Query 005924
Match_columns 669
No_of_seqs 401 out of 3216
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 4E-111 8E-116 884.4 46.0 546 84-668 1-549 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 9E-107 2E-111 904.0 44.8 573 73-668 36-619 (645)
3 PRK10953 cysJ sulfite reductas 100.0 3E-101 8E-106 874.9 59.8 513 82-668 60-574 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 1.3E-98 3E-103 858.0 59.2 512 83-668 58-571 (597)
5 COG0369 CysJ Sulfite reductase 100.0 6.1E-96 1E-100 819.8 48.5 514 82-667 46-560 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 7.6E-74 1.6E-78 630.1 42.2 370 291-668 2-390 (416)
7 cd06203 methionine_synthase_re 100.0 4.4E-72 9.6E-77 613.1 40.5 356 299-668 2-372 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 6.5E-72 1.4E-76 609.5 39.7 354 299-668 2-356 (382)
9 cd06202 Nitric_oxide_synthase 100.0 1.7E-71 3.7E-76 609.6 41.5 360 299-668 2-376 (406)
10 cd06206 bifunctional_CYPOR The 100.0 9.3E-69 2E-73 585.1 40.6 350 298-668 1-354 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 8.3E-66 1.8E-70 556.8 36.0 330 298-668 1-334 (360)
12 PRK06214 sulfite reductase; Pr 100.0 2.9E-65 6.3E-70 569.8 39.2 343 286-668 160-504 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 2.9E-49 6.2E-54 399.6 20.9 218 288-511 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 3E-37 6.6E-42 331.7 27.1 249 289-667 85-344 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3E-33 6.5E-38 291.0 26.0 192 470-668 47-241 (267)
16 PRK09004 FMN-binding protein M 100.0 1.9E-33 4E-38 266.1 17.9 144 83-239 1-146 (146)
17 PRK08105 flavodoxin; Provision 100.0 3.9E-33 8.4E-38 264.8 18.1 145 83-239 1-147 (149)
18 PRK05723 flavodoxin; Provision 100.0 7.6E-33 1.6E-37 262.9 17.7 145 84-240 1-150 (151)
19 TIGR03224 benzo_boxA benzoyl-C 100.0 2.8E-31 6.1E-36 291.6 28.3 246 289-667 137-388 (411)
20 cd06201 SiR_like2 Cytochrome p 100.0 5.1E-31 1.1E-35 277.5 28.7 171 471-668 100-271 (289)
21 PLN03116 ferredoxin--NADP+ red 100.0 5.8E-31 1.2E-35 279.4 28.1 251 289-667 19-284 (307)
22 cd06208 CYPOR_like_FNR These f 100.0 6.7E-30 1.5E-34 268.7 28.2 190 469-666 62-263 (286)
23 cd06200 SiR_like1 Cytochrome p 100.0 1E-30 2.2E-35 268.9 18.7 195 455-668 31-229 (245)
24 PF00258 Flavodoxin_1: Flavodo 99.9 8.1E-27 1.7E-31 219.9 10.8 138 88-231 1-143 (143)
25 PRK07308 flavodoxin; Validated 99.9 1.8E-25 3.8E-30 211.9 17.4 140 83-235 1-142 (146)
26 cd06189 flavin_oxioreductase N 99.9 2E-25 4.3E-30 226.4 15.4 183 454-663 24-211 (224)
27 cd00322 FNR_like Ferredoxin re 99.9 3.1E-25 6.7E-30 223.7 15.9 188 455-664 22-213 (223)
28 cd06188 NADH_quinone_reductase 99.9 3.1E-25 6.8E-30 233.0 15.8 179 471-664 86-271 (283)
29 PRK10926 ferredoxin-NADP reduc 99.9 4.7E-25 1E-29 227.3 15.0 187 455-664 30-228 (248)
30 PRK08051 fre FMN reductase; Va 99.9 7.3E-25 1.6E-29 223.6 14.8 182 455-663 29-216 (232)
31 PRK07609 CDP-6-deoxy-delta-3,4 99.9 6.8E-25 1.5E-29 236.3 15.2 181 456-663 132-319 (339)
32 cd06211 phenol_2-monooxygenase 99.9 8.7E-25 1.9E-29 223.7 15.3 183 455-663 35-225 (238)
33 PRK05464 Na(+)-translocating N 99.9 1.2E-24 2.7E-29 239.8 15.4 180 469-663 208-394 (409)
34 cd06190 T4MO_e_transfer_like T 99.9 2.9E-24 6.3E-29 218.8 15.8 186 455-664 23-218 (232)
35 cd06210 MMO_FAD_NAD_binding Me 99.9 3.4E-24 7.3E-29 218.9 16.4 183 455-663 34-222 (236)
36 cd06187 O2ase_reductase_like T 99.9 2.9E-24 6.3E-29 217.4 15.5 181 456-663 24-211 (224)
37 cd06209 BenDO_FAD_NAD Benzoate 99.9 3.4E-24 7.5E-29 217.8 15.9 180 455-663 30-214 (228)
38 PRK13289 bifunctional nitric o 99.9 3E-24 6.5E-29 236.3 16.4 184 456-664 185-380 (399)
39 TIGR01941 nqrF NADH:ubiquinone 99.9 4.3E-24 9.3E-29 235.2 16.8 180 469-663 204-390 (405)
40 PRK11872 antC anthranilate dio 99.9 4.3E-24 9.4E-29 230.0 16.5 180 456-664 137-323 (340)
41 PRK06703 flavodoxin; Provision 99.9 1.2E-23 2.5E-28 200.5 17.4 146 83-241 1-149 (151)
42 cd06212 monooxygenase_like The 99.9 4.5E-24 9.8E-29 217.5 15.3 183 455-664 29-219 (232)
43 cd06191 FNR_iron_sulfur_bindin 99.9 4.9E-24 1.1E-28 217.1 14.6 185 456-663 28-218 (231)
44 PRK08345 cytochrome-c3 hydroge 99.9 4E-24 8.8E-29 225.2 14.5 180 456-664 38-234 (289)
45 cd06195 FNR1 Ferredoxin-NADP+ 99.9 5.9E-24 1.3E-28 218.0 14.8 186 456-664 25-223 (241)
46 PRK10684 HCP oxidoreductase, N 99.9 7.4E-24 1.6E-28 227.6 15.6 184 456-664 37-225 (332)
47 cd06194 FNR_N-term_Iron_sulfur 99.9 1.7E-23 3.7E-28 211.7 17.0 182 456-663 24-208 (222)
48 PRK12359 flavodoxin FldB; Prov 99.9 7.4E-23 1.6E-27 198.0 18.0 143 84-241 1-170 (172)
49 cd06213 oxygenase_e_transfer_s 99.9 2.5E-23 5.4E-28 211.4 15.1 178 456-663 28-214 (227)
50 cd06221 sulfite_reductase_like 99.9 2.5E-23 5.3E-28 215.1 14.3 181 455-664 27-212 (253)
51 PRK05713 hypothetical protein; 99.9 3.2E-23 6.9E-28 220.8 14.3 175 456-663 119-295 (312)
52 cd06215 FNR_iron_sulfur_bindin 99.9 6E-23 1.3E-27 208.8 15.6 184 456-663 28-218 (231)
53 cd06184 flavohem_like_fad_nad_ 99.9 6.9E-23 1.5E-27 210.7 15.7 184 456-664 37-231 (247)
54 cd06196 FNR_like_1 Ferredoxin 99.9 7.3E-23 1.6E-27 206.5 14.1 177 455-664 27-208 (218)
55 cd06216 FNR_iron_sulfur_bindin 99.9 7.9E-23 1.7E-27 209.9 13.9 180 456-663 46-231 (243)
56 cd06217 FNR_iron_sulfur_bindin 99.9 1.6E-22 3.4E-27 206.3 14.4 183 456-664 31-223 (235)
57 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.9E-22 4E-27 218.4 15.3 187 455-664 32-229 (352)
58 cd06214 PA_degradation_oxidore 99.9 2.7E-22 5.8E-27 205.4 15.4 187 455-664 32-228 (241)
59 PRK08221 anaerobic sulfite red 99.9 1.8E-22 3.9E-27 209.9 14.2 175 456-664 33-214 (263)
60 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.5E-22 5.3E-27 206.8 14.8 170 456-663 25-201 (246)
61 cd06183 cyt_b5_reduct_like Cyt 99.9 4.2E-22 9.1E-27 202.8 15.2 185 455-663 28-223 (234)
62 COG1018 Hmp Flavodoxin reducta 99.9 5.1E-22 1.1E-26 205.6 15.6 177 456-663 35-217 (266)
63 cd06198 FNR_like_3 NAD(P) bind 99.9 4.4E-22 9.6E-27 200.6 14.3 177 455-663 22-202 (216)
64 PRK09271 flavodoxin; Provision 99.9 9E-22 2E-26 189.4 15.5 143 84-240 1-148 (160)
65 PRK06756 flavodoxin; Provision 99.9 1.8E-21 4E-26 184.8 17.1 137 83-233 1-138 (148)
66 PTZ00274 cytochrome b5 reducta 99.9 3.5E-22 7.5E-27 212.8 13.3 184 456-660 82-281 (325)
67 TIGR02911 sulfite_red_B sulfit 99.9 5.5E-22 1.2E-26 206.0 13.9 177 456-664 31-212 (261)
68 PTZ00319 NADH-cytochrome B5 re 99.9 1.1E-21 2.4E-26 207.5 15.7 192 456-663 64-289 (300)
69 PRK11921 metallo-beta-lactamas 99.9 8.8E-22 1.9E-26 216.1 12.4 186 9-238 198-392 (394)
70 cd06185 PDR_like Phthalate dio 99.9 2.7E-21 5.9E-26 194.0 14.7 172 455-663 25-197 (211)
71 TIGR01752 flav_long flavodoxin 99.9 1.4E-20 3.1E-25 182.4 16.5 140 85-239 1-166 (167)
72 TIGR01753 flav_short flavodoxi 99.9 1.2E-20 2.6E-25 176.7 15.2 135 86-234 1-138 (140)
73 cd06197 FNR_like_2 FAD/NAD(P) 99.9 4.9E-21 1.1E-25 193.9 13.4 158 456-664 26-212 (220)
74 COG0543 UbiB 2-polyprenylpheno 99.8 7.7E-21 1.7E-25 196.2 14.9 176 455-663 35-213 (252)
75 PRK00054 dihydroorotate dehydr 99.8 6.7E-21 1.4E-25 196.6 13.4 165 456-663 32-202 (250)
76 cd06220 DHOD_e_trans_like2 FAD 99.8 1.1E-20 2.4E-25 193.0 13.9 163 455-663 23-188 (233)
77 cd06192 DHOD_e_trans_like FAD/ 99.8 2.5E-20 5.4E-25 191.5 14.2 171 456-664 25-200 (243)
78 TIGR01754 flav_RNR ribonucleot 99.8 5.1E-20 1.1E-24 173.4 14.9 131 84-235 1-139 (140)
79 PRK06222 ferredoxin-NADP(+) re 99.8 2.1E-20 4.5E-25 196.2 12.4 171 456-663 28-202 (281)
80 PRK05452 anaerobic nitric oxid 99.8 2.4E-20 5.2E-25 208.7 13.7 188 10-240 203-397 (479)
81 KOG1160 Fe-S oxidoreductase [E 99.8 4.6E-20 1E-24 193.1 13.6 144 83-241 46-194 (601)
82 cd06219 DHOD_e_trans_like1 FAD 99.8 4.2E-20 9.2E-25 190.5 13.0 172 455-663 26-201 (248)
83 COG0716 FldA Flavodoxins [Ener 99.8 4.2E-19 9.1E-24 169.3 15.8 143 83-238 1-150 (151)
84 PLN02252 nitrate reductase [NA 99.8 1.5E-19 3.3E-24 213.8 15.1 193 456-663 665-877 (888)
85 PRK09267 flavodoxin FldA; Vali 99.8 1.1E-18 2.3E-23 169.6 17.4 142 83-239 1-167 (169)
86 PRK05802 hypothetical protein; 99.8 7.2E-20 1.6E-24 195.1 10.0 168 457-663 96-275 (320)
87 KOG0534 NADH-cytochrome b-5 re 99.8 8.5E-19 1.9E-23 180.8 15.7 179 457-662 83-274 (286)
88 COG2871 NqrF Na+-transporting 99.8 4.1E-19 8.9E-24 177.5 12.8 180 470-664 210-396 (410)
89 PTZ00306 NADH-dependent fumara 99.8 7.2E-19 1.6E-23 215.9 14.4 186 456-664 948-1151(1167)
90 COG4097 Predicted ferric reduc 99.8 1.8E-18 3.9E-23 179.2 13.7 161 469-663 260-422 (438)
91 PRK12778 putative bifunctional 99.7 1.6E-17 3.4E-22 196.8 13.8 171 456-663 28-202 (752)
92 cd06193 siderophore_interactin 99.7 8.3E-18 1.8E-22 172.0 9.6 170 457-663 28-219 (235)
93 cd06186 NOX_Duox_like_FAD_NADP 99.7 1.8E-17 4E-22 166.1 11.6 169 455-663 24-197 (210)
94 COG0426 FpaA Uncharacterized f 99.7 4.1E-17 9E-22 173.7 10.1 176 8-230 198-378 (388)
95 PF00175 NAD_binding_1: Oxidor 99.7 5.7E-17 1.2E-21 145.1 9.1 104 548-659 1-109 (109)
96 PRK12779 putative bifunctional 99.7 2.1E-16 4.6E-21 189.5 15.7 181 456-663 677-868 (944)
97 PRK05569 flavodoxin; Provision 99.7 1.1E-15 2.3E-20 143.9 14.6 116 83-215 1-118 (141)
98 PRK05568 flavodoxin; Provision 99.7 9.4E-16 2E-20 144.4 13.4 117 83-217 1-119 (142)
99 TIGR00333 nrdI ribonucleoside- 99.6 6.9E-16 1.5E-20 141.1 10.1 92 88-206 1-93 (125)
100 PRK12775 putative trifunctiona 99.6 2.1E-15 4.5E-20 182.4 13.7 170 456-663 28-202 (1006)
101 PRK03600 nrdI ribonucleotide r 99.5 7.4E-13 1.6E-17 123.1 14.0 122 85-237 2-130 (134)
102 PRK02551 flavoprotein NrdI; Pr 99.5 8.3E-13 1.8E-17 125.0 14.4 136 83-233 1-144 (154)
103 PLN02844 oxidoreductase/ferric 99.4 5.8E-13 1.3E-17 154.1 13.7 184 455-651 338-536 (722)
104 PRK06242 flavodoxin; Provision 99.4 7.9E-13 1.7E-17 125.6 11.6 108 84-215 1-109 (150)
105 PLN02631 ferric-chelate reduct 99.4 4.2E-13 9.1E-18 154.6 11.3 149 455-619 334-493 (699)
106 PLN02292 ferric-chelate reduct 99.4 2.1E-12 4.5E-17 149.2 14.2 179 456-651 352-547 (702)
107 PRK03767 NAD(P)H:quinone oxido 99.3 2.3E-11 4.9E-16 121.5 14.3 128 83-214 1-143 (200)
108 TIGR01755 flav_wrbA NAD(P)H:qu 99.3 3.2E-11 6.9E-16 120.1 14.6 128 84-214 1-142 (197)
109 PRK11104 hemG protoporphyrinog 99.3 4.2E-11 9.1E-16 117.2 12.7 87 84-186 1-87 (177)
110 KOG3378 Globins and related he 99.2 4.9E-12 1.1E-16 126.3 3.1 175 455-664 180-368 (385)
111 PRK07116 flavodoxin; Provision 99.1 7.1E-10 1.5E-14 106.8 12.0 133 83-235 2-158 (160)
112 PF12724 Flavodoxin_5: Flavodo 99.0 2.3E-09 5E-14 101.3 12.2 84 87-188 1-86 (143)
113 PF07972 Flavodoxin_NdrI: NrdI 98.9 5.2E-09 1.1E-13 95.4 8.8 115 88-231 1-120 (122)
114 PF03358 FMN_red: NADPH-depend 98.8 3.9E-08 8.5E-13 93.4 13.3 125 84-214 1-142 (152)
115 COG1780 NrdI Protein involved 98.8 5.5E-08 1.2E-12 88.6 11.3 127 85-239 2-133 (141)
116 PF12641 Flavodoxin_3: Flavodo 98.7 5.3E-08 1.2E-12 93.5 10.5 94 87-206 1-98 (160)
117 PF08030 NAD_binding_6: Ferric 98.6 1E-07 2.2E-12 90.8 8.4 74 545-618 3-79 (156)
118 COG4635 HemG Flavodoxin [Energ 98.6 8.7E-08 1.9E-12 89.5 6.8 108 84-207 1-111 (175)
119 PF12682 Flavodoxin_4: Flavodo 98.5 1.2E-06 2.5E-11 84.1 11.5 132 85-235 1-156 (156)
120 PRK10569 NAD(P)H-dependent FMN 98.4 7E-06 1.5E-10 81.4 16.4 150 84-242 1-171 (191)
121 PRK06567 putative bifunctional 98.4 1.1E-06 2.4E-11 104.3 10.2 95 443-557 804-907 (1028)
122 TIGR03567 FMN_reduc_SsuE FMN r 98.3 2.4E-05 5.2E-10 76.2 15.3 119 85-212 1-132 (171)
123 KOG0039 Ferric reductase, NADH 98.2 3.1E-06 6.8E-11 98.5 9.9 134 455-601 381-536 (646)
124 PRK00170 azoreductase; Reviewe 98.2 5.7E-05 1.2E-09 75.2 17.0 157 83-241 1-197 (201)
125 PRK06934 flavodoxin; Provision 98.1 3E-05 6.5E-10 78.2 12.9 131 87-235 63-217 (221)
126 TIGR03566 FMN_reduc_MsuE FMN r 98.1 5E-05 1.1E-09 74.1 14.1 120 85-212 1-135 (174)
127 PRK09739 hypothetical protein; 98.1 9.9E-05 2.1E-09 73.7 16.1 157 83-242 3-197 (199)
128 PRK01355 azoreductase; Reviewe 98.1 0.00013 2.8E-09 72.9 16.8 158 83-241 1-194 (199)
129 PF00970 FAD_binding_6: Oxidor 98.0 2.7E-06 5.9E-11 74.7 2.0 67 455-537 29-98 (99)
130 PRK13556 azoreductase; Provisi 97.9 0.00046 1E-08 69.3 17.5 157 83-241 1-203 (208)
131 PF02525 Flavodoxin_2: Flavodo 97.9 0.00032 6.9E-09 69.8 15.9 152 84-239 1-199 (199)
132 COG0655 WrbA Multimeric flavod 97.9 9.2E-05 2E-09 74.4 11.1 123 85-212 5-148 (207)
133 TIGR02690 resist_ArsH arsenica 97.4 0.0078 1.7E-07 60.9 17.3 127 82-213 25-162 (219)
134 PRK04930 glutathione-regulated 97.1 0.04 8.6E-07 54.4 17.4 159 80-242 2-178 (184)
135 PRK13555 azoreductase; Provisi 97.0 0.044 9.6E-07 55.1 17.9 129 83-212 1-175 (208)
136 KOG3135 1,4-benzoquinone reduc 96.4 0.012 2.5E-07 55.9 7.7 131 83-218 1-146 (203)
137 COG0431 Predicted flavoprotein 95.9 0.087 1.9E-06 52.0 11.4 122 84-214 1-136 (184)
138 COG2375 ViuB Siderophore-inter 95.3 0.38 8.3E-06 49.9 13.7 157 468-663 84-242 (265)
139 PRK00871 glutathione-regulated 95.1 0.55 1.2E-05 46.0 13.8 152 86-241 2-169 (176)
140 COG2249 MdaB Putative NADPH-qu 92.7 2.5 5.4E-05 41.9 13.4 156 84-242 1-187 (189)
141 PRK02261 methylaspartate mutas 89.9 7.8 0.00017 36.3 12.9 129 84-236 2-134 (137)
142 KOG0560 Sulfite reductase (fer 87.2 0.25 5.3E-06 54.4 1.0 61 182-242 1-69 (638)
143 TIGR01501 MthylAspMutase methy 86.7 13 0.00029 34.7 12.1 127 87-234 3-130 (134)
144 cd02072 Glm_B12_BD B12 binding 81.9 15 0.00032 34.1 10.1 114 88-216 2-116 (128)
145 PF08022 FAD_binding_8: FAD-bi 80.5 0.28 6.2E-06 43.6 -1.7 79 443-534 15-102 (105)
146 PF08021 FAD_binding_9: Sidero 75.5 2.7 5.9E-05 38.2 3.1 53 469-536 65-117 (117)
147 PRK05907 hypothetical protein; 71.3 87 0.0019 33.5 13.9 132 76-238 11-149 (311)
148 KOG1160 Fe-S oxidoreductase [E 70.5 3.5 7.6E-05 45.3 2.9 127 82-215 356-488 (601)
149 COG1182 AcpD Acyl carrier prot 67.4 1.4E+02 0.0031 29.9 16.1 129 83-212 1-172 (202)
150 cd05566 PTS_IIB_galactitol PTS 63.1 20 0.00044 30.4 5.8 34 84-119 1-34 (89)
151 PF06283 ThuA: Trehalose utili 61.3 30 0.00065 34.7 7.6 75 85-167 1-80 (217)
152 PRK05752 uroporphyrinogen-III 59.2 42 0.00091 34.5 8.5 90 98-213 12-106 (255)
153 TIGR00640 acid_CoA_mut_C methy 58.9 82 0.0018 29.2 9.5 111 86-216 3-113 (132)
154 TIGR02667 moaB_proteo molybden 58.6 12 0.00025 36.2 3.9 57 175-232 2-59 (163)
155 cd06533 Glyco_transf_WecG_TagA 58.2 47 0.001 32.2 8.1 40 74-118 37-76 (171)
156 cd00578 L-fuc_L-ara-isomerases 56.9 95 0.0021 34.9 11.5 128 85-233 2-150 (452)
157 PF00970 FAD_binding_6: Oxidor 54.5 38 0.00082 29.0 6.2 38 297-339 2-41 (99)
158 cd02067 B12-binding B12 bindin 53.5 1.6E+02 0.0035 26.1 10.6 108 88-215 2-109 (119)
159 COG1587 HemD Uroporphyrinogen- 53.0 40 0.00088 34.6 7.1 91 99-214 11-103 (248)
160 cd05009 SIS_GlmS_GlmD_2 SIS (S 52.9 62 0.0013 29.9 7.8 82 75-167 6-87 (153)
161 PRK14192 bifunctional 5,10-met 52.0 3.1E+02 0.0068 28.9 14.5 48 154-211 139-186 (283)
162 PRK05928 hemD uroporphyrinogen 51.5 76 0.0016 31.9 8.8 87 101-212 13-103 (249)
163 PRK08811 uroporphyrinogen-III 51.0 83 0.0018 32.8 9.1 88 98-213 27-118 (266)
164 PRK09622 porA pyruvate flavodo 48.5 1.4E+02 0.003 33.3 10.8 107 84-201 269-381 (407)
165 PRK10310 PTS system galactitol 48.0 32 0.00069 29.9 4.6 35 85-121 4-38 (94)
166 KOG4530 Predicted flavoprotein 47.4 1.1E+02 0.0023 29.6 8.0 43 136-185 84-126 (199)
167 PF03808 Glyco_tran_WecB: Glyc 47.2 1.4E+02 0.0031 28.8 9.5 112 76-208 41-155 (172)
168 PF13433 Peripla_BP_5: Peripla 46.3 85 0.0018 34.4 8.4 103 83-215 66-169 (363)
169 PF09651 Cas_APE2256: CRISPR-a 45.6 35 0.00077 31.8 4.8 40 86-127 24-63 (136)
170 PRK07168 bifunctional uroporph 45.1 79 0.0017 36.0 8.3 89 98-211 260-351 (474)
171 cd06578 HemD Uroporphyrinogen- 44.7 87 0.0019 31.0 7.9 89 101-214 10-102 (239)
172 cd06212 monooxygenase_like The 44.5 46 0.00099 33.5 5.8 41 295-340 1-42 (232)
