669)
Q Consensus 177 RvVtItGt~E~V~kA~~lI~el 198 (669)
..+.|+|+.+.|+++.++|..+
T Consensus 145 N~Liv~g~~~~i~~i~~li~~l 166 (241)
T 3ezj_A 145 NVIMLTGRASVVERLTEVIQRV 166 (241)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHh
Confidence 4689999999999888877765
No 143
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=20.45 E-value=3.7e+02 Score=25.93 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=74.4
Q ss_pred hHHHhhcCcEEEEccCCccCCCCCCccccccCCHHHHHHHHHHHHHHHHhhhcCC------CCcchhcccCCCCCcEEEE
Q 005922 152 KYLQLQSGAKIQVTRDTEADLNSPTRSVELMGTPEQIAKAEQLINDVLAEAESGG------SGIVARRLTGQAGSDHFAM 225 (669)
Q Consensus 152 K~IqeeTGAkI~Iskd~e~~p~~~eRvVtItGt~E~V~kA~~lI~elI~e~~~~~------~~~~~rr~~~~~~~~t~~I 225 (669)
..+.|.++++|...+. . +.-.-+++|+|+...|+.|++...+.+.+..... .......+.. ..+
T Consensus 21 D~a~Kaa~V~l~~~~~--~--~~G~~~~ii~Gdv~aV~~Av~a~~~~~~~~vv~s~VI~rph~el~~aL~~------~~~ 90 (192)
T 3n79_A 21 DAMLKSANVDLLVSKT--I--SPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISG------LNS 90 (192)
T ss_dssp HHHHHHSSCEEEEEEE--E--TTTEEEEEEEECHHHHHHHHHHHHHHHGGGEEEEEEEEEECTTHHHHHHS------CCC
T ss_pred HHHhccCCcEEEEEEe--e--cCceEEEEEEccHHHHHHHHHHHHHHhhceEEEEEEeCCCCHHHHHHHhc------ccc
Confidence 4556677777765432 1 2345678999999999999999998887622110 0000000000 001
Q ss_pred eeCCCceeeeecCCch-HH---HHHHHHhCCeEEeccCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhh
Q 005922 226 KIPNNKVGLVIGKGGE-TI---KNMQARTGARIQVIPLHLPPGDTSTERTVQIDGTSEQIESAKQLVNEVISE 294 (669)
Q Consensus 226 ~VP~~~vG~IIGKGGs-tI---K~Iqe~TGArIqI~~~~~ppge~s~er~VtItG~peqVq~Ak~LI~dlL~e 294 (669)
....+-+|+|--++-. -| ....+.+.++|..... ..+ .....+|.|+|+...|+.|.+...+.+++
T Consensus 91 ~~~~~AlGiie~~~~~~ai~AaD~a~KAA~V~lv~~~~--~~g-~~g~~~~~i~GdvsaV~~Av~a~~~~~~~ 160 (192)
T 3n79_A 91 VDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHM--AFG-IGGKCYMVVAGDVSDVNNAVTVASESAGE 160 (192)
T ss_dssp CSCCSEEEEEEEESHHHHHHHHHHHHHTSSCEEEEEEE--SSS-TTSEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEecCHHHHHHHHHHHHhHCCcEEEEEEe--ccc-cCCEEEEEEEECHHHHHHHHHHHHHHHHh
Confidence 1233556777655422 22 1233445555544321 111 13356799999999999999999888765
Done!