173 COG1587 HemD Uroporphyrinogen- 42.0 1.3E+02 0.0029 30.8 8.9 100 83-213 123-227 (248)
174 cd05563 PTS_IIB_ascorbate PTS_ 42.0 54 0.0012 27.5 5.0 27 85-111 1-27 (86)
175 cd07363 45_DOPA_Dioxygenase Th 41.4 80 0.0017 32.6 7.1 84 97-190 79-163 (253)
176 PRK09212 pyruvate dehydrogenas 41.3 60 0.0013 35.0 6.4 78 81-167 200-278 (327)
177 cd07371 2A5CPDO_AB The alpha a 41.1 1E+02 0.0023 32.1 8.0 104 97-207 86-205 (268)
178 PF02302 PTS_IIB: PTS system, 41.1 54 0.0012 27.6 4.9 37 85-123 1-37 (90)
179 PF09314 DUF1972: Domain of un 40.8 3.7E+02 0.008 26.6 11.6 119 83-215 1-125 (185)
180 cd05567 PTS_IIB_mannitol PTS_I 40.3 71 0.0015 27.1 5.5 40 84-125 1-42 (87)
181 cd06578 HemD Uroporphyrinogen- 40.0 1.2E+02 0.0026 30.0 8.1 101 84-214 121-226 (239)
182 cd00133 PTS_IIB PTS_IIB: subun 39.9 51 0.0011 26.7 4.5 29 85-115 1-29 (84)
183 PRK14194 bifunctional 5,10-met 39.8 5E+02 0.011 27.8 15.5 117 83-212 33-187 (301)
184 PRK09189 uroporphyrinogen-III 39.2 88 0.0019 31.7 7.0 85 101-213 12-98 (240)
185 PRK14188 bifunctional 5,10-met 38.9 5.1E+02 0.011 27.6 14.8 126 74-212 20-186 (296)
186 cd02071 MM_CoA_mut_B12_BD meth 38.4 3E+02 0.0065 24.8 9.9 109 88-217 2-111 (122)
187 PRK10427 putative PTS system f 37.7 1.1E+02 0.0025 27.7 6.6 56 83-146 2-65 (114)
188 cd06200 SiR_like1 Cytochrome p 37.7 59 0.0013 33.3 5.4 38 303-340 6-44 (245)
189 COG0429 Predicted hydrolase of 37.1 1.5E+02 0.0032 32.1 8.3 97 84-210 76-172 (345)
190 cd03142 GATase1_ThuA Type 1 gl 37.0 1.4E+02 0.003 30.2 7.8 59 100-167 24-87 (215)
191 PRK14180 bifunctional 5,10-met 36.8 5.4E+02 0.012 27.3 13.6 127 74-212 19-186 (282)
192 PRK09590 celB cellobiose phosp 36.7 49 0.0011 29.5 4.0 34 83-119 1-34 (104)
193 cd00758 MoCF_BD MoCF_BD: molyb 36.3 33 0.00072 31.6 3.0 54 179-232 1-56 (133)
194 PF06144 DNA_pol3_delta: DNA p 35.7 2.3E+02 0.005 26.7 8.9 131 87-238 1-139 (172)
195 PRK14190 bifunctional 5,10-met 35.1 5.7E+02 0.012 27.1 13.1 117 83-212 32-186 (284)
196 PRK08366 vorA 2-ketoisovalerat 35.0 2.3E+02 0.0051 31.4 9.8 107 84-202 261-372 (390)
197 cd05568 PTS_IIB_bgl_like PTS_I 34.7 22 0.00048 29.5 1.5 27 85-111 2-28 (85)
198 cd06393 PBP1_iGluR_Kainate_Glu 34.3 1.9E+02 0.0041 31.5 9.1 92 82-189 138-230 (384)
199 COG1810 Uncharacterized protei 34.3 5E+02 0.011 26.4 11.0 125 83-238 1-132 (224)
200 cd06386 PBP1_NPR_C_like Ligand 32.9 2.1E+02 0.0045 31.2 9.2 91 82-186 136-230 (387)
201 PRK08367 porA pyruvate ferredo 32.2 2.5E+02 0.0054 31.2 9.5 104 84-199 263-371 (394)
202 PF04392 ABC_sub_bind: ABC tra 32.2 61 0.0013 34.0 4.6 60 82-144 130-190 (294)
203 PTZ00110 helicase; Provisional 32.1 4.7E+02 0.01 30.3 12.2 112 82-208 376-500 (545)
204 cd06352 PBP1_NPR_GC_like Ligan 31.9 3.2E+02 0.0069 29.5 10.4 91 82-185 136-229 (389)
205 cd06196 FNR_like_1 Ferredoxin 31.0 89 0.0019 31.0 5.4 40 296-341 2-41 (218)
206 COG2185 Sbm Methylmalonyl-CoA 30.7 2.7E+02 0.0057 26.4 7.9 110 84-216 13-123 (143)
207 PRK07452 DNA polymerase III su 30.6 5.2E+02 0.011 27.3 11.6 136 84-236 1-143 (326)
208 cd06209 BenDO_FAD_NAD Benzoate 30.0 1.2E+02 0.0025 30.4 6.1 41 295-340 2-43 (228)
209 cd06217 FNR_iron_sulfur_bindin 29.8 1E+02 0.0022 30.8 5.6 40 296-340 3-43 (235)
210 COG3414 SgaB Phosphotransferas 29.8 1.6E+02 0.0034 25.8 5.9 42 83-126 1-44 (93)
211 PRK09004 FMN-binding protein M 29.5 2.2E+02 0.0048 26.7 7.5 95 140-242 3-112 (146)
212 cd06355 PBP1_FmdD_like Peripla 29.3 4.6E+02 0.0099 27.9 10.9 48 158-214 120-167 (348)
213 COG4123 Predicted O-methyltran 29.2 2.1E+02 0.0047 29.6 7.8 20 543-562 45-64 (248)
214 PRK08105 flavodoxin; Provision 29.2 3.2E+02 0.0069 25.7 8.5 96 140-242 3-114 (149)
215 PF02826 2-Hacid_dh_C: D-isome 28.8 80 0.0017 30.6 4.5 33 173-213 32-64 (178)
216 PRK00054 dihydroorotate dehydr 28.8 1.2E+02 0.0027 30.9 6.2 42 294-341 4-45 (250)
217 PRK14189 bifunctional 5,10-met 28.7 7.3E+02 0.016 26.3 15.4 119 83-213 32-187 (285)
218 cd05211 NAD_bind_Glu_Leu_Phe_V 28.7 92 0.002 31.5 5.0 31 175-213 21-51 (217)
219 PTZ00182 3-methyl-2-oxobutanat 28.6 88 0.0019 34.2 5.2 67 81-153 232-299 (355)
220 PRK14187 bifunctional 5,10-met 28.4 7.5E+02 0.016 26.4 13.9 118 83-212 32-188 (294)
221 cd01536 PBP1_ABC_sugar_binding 28.1 5.9E+02 0.013 25.0 13.2 37 86-124 2-39 (267)
222 cd07373 2A5CPDO_A The alpha su 28.0 1.6E+02 0.0034 30.8 6.8 86 96-190 88-179 (271)
223 cd06211 phenol_2-monooxygenase 27.9 1.3E+02 0.0029 30.2 6.2 42 294-340 6-48 (238)
224 PRK15438 erythronate-4-phospha 27.7 1.2E+02 0.0027 33.4 6.1 33 173-213 112-144 (378)
225 PF02780 Transketolase_C: Tran 27.5 11 0.00023 34.4 -1.9 57 83-145 10-67 (124)
226 cd00886 MogA_MoaB MogA_MoaB fa 27.5 69 0.0015 30.3 3.6 54 178-231 1-56 (152)
227 TIGR00177 molyb_syn molybdenum 27.4 50 0.0011 31.0 2.6 54 179-232 2-64 (144)
228 cd01075 NAD_bind_Leu_Phe_Val_D 26.9 1.2E+02 0.0026 30.2 5.4 32 174-213 25-56 (200)
229 TIGR00853 pts-lac PTS system, 26.8 85 0.0018 27.4 3.8 35 83-120 3-37 (95)
230 PF13684 Dak1_2: Dihydroxyacet 26.7 1.2E+02 0.0026 32.5 5.7 47 74-122 254-301 (313)
231 cd06214 PA_degradation_oxidore 26.6 90 0.0019 31.4 4.6 40 295-339 2-44 (241)
232 PRK15083 PTS system mannitol-s 26.6 62 0.0013 38.3 3.8 38 83-122 378-416 (639)
233 TIGR00696 wecB_tagA_cpsF bacte 26.6 2.3E+02 0.0049 27.7 7.2 34 82-120 47-80 (177)
234 cd06388 PBP1_iGluR_AMPA_GluR4 26.2 3.2E+02 0.0069 29.8 9.1 79 82-169 123-202 (371)
235 PRK12571 1-deoxy-D-xylulose-5- 25.8 1.8E+02 0.0039 34.5 7.4 58 82-145 504-561 (641)
236 PRK14177 bifunctional 5,10-met 25.2 8.4E+02 0.018 25.9 13.6 127 74-212 21-187 (284)
237 KOG4132 Uroporphyrinogen III s 25.1 1.7E+02 0.0038 29.8 6.0 17 91-107 111-127 (260)
238 CHL00144 odpB pyruvate dehydro 25.1 1.1E+02 0.0025 32.9 5.2 95 82-188 201-296 (327)
239 KOG0025 Zn2+-binding dehydroge 25.0 97 0.0021 32.9 4.3 65 325-398 95-160 (354)
240 PF04908 SH3BGR: SH3-binding, 24.6 1.6E+02 0.0036 25.9 5.2 39 84-124 1-41 (99)
241 PRK10684 HCP oxidoreductase, N 24.6 1.6E+02 0.0035 31.5 6.3 45 291-341 6-50 (332)
242 COG0761 lytB 4-Hydroxy-3-methy 24.0 4E+02 0.0086 28.3 8.6 119 87-213 159-290 (294)
243 cd06184 flavohem_like_fad_nad_ 24.0 2E+02 0.0043 29.1 6.6 42 295-341 7-50 (247)
244 PLN02928 oxidoreductase family 23.7 1.6E+02 0.0036 31.9 6.1 32 174-213 156-187 (347)
245 cd06389 PBP1_iGluR_AMPA_GluR2 23.5 3.7E+02 0.0081 29.2 9.0 88 82-184 117-211 (370)
246 PF00670 AdoHcyase_NAD: S-aden 23.5 1.2E+02 0.0025 29.5 4.3 46 175-234 21-66 (162)
247 PLN02616 tetrahydrofolate dehy 23.4 1E+03 0.022 26.2 13.6 118 83-212 103-259 (364)
248 PRK14182 bifunctional 5,10-met 23.3 9.1E+02 0.02 25.6 12.7 118 83-213 30-186 (282)
249 PRK13608 diacylglycerol glucos 23.3 1.2E+02 0.0026 33.3 5.1 41 82-122 4-45 (391)
250 cd03030 GRX_SH3BGR Glutaredoxi 23.1 1.9E+02 0.0041 25.1 5.2 37 86-124 2-40 (92)
251 PRK06975 bifunctional uroporph 23.1 2.6E+02 0.0057 33.3 8.1 83 100-210 14-101 (656)
252 cd01391 Periplasmic_Binding_Pr 22.9 6E+02 0.013 24.4 9.8 30 82-111 123-152 (269)
253 PF08357 SEFIR: SEFIR domain; 22.7 2.1E+02 0.0047 26.4 6.1 63 84-147 1-67 (150)
254 PF02900 LigB: Catalytic LigB 22.6 3.1E+02 0.0067 28.4 7.8 104 96-207 94-211 (272)
255 PLN02516 methylenetetrahydrofo 22.5 9.6E+02 0.021 25.6 14.1 118 83-212 39-195 (299)
256 PRK14175 bifunctional 5,10-met 22.1 9.6E+02 0.021 25.4 15.2 117 83-212 32-186 (286)
257 cd06189 flavin_oxioreductase N 22.1 1.5E+02 0.0033 29.5 5.2 37 298-340 2-38 (224)
258 TIGR00091 tRNA (guanine-N(7)-) 22.1 7.3E+02 0.016 24.1 10.0 32 631-662 115-146 (194)
259 COG4245 TerY Uncharacterized p 22.0 3.5E+02 0.0076 26.9 7.2 72 93-188 76-148 (207)
260 cd06373 PBP1_NPR_like Ligand b 21.9 6.2E+02 0.013 27.4 10.4 91 82-185 141-236 (396)
261 PF06325 PrmA: Ribosomal prote 21.9 1.7E+02 0.0037 31.1 5.7 104 543-661 162-272 (295)
262 PRK04148 hypothetical protein; 21.9 1.6E+02 0.0035 27.5 4.9 41 160-212 3-43 (134)
263 cd06216 FNR_iron_sulfur_bindin 21.9 1.8E+02 0.0038 29.4 5.7 41 295-340 18-58 (243)
264 PTZ00317 NADP-dependent malic 21.8 3.1E+02 0.0067 31.9 8.0 99 98-209 226-325 (559)
265 PLN02683 pyruvate dehydrogenas 21.8 1.6E+02 0.0034 32.3 5.5 94 82-187 228-322 (356)
266 cd07372 2A5CPDO_B The beta sub 21.5 3.1E+02 0.0066 29.2 7.5 106 96-207 96-226 (294)
267 PF04954 SIP: Siderophore-inte 21.3 3.9E+02 0.0086 23.9 7.3 98 545-664 3-102 (119)
268 cd06385 PBP1_NPR_A Ligand-bind 21.3 4.6E+02 0.0099 28.6 9.2 91 82-185 142-237 (405)
269 cd06268 PBP1_ABC_transporter_L 21.2 5.7E+02 0.012 25.5 9.4 93 83-191 135-228 (298)
270 PF01866 Diphthamide_syn: Puta 21.2 3E+02 0.0065 29.3 7.4 59 82-145 208-267 (307)
271 cd07367 CarBb CarBb is the B s 21.1 4.3E+02 0.0094 27.5 8.5 91 96-191 88-184 (268)
272 cd06213 oxygenase_e_transfer_s 21.0 2E+02 0.0043 28.7 5.8 39 296-340 2-40 (227)
273 PF13607 Succ_CoA_lig: Succiny 20.9 6.5E+02 0.014 23.5 8.8 109 89-214 5-127 (138)
274 PRK07609 CDP-6-deoxy-delta-3,4 20.8 1.8E+02 0.004 31.1 5.8 42 294-340 102-144 (339)
275 smart00852 MoCF_biosynth Proba 20.5 73 0.0016 29.3 2.3 51 182-232 2-55 (135)
276 COG1609 PurR Transcriptional r 20.3 1.1E+03 0.023 25.2 13.5 133 83-234 58-200 (333)
277 PF13380 CoA_binding_2: CoA bi 20.2 2.5E+02 0.0054 25.3 5.6 97 96-217 11-111 (116)
278 PF13458 Peripla_BP_6: Peripla 20.1 7.3E+02 0.016 25.8 10.3 50 156-214 120-169 (343)
279 PRK13609 diacylglycerol glucos 20.1 1.5E+02 0.0033 32.0 5.0 33 82-116 3-35 (380)
280 PRK00257 erythronate-4-phospha 20.1 1.7E+02 0.0036 32.4 5.3 33 173-213 112-144 (381)
281 cd06335 PBP1_ABC_ligand_bindin 20.0 5.2E+02 0.011 27.4 9.1 75 83-169 138-217 (347)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=3.9e-111 Score=884.36 Aligned_cols=546 Identities=33% Similarity=0.567 Sum_probs=481.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
++++|+||||||||+++|+.|.+++.++ +..+.++.+++||.++ |.+..+|||+|||+|+|++|+||+.||.
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~--~~~~~V~s~Deyd~~~------ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRR--GLQCLVMSMDEYDVEK------LLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhc--cCCceEeeccccCHhH------hccCceEEEEEecCCCCCCCccHHHHHH
Confidence 4699999999999999999999999988 8889999999999998 9999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHh
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 241 (669)
+|...+....+|++++|||||||||+|+.||.++|++++||.+|||+.++++|+|||++ +.+..|..|...+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99887777788999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred hhCCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005924 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (669)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 321 (669)
+.......... .|....+..|++..+... +...+... +. -...+-| ++++.|++||+.+|+++++|++|+|
T Consensus 153 i~~p~~~~t~l-~~~~~~~~k~~~l~~~~~-~~~~d~~~-v~----~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F~i 223 (574)
T KOG1159|consen 153 IYPPYRPETDL-IPTVQITTKYSLLELGKA-SDFSDSDI-VL----EPQGQIP--AKLVENRRLTSADHFQDVRLFEFDI 223 (574)
T ss_pred hcCCCCCcccC-CCcccccchhhhhhcccc-ccCCcchh-hh----ccccccc--cchhcceeecCcchhheeeEEEEec
Confidence 77621111110 111223334444333222 11111000 00 0111222 8999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005924 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (669)
Q Consensus 322 ~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~ 401 (669)
+++.+.|+|||++.|+|.|+.+.|++|++.+||++++...+.....+.. +..+-+|+|+|+++++++|+|+++.|+
T Consensus 224 ~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~~~~~~~p~sl~~~lk~~~D~~SvPr 299 (574)
T KOG1159|consen 224 PDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SPLPLLPNPLSLLNLLKYVLDFNSVPR 299 (574)
T ss_pred CCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----ccccccCCchhHHHHHHHhcccccCcc
Confidence 9999999999999999999999999999999999987666655544322 233369999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCC
Q 005924 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (669)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~ 481 (669)
++||..|+.|++|+.|||||++++|++|.++|++|+.+++||++|||++|++++.|++++++++ |.++||+|||||+|.
T Consensus 300 rsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~-P~IrPR~fSIas~~~ 378 (574)
T KOG1159|consen 300 RSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLL-PVIRPRAFSIASSPG 378 (574)
T ss_pred hHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhc-cccccceeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHH
Q 005924 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 561 (669)
Q Consensus 482 ~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsf 561 (669)
.++ ++|+|++|+|++...+.|.|+||+||++|++| +.+++.+++|++.+|.+.++|+||||||||||||||+
T Consensus 379 ~~~--leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~ 450 (574)
T KOG1159|consen 379 AHH--LELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRAL 450 (574)
T ss_pred CCc--eeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCccccCCCCCCCeEEEcCCCCcccHHHH
Confidence 754 99999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhccc-C
Q 005924 562 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLS-K 640 (669)
Q Consensus 562 lq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~-~ 640 (669)
++||..+ ...+..||||||++++||+|++||.++.+.+ .+.|||||+++|+||||+|.+..+++|+++. .
T Consensus 451 i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~ 521 (574)
T KOG1159|consen 451 IQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNL 521 (574)
T ss_pred HHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccccccceeHHHHHHHhhHHHHHHHhcc
Confidence 9999972 2345599999999999999999999988765 3459999999999999999999999999886 7
Q ss_pred CCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 641 EGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+|.|||||++..|.++|..+|.+|+++.
T Consensus 522 gA~~fvaGsS~~MP~~V~~al~eI~~~e 549 (574)
T KOG1159|consen 522 GAYFFVAGSSGKMPKDVKEALIEIVGKE 549 (574)
T ss_pred CCEEEEecCCCCCcHHHHHHHHHHhhhh
Confidence 9999999999899999999999999875
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.4e-107 Score=904.05 Aligned_cols=573 Identities=45% Similarity=0.760 Sum_probs=494.7
Q ss_pred hhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhh-ccCCeEEEEEecCCC
Q 005924 73 EDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGD 151 (669)
Q Consensus 73 ~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-~~~~~vi~~~sTyG~ 151 (669)
.....+++.++.+++|+|+|||||+|.+|.++++.+ .+|. .+.+.+.+|+.-. + ...++++|+.+|||+
T Consensus 36 ~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~---~~~~~~~d~~~~~------l~~~~~l~~~~~at~g~ 105 (645)
T KOG1158|consen 36 YSLKLKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFE---LKVLKVADYDLYA------LEDHEKLLVVVLATYGE 105 (645)
T ss_pred hhHHHHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhcc---ccceeecchhhcc------cccccceeeeeeehhcC
Confidence 466677778899999999999999999999999999 7766 6666666665544 4 466899999999999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 152 G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
|+||+|++.|++|+.+.... ....++|+|||+|+++|++||++++.+|++|+++|++++..+|+|||+.+.|++|..|
T Consensus 106 gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w 183 (645)
T KOG1158|consen 106 GDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTW 183 (645)
T ss_pred CCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHH
Confidence 99999999999999876432 2445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCCeeEEEEEeEEecCCC
Q 005924 232 RELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRVNVAVRRELHKPD 309 (669)
Q Consensus 232 ~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~a~v~~~~~L~~~~ 309 (669)
++.+|+++++.+..+... . .+.......+................... .+...+++..+||.+.++.+++|+++.
T Consensus 184 ~~~~~~~~~~~f~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (645)
T KOG1158|consen 184 KKPLLPELCETFSLEEDE-A--TKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPS 260 (645)
T ss_pred HHHHhHhhhheeeecccc-c--cCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCC
Confidence 999999999977654332 1 11111112221111100000000000011 113367899999999999999999988
Q ss_pred CCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC-CCCCCCCCCCCCCcccHHH
Q 005924 310 SDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG-TPRGSSLTPPFPGPCTLRT 388 (669)
Q Consensus 310 ~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~~~~~~p~p~tl~~ 388 (669)
+.|+|+|+++++.++++.|+||||++|+|.|+.+.|++++++|+++++..+.++....+. ++.+...+.|||.|||+++
T Consensus 261 ~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~ 340 (645)
T KOG1158|consen 261 SDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRT 340 (645)
T ss_pred CceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHH
Confidence 889999999999999999999999999999999999999999999987555554443322 2444567889999999999
Q ss_pred HHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCC
Q 005924 389 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 468 (669)
Q Consensus 389 ~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~ 468 (669)
+|+||+||+++|+|++|+.||.||+|+.||++|+.|+|.+|+.+|.+|+...+++++|||.+||++++|+.++++++ |+
T Consensus 341 ~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l-p~ 419 (645)
T KOG1158|consen 341 ALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL-PR 419 (645)
T ss_pred HHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEecCCCC-CccCCcccHhhhhcCCCCCCCCccEEE--EEEeCCCcccCCCCCCC
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRPSNFKLPANPSVP 545 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~--v~~~~g~F~lp~~~~~p 545 (669)
++||+|||||||..+++++|+++.++.+.+++| +.+.|+||+||+++++| +.++ +.++.+.|+||.||++|
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~s~frlp~dp~~P 493 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGKSMFRLPSDPSTP 493 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecccceecCCCCCCc
Confidence 999999999999999999999999999999886 67889999999999999 5665 77788899999999999
Q ss_pred EEEEecCcccchHHHHHHHHHHHhhcCC--CCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCC-CCccc
Q 005924 546 IIMVGPGTGLAPFRGFLQERMALKQDGA--QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREG-SQKEY 622 (669)
Q Consensus 546 iImIa~GTGIAPfrsflq~r~~~~~~g~--~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~-~~k~y 622 (669)
|||||+||||||||||+|+|..++++|. ..+ +|||||||+++.||+|++||+++.+.|.++++.+||||++ ++|.|
T Consensus 494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~Y 572 (645)
T KOG1158|consen 494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIY 572 (645)
T ss_pred EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCcee
Confidence 9999999999999999999999877663 334 8999999999999999999999999999999999999998 78999
Q ss_pred ccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 623 VQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 623 Vq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
|||+|++++++||++| +++|+|||||++++|+++|.++|.+|+++.
T Consensus 573 VQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~ 619 (645)
T KOG1158|consen 573 VQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKD 619 (645)
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhh
Confidence 9999999999999988 559999999998889999999999999874
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=3.5e-101 Score=874.93 Aligned_cols=513 Identities=29% Similarity=0.494 Sum_probs=451.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.+++++|+|||||||||.+|++|++.+.++ |+.++++++++++..+ |.+++.+||++||||+|+||+|+..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~--g~~~~v~~~~d~~~~~------L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDYKFKQ------IAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCCcEEechHhCCHhH------hccCCeEEEEECCCCCCCCChhHHHH
Confidence 467899999999999999999999999988 8999999999998877 88999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
|+||..... ..|.+++|||||||||+|++||.++|.+|++|+++||+++.+++++|.+ ++++|++|.+.+|++|.+
T Consensus 132 ~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~~--~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVE--YQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccccc--cHHHHHHHHHHHHHHHHh
Confidence 999975431 2399999999999999999999999999999999999999999887754 899999999999999987
Q ss_pred hhCCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005924 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (669)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 321 (669)
....... +.. ... .. . .. .....+++..+||.|+|+.|++|+.++++|+|+|||||+
T Consensus 208 ~~~~~~~------~~~---~~~----~~-~-----~~----~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVAA------PSQ---SVA----TG-A-----VN----EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCccc------ccc---ccc----cc-c-----cc----ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 5432110 000 000 00 0 00 001235778899999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005924 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (669)
Q Consensus 322 ~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~ 401 (669)
++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCC-c
Confidence 9999999999999999999999999999999999998876631 267999999999999985 7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCC
Q 005924 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (669)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~ 481 (669)
+.+|+.++.++.+++ |++|. ++++.+.+|.. .++++|||.+|| ++++++||++++ |+++||+|||||+|.
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll-~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLL-RPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhC-CCCCCeeeecccCCC
Confidence 899999999999854 44442 46677777765 689999999997 689999999999 999999999999998
Q ss_pred CCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHH
Q 005924 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFR 559 (669)
Q Consensus 482 ~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfr 559 (669)
.++++++|+|+++.|.. .|+.+.|+||+||.+ +++| +.|.|++++| .|++|.++.+|+||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 77899999999998874 578889999999996 8888 8999999876 8999988889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhccc
Q 005924 560 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLS 639 (669)
Q Consensus 560 sflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~ 639 (669)
||+|+|... + ..+++|||||||++..||+|++||++|.+.|.++++++||||++.+|+||||+|.++.+++|+++.
T Consensus 470 sflq~r~~~---~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~ 545 (600)
T PRK10953 470 AFMQQRAAD---G-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWIN 545 (600)
T ss_pred HHHHHHHHc---C-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999862 3 458999999999977799999999999999999999999999998899999999999999999999
Q ss_pred CCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 640 KEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 640 ~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
++++|||||+++.|+++|+++|.+|++++
T Consensus 546 ~ga~~YVCG~~~~M~~~V~~~L~~i~~~~ 574 (600)
T PRK10953 546 DGAHIYVCGDANRMAKDVEQALLEVIAEF 574 (600)
T ss_pred CCcEEEEECCCccchHHHHHHHHHHHHHc
Confidence 99999999998789999999999999874
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.3e-98 Score=857.96 Aligned_cols=512 Identities=34% Similarity=0.597 Sum_probs=452.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
.++|+|+|||||||||.+|++|++.+.++ |+.+++.++++++.++ +.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~--g~~~~v~~~~d~~~~~------l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYKFKQ------LKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhC--CCccEEechHHCCHhh------cccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 57899999999999999999999999988 8999999999999887 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
+||.+... ..|++++|+||||||++|++||.++|.+|++|+++||+++.+++.+|++ ++++|++|.+++|+.|...
T Consensus 130 ~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~--~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADLD--YDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCccC--hHHHHHHHHHHHHHHHHhh
Confidence 99976432 2399999999999999999999999999999999999999999988864 8999999999999999875
Q ss_pred hCCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEec
Q 005924 243 LRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVS 322 (669)
Q Consensus 243 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 322 (669)
...... .|. +.+. +.. . .....+++..+||.++|+.|++|+..+++|+|+|||||++
T Consensus 206 ~~~~~~-----~~~------~~~~---~~~----~-----~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGSAS-----TPS------LSET---PAR----S-----QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCccC-----CCc------ceec---ccc----c-----ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 432110 111 0000 000 0 0122346778999999999999999999999999999999
Q ss_pred CCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcH
Q 005924 323 GTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRK 402 (669)
Q Consensus 323 ~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~ 402 (669)
+++++|+|||||+|||+|+++.|+++|++||++++..+++. +.++|++++|++|+||+. ++|
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----------------~~~~tl~~~l~~~~dl~~-~~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----------------GKTIPLFEALITHFELTQ-NTK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----------------CCCcCHHHHHHhceeCCC-CCH
Confidence 99999999999999999999999999999999999877653 126899999999999999 589
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCC
Q 005924 403 AALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF 482 (669)
Q Consensus 403 ~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~ 482 (669)
.||+.||++++|++.++.| ++++.|.+|+. +++++|||.+|| +++++|||++++ |+++||+|||||+|..
T Consensus 325 ~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll-~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLL-RPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhC-cccCCceeeeccCccc
Confidence 9999999999998655433 36788888886 789999999999 899999999999 9999999999999987
Q ss_pred CCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHH
Q 005924 483 APDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (669)
Q Consensus 483 ~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs 560 (669)
++++++|+|++++|.. .|+.+.|+||+||++ +++| +.|.|++++| .|++|.++.+|+||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 7899999999998864 578889999999998 9998 8999999775 89999888899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccC
Q 005924 561 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSK 640 (669)
Q Consensus 561 flq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~ 640 (669)
|+|+|... + ..+++|||||||+..+|++|++||++|.+.+.++++++||||++..++||||+|.++..++|+++.+
T Consensus 468 flq~r~~~---~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~ 543 (597)
T TIGR01931 468 FMQERAED---G-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQE 543 (597)
T ss_pred HHHHHHHc---c-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhC
Confidence 99998762 3 4589999999999656999999999999999999999999998778999999999999999999888
Q ss_pred CCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 641 EGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+++|||||+++.|+++|+++|.+|++++
T Consensus 544 ~a~vYvCG~~~~M~~~V~~~L~~i~~~~ 571 (597)
T TIGR01931 544 GAHIYVCGDAKKMAKDVHQALLDIIAKE 571 (597)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHHh
Confidence 9999999965899999999999999874
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-96 Score=819.82 Aligned_cols=514 Identities=38% Similarity=0.654 Sum_probs=462.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
++..++|+||||||||+.+|+.+++++... |..+.+.++++|+..+ +.....++|++||+|+|++|+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~--g~~~~~~~~~~~~~~~------~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAA--GLQVLVASLDDYKPKD------IAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhc--CCceeecchhhcChhh------HHhhhceEEEEccccCCCCCCchHHH
Confidence 577899999999999999999999999987 7889999999999888 55557899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
+++|.... ...|.+++|+||||||++|+.||.++|.++++|+.+||+++.+++++|+. +.+++..+|...+++.+..
T Consensus 118 ~~~l~~~~--a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGKK--APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhcccc--cccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 99998742 23499999999999999999999999999999999999999999999986 6899999999999999987
Q ss_pred hhCCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005924 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (669)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 321 (669)
.+........ .++.. +. ...++....|+.+.+..|++|+..+++|+|+|+|||+
T Consensus 195 ~~~~~~~~~~--~~~~~-----------~~-------------~~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAAPA--QVATS-----------PQ-------------SESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccccc--cccch-----------hc-------------ccccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 5543221100 00000 00 0223445677899999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005924 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (669)
Q Consensus 322 ~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~ 401 (669)
++++++|+|||+++|||+|+++.|+++|+.|||+++..+.++ +.+.++.++|++|+|+++.|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998665321 34789999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCC
Q 005924 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (669)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~ 481 (669)
|+|+..|+.|+.+++.+++|+.|+ ..+|+.|.. +++++|+|.+||++++|+++|++.+ |+++||+|||||++.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l-~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLL-PPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhC-ccCCCeeeEeccCCC
Confidence 999999999999999999999995 666777776 8999999999999999999999999 999999999999999
Q ss_pred CCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHH
Q 005924 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (669)
Q Consensus 482 ~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs 560 (669)
.+++++||||.+|+|..+ ++.+.|+||+||+++.+.| +.++|+++++ +|++|.++.+||||||+|||||||||
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g-----~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRa 457 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG-----DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRA 457 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC-----CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHHH
Confidence 999999999999999987 5589999999999987732 8999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccC
Q 005924 561 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSK 640 (669)
Q Consensus 561 flq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~ 640 (669)
|+|+|.... ..|++|||||||+.++||+|++||++|.+.|.++++.+||||++.+|.||||+|++++++||+++++
T Consensus 458 fvq~r~~~~----~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ 533 (587)
T COG0369 458 FVQERAANG----AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEE 533 (587)
T ss_pred HHHHHHhcc----ccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHC
Confidence 999999733 4569999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 641 EGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
+|+|||||+++.|+++|+++|.+|+++
T Consensus 534 ga~~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 534 GAHIYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHh
Confidence 999999998899999999999999985
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=7.6e-74 Score=630.06 Aligned_cols=370 Identities=52% Similarity=0.916 Sum_probs=336.1
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CCcEEEEecCCCCC
Q 005924 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 369 (669)
Q Consensus 291 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~ 369 (669)
..+||.|+|+++++|+.+ ++|+++||+||+++++++|+|||||+|||+|+++.|+++|++||++ ++.++.+......
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 467999999999999998 8899999999999889999999999999999999999999999999 8999988765531
Q ss_pred CCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHH
Q 005924 370 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 449 (669)
Q Consensus 370 ~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~ 449 (669)
.+...|+|.|+|++++|++|+||+++|+|.+|+.||.||+|+++|++|.+|+| +|+++|.+|+.++++|++|||.
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 13456899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCC--C----
Q 005924 450 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLE--G---- 520 (669)
Q Consensus 450 ~fps~~---~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~--~---- 520 (669)
+||+++ +|++.|++++ |+++||+|||||+|..+++.++|||+++.+.++.++.+.|+||+||+++.++. +
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999888899999999999999988999999999999977310 0
Q ss_pred ---------CCCccEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCccc
Q 005924 521 ---------NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDF 591 (669)
Q Consensus 521 ---------~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ 591 (669)
...++.|++.++.|.|.+|.++.+|+||||+||||||||||++++....+.+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00128999999999999998878999999999999999999999876543343468999999999995599
Q ss_pred ccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 592 IYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 592 ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+|++||++|.+.+.+++++++|||++..++|||++|.++.+.+++++.++++||||||...|+++|.++|.+|++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~ 390 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQ 390 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHh
Confidence 99999999999888889999999998788999999999888999888778999999994449999999999999864
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=4.4e-72 Score=613.12 Aligned_cols=356 Identities=38% Similarity=0.688 Sum_probs=321.6
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCCCCC
Q 005924 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 376 (669)
Q Consensus 299 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 376 (669)
|+++++||+++++++|+||+||+++++++|+|||||+|||+|+++.|++++++||++ ++..+.++....... .....
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK-KNAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc-ccccc
Confidence 678999999999999999999998889999999999999999999999999999999 788888875322111 01246
Q ss_pred CCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 005924 377 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 456 (669)
Q Consensus 377 ~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~ 456 (669)
+.+||.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|.+|++.+|+++|.+|+.+.++|++|||.+||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcC-----CCCCCCCccEEEEEE
Q 005924 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 531 (669)
Q Consensus 457 p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~-----~g~~~~~~~~v~v~~ 531 (669)
|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999877899999999987543 599999999988 77 8999999
Q ss_pred e-CCCcccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhh--cCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCcc
Q 005924 532 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQ--DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 607 (669)
Q Consensus 532 ~-~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~--~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~ 607 (669)
+ .|.|.+|.+ +.+|+||||+||||||||||+|++....+ .+...++++||||||+++.|++|++||++|.+.+.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 458999977 67999999999999999999999986432 1235689999999999955999999999999999999
Q ss_pred EEEEEEecCCC---CcccccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 608 ELILAFSREGS---QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 608 ~l~~afSR~~~---~k~yVq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
++++||||++. .++||||++.++.+++++++ +++++||||||++.|+++|+++|.+|++++
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~ 372 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKE 372 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHc
Confidence 99999999887 48999999999999999977 468999999997789999999999999864
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=6.5e-72 Score=609.55 Aligned_cols=354 Identities=41% Similarity=0.753 Sum_probs=326.7
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCC
Q 005924 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 378 (669)
Q Consensus 299 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (669)
|++|++|+.++++|+|+||+|++++++++|+|||||+|||+|+++.|+++|++||++++.++.++..+. .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 668999999999999999999998889999999999999999999999999999999999998876441 13456
Q ss_pred CCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCCh
Q 005924 379 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 458 (669)
Q Consensus 379 ~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~ 458 (669)
|||.|+|++++|++|+||+++|++++|+.||.||+|+++|++|.+|++.++++.|.++ ++++++|+|.+||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCccc
Q 005924 459 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 538 (669)
Q Consensus 459 ~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~l 538 (669)
+.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++| +.|.|.+|.|.|++
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999987789999999999998888888999999999999999 89999999999999
Q ss_pred CCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC
Q 005924 539 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 618 (669)
Q Consensus 539 p~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~ 618 (669)
|.++.+|+||||+||||||||||+|++..+.+.+...++++||||||+++.|++|++||++|.+.+.++++++||||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 98878999999999999999999999986544444678999999999995599999999999999999999999999988
Q ss_pred CcccccchhHHhHHHHHhcccCC-CEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 619 QKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 619 ~k~yVq~~l~~~~~~i~~ll~~~-~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
.++|||+++.++.+.+++++.++ ++||||||+..|+++|+++|.++++++
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~ 356 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH 356 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh
Confidence 89999999999988999888765 499999994349999999999998764
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=1.7e-71 Score=609.59 Aligned_cols=360 Identities=41% Similarity=0.727 Sum_probs=320.5
Q ss_pred EEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCC--
Q 005924 299 VAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG-- 373 (669)
Q Consensus 299 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 373 (669)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|||+|+++.|++++++||+. .+..+.++...+.....+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999997 68999999999999999999999999999985 467888875444221111
Q ss_pred -CCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCC
Q 005924 374 -SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 452 (669)
Q Consensus 374 -~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp 452 (669)
....+++|.|+|++++|++|+||+++|++.+|+.||.||+|+.+|++|+.|++ |+++|.+|+.++++|++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 12335677799999999999999999999999999999999999999999975 889999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCC--CCccCCcccHhhhhcCCCCCCCCccEEEEE
Q 005924 453 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 453 s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~--g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 530 (669)
++++|++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++++| +.|.|.
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEEE
Confidence 9999999999999 9999999999999987789999999999887654 446789999999999999 899999
Q ss_pred EeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhh----cCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC
Q 005924 531 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 605 (669)
Q Consensus 531 ~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~----~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~ 605 (669)
++.+ .|++|.++.+|+||||+||||||||||+|+|....+ .+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 8764 899998888999999999999999999999875421 22356899999999999559999999999999999
Q ss_pred ccEEEEEEecCCC-CcccccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 606 ISELILAFSREGS-QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 606 ~~~l~~afSR~~~-~k~yVq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
++++++||||++. .++||||+|.++.+.+|+++ .++++|||||| +.|+++|+++|.+|++++
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~ 376 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEH 376 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHh
Confidence 9999999999865 58999999999999999987 67899999999 589999999999999874
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=9.3e-69 Score=585.14 Aligned_cols=350 Identities=35% Similarity=0.610 Sum_probs=315.7
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 005924 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (669)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (669)
+|+.|++|++++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||++++..|.++.... ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47889999999999999999999976 8999999999999999999999999999999999998876332 345
Q ss_pred CCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 005924 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 457 (669)
Q Consensus 378 ~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p 457 (669)
.|+|.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|..++ +++|.+++..+++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 688999999999999999999999999999999999999999999883 5689999999999999999999999999
Q ss_pred hHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCC-CccCCcccHhhhhcCCCCCCCCccEEEEE--EeCC
Q 005924 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 534 (669)
Q Consensus 458 ~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~v~--~~~g 534 (669)
+++|++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||+++++| +.|.+. .+.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999777889999999998877655 56789999999999999 788875 4567
Q ss_pred CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
.|.+|.+..+|+||||+||||||||||++++......+...++++||||||+++.|++|++||++|.+.+. ++++++||
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV-VSVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCC-eEEEEEec
Confidence 99999877899999999999999999999998654444456899999999999559999999999998654 58999999
Q ss_pred cCCCC-cccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 615 REGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 615 R~~~~-k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
|++.. ++|||++|.++.+.+++++.++++|||||| +.|+++|.++|.+|+.++
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~ 354 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEK 354 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHh
Confidence 98764 899999999988889888888999999999 569999999999998764
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=8.3e-66 Score=556.85 Aligned_cols=330 Identities=40% Similarity=0.643 Sum_probs=297.1
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 005924 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (669)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (669)
+|+.|++|++++++|+|+||+||+++++++|+|||||+|+|+|+++.|++++++||++++..+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999998899999999999999999999999999999998876531
Q ss_pred CCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCC--CCC
Q 005924 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 455 (669)
Q Consensus 378 ~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp--s~~ 455 (669)
++|.|+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|+++|.+ .++++|+|.+|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 356799999999999999997 55568899999999888875 68888764 589999999999 999
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhc-CCCCCCCCccEEEEEEeCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~v~~~~g 534 (669)
+|+|||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|+||+||+++ ++| +.|.+++++|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998778999999999987764 466789999999986 578 8999998776
Q ss_pred -CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 535 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 535 -~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
.|++|.++.+|+||||+||||||||||+|++... + ..++++||||||++..|++|++||+++.+.+.++++++||
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999988789999999999999999999998762 2 4589999999999855999999999999999989999999
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
||++..++||||++.++.+++++++.++++||||||++.|+++|+++|.+|++++
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~ 334 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATE 334 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHh
Confidence 9998888999999999999999988788999999995489999999999999864
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=2.9e-65 Score=569.78 Aligned_cols=343 Identities=38% Similarity=0.644 Sum_probs=305.6
Q ss_pred CCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecC
Q 005924 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (669)
Q Consensus 286 ~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~ 365 (669)
...++..+||.++|+.|++|++++++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||++++..+
T Consensus 160 ~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----- 234 (530)
T PRK06214 160 PLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----- 234 (530)
T ss_pred CCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----
Confidence 345788999999999999999999999999999999988999999999999999999999999999999976432
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHH
Q 005924 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (669)
Q Consensus 366 ~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~ 445 (669)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+... ...+++
T Consensus 235 ----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vl 291 (530)
T PRK06214 235 ----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVL 291 (530)
T ss_pred ----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHH
Confidence 2789999999999999976 889999999998876 88888886544443221 246899
Q ss_pred HHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCc
Q 005924 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDC 524 (669)
Q Consensus 446 dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~ 524 (669)
|+|.+||++++|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.. .++.+.|+||+||+ ++++|
T Consensus 292 dvL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G------ 363 (530)
T PRK06214 292 AALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG------ 363 (530)
T ss_pred HHHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC------
Confidence 99999999999999999999 99999999999999877899999999998764 56778999999998 48998
Q ss_pred cEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc
Q 005924 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (669)
Q Consensus 525 ~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~ 603 (669)
+.|.|+++.+ +|++|.++.+|+||||+||||||||||+|+|.... ..++++||||||+...|++|++||++|.+.
T Consensus 364 d~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----~~g~~~LffG~R~~~~D~ly~dEL~~l~~~ 439 (530)
T PRK06214 364 TRVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----APGRNWLFFGHQRSATDFFYEDELNGLKAA 439 (530)
T ss_pred CEEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----CCCCeEEEEEecCChhhhHHHHHHHHHHHh
Confidence 8999988554 59999888899999999999999999999987632 357899999998877799999999999999
Q ss_pred CCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+.+++++++|||++.+++||||+|.++..++|+++.++++||||||++.|+++|+++|.+|++++
T Consensus 440 g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~ 504 (530)
T PRK06214 440 GVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQF 504 (530)
T ss_pred CCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999998889999999999999999998889999999997779999999999999864
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.9e-49 Score=399.60 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=190.3
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 005924 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (669)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (669)
||+.++||.|+|+++++|++++++|+|+|||||+++++++|+|||||+|||+|+++.|++++++||+++|+.|.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHH
Q 005924 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (669)
Q Consensus 368 ~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 447 (669)
. .....|||.|+|++++|++|+||+++|+|.||+.||.||+|+++|++|++|++.+|+++|.+|+.+.+++++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 24577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHh
Q 005924 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 511 (669)
Q Consensus 448 l~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~ 511 (669)
|.+||++++|+++|++++ |+++||+|||||||..+++.++|||+++++.++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999899999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=3e-37 Score=331.67 Aligned_cols=249 Identities=30% Similarity=0.509 Sum_probs=209.3
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
|..++|+.++|+.|.+|+..+....++||+|+.++ .+.|++|.+++|.|+...
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~-------------------------- 137 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID-------------------------- 137 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC--------------------------
Confidence 77899999999999999998777899999999765 799999999999664210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
.+|
T Consensus 138 ----------------------------------------------------------~~g------------------- 140 (367)
T PLN03115 138 ----------------------------------------------------------KNG------------------- 140 (367)
T ss_pred ----------------------------------------------------------CCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCcc
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 525 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~ 525 (669)
.+..+|+|||||+|.. .++.++|+|+.+.|.++.|+...|+||+||+++++| +
T Consensus 141 ------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------d 196 (367)
T PLN03115 141 ------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------A 196 (367)
T ss_pred ------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------C
Confidence 1235799999999843 256899999988887777777899999999999999 8
Q ss_pred EEEEEEeCCCc-ccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhHhc
Q 005924 526 WAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (669)
Q Consensus 526 ~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~ 603 (669)
.|.|.+|.|.| .+|.++.+|+||||+||||||||||++++....... ...++++||||||+.+ |++|++||++|.+.
T Consensus 197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~ 275 (367)
T PLN03115 197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEK 275 (367)
T ss_pred EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHh
Confidence 99999999965 456667789999999999999999999876432111 1247899999999998 99999999999887
Q ss_pred C-CccEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 604 G-VISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 604 g-~~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
. .+++++.+|||++. .++|||++|.++.++++++++ ++++|||||+ ++|+++|.++|.+++..
T Consensus 276 ~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~ 344 (367)
T PLN03115 276 APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAK 344 (367)
T ss_pred CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHH
Confidence 4 47899999999875 478999999999999998885 5689999999 89999999999999875
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3e-33 Score=290.99 Aligned_cols=192 Identities=49% Similarity=0.897 Sum_probs=166.9
Q ss_pred CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEE
Q 005924 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 548 (669)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piIm 548 (669)
.+|+|||+|+|....+.++|+|+.+.+..+.+..+.|.+|+||+++++| +.|.+.+|.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 4699999999975568999999988776655666789999999999999 8999999999 99998877789999
Q ss_pred EecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCC-cccccchh
Q 005924 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKM 627 (669)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l 627 (669)
||+|||||||++++++++....++...++++||||+|+.+.|++|+++|++|.+.+.++++++++||+... ++||++.+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l 200 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKL 200 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHH
Confidence 99999999999999998764322334679999999999933999999999999988889999999998764 78999999
Q ss_pred HHhHHHHHhcccCCCEEEEeCCchh-hHHHHHHHHHHHHHhh
Q 005924 628 MDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTIVQEQ 668 (669)
Q Consensus 628 ~~~~~~i~~ll~~~~~iYvCG~a~~-M~~~V~~~L~~i~~~~ 668 (669)
.+..+.+++++.+++.||+||| +. |++.|.++|.++++++
T Consensus 201 ~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~ 241 (267)
T cd06182 201 KEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKA 241 (267)
T ss_pred HHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHc
Confidence 8888777777777779999999 77 9999999999998764
No 16
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=1.9e-33 Score=266.10 Aligned_cols=144 Identities=25% Similarity=0.320 Sum_probs=130.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|++|+|+|||||||||.+|++|++.+.++ |+.++++++.+ .++ +.+++++||++||||+|++|+|+..|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~--g~~~~~~~~~~--~~~------l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEA--GFSTETLHGPL--LDD------LSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHc--CCceEEeccCC--HHH------hccCCeEEEEECCCCCCCCChhHHHHH
Confidence 56899999999999999999999999987 88888887644 344 788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L 239 (669)
++|++...+ |++++|+||||||++|++||.+++.++++|+++||+++.+++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999875433 999999999999999999999999999999999999999999999875 47899999999988764
No 17
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=3.9e-33 Score=264.83 Aligned_cols=145 Identities=23% Similarity=0.357 Sum_probs=130.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|+++.|+|||||||||.+|++|++.+.+. |+.++++++++++... +.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~--g~~~~~~~~~~~~~~~------~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQ--GHEVTLFEDPELSDWQ------PYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCceEEechhhCCchh------cccCCeEEEEECCCCCCCCChhHHHHH
Confidence 56899999999999999999999999987 8889999887765433 455789999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L 239 (669)
++|++... .|++++|+|||||||+|++||.+++.++++|+++||+++.+++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 99986532 3999999999999999999999999999999999999999999999876 589999999998 7654
No 18
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=7.6e-33 Score=262.88 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=126.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc--CCeEEEEEecCCCCCCChhHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK--ETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~--~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
+++.|+|||||||||.+|++|++.+.++ ++.+.++. +.+..+ +.+ .+.+||++||||+|++|+|+..|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~--g~~~~~~~--~~~~~~------~~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAA--GFEAWHNP--RASLQD------LQAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHC--CCceeecC--cCCHhH------HHhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 5799999999999999999999999876 66665543 233333 333 37899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (669)
+++|++... ..|++++|||||||||+| ++||.++++++++|+++||+++.+++++|++. ++|++|++|++.+|++
T Consensus 71 ~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~ 148 (151)
T PRK05723 71 YSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAA 148 (151)
T ss_pred HHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHH
Confidence 999986432 149999999999999999 89999999999999999999999999999884 6899999999999988
Q ss_pred HH
Q 005924 239 LD 240 (669)
Q Consensus 239 L~ 240 (669)
|.
T Consensus 149 l~ 150 (151)
T PRK05723 149 LK 150 (151)
T ss_pred hc
Confidence 74
No 19
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=2.8e-31 Score=291.57 Aligned_cols=246 Identities=25% Similarity=0.438 Sum_probs=200.8
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
|...+|+.++|+.+++|+......+++||.|+.++..+.|+||.++.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 678889999999999999876667999999998776789999999998643210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
.++
T Consensus 191 ----------------------------------------------------------~~g------------------- 193 (411)
T TIGR03224 191 ----------------------------------------------------------ASG------------------- 193 (411)
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCCC---CCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCcc
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 525 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~---~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~ 525 (669)
.+..+|+|||+|+|... .+.++|+|+++.. ...|+.+.|.+|+||+++++| +
T Consensus 194 ------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------d 248 (411)
T TIGR03224 194 ------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------D 248 (411)
T ss_pred ------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------C
Confidence 11247999999987321 2479999998863 345667789999999999999 8
Q ss_pred EEEEEEeCCC-cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcC
Q 005924 526 WAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 604 (669)
Q Consensus 526 ~v~v~~~~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g 604 (669)
.|.|.+|.|+ |.+|.++.+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||+++.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 9999999995 7777666689999999999999999999887543223 468999999999998 999999999998654
Q ss_pred CccEEEEEEecCCC-CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 605 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 605 ~~~~l~~afSR~~~-~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
.+++++|||++. .++|||+.+.++...+++++. +++.||+||| ++|+++|.+.|.++..+
T Consensus 327 --~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 327 --IDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCAT 388 (411)
T ss_pred --ceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHH
Confidence 356779999654 589999999988888887775 4589999999 89999999999999864
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=5.1e-31 Score=277.47 Aligned_cols=171 Identities=32% Similarity=0.625 Sum_probs=147.5
Q ss_pred ceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE-eCCCcccCCCCCCCEEEE
Q 005924 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI-RPSNFKLPANPSVPIIMV 549 (669)
Q Consensus 471 pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~-~~g~F~lp~~~~~piImI 549 (669)
+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.+ +.|.|.++. ..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~~-~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPG------DTIKAFIRPNPSFRPAK-GAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCc------CEEEEEeccCCCccCCC-CCCCEEEE
Confidence 59999999984 47899999843 259999999999999 8999886 556899874 46899999
Q ss_pred ecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHH
Q 005924 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 629 (669)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~ 629 (669)
|+|||||||+|+++++. ..++++||||+|+.+.|.+|++||++|.+.+.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 99999999999998752 24689999999998558999999999999888888999999975 47899999988
Q ss_pred hHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 630 KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 630 ~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
..+.+.+++.+++.||+||| ++|+++|.+.|.+|+.++
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~ 271 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQ 271 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHc
Confidence 77777777777899999999 899999999999999764
No 21
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=5.8e-31 Score=279.35 Aligned_cols=251 Identities=27% Similarity=0.435 Sum_probs=198.0
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
+....|+.++|+..+.+++|.+..++++|+|+.+. .+.|++|.++.|.++... . .
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~--~---------------------~- 73 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTN--P---------------------K- 73 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCC--h---------------------h-
Confidence 34577889999999999977766789999999764 799999999988543210 0 0
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
..|
T Consensus 74 ----------------------------------------------------------~~g------------------- 76 (307)
T PLN03116 74 ----------------------------------------------------------KPG------------------- 76 (307)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCCC---CCeEEEEEEEEEecCCCCC----ccCCcccHhhhhcCCCCCC
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGR----IHKGVCSTWMKNAIPLEGN 521 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~---~~~i~i~v~vv~~~~~~g~----~~~G~~S~~L~~l~~g~~~ 521 (669)
.+..+|+|||||+|... ...++|+|+++.+..|... ...|.+|+||+++++|
T Consensus 77 ------------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 135 (307)
T PLN03116 77 ------------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG--- 135 (307)
T ss_pred ------------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC---
Confidence 11247999999999532 2379999998765554211 1579999999999999
Q ss_pred CCccEEEEEEeCCCccc-CC-CCCCCEEEEecCcccchHHHHHHHHHHHhhc-CCCCCCEEEEEeecCCCcccccHHHHH
Q 005924 522 GDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELN 598 (669)
Q Consensus 522 ~~~~~v~v~~~~g~F~l-p~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~-g~~~~~~~Lf~G~R~~~~d~ly~del~ 598 (669)
+.|.|.+|.|.|.+ |. +..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|++||+
T Consensus 136 ---d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~ 211 (307)
T PLN03116 136 ---DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFE 211 (307)
T ss_pred ---CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHH
Confidence 89999999998876 43 4568999999999999999999988653211 11247899999999988 999999999
Q ss_pred hhHhcCC-ccEEEEEEecCCCC----cccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 599 NFEEEGV-ISELILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 599 ~~~~~g~-~~~l~~afSR~~~~----k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
+|.+... +++++.++||++.. ++||++.|.+..+.++..+..++.+|+||| +.|++++.++|.+++++
T Consensus 212 ~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~ 284 (307)
T PLN03116 212 RYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEE 284 (307)
T ss_pred HHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHH
Confidence 9998765 68899999997653 679999998877676666656789999999 89999999999998765
No 22
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.97 E-value=6.7e-30 Score=268.69 Aligned_cols=190 Identities=33% Similarity=0.529 Sum_probs=156.6
Q ss_pred CCceeccccCCCCC---CCCeEEEEEEEEEecCCCC-CccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCccc-CCCCC
Q 005924 469 LQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL-PANPS 543 (669)
Q Consensus 469 l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~l-p~~~~ 543 (669)
..+|+|||||+|.. +++.++|+|+++.+.++.+ ..+.|.+|+||+++++| +.|.|.+|.|+|.+ |.+..
T Consensus 62 ~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~~~~~~~~~~ 135 (286)
T cd06208 62 HKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------DDVQITGPVGKTMLLPEDPN 135 (286)
T ss_pred CCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------CEEEEEeecCCcccCCCCCC
Confidence 35799999999854 2468999999887655543 34569999999999999 89999999998765 44556
Q ss_pred CCEEEEecCcccchHHHHHHHHHHHhhc-CCCCCCEEEEEeecCCCcccccHHHHHhhHhcC-CccEEEEEEecCCC---
Q 005924 544 VPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISELILAFSREGS--- 618 (669)
Q Consensus 544 ~piImIa~GTGIAPfrsflq~r~~~~~~-g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g-~~~~l~~afSR~~~--- 618 (669)
+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|+++|+++.+.. .++++++++||++.
T Consensus 136 ~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~ 214 (286)
T cd06208 136 ATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNAD 214 (286)
T ss_pred CCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCC
Confidence 7999999999999999999998763211 12357899999999998 999999999999864 46789999999764
Q ss_pred -CcccccchhHHhHHHHHhcccC-CCEEEEeCCchhhHHHHHHHHHHHHH
Q 005924 619 -QKEYVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQ 666 (669)
Q Consensus 619 -~k~yVq~~l~~~~~~i~~ll~~-~~~iYvCG~a~~M~~~V~~~L~~i~~ 666 (669)
.++||++.+.+....+++.+.. +..||+||| ++|+++|.+.|.+++.
T Consensus 215 g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~ 263 (286)
T cd06208 215 GGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE 263 (286)
T ss_pred CCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh
Confidence 4689999999877777776654 469999999 8899999999999874
No 23
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.97 E-value=1e-30 Score=268.91 Aligned_cols=195 Identities=32% Similarity=0.508 Sum_probs=164.5
Q ss_pred CCChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
...+|||+.+..+. ..+|+|||||+|. .+.++|+|+.+... .+ +.|.+|+||++ +++| +.|.|.+|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~~--~~G~~S~~L~~~~~~G------d~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--DG--GLGLGSGWLTRHAPIG------ASVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--CC--CCeeechhhhhCCCCC------CEEEEEec
Confidence 34689999987342 6789999999985 47899999876421 12 35999999998 4788 89999998
Q ss_pred CC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 533 PS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 533 ~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
.| .|.+|. ..+|+||||+|||||||+||++++.. . ..++++||||||+.+.|++|.+||++|.+.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~---~--~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARAR---A--GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHh---c--cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 65 898875 56899999999999999999999875 2 23689999999998549999999999999999999999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCch-hhHHHHHHHHHHHHHhh
Q 005924 612 AFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK-GMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~-~M~~~V~~~L~~i~~~~ 668 (669)
++||++..++||++.+.++.+.+++++..+++||+||| + +|+++|.+.|.+++++.
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~~ 229 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGEE 229 (245)
T ss_pred EEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHHH
Confidence 99998777899999999887777776666789999999 6 99999999999998763
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=8.1e-27 Score=219.88 Aligned_cols=138 Identities=39% Similarity=0.620 Sum_probs=121.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHH-HHHHHHh
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA-RFYKWFT 166 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~-~F~~~L~ 166 (669)
|+|+|+|||||++|+.|+++|.++ |+.++++++++++.. ..++..++.++|++||||+|++|+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~--g~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRER--GVEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHT--TSEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHc--CCceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 899999999999999999999988 899999999999853 122889999999999999999999988 5566664
Q ss_pred cCC--CCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHH
Q 005924 167 EGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAW 231 (669)
Q Consensus 167 ~~~--~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W 231 (669)
... .....+++++|+|||+||+.|..||.++|.++++|+++|++++.+++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 321 01133899999999999999988999999999999999999999999999987 789999999
No 25
>PRK07308 flavodoxin; Validated
Probab=99.93 E-value=1.8e-25 Score=211.93 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=121.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|+++.|+|+|+|||||++|++|++.+.+. |+.++++++++.+..+ +.+++.|||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~--g~~~~~~~~~~~~~~~------l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLREL--GHDVDVDECTTVDASD------FEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhC--CCceEEEecccCCHhH------hccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 45799999999999999999999999877 7889999998887666 788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l 235 (669)
++|.... +++++++|||+||+.|+|||.+++.++++|+++|++++.+..+.|... ...+....|.+.|
T Consensus 73 ~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9997754 889999999999999999999999999999999999999888887653 1233344455444
No 26
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.93 E-value=2e-25 Score=226.35 Aligned_cols=183 Identities=19% Similarity=0.303 Sum_probs=150.8
Q ss_pred CCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 454 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 454 ~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
.+..+|||+.+..|....|+|||+|.|.. .+.++|+|+.+. .|.+|++|.+ +++| +.|.|.+|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecC
Confidence 34578999998767777999999999864 578999998542 5899999986 9999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.++.+++||||+|||||||++++++.... + ...+++|+||+|+.. |++|++||+++.+...+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ---G-SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc---C-CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 999998766678999999999999999999988752 2 357899999999998 99999999999988788889989
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+++ .++|+++.+.+... -..+..+|+||| +.|++++.+.|.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp-~~m~~~~~~~l~~ 211 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGS-PEMVYAARDDFVE 211 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhcc-----CccccEEEEECC-HHHHHHHHHHHHH
Confidence 998644 45677766543321 114678999999 8899999999975
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=3.1e-25 Score=223.68 Aligned_cols=188 Identities=29% Similarity=0.436 Sum_probs=151.0
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+. .|.+|+||+++++| +.+.|.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEEC
Confidence 34689999987554 57999999999864 478999998653 59999999999998 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
|.|+|.++.+..+|+||||+|||||||+++++++... + ..++++||||+|+.+ |++|++||+++.+.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 9999876656678999999999999999999998752 1 457899999999998 9999999999999888889999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhc-ccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 612 AFSREGSQKEYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~i~~l-l~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+++|+.....+.++.+..+....... ...+..+|+||| +.|++.+.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99997765444443332111111111 235689999999 89999999998763
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=3.1e-25 Score=232.99 Aligned_cols=179 Identities=17% Similarity=0.318 Sum_probs=140.9
Q ss_pred ceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEEEe
Q 005924 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVG 550 (669)
Q Consensus 471 pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa 550 (669)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| +.|.|.+|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECccccccccC-CCCcEEEEE
Confidence 499999999864 57899999865321110123469999999999999 8999999999998863 468999999
Q ss_pred cCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC------Cccccc
Q 005924 551 PGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQ 624 (669)
Q Consensus 551 ~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~------~k~yVq 624 (669)
+|||||||++++++++.. +....+++||||+|+.+ |.+|++||+++.+...++++++++||+.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987652 21247899999999988 99999999999988778889999998541 357888
Q ss_pred chhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 625 HKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 625 ~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 7765542 11111 23568999999 89999999998764
No 29
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.92 E-value=4.7e-25 Score=227.28 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=144.2
Q ss_pred CCChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 455 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 455 ~~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
...+|||+.+.++ . ...|+|||+|+|. .+.++|+|+.+. .|.+|+||+++++| +.|.|.+
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEec
Confidence 3468999877543 2 2469999999985 357888888652 59999999999999 8999999
Q ss_pred eC-CCcccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcC-CccE
Q 005924 532 RP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 608 (669)
Q Consensus 532 ~~-g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g-~~~~ 608 (669)
|. |.|.++.. ..+|+||||+|||||||+|+++++.. .+ ..++++||||+|+.+ |++|++||+++.+.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKD---LE-RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHh---hC-CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 87 46777654 34799999999999999999998754 12 457899999999998 999999999998874 4678
Q ss_pred EEEEEecCCC---CcccccchhHHh-HHHHHh-cc-cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 609 LILAFSREGS---QKEYVQHKMMDK-AAQLWS-LL-SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 609 l~~afSR~~~---~k~yVq~~l~~~-~~~i~~-ll-~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+++++||++. .+++|++.+.+. ...... .+ .++..+|+||| ++|++++.+.|.+.
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 9999998654 246777765432 111111 12 24679999999 89999999998763
No 30
>PRK08051 fre FMN reductase; Validated
Probab=99.92 E-value=7.3e-25 Score=223.61 Aligned_cols=182 Identities=19% Similarity=0.243 Sum_probs=145.2
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHh-hhhcCCCCCCCCccEEEEEEeC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~-L~~l~~g~~~~~~~~v~v~~~~ 533 (669)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|..|.+ +.++++| +.|.|.+|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcCC
Confidence 3578999888757667899999999854 578999988542 2444445 4568999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|.++.+..+|+||||+||||||+++++++... .+ ...+++|+||+|+.+ |.+|.+||+++++...+++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALA---QG-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHH---hC-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 9998876666899999999999999999999875 22 457899999999998 999999999999987788899999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHH-HH
Q 005924 614 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL-HT 663 (669)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L-~~ 663 (669)
||+++ .++||++.+.++.. . ..+..+|+||| ++|+++|.+.| .+
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~ 216 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRE 216 (232)
T ss_pred CCCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHH
Confidence 88654 35677766543211 1 13468999999 89999999998 55
No 31
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=6.8e-25 Score=236.27 Aligned_cols=181 Identities=19% Similarity=0.296 Sum_probs=148.8
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g 534 (669)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +++| +.|.+.+|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G------~~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKER------DILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCC------CEEEEEcCce
Confidence 467999998767667899999999865 47899999854 25999999974 8999 8999999999
Q ss_pred CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
.|.++.+..+|+||||+|||||||++++++... .+ ..++++||||+|+.+ |++++++|++|.+....++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~---~~-~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRA---KG-IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999986667899999999999999999999875 22 456899999999998 9988999999988777788999999
Q ss_pred cCCC------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 615 REGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 615 R~~~------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
|+.+ .++||++.+.+.... + .+..+|+||| +.|++.+.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~~----~-~~~~vy~CGp-~~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFPD----L-SGHQVYACGS-PVMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhccc----c-cCCEEEEECC-HHHHHHHHHHHHH
Confidence 8522 356777666443211 1 3578999999 8999999998875
No 32
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.92 E-value=8.7e-25 Score=223.73 Aligned_cols=183 Identities=24% Similarity=0.351 Sum_probs=147.7
Q ss_pred CCChHHHHHHhcCCC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~ 532 (669)
...+|||+.+..|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECC
Confidence 357899988875654 5899999999864 478999998542 599999997 59998 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|+|.++.+..+|+||||+|||||||++++++... .+ ...+++||||+|+.. |.+|.++|+++.+....++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLE---RG-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 99998876656899999999999999999999775 22 346899999999998 99999999999987777888999
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+.. .++|+++.+.+.... ..++..+|+||| +.|++++.+.|.+
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~ 225 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQ 225 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHH
Confidence 998643 245666654432110 113578999999 8999999999876
No 33
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.92 E-value=1.2e-24 Score=239.82 Aligned_cols=180 Identities=17% Similarity=0.302 Sum_probs=144.7
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEE
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piIm 548 (669)
...|+|||+|.|.. .+.++|+|+++......++...|.+|+||+++++| +.|.|.+|.|+|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEEE
Confidence 35799999999865 56899999976554434455679999999999999 899999999999876 35689999
Q ss_pred EecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC------Cccc
Q 005924 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEY 622 (669)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~------~k~y 622 (669)
||+|||||||+|++++.+... ....+++||||+|+.+ |.+|.++|+++.+...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~---~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 999999999999999876521 1346899999999998 99999999999988788889999997542 3467
Q ss_pred ccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 623 VQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 623 Vq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
|++.+.+.. +.+.. ..+..+|+||| ++|++++.+.|.+
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~ 394 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKD 394 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHH
Confidence 877765432 11111 23578999999 8999999999865
No 34
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=2.9e-24 Score=218.81 Aligned_cols=186 Identities=20% Similarity=0.171 Sum_probs=148.9
Q ss_pred CCChHHHHHHhcCCC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +++| +.|.|.+|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g------~~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPG------DELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCC------CEEEEECC
Confidence 357899999876766 7899999999865 57899999854 25899999987 6888 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.+..+++||||+|||||||++++++..... .....+++|+||+|+.+ |++|++||+++.+.+..++++.+
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 9988876555689999999999999999999987521 12457899999999988 99999999999998888889999
Q ss_pred EecCCCC--------cccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 613 FSREGSQ--------KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 613 fSR~~~~--------k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+|+++.. ++|+++.+.+.. .....+..+|+||| +.|++++.+.|.+.
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEATL----GDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhhc----cCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 9876532 345655443321 11124679999999 88999999999764
No 35
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.91 E-value=3.4e-24 Score=218.88 Aligned_cols=183 Identities=24% Similarity=0.324 Sum_probs=147.2
Q ss_pred CCChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
...+|||+.+..|. ..+|+|||+|+|.. .+.++|+|+... .|.+|+||++ +++| +.|.|.+|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecC
Confidence 34689999886454 35899999999864 478999988542 5999999998 9999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.+..+++||||+|||||||+++++++.. .+ ...+++||||+|+.+ |.+|.++|+++.+...+++++.+
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAE---WG-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 99999876556799999999999999999999765 22 347899999999988 99999999999988778889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+.. ..+++++.+.+.. .. ......+|+||| +.|++++.+.|.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~l---~~-~~~~~~vyicGp-~~m~~~~~~~l~~ 222 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALREDL---AS-SDAKPDIYLCGP-PGMVDAAFAAARE 222 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHhh---cc-cCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998643 3456665443321 11 123568999999 8999999999876
No 36
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.91 E-value=2.9e-24 Score=217.44 Aligned_cols=181 Identities=20% Similarity=0.297 Sum_probs=148.3
Q ss_pred CChHHHHHHhcCCC--CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p~l--~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
..+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +++| +.|.|.+|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVG------DRVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccC------CEEEEeCC
Confidence 46799988875654 3799999999865 47899999853 25999999998 9999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.+..+++||||+|||||||++++++... .+ ...+++|+|++|+.+ |++|.++|+++.+...++++..+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 99999876556899999999999999999999875 22 457899999999998 99999999999988777888888
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++++. .++|+++.+.+... -.+++.+|+||| +.|++.+.+.|.+
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp-~~~~~~v~~~l~~ 211 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGP-PAMVDATVDALLA 211 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECC-HHHHHHHHHHHHH
Confidence 887643 45677776654321 114679999999 8999999999876
No 37
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.91 E-value=3.4e-24 Score=217.78 Aligned_cols=180 Identities=26% Similarity=0.366 Sum_probs=147.7
Q ss_pred CCChHHHHHHhcCCC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
...+||++.+..|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +++| +.|.|.+|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G------~~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPG------DRLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCC------CEEEEECC
Confidence 346899988865654 4799999998854 7899998854 25999999999 9998 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.. .+|++|||+||||||+++++++... .+ ..++++|+||+|+.+ |.+|.++|+++.+...+++++..
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAE---DG-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHh---cC-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 999887644 4899999999999999999999875 22 457899999999988 99999999999988778889999
Q ss_pred EecCCC---CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~---~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+.. .++||++.+.+.. +-..+..+|+||| +.|++++++.|.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998654 4567887665431 1123578999999 8999999999975
No 38
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=3e-24 Score=236.27 Aligned_cols=184 Identities=16% Similarity=0.244 Sum_probs=145.1
Q ss_pred CChHHHHHHhcC--C---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEE
Q 005924 456 PPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (669)
Q Consensus 456 ~p~~~li~~~~p--~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (669)
..+|||+.+.++ . ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +++| +.|.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~G------d~v~v 247 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVG------DVLEL 247 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCC------CEEEE
Confidence 467888888643 1 1359999999985 46888888743 25999999987 9999 89999
Q ss_pred EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEE
Q 005924 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (669)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l 609 (669)
.+|.|.|.++.+..+|+||||+|||||||+|++++.... + ...+++||||+|+.+ |++|++||+++.+...++++
T Consensus 248 ~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~ 322 (399)
T PRK13289 248 AAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKA 322 (399)
T ss_pred EcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEE
Confidence 999999999876678999999999999999999998652 2 457999999999998 99999999999988777889
Q ss_pred EEEEecCCCC----ccccc-chhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 610 ILAFSREGSQ----KEYVQ-HKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 610 ~~afSR~~~~----k~yVq-~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+.++||+... ..|++ .++.+ +.+.+.+. .+..+||||| +.|++++.+.|.+.
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9999986431 11222 22321 22333342 4689999999 89999999998763
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.91 E-value=4.3e-24 Score=235.20 Aligned_cols=180 Identities=18% Similarity=0.313 Sum_probs=142.3
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEE
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piIm 548 (669)
...|+|||+|+|.. .+.++|+|+++.+.....+...|.+|+||+++++| +.|.+.+|.|+|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeecC-CCCCEEE
Confidence 35699999999965 57899999876332211234569999999999999 8999999999998863 4689999
Q ss_pred EecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC------Cccc
Q 005924 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEY 622 (669)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~------~k~y 622 (669)
||+|||||||++++++.+.. .....+++||||+|+.+ |.+|++||+++.+...++++++++||+.+ .+++
T Consensus 276 IAgGtGIaP~lsmi~~~l~~---~~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKR---LKSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhc---CCCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 99999999999999987652 12356899999999988 99999999999988888889999997533 3467
Q ss_pred ccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 623 VQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 623 Vq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
|++.+.+.. +.+.. ..++.+|+||| +.|++++.+.|.+
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~ 390 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLED 390 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 877664321 21111 24578999999 8999999999865
No 40
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.91 E-value=4.3e-24 Score=229.98 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=148.3
Q ss_pred CChHHHHHHhcCCCC-ceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeC
Q 005924 456 PPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~l~-pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (669)
+.+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.|.+|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcCc
Confidence 468999988656543 799999999864 578999998642 5899999975 9999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|.|.++. ..+|+||||+|||||||+++++++.. .+ ..++++||||+|+.+ |++|.++|++|.+...+++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9999864 35899999999999999999998875 22 346899999999998 999999999999887888999999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 614 SREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
|++++ .++||++.+.+.. +. ....+|+||| +.|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87643 4578887665421 22 3468999999 89999999999753
No 41
>PRK06703 flavodoxin; Provisional
Probab=99.91 E-value=1.2e-23 Score=200.54 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=128.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|++++|+|+|+||||+.+|+.|++++... |+.++++++++.+..+ +.+++.|||++||||.|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAF--DHEVVLQEMDGMDAEE------LLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhc--CCceEEEehhhCCHHH------HhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 57899999999999999999999999877 7889999998887666 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC---CcHHHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~f~~W~~~l~~~L 239 (669)
++|.... +++++++|||+||+.|++||.+++.++++|+++|++++.+....+... ...+...+|.+.+...+
T Consensus 73 ~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 9997653 789999999999999999999999999999999999988877765543 34456678888887666
Q ss_pred Hh
Q 005924 240 DQ 241 (669)
Q Consensus 240 ~~ 241 (669)
++
T Consensus 148 ~~ 149 (151)
T PRK06703 148 AQ 149 (151)
T ss_pred Hh
Confidence 54
No 42
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.91 E-value=4.5e-24 Score=217.48 Aligned_cols=183 Identities=22% Similarity=0.356 Sum_probs=147.0
Q ss_pred CCChHHHHHHhcCCC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEe
Q 005924 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (669)
...+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +++| +.|.+.+|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G------~~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVG------DPVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCC------CEEEEEcC
Confidence 346899988865643 5899999999865 47899999854 25899999997 9999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|+|.++.+..+++||||+|||||||++++++... .+ ..++++|+||+|+.+ |++|.++|+++.+....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAA---SG-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHh---cC-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 99999876656899999999999999999999875 22 456899999999998 99999999999987777788889
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+||+.. ..+++++.+.+.... + ++..+|+||| +.|++++.+.|.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECC-HHHHHHHHHHHHHc
Confidence 998643 245665544322111 1 3678999999 89999999998753
No 43
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.91 E-value=4.9e-24 Score=217.10 Aligned_cols=185 Identities=21% Similarity=0.349 Sum_probs=143.0
Q ss_pred CChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+.++ . ..+|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEeC
Confidence 468998877543 2 3479999999985 578999998542 489999998 59999 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
|.|.|.++.+...++||||+||||||+++++++.... . ...+++||||+|+.+ |++|++||+++.+....++++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT---A-PESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc---C-CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 9999998766668999999999999999999987652 1 357899999999988 9999999999998777888999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhccc--CCCEEEEeCCchhhHHHHHHHHHH
Q 005924 612 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~i~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++||+.....+...+.....+....++. .++.+|+||| +.|++++.+.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 9998754322222211111111112232 2479999999 8999999999865
No 44
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=4e-24 Score=225.15 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=142.2
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (669)
..+|||+.+..|....|+|||+|+|.. ++.++|+|+. .|.+|+||+++++| +.|.|.+|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCCC
Confidence 468999988656555799999999864 5789999973 38999999999999 89999999996
Q ss_pred -cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
|.++....+|+||||+|||||||++++++++. .+....+++|+||+|+.+ |++|+|||+++++....++++..+|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~---~~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMD---NRWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHh---cCCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 76654445799999999999999999998875 221347999999999998 9999999999988777888999999
Q ss_pred cCCCCc---------------ccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 615 REGSQK---------------EYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 615 R~~~~k---------------~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
|++... +++++.+.+. ..+ .+..+|+||| +.|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 864321 2222222111 121 3568999999 89999999998653
No 45
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.91 E-value=5.9e-24 Score=217.97 Aligned_cols=186 Identities=20% Similarity=0.267 Sum_probs=148.2
Q ss_pred CChHHHHHHhcCCC----CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE-
Q 005924 456 PPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 530 (669)
Q Consensus 456 ~p~~~li~~~~p~l----~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 530 (669)
..+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+++. .|.+|+||+++++| +.|.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEECc
Confidence 46799888754532 5699999999854 78999887542 59999999999999 899999
Q ss_pred EeCCCcccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc-CCccE
Q 005924 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 608 (669)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~-g~~~~ 608 (669)
+|.|.|.++.. ..+++||||+|||||||++++++.... + ..++++||||+|+.+ |.+|++||+++.+. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E-RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C-CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 99999998765 358999999999999999999988642 1 457899999999998 99999999999887 66778
Q ss_pred EEEEEecCCCC---cccccchhHHh-HHHHHh--cccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 609 LILAFSREGSQ---KEYVQHKMMDK-AAQLWS--LLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 609 l~~afSR~~~~---k~yVq~~l~~~-~~~i~~--ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
++.++||++.. ++|+++.+... ...... ...++..||+||| ++|++++.+.|.+.
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 223 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEK 223 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88899987653 57888766531 111111 1124679999999 89999999998753
No 46
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.91 E-value=7.4e-24 Score=227.57 Aligned_cols=184 Identities=15% Similarity=0.262 Sum_probs=145.0
Q ss_pred CChHHHHHHhcCC--CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAPH--LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p~--l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~ 532 (669)
..+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.+.+|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeCC
Confidence 4579988876453 24699999999864 467999998542 599999997 59999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|.++.+..+|+||||+|||||||++++++.+. .+ ...+++|+||+|+.+ |++|.+||+++.+....+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~---~~-~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLK---NR-PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 99999886667899999999999999999998764 22 357999999999998 99999999999987666677777
Q ss_pred EecCCCCcccccchhHHhHHHHHhccc--CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 613 FSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 613 fSR~~~~k~yVq~~l~~~~~~i~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.+++. .++|.++++.+. .+.+.+. .+..+|+||| ++|++.+.+.|.+.
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66543 345666666432 2222222 2578999999 89999999988663
No 47
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.91 E-value=1.7e-23 Score=211.75 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=143.7
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g 534 (669)
..+|||+.+..|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +++| +.|.|.+|.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G------~~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPG------HALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCC------CEEEEecCcC
Confidence 467999998767777899999999865 36789988754 25999999998 6998 8999999999
Q ss_pred CcccCC-CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 535 NFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 535 ~F~lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
.|.+.. +..+++||||+||||||+++++++++.. + ..++++||||+|+.+ |++|++||+++.+....++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G-HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C-CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 887653 4567999999999999999999988752 2 457899999999998 999999999999877777888888
Q ss_pred ecCCCCcc-cccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGSQKE-YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~~k~-yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
|+++.... +..+.+.+. + ..+.++..+|+||| +.|++++.+.|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~vyicGp-~~m~~~~~~~L~~ 208 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---L-PPLTRDDVVYLCGA-PSMVNAVRRRAFL 208 (222)
T ss_pred ccCCCCCcccccchhhhh---h-ccccCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 88654321 111112111 1 11235689999999 8999999999976
No 48
>PRK12359 flavodoxin FldB; Provisional
Probab=99.90 E-value=7.4e-23 Score=198.00 Aligned_cols=143 Identities=21% Similarity=0.344 Sum_probs=123.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|++.|+|+|+|||||.+|++|++.+. ...++++++++++.++ +.+++.+||++||||.|++|+++..|++
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg----~~~v~v~~i~~~~~~~------l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG----EELVDLHNLKDDPPKL------MEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC----CCeEEEEEcccCChhH------HccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 58999999999999999999999873 3347888999988877 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCc-ch-HHHHHHHHHHHHHHHHcCCeEEecc---------------------eee-c
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL---------------------GLG-D 219 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~i~~~---------------------g~g-D 219 (669)
.|.+.. |+||++|+||+||+ .| ++||.+++.+.++|++.||+.+... |+. |
T Consensus 71 ~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 987754 89999999999998 58 8999999999999999999887643 221 3
Q ss_pred CCC---CcHHHHHHHHHHHHHHHHh
Q 005924 220 DDQ---CIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 220 ~~~---~~e~~f~~W~~~l~~~L~~ 241 (669)
+++ -.++++++|.+++.+.+..
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHh
Confidence 332 3689999999999877754
No 49
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=2.5e-23 Score=211.43 Aligned_cols=178 Identities=23% Similarity=0.339 Sum_probs=142.7
Q ss_pred CChHHHHHHhcCCC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeC
Q 005924 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (669)
..+|||+.+..|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +++| +.|.|.+|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G------~~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTG------ERLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCC------CEEEEeCCC
Confidence 35789988874544 4899999999865 57899999854 25899999965 8998 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc-CCccEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELILA 612 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~-g~~~~l~~a 612 (669)
|.|.++. ..+++||||+|||||||+++++++.. .+ ...+++||||+|+.+ |.+|.++|+++++. ..+++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9999864 34799999999999999999999875 22 456899999999998 99999999999865 456788888
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+.. .++|+++.+.+. +.++..+|+||| +.|++++.+.|.+
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~ 214 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRA 214 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHH
Confidence 998642 234665544331 235689999999 8999999999865
No 50
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.90 E-value=2.5e-23 Score=215.14 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=145.2
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (669)
+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||+++++| +.+.+.+|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCcC
Confidence 4578999988756555699999999964 4789999873 38899999999998 8999999999
Q ss_pred C-cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 535 ~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
. |.++....+|+||||+||||||+++++++.+.. +...++++|||+.|+.+ |++|+++|+++.+. .++++.+++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 7 666543568999999999999999999998762 22357899999999998 99999999999987 667888888
Q ss_pred ecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 614 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
||+.. ..+++++.+.+.. ....+..+|+||| +.|++++.+.|.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 87653 3456666544321 1114679999999 89999999999764
No 51
>PRK05713 hypothetical protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=220.77 Aligned_cols=175 Identities=18% Similarity=0.228 Sum_probs=138.3
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC-
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS- 534 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g- 534 (669)
+.+|||+.+..+....|+|||+|.|.. .+.++|+|+.+. .|.+|+||.++++| +.|.+..|.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCCC
Confidence 468999988646556899999999865 478999997542 59999999999999 8999999987
Q ss_pred CcccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 535 NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 535 ~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
.|.++.+ ..+|+||||+|||||||+|++++.+. .+ ...+++|+||+|+.+ |++|.+||++|.+...++++....
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 6666644 45899999999999999999998765 22 347899999999998 999999999999877677777766
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++ ++++.+.+ +. ....+..+|+||| ++|++++.+.|.+
T Consensus 258 ~~------~~~~~l~~----~~-~~~~~~~vyiCGp-~~mv~~~~~~L~~ 295 (312)
T PRK05713 258 AA------QLPAALAE----LR-LVSRQTMALLCGS-PASVERFARRLYL 295 (312)
T ss_pred Cc------chhhhhhh----cc-CCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 54 23333221 10 1224578999999 8999999999865
No 52
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.89 E-value=6e-23 Score=208.77 Aligned_cols=184 Identities=22% Similarity=0.312 Sum_probs=142.5
Q ss_pred CChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|++.. .|.+|.||+ ++++| +.+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~g 91 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWASG 91 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEEc
Confidence 4688988876442 34799999999864 467999998542 489999997 59998 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
|.|.|.++.+..+++||||+|||||||++++++... .+ ...+++|||++|+.+ |++|.++|+++.+....++++.
T Consensus 92 P~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (231)
T cd06215 92 PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLD---TR-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLHL 166 (231)
T ss_pred CcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEE
Confidence 999999876556899999999999999999998765 22 357899999999998 9999999999998766778888
Q ss_pred EEecCCCC-cccccchhHHhHHHHHhccc--CCCEEEEeCCchhhHHHHHHHHHH
Q 005924 612 AFSREGSQ-KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 612 afSR~~~~-k~yVq~~l~~~~~~i~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+.+++... ..+.++++.+. .+.+.+. .+..+|+||| ++|++.+.+.|.+
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~ 218 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAE 218 (231)
T ss_pred EEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHH
Confidence 88886542 22233333221 1222222 2468999999 8999999999875
No 53
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.89 E-value=6.9e-23 Score=210.72 Aligned_cols=184 Identities=20% Similarity=0.317 Sum_probs=143.1
Q ss_pred CChHHHHHHhcC--C---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEE
Q 005924 456 PPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (669)
Q Consensus 456 ~p~~~li~~~~p--~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (669)
..+||++.+.++ . ..+|+|||+|.|.. +.++|+|+.. ..|.+|+||++ +++| +.|.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~G------d~v~i 99 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVG------DVLEV 99 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCC------CEEEE
Confidence 467888877643 2 46799999999854 4788887743 14999999998 9999 89999
Q ss_pred EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEE
Q 005924 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (669)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l 609 (669)
.+|.|.|.++.+..+++||||+|||||||+++++++... ....+++||||+|+.+ +.+|+++|+++.+...++++
T Consensus 100 ~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~----~~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 174 (247)
T cd06184 100 SAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE----GPGRPVTFIHAARNSA-VHAFRDELEELAARLPNLKL 174 (247)
T ss_pred EcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc----CCCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEE
Confidence 999999999865568999999999999999999998752 1457899999999998 89999999999887677889
Q ss_pred EEEEecCCCCc---ccc-cchhHHhHHHHHh-cccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 610 ILAFSREGSQK---EYV-QHKMMDKAAQLWS-LLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 610 ~~afSR~~~~k---~yV-q~~l~~~~~~i~~-ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+.++||+.... .+. +.++. .+.+.+ +..++..+|+||| +.|++++.+.|.+.
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~--~~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRID--LALLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred EEEECCCCcccccccccccCccC--HHHHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99999875432 111 11221 112222 2235789999999 89999999998763
No 54
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.89 E-value=7.3e-23 Score=206.54 Aligned_cols=177 Identities=19% Similarity=0.257 Sum_probs=137.7
Q ss_pred CCChHHHHHHhcCC----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 530 (669)
...+|||+.+.++. ..+|+|||+|+|.. +.++|+|+++. ..|..|.||+++++| +.+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~--------~~g~~s~~l~~l~~G------~~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYP--------DHDGVTEQLGRLQPG------DTLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcC--------CCCcHhHHHHhCCCC------CEEEEE
Confidence 35789998875442 35899999999853 78999998542 136779999999999 899999
Q ss_pred EeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEE
Q 005924 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (669)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (669)
+|.|+|.++ +|+||||+|||||||+++++++.. .+ ...+++|+||+|+.+ |++|++||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 999998763 589999999999999999999875 22 456899999999988 9999999999853 3567
Q ss_pred EEEecCCCCcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 611 LAFSREGSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 611 ~afSR~~~~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.++||++. ..|.+.++.+ +.+.+++. .++.+|+||| +.|++++.+.|.+.
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 78888654 3455555532 22333333 3578999999 89999999998653
No 55
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.89 E-value=7.9e-23 Score=209.88 Aligned_cols=180 Identities=23% Similarity=0.384 Sum_probs=143.0
Q ss_pred CChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+.+| . ..+|+|||+|.|....+.++|+|+.+. +|.+|.||++ +++| +.|.|.+
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEEC
Confidence 467999887643 2 357999999998512578999998542 4889999986 8898 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
|.|.|.++.+..+++||||+||||||+++++++... .+ ...+++||||+|+.+ |.+|.+||+++.+...+++++.
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 999999987656899999999999999999998765 22 457899999999988 9999999999987777778888
Q ss_pred EEecCCCCcccccchhHHhHHHHHhccc--CCCEEEEeCCchhhHHHHHHHHHH
Q 005924 612 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~i~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
.+|++ ...+++...+ +.+++. +++.+|+||| +.|++++.+.|.+
T Consensus 186 ~~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~ 231 (243)
T cd06216 186 LYTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGP-PGFLDAAEELLEA 231 (243)
T ss_pred EEcCC-ccCCCCCHHH------HHHhccCcccCeEEEECC-HHHHHHHHHHHHH
Confidence 88886 2344443221 112221 3579999999 8999999999875
No 56
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.88 E-value=1.6e-22 Score=206.29 Aligned_cols=183 Identities=21% Similarity=0.293 Sum_probs=142.1
Q ss_pred CChHHHHHHhcC--CC--CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEE
Q 005924 456 PPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (669)
Q Consensus 456 ~p~~~li~~~~p--~l--~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~ 530 (669)
..+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 467999888654 22 2499999999865 468999998542 4899999986 7898 899999
Q ss_pred EeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEE
Q 005924 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (669)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (669)
+|.|.|.++....++++|||+||||||+++++++... .+ ...+++|+||+|+.+ |.+|++||.++.+....++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRD---LG-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 9999998865445799999999999999999999775 22 457899999999998 899999999999876677888
Q ss_pred EEEecCCC-----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 611 LAFSREGS-----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 611 ~afSR~~~-----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.++||+.. .++++.+.+.+ ++.. ...+..+|+||| +.|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~---~~~~-~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIA---ELVP-PLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHH---hhCC-CccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88998632 12333332211 1111 124679999999 89999999999763
No 57
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.88 E-value=1.9e-22 Score=218.45 Aligned_cols=187 Identities=20% Similarity=0.340 Sum_probs=142.7
Q ss_pred CCChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (669)
...+|||+.+.+| . ...|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 3468999988643 1 2469999999984 478999998652 489999997 59999 899999
Q ss_pred EeCCCcccCCCC--CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC-cc
Q 005924 531 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 607 (669)
Q Consensus 531 ~~~g~F~lp~~~--~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~-~~ 607 (669)
+|.|+|.++.+. .+++||||+|||||||++++++.+.. + ...+++||||+|+.+ |.+|++||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999887542 37999999999999999999987652 2 347899999999998 9999999999987644 47
Q ss_pred EEEEEEecCCCCcccccchhHH-hHHH-HHhcc--cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 608 ELILAFSREGSQKEYVQHKMMD-KAAQ-LWSLL--SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 608 ~l~~afSR~~~~k~yVq~~l~~-~~~~-i~~ll--~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+++.++||+.....+.+.++.. .... +.++. .....+|+||| +.|++++.+.|.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8888999875433333333321 1111 22222 23468999999 89999999999753
No 58
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.88 E-value=2.7e-22 Score=205.43 Aligned_cols=187 Identities=22% Similarity=0.351 Sum_probs=143.0
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (669)
...+||++.+..|. ..+|+|||+|.+.. +.++|+|+.+. .|.+|.||. ++++| +.+.|.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEe
Confidence 45789999987442 36899999998864 37888888542 599999997 69998 899999
Q ss_pred EeCCCcccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcC-CccE
Q 005924 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 608 (669)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g-~~~~ 608 (669)
+|.|.|.++.+ ..+++||||+|||||||+++++++.. .+ ..++++|+||+|+.. |++|.+||+++.+.. ..++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALA---RE-PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988865 46899999999999999999999775 22 357899999999998 999999999998664 3667
Q ss_pred EEEEEecCCCCcccccchhHHh-HHHHH-hcc--cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 609 LILAFSREGSQKEYVQHKMMDK-AAQLW-SLL--SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 609 l~~afSR~~~~k~yVq~~l~~~-~~~i~-~ll--~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+..++|+++....+...++.+. ..... +++ .++..||+||| +.|++.+.+.|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7788888654322223333221 11111 121 24579999999 88999999998753
No 59
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.88 E-value=1.8e-22 Score=209.85 Aligned_cols=175 Identities=19% Similarity=0.228 Sum_probs=137.3
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (669)
..+|||+.+.+|...+|+|||++.+ .+.++|+|+. .|.+|+||+++++| +.|.|.+|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCCC
Confidence 4689999887676667999999875 4689998872 38999999999999 89999999996
Q ss_pred -cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
|.++.+..+|+||||+|||||||+|++++... .+...++++||||+|+.+ |.+|++||++|.+.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88876566899999999999999999998764 222346899999999998 999999999998743 2455566
Q ss_pred cCCC----CcccccchhHHhHHHHHhccc--CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 615 REGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 615 R~~~----~k~yVq~~l~~~~~~i~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
+... ..+++++.+.+. .+. .+..+|+||| +.|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 5433 234555433321 121 4678999999 89999999998753
No 60
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.88 E-value=2.5e-22 Score=206.83 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=134.4
Q ss_pred CChHHHHHHhcCC----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p~----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+..|. ..+|+|||+|.|.. .+.++|+|+.. |.+|+||.++++| +.|.|.+
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~G------d~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAG------DELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCC------CEEEEEe
Confidence 4678888886453 45899999998854 47889888742 7789999999999 8999999
Q ss_pred eCCC-cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEE
Q 005924 532 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (669)
Q Consensus 532 ~~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (669)
|.|+ |.++. ..+++||||+|||||||++++++... ...+++|||++|+.+ |.+|++||+++.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 9995 77774 46899999999999999999998764 236899999999998 9999999999853 222
Q ss_pred EEEecCC--CCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 611 LAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 611 ~afSR~~--~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
. +++++ ..++||++.+.+..... .+..||+||| +.|++++++.|.+
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~~~-----~~~~vyiCGp-~~mv~~~~~~L~~ 201 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLAEA-----RPDVVYACGP-EPMLKAVAELAAE 201 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhhcc-----CCCEEEEECC-HHHHHHHHHHHHh
Confidence 2 23332 24568888766544221 4689999999 8999999999875
No 61
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.88 E-value=4.2e-22 Score=202.75 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=144.1
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
...+||++.+..|. ...|+|||+|.+.. .+.++|+|+.+. .|.+|+||+++++| +.|.|.+
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEEC
Confidence 35789998887553 46899999998864 467999998542 49999999999998 8999999
Q ss_pred eCCCcccCCCCC-CCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc-CCccEE
Q 005924 532 RPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISEL 609 (669)
Q Consensus 532 ~~g~F~lp~~~~-~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~-g~~~~l 609 (669)
|.|.|.++.+.. .++||||+||||||+++++++.... .....+++|+|++|+.+ +.+|.+||+++.+. ...+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 999999876654 7999999999999999999998751 11357899999999988 99999999999876 356678
Q ss_pred EEEEecCCCC----cccccchhHHhHHHHHhc-ccCCCEEEEeCCchhhHH-HHHHHHHH
Q 005924 610 ILAFSREGSQ----KEYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMAR-DVHRTLHT 663 (669)
Q Consensus 610 ~~afSR~~~~----k~yVq~~l~~~~~~i~~l-l~~~~~iYvCG~a~~M~~-~V~~~L~~ 663 (669)
+.++|+++.. .+++++.+.... ... ...+..+|+||| +.|++ ++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 8888876432 345554332211 110 124578999999 89999 99999875
No 62
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.88 E-value=5.1e-22 Score=205.58 Aligned_cols=177 Identities=20% Similarity=0.293 Sum_probs=135.9
Q ss_pred CChHHHHHHhcCCC---CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p~l---~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~ 531 (669)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++.. .|..|+||+ ++++| +.|.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEec
Confidence 46899988865543 6899999999976 468889998552 499999999 69999 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCcc-EEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-ELI 610 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~-~l~ 610 (669)
|.|+|.++..+..|++|||+|+|||||+||+++... .+ . .++.|+|++|+.+ |..|+|| +.+....... .+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~---~~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLD---RG-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHH---hC-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 999999998777799999999999999999999876 23 4 8999999999999 9999999 8887765443 333
Q ss_pred EEEecCCCCcccccchhHHhHHHHHhcccCC-CEEEEeCCchhhHHHHHHHHHH
Q 005924 611 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 611 ~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~-~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
..+++.. ..+|.. ...+...+... .++|+||| .+|+++|...|.+
T Consensus 172 ~~~~~~~-~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~ 217 (266)
T COG1018 172 LYTERGK-LQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEA 217 (266)
T ss_pred EEEecCC-cccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 3333221 122221 11121223333 79999999 7899999998854
No 63
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.88 E-value=4.4e-22 Score=200.61 Aligned_cols=177 Identities=21% Similarity=0.292 Sum_probs=137.5
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (669)
...+||++.+..|. ...|+|||+|.|.. .+.++|+|+. .|.+|++|. ++++| +.|.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEE
Confidence 34689998886453 57899999999854 4689999973 378999999 79999 899999
Q ss_pred EeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEE
Q 005924 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (669)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (669)
+|.|.|.++.. .++++|||+||||||+++++++... .+ ..++++|+||+|+.+ |.+|.++|+++.+.. +++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAA---RG-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHh---cC-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 99999998765 6899999999999999999998775 22 357999999999998 999999999998876 66677
Q ss_pred EEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 611 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 611 ~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+..+++.. .......+ .... ....+..+|+||| +.|++++++.|.+
T Consensus 157 ~~~~~~~~-~~~~~~~~----~~~~-~~~~~~~vyicGp-~~m~~~v~~~l~~ 202 (216)
T cd06198 157 VIDSPSDG-RLTLEQLV----RALV-PDLADADVWFCGP-PGMADALEKGLRA 202 (216)
T ss_pred EEeCCCCc-ccchhhhh----hhcC-CCcCCCeEEEECc-HHHHHHHHHHHHH
Confidence 66655332 11111111 0000 0124579999999 8999999999876
No 64
>PRK09271 flavodoxin; Provisional
Probab=99.87 E-value=9e-22 Score=189.44 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=117.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|+|||||++|++|++.|.+. |+.+++.++++.+.++ +..++.++++++|++||||.|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEA--GHEVDWVETDVQTLAE--YPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhC--CCeeEEEecccccccc--cccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 5899999999999999999999999987 8888888887766443 22336688999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCC---CcHHHHHHHHHHHHHH
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPE 238 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~f~~W~~~l~~~ 238 (669)
+|.... .++++++|||+||+.| ++||.+++.++++|++.. +..+.+... ...+.+.+|.+.+++.
T Consensus 77 ~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 997643 4688999999999999 899999999999997642 333343321 2347889999998888
Q ss_pred HH
Q 005924 239 LD 240 (669)
Q Consensus 239 L~ 240 (669)
|.
T Consensus 147 ~~ 148 (160)
T PRK09271 147 CK 148 (160)
T ss_pred hh
Confidence 73
No 65
>PRK06756 flavodoxin; Provisional
Probab=99.87 E-value=1.8e-21 Score=184.80 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=118.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC-ccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
|++++|+|+|+|||||++|+.|++++.+. |+.++++++.+.. ..+ +.+++.|+|++||||.|.+|+++..|
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~--g~~v~~~~~~~~~~~~~------~~~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRET--ENEIEVIDIMDSPEASI------LEQYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhc--CCeEEEeehhccCCHHH------HhcCCeEEEEeCCCCCCCCcHHHHHH
Confidence 57899999999999999999999999877 8889998887653 233 78899999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~ 233 (669)
++.|.... ++++++++||+|++.|+|||.+.+.+.++|+++|++.+.+....+-. ..++++++|.+
T Consensus 73 l~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~~ 138 (148)
T PRK06756 73 YDAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCLQ 138 (148)
T ss_pred HHHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHHH
Confidence 99986543 88999999999999999999999999999999999999887666433 44667765543
No 66
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.87 E-value=3.5e-22 Score=212.83 Aligned_cols=184 Identities=12% Similarity=0.132 Sum_probs=135.2
Q ss_pred CChHHHHHHhcC-C-----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEE
Q 005924 456 PPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 529 (669)
Q Consensus 456 ~p~~~li~~~~p-~-----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v 529 (669)
..+||++.+..+ . ...|+|||+|+|.. .+.++|+|+.+. .|.+|+||+++++| +.|.+
T Consensus 82 f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~v 145 (325)
T PTZ00274 82 LKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLLF 145 (325)
T ss_pred CCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEEE
Confidence 457777775423 1 23699999999965 578999998653 69999999999999 89999
Q ss_pred EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhc--CCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC-c
Q 005924 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-I 606 (669)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~--g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~-~ 606 (669)
.+|.+.|.++.+..+|+||||+|||||||++++++.+..... +....+++|+||+|+.+ |.+|++||+++++... .
T Consensus 146 ~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~ 224 (325)
T PTZ00274 146 RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNR 224 (325)
T ss_pred eCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCc
Confidence 998666665544457999999999999999999988753211 11335899999999998 9999999999988644 5
Q ss_pred cEEEEEEecCCC------CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHH
Q 005924 607 SELILAFSREGS------QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRT 660 (669)
Q Consensus 607 ~~l~~afSR~~~------~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~ 660 (669)
++++.+.|++.. ..++|.+.+... +..... .+..+|+||| ++|++.|...
T Consensus 225 f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 225 FKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred EEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 788888887522 234554433111 111111 2257999999 8999998643
No 67
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.87 E-value=5.5e-22 Score=205.98 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=136.0
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (669)
..+|||+.+.+|...+|+|||+|.+ .+.++|+|+. .|.+|++|+++++| +.|.|.+|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCCC
Confidence 4689999887677678999999853 4789999973 38999999999999 89999999996
Q ss_pred -cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
|.++.+..+|++|||+||||||+++++++... ++...++++||||+|+.+ |++|++||++|.+.. .+...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 88776556899999999999999999998764 222346899999999998 999999999998743 2344455
Q ss_pred cCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 615 REGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 615 R~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
++.. ..+++++.+.+.. + .- ..+.++|+||| +.|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~-~~-~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--L-KD-IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--C-CC-ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4322 2345554433210 0 00 13578999999 89999999998763
No 68
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.87 E-value=1.1e-21 Score=207.55 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=138.8
Q ss_pred CChHHHHHHhcCC-------CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEE
Q 005924 456 PPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 528 (669)
Q Consensus 456 ~p~~~li~~~~p~-------l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~ 528 (669)
..+|||+.+.++. ...|+||++|+|.. .+.++|+|+.+...........|.+|+||+++++| +.|.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEEE
Confidence 4678988876442 24699999999854 57899999875211100011259999999999999 8999
Q ss_pred EEEeCCCcccCCC---------------CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCccccc
Q 005924 529 IFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 593 (669)
Q Consensus 529 v~~~~g~F~lp~~---------------~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly 593 (669)
|.+|.|.|.++.+ ...|++|||+|||||||++++++... ......++.|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-HhhH
Confidence 9999999866432 12589999999999999999998765 221345899999999998 9999
Q ss_pred HHHHHhhHhcCCccEEEEEEecCCC-----CcccccchhHHhHHHHHhccc------CCCEEEEeCCchhhHH-HHHHHH
Q 005924 594 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLS------KEGYLYVCGDAKGMAR-DVHRTL 661 (669)
Q Consensus 594 ~del~~~~~~g~~~~l~~afSR~~~-----~k~yVq~~l~~~~~~i~~ll~------~~~~iYvCG~a~~M~~-~V~~~L 661 (669)
+++|+++. ....++++.+.|+++. ..++|...+.+.. ....+ ++..+|+||| ++|++ .+.+.|
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH---LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh---cCCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 99999965 4456788888888532 2456665433321 11111 3468999999 89998 567777
Q ss_pred HH
Q 005924 662 HT 663 (669)
Q Consensus 662 ~~ 663 (669)
.+
T Consensus 288 ~~ 289 (300)
T PTZ00319 288 EK 289 (300)
T ss_pred HH
Confidence 54
No 69
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.86 E-value=8.8e-22 Score=216.12 Aligned_cols=186 Identities=18% Similarity=0.157 Sum_probs=153.3
Q ss_pred hHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhheeeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----CC
Q 005924 9 LVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GK 83 (669)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 83 (669)
..++|.++|+++..+ ++++.+|||+ ||. +||++.. +++++|.+ .+
T Consensus 198 ~~~~v~~~l~~l~~~--~l~~~~i~p~-HG~-------i~~~~~~--------------------~~~~~Y~~~~~~~~~ 247 (394)
T PRK11921 198 FSPLVIKKIEEILSL--NLPVDMICPS-HGV-------IWRDNPL--------------------QIVEKYLEWAANYQE 247 (394)
T ss_pred hHHHHHHHHHHHHhc--CCCCCEEEcC-Ccc-------EEeCCHH--------------------HHHHHHHHHhhcCCc
Confidence 456789999999976 7789999999 999 8998764 45555543 46
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--hhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIK--ARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~--~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
++++|+|+|+|||||++|+.|++++. .. |++++++++.+.+.++ ++.++.+++.+||++||||.|.+| .+..|
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~--g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~~ 322 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKANK--DVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAAI 322 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcCC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHHH
Confidence 88999999999999999999999998 45 7889999999888776 666778899999999999888885 48889
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (669)
++++.... ++||++++|| +|+|+|.+.+.+.++|+++|++.+.+.......- ...+.+.+|.+.+...
T Consensus 323 l~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 323 LEEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998764 8899999999 7999999999999999999999988765554332 2345556777666543
No 70
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.86 E-value=2.7e-21 Score=193.98 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=133.0
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (669)
...+|||+.+..|....|+|||+|.|.. .+.++|+|+... ..+.+|.||++ +++| +.|.|.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--------~g~~~s~~l~~~~~~G------d~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--------ASRGGSRYMHELLRVG------DELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--------CCCchHHHHHhcCCCC------CEEEEcCCc
Confidence 4578999998866667899999999864 478999998542 12347999976 7888 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|.|.++.+ .+|+||||+||||||+++++++... ...+++||||+|+.+ |.+|.++|+++. .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988653 5799999999999999999998764 236899999999988 899999999987 22 344556
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++. ...++++.+. .+.++..+|+||| +.|++++.+.|.+
T Consensus 158 ~~~~-~~~~~~~~~~--------~~~~~~~vyicGp-~~m~~~~~~~l~~ 197 (211)
T cd06185 158 DDEG-GRLDLAALLA--------APPAGTHVYVCGP-EGMMDAVRAAAAA 197 (211)
T ss_pred CCCC-CccCHHHHhc--------cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 6543 2223332221 1234679999999 8999999999975
No 71
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.85 E-value=1.4e-20 Score=182.36 Aligned_cols=140 Identities=26% Similarity=0.442 Sum_probs=117.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
++.|+|+|+||||+++|++|++.+.. ..++++++++.+..+ +.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~~~------l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASKED------LNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCHhH------HhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 48999999999999999999999863 347888998877666 88999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcc-h-HHHHHHHHHHHHHHHHcCCeEEecc------------e---------eecCC
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL------------G---------LGDDD 221 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~------------g---------~gD~~ 221 (669)
|.... ++++++++||+||+. | +|||.+.+.+++.|++.|++.+... . .-|..
T Consensus 71 l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 86543 789999999999984 7 6999999999999999999998765 0 11222
Q ss_pred --C-CcHHHHHHHHHHHHHHH
Q 005924 222 --Q-CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 222 --~-~~e~~f~~W~~~l~~~L 239 (669)
+ -.++.+.+|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 1 35788899998876553
No 72
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.85 E-value=1.2e-20 Score=176.69 Aligned_cols=135 Identities=24% Similarity=0.333 Sum_probs=115.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARFYKW 164 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-~~a~~F~~~ 164 (669)
|+|+|+|+||||+++|++|++.+.+. |+.++++++.+.+..+ +.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~--g~~v~~~~~~~~~~~~------l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEA--GAEVDLLEVADADAED------LLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhc--CCeEEEEEcccCCHHH------HhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 58999999999999999999999887 8889999999887766 78899999999999999999 999999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHH
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWREL 234 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~ 234 (669)
|.... ++|+++++||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.+.
T Consensus 73 l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 87643 78999999999999998 999999999999999999998865554332 223334455543
No 73
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.85 E-value=4.9e-21 Score=193.90 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=121.0
Q ss_pred CChHHHHHHhcCC-------------------CCceeccccCCCCCC--CCeEEEEEEEEEecCCCCCccCCcccHhhhh
Q 005924 456 PPIGVFFAAVAPH-------------------LQPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (669)
Q Consensus 456 ~p~~~li~~~~p~-------------------l~pR~YSIsSsp~~~--~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~ 514 (669)
..+||++.+.+|. ...|+|||+|+|... .+.++|+|+. .|.+|+||.+
T Consensus 26 ~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~ 94 (220)
T cd06197 26 WTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQ 94 (220)
T ss_pred cCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHH
Confidence 3568877775443 135999999999654 2788888873 3899999998
Q ss_pred cCC-----CCCCCCccEEEEEEeCCCcccCC---CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecC
Q 005924 515 AIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRN 586 (669)
Q Consensus 515 l~~-----g~~~~~~~~v~v~~~~g~F~lp~---~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~ 586 (669)
... | +.+.+.+|.|.|.++. +..+++||||+|||||||++++++... .+....+++|+||+|+
T Consensus 95 ~~~~~~~~G------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~---~~~~~~~v~l~~~~r~ 165 (220)
T cd06197 95 VARRLREQG------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILS---SRNTTWDITLLWSLRE 165 (220)
T ss_pred hhhcccCCC------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHh---cccCCCcEEEEEEecc
Confidence 544 5 8999999999999875 345799999999999999999998764 2223578999999999
Q ss_pred CCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 587 RRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 587 ~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.+ |.+|.+||.++... ...+..... +.||+||| ++|++.|.+.+.+.
T Consensus 166 ~~-~~~~~~el~~~~~~--~~~~~~~~~---------------------------~~v~~CGP-~~m~~~~~~~~~~~ 212 (220)
T cd06197 166 DD-LPLVMDTLVRFPGL--PVSTTLFIT---------------------------SEVYLCGP-PALEKAVLEWLEGK 212 (220)
T ss_pred hh-hHHHHHHHHhccCC--ceEEEEEEe---------------------------ccEEEECc-HHHHHHHHHHhhhc
Confidence 98 99999999887541 111111110 17999999 89999999988753
No 74
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.85 E-value=7.7e-21 Score=196.23 Aligned_cols=176 Identities=22% Similarity=0.329 Sum_probs=145.7
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (669)
...+|||+.+.+|....|+|||+|.+.. .+.++|.+++.. .|.+|.++..+++| +.|.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCC
Confidence 3689999999878899999999999965 577777777653 59999999999999 7899999999
Q ss_pred CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEe
Q 005924 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (669)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afS 614 (669)
++.+..+..+|+++||+|||+||+++++++... ++ ...+++++||.|++. |.++.+||+++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 887776667889999999999999999998875 45 568999999999999 99999999999875 3555554
Q ss_pred cCCC--Ccccc-cchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 615 REGS--QKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 615 R~~~--~k~yV-q~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++. .+++| ++.+.+... .+...+|+||| +.|++.+.+.+.+
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~ 213 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKE 213 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHh
Confidence 333 57788 666655321 14679999999 9999999988865
No 75
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.85 E-value=6.7e-21 Score=196.63 Aligned_cols=165 Identities=21% Similarity=0.296 Sum_probs=131.1
Q ss_pred CChHHHHHHhcCCC---CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p~l---~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
..+|||+.+..|.. .+|+|||+|+| .+.++|+|+. .|..|+||.++++| ++|.|.+|
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~gP 91 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRGP 91 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEcc
Confidence 46899988864543 68999999998 4789999873 38899999999999 89999999
Q ss_pred CCC-cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 533 PSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 533 ~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
.|+ |.++. ..+|+||||+||||||+++++++... ...+++|+|++|+.+ |++|++||+++.+ +++
T Consensus 92 ~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~ 157 (250)
T PRK00054 92 LGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK------KGVEVTTVLGARTKD-EVIFEEEFAKVGD------VYV 157 (250)
T ss_pred cCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH------cCCcEEEEEEcCCHH-HhhhHHHHHhcCC------EEE
Confidence 995 88864 45799999999999999999998864 235799999999988 9999999998432 222
Q ss_pred EEecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 612 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 612 afSR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
. ++++. .++||++.+.+.. ....+||+||| +.|++++.+.|.+
T Consensus 158 ~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~ 202 (250)
T PRK00054 158 T-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKE 202 (250)
T ss_pred E-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 2 23332 4568887665432 23468999999 8999999999876
No 76
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.84 E-value=1.1e-20 Score=192.96 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=128.1
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (669)
...+|||+.+..|....|+|||+|+| +.++|+|+. .|.+|+||+++++| +.+.+.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCC
Confidence 45689999987566667999999998 678888863 38899999999999 8999999999
Q ss_pred C-cccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 535 ~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
+ |.++ .+|+||||+|||||||++++++... . .+++|+||+|+.+ |.+|++||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998764 2 7899999999998 99999999982 1 222222
Q ss_pred ecCC--CCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~--~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
.+. ...+++++.+.+.. ......+|+||| ++|++++.+.|.+
T Consensus 145 -~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~ 188 (233)
T cd06220 145 -DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDE 188 (233)
T ss_pred -eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHh
Confidence 221 13456666543321 223468999999 8999999999865
No 77
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.83 E-value=2.5e-20 Score=191.48 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=130.0
Q ss_pred CChHHHHHHhcC---CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p---~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
..+|||+.+..| ....|+|||+|.+.. .+.++|+|+. .|..|+||.++++| +.+.|.+|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEcc
Confidence 467898888753 456899999999854 5789998873 38899999999999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|+|.+..+..++++|||+|||||||++++++... ...+++||||+|+.+ |.+|.+||+++. . ....
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 99776554446799999999999999999998764 236899999999998 999999998872 1 1222
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.++++. ..+++++... ... ...+..+|+||| +.|++++++.|.+.
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~ 200 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEW 200 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhh
Confidence 344432 3345554311 111 123468999999 89999999999775
No 78
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.83 E-value=5.1e-20 Score=173.36 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=105.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE-EecCCCCC--ccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYA--MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~-v~dl~~~~--~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
|+++|+|+|+|||||++|++|++.+... ++.++ ++++.+++ ..+ +.+++.+||++||||.|.+|+++..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~------~~~~d~iilgs~t~~~g~~p~~~~~ 72 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD--GHEVDILHRIGTLADAPLD------PENYDLVFLGTWTWERGRTPDEMKD 72 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC--CeeEEecccccccccCcCC------hhhCCEEEEEcCeeCCCcCCHHHHH
Confidence 5799999999999999999999999876 77776 55666432 223 6678999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCC---CcHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELV 235 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~f~~W~~~l 235 (669)
|++++.. +++++++||+||+.| ++||.+++.++++|++++ +..+.+... ...+.+.+|.+++
T Consensus 73 fl~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 73 FIAELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred HHHHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeEecCCcccccHHHHHHHHHHh
Confidence 9999853 578999999999999 799999999999997762 333333221 2456778998875
No 79
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.83 E-value=2.1e-20 Score=196.20 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=129.4
Q ss_pred CChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEE-EEEEeC
Q 005924 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~~ 533 (669)
..+|||+.+..+. ..+|+|||+|.+.. .+.++|+|+. .|..|++|+++++| +.| .|.+|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcCC
Confidence 4689999886443 34689999998744 5789999874 38899999999999 899 799999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|..+.+ .+++||||+|+||||+++++++... . ..+++|+||+|+.+ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~---~---~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKE---A---GNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHH---C---CCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 97655433 5799999999999999999998654 2 25799999999998 99999999988652 222 2
Q ss_pred ecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+.++. .+++|++.+.+... -..+...||+||| ++|++.+.+.|.+
T Consensus 156 ~~d~~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKELLE----SGKKVDRVVAIGP-VIMMKFVAELTKP 202 (281)
T ss_pred cCCCCcCcccchHHHHHHHhh----cCCCCcEEEEECC-HHHHHHHHHHHHh
Confidence 33332 34566665443211 1112457999999 8999999998865
No 80
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.83 E-value=2.4e-20 Score=208.71 Aligned_cols=188 Identities=15% Similarity=0.107 Sum_probs=149.2
Q ss_pred HHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhheeeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----CCC
Q 005924 10 VKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GKT 84 (669)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 84 (669)
.++|.++|++++.+ ++++.+||++ ||. +||++.. ++++.|.+ .++
T Consensus 203 ~~~v~~~l~~~~~l--~l~~~~i~p~-HG~-------i~r~~~~--------------------~~l~~Y~~~~~~~~~~ 252 (479)
T PRK05452 203 SRLVTPKITEILGF--NLPVDMIATS-HGV-------VWRDNPT--------------------QIVELYLKWAADYQED 252 (479)
T ss_pred HHHHHHHHHHHhhc--CCCCCEEECC-CCc-------eEeCCHH--------------------HHHHHHHHHhhccCcC
Confidence 34788999999976 7789999999 999 8997654 44444442 467
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
+++|+|+|+|||||++|+.|++.+.+.-.|++++++++++.+.++ ++.++.+++.++|+|||||+|.+| .+..|++.
T Consensus 253 kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~ 329 (479)
T PRK05452 253 RITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEE 329 (479)
T ss_pred cEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHHHHH
Confidence 899999999999999999999999865114678999999988776 556667899999999999887777 68989999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHH
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELD 240 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 240 (669)
|.... ++||++++|| +|+|+|.+++.+.++|+++|++.+ +.......- ...+.+..+.+.+..++.
T Consensus 330 l~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 330 ITGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred hhccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 87764 8999999999 899999999999999999999986 334443321 234445566666665554
No 81
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.82 E-value=4.6e-20 Score=193.07 Aligned_cols=144 Identities=33% Similarity=0.529 Sum_probs=125.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
..+-.|||+||||||+++|+.+++.+.+. ...++++|++ |+..+ ++ +.+++|++.|+-+|+|| +..|+
T Consensus 46 ~~~~~vfy~s~~GtA~~~A~~~~e~~~sl--d~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~ 113 (601)
T KOG1160|consen 46 LIKSKVFYSSLTGTAKKAAKSVHEKLKSL--DELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFL 113 (601)
T ss_pred CccceEEEEeccchHHHHHHHHHHHHHhc--ccchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHH
Confidence 44558999999999999999999999987 6668899998 88777 77 67777777777799988 88899
Q ss_pred HHHhcCCCC----CCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDR----GPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWP 237 (669)
Q Consensus 163 ~~L~~~~~~----~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~ 237 (669)
+||++...+ +.+|++++||||||||+.| ++||..++++|+++..|||.|+.|+|++|-++ ..+++|...+.+
T Consensus 114 ~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~ 190 (601)
T KOG1160|consen 114 QWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAE 190 (601)
T ss_pred HHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHH
Confidence 999875543 4679999999999999997 99999999999999999999999999998764 344499999999
Q ss_pred HHHh
Q 005924 238 ELDQ 241 (669)
Q Consensus 238 ~L~~ 241 (669)
.|++
T Consensus 191 ~Lk~ 194 (601)
T KOG1160|consen 191 TLKD 194 (601)
T ss_pred HHcC
Confidence 9886
No 82
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.82 E-value=4.2e-20 Score=190.46 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=129.9
Q ss_pred CCChHHHHHHhcC-CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEE-EEEEe
Q 005924 455 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 532 (669)
Q Consensus 455 ~~p~~~li~~~~p-~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~ 532 (669)
...+|||+.+..+ ...+|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .+.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecC
Confidence 3468999888633 335799999998754 4788888873 38889999999999 788 69999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|+|.+.. ..+|+||||+||||||+++++++... ...+++|+||+|+.+ |.+|.+||+++.++ ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~------~~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE------AGNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHH------cCCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 99876543 35799999999999999999998664 225899999999998 99999999999652 2222
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++.. ..+|+++.+.+... + ......+|+||| ++|++.+.+.|.+
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred -eCCCCCCccccchHHHHHHHh---c-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 34332 34567665433221 1 123458999999 8999999998864
No 83
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.81 E-value=4.2e-19 Score=169.26 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=117.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|+++.|+|+|+|||||.+|+.|++.|... ++++.+......+... +..++.++++++|+|.|+.|+++..|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~--~~~~~~~~~~~~~~~~------~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD--GFEVDIDIRPGIKDDL------LESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC--CceEEEeecCCcchhh------hccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 68999999999999999999999999877 6666443333333222 357899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHH-HHHHHHHHHHHHHHcC--CeEEecceee--cCCC--CcHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVPLGLG--DDDQ--CIEDDFTAWRELV 235 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~i~~~g~g--D~~~--~~e~~f~~W~~~l 235 (669)
..+.... +++++|++||+||+.|.. ||.++..+.+.++..| +....+.... |+.. ..++....|.+++
T Consensus 73 ~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 9998733 899999999999999977 9999999999999999 5555555444 3332 6889999999987
Q ss_pred HHH
Q 005924 236 WPE 238 (669)
Q Consensus 236 ~~~ 238 (669)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 654
No 84
>PLN02252 nitrate reductase [NADPH]
Probab=99.81 E-value=1.5e-19 Score=213.82 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=141.8
Q ss_pred CChHHHHHHhcC---CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p---~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
.++||++.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++++| +.|.|.+|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEecC
Confidence 467888777532 234799999999865 57899999876211100112359999999999999 89999999
Q ss_pred CCCcc--------cCCC--CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHh
Q 005924 533 PSNFK--------LPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (669)
Q Consensus 533 ~g~F~--------lp~~--~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~ 602 (669)
.|.|. ++.. ..++++|||+||||||+++++++.+.. .....+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 98764 3322 247999999999999999999988752 22457899999999998 9999999999998
Q ss_pred cC-CccEEEEEEecCC-C----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHH-HHHHHHH
Q 005924 603 EG-VISELILAFSREG-S----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHT 663 (669)
Q Consensus 603 ~g-~~~~l~~afSR~~-~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~-V~~~L~~ 663 (669)
.. ..++++.++|++. . .+++|...+.+.. ......+..+|+||| ++|++. +...|.+
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~ 877 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGP-PPMIEFACQPNLEK 877 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCC-HHHHHHHHHHHHHH
Confidence 74 5678888999853 1 3456655433221 111123568999999 899985 7777765
No 85
>PRK09267 flavodoxin FldA; Validated
Probab=99.80 E-value=1.1e-18 Score=169.58 Aligned_cols=142 Identities=25% Similarity=0.442 Sum_probs=117.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|+++.|+|+|+||||+++|++|++.+.. ..++++++.+.+..+ +.+++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~~~------l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASKED------FEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCHhh------HhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 5689999999999999999999999963 247888888876555 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcc-h-HHHHHHHHHHHHHHHHcCCeEEecc---ee-----------------ecC
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL---GL-----------------GDD 220 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~---g~-----------------gD~ 220 (669)
+.+.... |+++++++||+||+. | ++||.+.+.+.+.|++.|++.+... |. .|.
T Consensus 71 ~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 9885543 889999999999985 8 8999999999999999999877652 11 122
Q ss_pred CC---CcHHHHHHHHHHHHHHH
Q 005924 221 DQ---CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 221 ~~---~~e~~f~~W~~~l~~~L 239 (669)
+. -.++.+++|.+++.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 21 24688999999987654
No 86
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=7.2e-20 Score=195.06 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=125.0
Q ss_pred ChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeC
Q 005924 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 457 p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~ 533 (669)
.+|||+.+..|. ...|+|||+|++.. .+.++|+|++ .|..|++|.++++| +.+.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCCC
Confidence 468888776432 34599999999864 5789999974 38999999999999 899999998
Q ss_pred C--CcccC---CCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccE
Q 005924 534 S--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (669)
Q Consensus 534 g--~F~lp---~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~ 608 (669)
| .|.++ ....+++++||+|+||||+++++++... ++ .+++||||+|+++ |.+|+++|+++......+
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~~---~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~- 229 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---NG---NKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL- 229 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---cC---CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE-
Confidence 5 47663 2335699999999999999999998765 22 4899999999998 999999999986532221
Q ss_pred EEEEEecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 609 LILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 609 l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
.+..++. .+++|++.+.+. +...||+||| ..|++.|.+.|.+
T Consensus 230 ---~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~ 275 (320)
T PRK05802 230 ---NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDK 275 (320)
T ss_pred ---EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhh
Confidence 1112221 122333332211 2367999999 8999999998876
No 87
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.80 E-value=8.5e-19 Score=180.78 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=141.7
Q ss_pred ChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeC
Q 005924 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 457 p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~ 533 (669)
|.|+.+.+.+|. .--|+||..|++.. .+.+++.|++.. +|.+|.||.+++.| +.|.+++|.
T Consensus 83 p~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rGP~ 146 (286)
T KOG0534|consen 83 PIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRGPI 146 (286)
T ss_pred ccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEecCc
Confidence 455544444332 35799999999976 689999998653 59999999999999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC-ccEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELILA 612 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~-~~~l~~a 612 (669)
|+|.+.....+.+.|||+||||||+..++|+.+. +.....+++|+|++++++ |.++++||+.++++.. .+++..+
T Consensus 147 G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~---~~~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~ 222 (286)
T KOG0534|consen 147 GEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILK---DPEDTTKISLLYANKTED-DILLREELEELASKYPERFKVWYV 222 (286)
T ss_pred cceEecCCCcceEEEEecccchhhHHHHHHHHhc---CCCCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEE
Confidence 9999887667899999999999999999999886 223467899999999999 9999999999999866 8889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhccc---C-CCEEEEeCCchhhHHH-HHHHHH
Q 005924 613 FSREGS----QKEYVQHKMMDKAAQLWSLLS---K-EGYLYVCGDAKGMARD-VHRTLH 662 (669)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~i~~ll~---~-~~~iYvCG~a~~M~~~-V~~~L~ 662 (669)
.++++. ..+||..-+ +.+.+. + ...++|||| ++|... ++..|.
T Consensus 223 v~~~~~~w~~~~g~It~~~------i~~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le 274 (286)
T KOG0534|consen 223 VDQPPEIWDGSVGFITKDL------IKEHLPPPKEGETLVLICGP-PPMINGAAQGNLE 274 (286)
T ss_pred EcCCcccccCccCccCHHH------HHhhCCCCCCCCeEEEEECC-HHHHhHHHHHHHH
Confidence 988774 345554332 223232 2 368999999 899974 454444
No 88
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.79 E-value=4.1e-19 Score=177.47 Aligned_cols=180 Identities=18% Similarity=0.327 Sum_probs=144.0
Q ss_pred CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEEE
Q 005924 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (669)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImI 549 (669)
--|.||+||.|.+ .+.|-+-|++..-+........|.||+|+..|++| ++|.|++|.|.|... +..+|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 3589999999976 57888888876433323456789999999999999 899999999988765 457899999
Q ss_pred ecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCc------ccc
Q 005924 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK------EYV 623 (669)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k------~yV 623 (669)
++|.|.||+||-+-..+.... ..+++.+.||+|... +.+|+|+++++++..++|+.++|+|.+.++. +++
T Consensus 282 gGGAGmapmRSHIfDqL~rlh---SkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLH---SKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhc---ccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 999999999998877665332 468999999999998 9999999999999999999999999876632 334
Q ss_pred cchhHHhHHHHHhc-ccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 624 QHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 624 q~~l~~~~~~i~~l-l~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
...+.++. +.++ ..++..+|+||| +-|..+|.++|.+.
T Consensus 358 hnv~~en~--Lk~h~aPEDceyYmCGP-p~mNasvikmL~dl 396 (410)
T COG2871 358 HNVLYENY--LKDHEAPEDCEYYMCGP-PLMNASVIKMLKDL 396 (410)
T ss_pred HHHHHhhh--hhcCCCchheeEEeeCc-chhhHHHHHHHHhc
Confidence 44443321 2121 134789999999 88999999988764
No 89
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.78 E-value=7.2e-19 Score=215.87 Aligned_cols=186 Identities=16% Similarity=0.261 Sum_probs=140.9
Q ss_pred CChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
..+|||+.+..+ + ...|+|||+|.|.. .+.++|+|+. ..|.+|+||+++++| +.|.|.+|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~G------d~v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPG------DSVEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCC------CEEEEeCC
Confidence 578999998743 1 23599999999964 5788888862 159999999999999 89999885
Q ss_pred CC----------CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHh
Q 005924 533 PS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (669)
Q Consensus 533 ~g----------~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~ 602 (669)
.| .|.++.+..+|+||||+|||||||++++++.+.. .......+++||||+|+.+ |.+|++||++|.+
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~-~~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKK-PYVDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhC-cccCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 44 4666655668999999999999999999987641 0001246899999999998 9999999999988
Q ss_pred cCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 603 ~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
... .++++.++||+++ ..++|++.+.+. .......+..+|+||| ++|++.+.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 644 5789999998644 245666543222 1111123568999999 89999999998763
No 90
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.8e-18 Score=179.24 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=127.6
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEEeCCCcccCCCCCCCEE
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piI 547 (669)
+.|.+||||++... .+++++|+. .|..|.-|++ +++| +++.+.+|+|.|......++ -|
T Consensus 260 ~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdGPYG~F~~~~g~~~-QV 319 (438)
T COG4097 260 MRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDGPYGKFDFERGLNT-QV 319 (438)
T ss_pred CCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEecCcceeecccCCcc-cE
Confidence 46899999999854 478888874 4999999998 9999 89999999999988654333 89
Q ss_pred EEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCccccc-ch
Q 005924 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ-HK 626 (669)
Q Consensus 548 mIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq-~~ 626 (669)
+||+|+|||||+|+++..... ....+++|||.|||.+ +-+|.+||++++++.+++.++..- .+.++|+. +.
T Consensus 320 WIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiD---Ss~~g~l~~e~ 391 (438)
T COG4097 320 WIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIID---SSKDGYLDQED 391 (438)
T ss_pred EEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEec---CCCCCccCHHH
Confidence 999999999999999987752 2568999999999998 999999999999988887788733 33456663 22
Q ss_pred hHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 627 MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 627 l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++.+.+ ....-.||.||| .+|++.+++.|++
T Consensus 392 ler~~~-----~~~~~sv~fCGP-~~m~dsL~r~l~~ 422 (438)
T COG4097 392 LERYPD-----RPRTRSVFFCGP-IKMMDSLRRDLKK 422 (438)
T ss_pred hhcccc-----ccCcceEEEEcC-HHHHHHHHHHHHH
Confidence 222110 011238999999 8999999998875
No 91
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.73 E-value=1.6e-17 Score=196.84 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=132.3
Q ss_pred CChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEE-EEEEeC
Q 005924 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~~ 533 (669)
..+|||+.+.++. ..+|+|||+|.+.. .+.++|+|+++ |..|++|+++++| +.+ .|.+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~G------d~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEG------DYITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCC------CEeCeEeCCC
Confidence 4689999987453 34689999999854 57899999753 8899999999999 899 799999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|.++.. .++++|||+|+||||+++++++... . ..+++||||+|+.+ |++|.+||+++... ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~---~---~~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA---A---GNRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHH---C---CCeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 98876533 4799999999999999999998765 2 25899999999998 99999999988652 2222
Q ss_pred ecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+.++. .+++|++.+.+... ...+...||+||| ++|++.+.+.+.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVIK----RETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred ECCCCCCCcccHHHHHHHHhh----cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 34432 45778776544321 1112357999999 8999999998864
No 92
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.73 E-value=8.3e-18 Score=171.99 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=120.5
Q ss_pred ChHHHHHHhcCC----------------------CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh
Q 005924 457 PIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (669)
Q Consensus 457 p~~~li~~~~p~----------------------l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~ 514 (669)
.+|||+.+.+|. ...|.|||+|.+.. .+.++|.|++.. ..|.+|+||++
T Consensus 28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~~ 98 (235)
T cd06193 28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAAS 98 (235)
T ss_pred CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHhh
Confidence 578888886443 34699999998753 578999887431 13899999999
Q ss_pred cCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccH
Q 005924 515 AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYE 594 (669)
Q Consensus 515 l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~ 594 (669)
+++| +.|.+.+|.|.|.++. ..++++|||+||||||+++++++... ..+++++||+|+.+ |.++.
T Consensus 99 l~~G------d~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~-------~~~~~~~~~~~~~~-d~~~l 163 (235)
T cd06193 99 AQPG------DTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA-------DARGTALIEVPDAA-DEQPL 163 (235)
T ss_pred CCCC------CEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC-------CCeEEEEEEECCHH-Hcccc
Confidence 9999 8999999999998864 35799999999999999999987542 26899999999986 55444
Q ss_pred HHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 595 DELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 595 del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++. .++++.+.+++.. ..... .. .........++..+|+||| ++|++.+++.|.+
T Consensus 164 ~~~~-------~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 164 PAPA-------GVEVTWLHRGGAE-AGELA-LL---AVRALAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred CCCC-------CcEEEEEeCCCCC-cchhH-HH---HHhcccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 3321 3345554443322 11111 00 0001111223579999999 8999999999865
No 93
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.72 E-value=1.8e-17 Score=166.09 Aligned_cols=169 Identities=21% Similarity=0.253 Sum_probs=121.2
Q ss_pred CCChHHHHHHhcCCC----CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~l----~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 530 (669)
...+||++.+..|.. +.|+|||+|++....+.++|+|+.. .|..|+++.++........+..+.|.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 456888888875654 7899999999864347899999743 38888888887620000112789999
Q ss_pred EeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcc-cccHHHHHhhHhcCCccEE
Q 005924 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNNFEEEGVISEL 609 (669)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d-~ly~del~~~~~~g~~~~l 609 (669)
+|.|.|..+.....++||||+||||||+++++++......+.....++.|+|++|+.+ | ..|+++|.+..+.....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 9999887444456799999999999999999999876321111357899999999988 6 5799999751111111023
Q ss_pred EEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 610 ILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 610 ~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
.+.+++ +|+||| .+|.++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333333 999999 7899999887653
No 94
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.70 E-value=4.1e-17 Score=173.66 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=145.6
Q ss_pred chHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhheeeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----C
Q 005924 8 DLVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----G 82 (669)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 82 (669)
...++|..+++++. .+++.||||+ ||. +||++.. +++++|.+ .
T Consensus 198 p~~~~v~~~l~~~~----~l~i~~IaP~-HG~-------i~~~~~~--------------------~i~~~Y~~W~~~~~ 245 (388)
T COG0426 198 PNARLVLWALKKIK----LLKIEMIAPS-HGP-------IWRGNPK--------------------EIVEAYRDWAEGQP 245 (388)
T ss_pred ccHHHHHHHHhhhc----ccCccEEEcC-CCc-------eeeCCHH--------------------HHHHHHHHHHccCC
Confidence 34578999999988 4799999999 999 9998775 55665554 2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
..+|.|+|.|++|+|+.+|++|+++|.+. |+.+.++++.+.+.++ +.+++.+++.++++|||+ ++++++.++.++
T Consensus 246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~--gv~v~~~~~~~~~~~e--I~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l 320 (388)
T COG0426 246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKE--GVDVEVINLEDADPSE--IVEEILDAKGLVVGSPTI-NGGAHPPIQTAL 320 (388)
T ss_pred cceEEEEEecccCCHHHHHHHHHHHhhhc--CCceEEEEcccCCHHH--HHHHHhhcceEEEecCcc-cCCCCchHHHHH
Confidence 34799999999999999999999999988 9999999999888777 889999999999999999 555566677799
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTA 230 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~ 230 (669)
-.+.... .+++.++||| +|+|-+.+.+.+.++|+.+|.+...+-.+.-.. ..+++++.
T Consensus 321 ~~v~~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~-P~~~~l~~ 378 (388)
T COG0426 321 GYVLALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFR-PTEEDLKK 378 (388)
T ss_pred HHHHhcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccceEEEec-CCHHHHHH
Confidence 8888766 6789999999 999999999999999999999887664333221 34455443
No 95
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.69 E-value=5.7e-17 Score=145.10 Aligned_cols=104 Identities=23% Similarity=0.439 Sum_probs=82.2
Q ss_pred EEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCc-cEEEEEEecCCC----Cccc
Q 005924 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 622 (669)
Q Consensus 548 mIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~-~~l~~afSR~~~----~k~y 622 (669)
|||+|||||||+++++++... ...++++||||+|+.+ |++|+++|+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 799999999999999998863 2678999999999999 99999999999987655 334433 44333 3678
Q ss_pred ccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHH
Q 005924 623 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 659 (669)
Q Consensus 623 Vq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~ 659 (669)
|++.+.++... .....++..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988665433 233456889999999 899999874
No 96
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.69 E-value=2.1e-16 Score=189.49 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=130.5
Q ss_pred CChHHHHHHhcC-CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEE-EEEeC
Q 005924 456 PPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p-~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~-v~~~~ 533 (669)
..+|||+.+..+ ....|+|||+|.+.. .+.++|+|+.+ |..|.+|.++++| +.+. |.+|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~G------d~l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIG------DAFSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCc------CEEeeeecCC
Confidence 468999988732 234599999998754 57899998743 8889999999999 8894 99999
Q ss_pred CCcc-cCC-CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHH---HhhHhc-CCcc
Q 005924 534 SNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL---NNFEEE-GVIS 607 (669)
Q Consensus 534 g~F~-lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del---~~~~~~-g~~~ 607 (669)
|+|. ++. ...++++|||+|+||||+++++++... . ..+++|+||+|+++ |.+|.+++ ++|++. +..+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~---~---g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR---L---GNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH---C---CCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 9764 443 234799999999999999999998764 2 25899999999987 88887764 556554 3344
Q ss_pred EEEEEEecCCC--CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHH
Q 005924 608 ELILAFSREGS--QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 608 ~l~~afSR~~~--~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++++ +.++. .+++|++.+.+........-. +...||+||| ++|++.|.+.|.+
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~ 868 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKP 868 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHH
Confidence 45544 44432 457888766543221100000 1357999999 8999999998864
No 97
>PRK05569 flavodoxin; Provisional
Probab=99.67 E-value=1.1e-15 Score=143.93 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=99.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-~~a~~F 161 (669)
|++++|+|+|+||||+.+|+.|++++.+. |++++++++.+.+..+ +.+++.|+|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEA--GAEVTIKHVADAKVED------VLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhC--CCeEEEEECCcCCHHH------HhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 46899999999999999999999999877 7889999998887766 88999999999999888764 789999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHH-HHHHHHHHHHHHHcCCeEEecc
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
++.+.... ++|+++++|| +|+|. +.+.+.+.+.|++.|++.+.++
T Consensus 73 ~~~l~~~~-----~~~K~v~~f~----t~g~~~~~~~~~~~~~l~~~g~~~~~~~ 118 (141)
T PRK05569 73 LDQFKLTP-----NENKKCILFG----SYGWDNGEFMKLWKDRMKDYGFNVIGDL 118 (141)
T ss_pred HHHhhccC-----cCCCEEEEEe----CCCCCCCcHHHHHHHHHHHCCCeEeeeE
Confidence 99987543 6899999999 56554 5677889999999999987653
No 98
>PRK05568 flavodoxin; Provisional
Probab=99.66 E-value=9.4e-16 Score=144.38 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-~~a~~F 161 (669)
|++++|+|.|+||||+++|+.|++.+.+. |++++++++.+.+..+ +.+++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKEN--GAEVKLLNVSEASVDD------VKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEECCCCCHHH------HHhCCEEEEECCccCcccccchhHHHH
Confidence 46899999999999999999999999877 8889999999887666 88999999999999888864 789999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHH-HHHHHHHHHHHHHcCCeEEeccee
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPLGL 217 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~~g~ 217 (669)
++.+... ++++++++|| +|+|. +.+.+.+.+.|+++|++.+.+...
T Consensus 73 ~~~~~~~------~~~k~~~~f~----t~G~~~~~~~~~~~~~l~~~g~~~~~~~~~ 119 (142)
T PRK05568 73 VESISSL------VKGKKLVLFG----SYGWGDGEWMRDWVERMEGYGANLVNEGLI 119 (142)
T ss_pred HHHhhhh------hCCCEEEEEE----ccCCCCChHHHHHHHHHHHCCCEEeCCcEE
Confidence 9887542 6899999999 45553 456788999999999998876333
No 99
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.64 E-value=6.9e-16 Score=141.13 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=73.8
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~ 167 (669)
|+|+|+|||||+|++++ +..+..+.+++.+... + +++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~l---------g~~~~~i~~~~~d~~~------~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKL---------GFQHIRIPVDETDDIH------V-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHc---------CCCcEEeecCCcchhh------c-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 78999999999995443 3334445565544433 4 5667766 9999999999999999888643
Q ss_pred CCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHH
Q 005924 168 GNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 206 (669)
Q Consensus 168 ~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~ 206 (669)
+.++|||+||+.| ++||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999999866
No 100
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.62 E-value=2.1e-15 Score=182.45 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=126.9
Q ss_pred CChHHHHHHhcC-CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhh-hhcCCCCCCCCccEE-EEEEe
Q 005924 456 PPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p-~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v-~v~~~ 532 (669)
..+|||+.+..+ ...+|+|||++.+.. .+.++|.|++ .|..|.|| .++++| +.+ .+.+|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeecC
Confidence 468999998743 334699999998744 5678888874 38999998 479999 788 79999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|.|..... .+++||||+|+||||+++++++... .| .+++++||+|+.+ +.+|.+||+.+... ++++
T Consensus 90 lG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~---~g---~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~ 156 (1006)
T PRK12775 90 LGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKE---AG---ARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC 156 (1006)
T ss_pred CCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHh---CC---CcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE
Confidence 997654332 4689999999999999999997654 22 5699999999988 99999999887542 3332
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+.+++ .+++|++.+.+... + .....+|+||| .+|++.|.+.+.+
T Consensus 157 -tddgs~G~~G~vt~~l~~~l~---~--~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVCE---K--DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHhc---c--CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33433 45677776544211 0 12358999999 8999999988754
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.47 E-value=7.4e-13 Score=123.15 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=89.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCC----CCCChhHHH
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD----GEPTDNAAR 160 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~----G~~p~~a~~ 160 (669)
.+.|+|.|.||||+++|++|... ...+++++. +. +..++.+++++||||+ |+.|+...+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~---------~~~i~i~~~--~~------~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP---------ATRIPINER--ER------LEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc---------ceEEecCCC--cc------ccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 47999999999999998888543 123455432 12 4566789999999999 699999999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWP 237 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~ 237 (669)
|++...+ ....++|||+||+.| ++||.+++.+.+++. ...+. ..+-+. ...+.+.+|.+++|.
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~---k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLY---RFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEE---EEecCCCHHHHHHHHHHHHHHHh
Confidence 9877433 246899999999999 889999999999875 22222 222221 234556778877765
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.47 E-value=8.3e-13 Score=125.01 Aligned_cols=136 Identities=15% Similarity=0.265 Sum_probs=89.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecC-CCCCCChhHHH-
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATY-GDGEPTDNAAR- 160 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy-G~G~~p~~a~~- 160 (669)
|+++.|+|.|+||||++||++|...+.+...+..+..+++.++..++. ..+......|+++||| |.|.+|+++..
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 457899999999999999999998775421012233456555532110 0145667899999999 88866654322
Q ss_pred -----HHHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHH
Q 005924 161 -----FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (669)
Q Consensus 161 -----F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~ 233 (669)
..++|.... .++..++|||+||+.| +.||.+|+.++++ .+.-.+...- -.+..+|.+.-.+
T Consensus 78 ~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~fE----l~GT~~Dv~~v~~ 144 (154)
T PRK02551 78 ILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLADFE----LRGTPSDIERIAA 144 (154)
T ss_pred cchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEEee----ccCCHHHHHHHHH
Confidence 223332222 4578899999999999 8999999999986 5665555432 2245555554443
No 103
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.44 E-value=5.8e-13 Score=154.14 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=124.6
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCC----CCCCCCccE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP----LEGNGDCSW 526 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~----g~~~~~~~~ 526 (669)
+..+||++.+..|. .+.|+|||+|+|...++.++++|++. |-.|+.|.+ +.. |.....+..
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 44678888776564 46899999998865567888888742 334555544 332 211112247
Q ss_pred EEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhH----
Q 005924 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE---- 601 (669)
Q Consensus 527 v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~---- 601 (669)
+.|.+|.|.|.++....++++|||+|+|||||++++++.....+.. ....++.|+|++|+.+ |..|.+++....
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 8999999988766544579999999999999999999987522111 1246899999999999 999999986321
Q ss_pred hcCCccEEEEEEecCCCCcccccchhHHh--HHHHHhcccCCCEEEEeCCch
Q 005924 602 EEGVISELILAFSREGSQKEYVQHKMMDK--AAQLWSLLSKEGYLYVCGDAK 651 (669)
Q Consensus 602 ~~g~~~~l~~afSR~~~~k~yVq~~l~~~--~~~i~~ll~~~~~iYvCG~a~ 651 (669)
.+....+++...+|+......+++.+... .+.++ +-.+...+.+||+..
T Consensus 486 ~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 486 SNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLES 536 (722)
T ss_pred HHhcCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCc
Confidence 12234577778899876554555555442 12232 223457899999953
No 104
>PRK06242 flavodoxin; Provisional
Probab=99.43 E-value=7.9e-13 Score=125.59 Aligned_cols=108 Identities=21% Similarity=0.260 Sum_probs=88.2
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 84 TKVTVFYGTQ-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 84 ~~v~I~YgSq-tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|+++|+|.|+ ||||+.+|+.|++.+. ++++++.+....+ +.+++.|||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~~~------~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNPED------LSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCccc------HhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 7999999999999883 4567777665555 78999999999999 788899999998
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
+.+.. ++++++++||.+...... ..+.+.+.|+++|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEE
Confidence 87743 578999999965443322 37899999999999998764
No 105
>PLN02631 ferric-chelate reductase
Probab=99.43 E-value=4.2e-13 Score=154.57 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=111.9
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~ 530 (669)
+..+||++.+..|. .+.|+|||+|+|...++.++++|+. .|..|++|.+ ++.++ +...|.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEEEE
Confidence 44678877765454 4789999999986546789999873 4888999977 54321 11467888
Q ss_pred EeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhh------Hhc
Q 005924 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------EEE 603 (669)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~------~~~ 603 (669)
+|.|.|..+.....++||||+|+||||+++++++......++ ...+++.|+||+|+.+ |.+|.||++.+ .+
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~- 477 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS- 477 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-
Confidence 999977766555578999999999999999999987642221 1235899999999998 99999999863 22
Q ss_pred CCccEEEEEEecCCCC
Q 005924 604 GVISELILAFSREGSQ 619 (669)
Q Consensus 604 g~~~~l~~afSR~~~~ 619 (669)
..+.++...+||+++.
T Consensus 478 ~~ni~i~iyVTR~~~~ 493 (699)
T PLN02631 478 RLNLRIEAYITREDKK 493 (699)
T ss_pred cCceEEEEEEcCCCCC
Confidence 3466788889998653
No 106
>PLN02292 ferric-chelate reductase
Probab=99.40 E-value=2.1e-12 Score=149.19 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=120.2
Q ss_pred CChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~ 531 (669)
..+||++-+..|. .+.|+|||+|+|...++.++++|+. .|..|++|.+ ++.|+ .....+|.+.+
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~VeG 419 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSVEG 419 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEEEC
Confidence 3567665554353 4789999999985446789998873 3778888887 45552 11123678999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhH------hcC
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE------EEG 604 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~------~~g 604 (669)
|.|.+..+.....+++|||+|+||||+++++++.......+ ....++.|+|++|+.+ |..+.|++.... .+.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~ 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc
Confidence 99977644444479999999999999999999887532111 1236899999999998 998887654322 123
Q ss_pred CccEEEEEEecCCCCc-ccccchhHHhHHHHHhcc-----cCCCEEEEeCCch
Q 005924 605 VISELILAFSREGSQK-EYVQHKMMDKAAQLWSLL-----SKEGYLYVCGDAK 651 (669)
Q Consensus 605 ~~~~l~~afSR~~~~k-~yVq~~l~~~~~~i~~ll-----~~~~~iYvCG~a~ 651 (669)
...++...++|+.+.+ .|-++ ..+.+.+.+ .+...+.+|||..
T Consensus 499 ~~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 499 IDIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNS 547 (702)
T ss_pred CCceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCc
Confidence 3556777788876533 22232 222232322 2457899999943
No 107
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.32 E-value=2.3e-11 Score=121.52 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=97.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeeEEecCCCCCccch--------------hHHhhhccCCeEEEEEe
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE--------------QYEEKLKKETLAFFMVA 147 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~~~v~dl~~~~~~~~--------------~~~~~l~~~~~vi~~~s 147 (669)
|++|+|+|+|++|||+++|+.+++.+.+ . |++++++++.+..+.+. .-.+++.+++.|||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~--G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVA--GAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcC--CcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999987 6 89999999865332210 00456888999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
|| .|.+|..++.|++++...... ..+.+|.+++|+.+.+.++---...+.+...|..+|+..+.+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAK-GALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred cc-CCCchHHHHHHHHHhcccccc-CCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 99 999999999999998653211 238899999999644333223344566666778899987653
No 108
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.31 E-value=3.2e-11 Score=120.15 Aligned_cols=128 Identities=19% Similarity=0.079 Sum_probs=96.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccch------------hH--HhhhccCCeEEEEEecC
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE------------QY--EEKLKKETLAFFMVATY 149 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~------------~~--~~~l~~~~~vi~~~sTy 149 (669)
.+|+|+|+|+||||+++|+.+++.+.+. +|++++++++.+...++. .+ ..++.+++.|||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~-~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREV-DGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhc-CCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 3699999999999999999999999752 278899998866433210 00 14477899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
.|.+++.++.|++++...... ..+.+|.+++|+.+...++-...+...+...|..+|+..+..
T Consensus 80 -~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWAS-GALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred -ccCccHHHHHHHHhccccccc-cccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 899999999999998654211 238899999999654444444455566777778899987653
No 109
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.27 E-value=4.2e-11 Score=117.25 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=76.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|.||||+++|++|++.|.. |..++++++++.+..+ +.+++.|||++||| .|.+++.+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~---g~~v~~~~~~~~~~~~------l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE---GIQCDVVNLHRIEEPD------LSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC---CCeEEEEEhhhcCccC------HHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999973 5778899998877666 88899999999999 8889999999987
Q ss_pred HHhcCCCCCCCCCCceEEEEEec
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLG 186 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlG 186 (669)
..... |+++++++|++|
T Consensus 71 ~~~~~------l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHATQ------LNQMPSAFFSVN 87 (177)
T ss_pred HHHHH------hCCCeEEEEEec
Confidence 65432 889999999998
No 110
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.21 E-value=4.9e-12 Score=126.32 Aligned_cols=175 Identities=20% Similarity=0.287 Sum_probs=109.7
Q ss_pred CCChHHHHHHh--cCCC---CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEE
Q 005924 455 TPPIGVFFAAV--APHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 528 (669)
Q Consensus 455 ~~p~~~li~~~--~p~l---~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~ 528 (669)
...+||++.+. .|++ .-|.||.|+....-.+.++|.|+.+ ..|+.|+|+++ ++.| +.|.
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVG------D~v~ 244 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVG------DIVG 244 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhcccccc------ceee
Confidence 34678887764 1333 2455666555544468888888844 36999999998 8998 8999
Q ss_pred EEEeCCCcccCC---CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc-C
Q 005924 529 IFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-G 604 (669)
Q Consensus 529 v~~~~g~F~lp~---~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~-g 604 (669)
++.|.|+|.... +.++|+++.++|+||+|+++++++.+. .|..| .+...++++..+ .
T Consensus 245 ~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~R------P~~~~~~~~~~K~k 305 (385)
T KOG3378|consen 245 VSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSR------PFKQWLEQLKLKYK 305 (385)
T ss_pred ccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCC------cHHHHHHHHHHHHH
Confidence 999999997653 456999999999999999999988663 12222 222222222211 0
Q ss_pred CccEEEEEEecCCC--CcccccchhHH--hHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 605 VISELILAFSREGS--QKEYVQHKMMD--KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 605 ~~~~l~~afSR~~~--~k~yVq~~l~~--~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.+.++.--||.+.+ ++.-|...+.. +.+.+.++-...++||.||| .+.++.|..-|.++
T Consensus 306 ~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L 368 (385)
T KOG3378|consen 306 ENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKL 368 (385)
T ss_pred HHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHh
Confidence 11111112233322 22223322222 23333333334789999999 78999999988765
No 111
>PRK07116 flavodoxin; Provisional
Probab=99.10 E-value=7.1e-10 Score=106.78 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=86.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----------------------hhHHhhhccC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------------------EQYEEKLKKE 139 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----------------------~~~~~~l~~~ 139 (669)
||+++|+|.|.||||+.+|+.|++.+... . .++.+...|+..+ .....++.++
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d--~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGAD--L--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCC--e--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 67899999999999999999999999632 1 2333333222100 0012346788
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEecceee
Q 005924 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (669)
Q Consensus 140 ~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (669)
+.|+|++|+| .|.+|..+..|++.+ . ++++++++|+. |.+.+ +.+...+.+.+.. ..+.+-...
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~---~~~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPD---ANWKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCc---CccccCeee
Confidence 9999999999 588888888887653 2 78999999997 55554 4445555555432 222221111
Q ss_pred cCCCCcHHHHHHHHHHH
Q 005924 219 DDDQCIEDDFTAWRELV 235 (669)
Q Consensus 219 D~~~~~e~~f~~W~~~l 235 (669)
+ .+..+.++++|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 2 223467899998764
No 112
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.03 E-value=2.3e-09 Score=101.26 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=69.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC--CccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~--~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
+|+|.|.||||+++|+.|++.|.+. +..+|+.+. +..+ +.+++.|||++|+| .|.++..+.+|++.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~-----~~~v~~~~~~~~~~~------~~~yD~vi~gspiy-~g~~~~~~~~fi~~ 68 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEE-----GELVDLEKVEEDEPD------LSDYDAVIFGSPIY-AGRIPGEMREFIKK 68 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhh-----ccEEEHHhhhhcccc------cccCCEEEEEEEEE-CCcCCHHHHHHHHH
Confidence 5899999999999999999999876 445566654 2334 88999999999999 79999999999988
Q ss_pred HhcCCCCCCCCCCceEEEEEecCc
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNR 188 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds 188 (669)
+... ++++++++|.+|-.
T Consensus 69 ~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 69 NKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred HHHH------HcCCcEEEEEEeCC
Confidence 7543 78899999998744
No 113
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.90 E-value=5.2e-09 Score=95.37 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCC----CChhHHHHHH
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE----PTDNAARFYK 163 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~----~p~~a~~F~~ 163 (669)
|+|.|.||||++|+++|...+.. .-+.+.+.+.. +.-.+..|+++||||.|+ .|....+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~-------~~i~~~~~~~~-------~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA-------IRIPIREISPD-------LEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE-------EEE-SSCTTST-------S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchh-------ccccccccccc-------ccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 79999999999999998765431 11222222211 334567999999999999 9999998888
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
+-.+. ..-.+|+|.||+.| ..||.+|+.+.+++ +.-.++.. +-.+.++|.+.-
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 65442 35679999999999 78999999998865 55444433 222455665543
No 114
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.85 E-value=3.9e-08 Score=93.44 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCC---------------ccchhHHhhhccCCeEEEEE
Q 005924 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------MDDEQYEEKLKKETLAFFMV 146 (669)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~---------------~~~~~~~~~l~~~~~vi~~~ 146 (669)
|||+|++||.. |+|+.+|+.+++.+.+. |++++++++.++. .+-.++.+.+.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 99999999999999988 8999999999861 11134566788999999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 147 sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
|+| .|.+|.-++.|++++.. .....+++|.+++++.|.+..+. ..+...+...|..+|+..+..
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCC
Confidence 999 99999999999999962 11123899999999988655432 335677777888899987755
No 115
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.79 E-value=5.5e-08 Score=88.60 Aligned_cols=127 Identities=19% Similarity=0.307 Sum_probs=87.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCC----CCChhHHH
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDG----EPTDNAAR 160 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G----~~p~~a~~ 160 (669)
.+.|+|.|.||||.+|+++|. +. .+.+.+....+- +.-.+..|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~~----------~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREEDP----------IEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccCC----------ccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999999997 21 222333322221 23345789999999999 99998777
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 239 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L 239 (669)
|+.. .. ...+.-+|.|.||+.| ..||.+++.+.++ .|.-.++..-+.-- ..+-..+.+|..++|+..
T Consensus 66 FLn~---~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k---~~vPlLy~FEL~GT-~~Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 66 FLNN---EH-----NRALCRGVIASGNRNFGDNFALAGDVISAK---CGVPLLYRFELLGT-AEDVAAVRKGVTEFWKRA 133 (141)
T ss_pred Hhcc---cc-----chhheEEEEecCCccHHHHHHHHHHHHHHH---hCCCEEEEEeccCC-HHHHHHHHHHHHHHHHhC
Confidence 6543 22 3467789999999999 7899999999876 46655554432200 012355667888877653
No 116
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.75 E-value=5.3e-08 Score=93.53 Aligned_cols=94 Identities=28% Similarity=0.393 Sum_probs=72.5
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~ 166 (669)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.++++|++|+++| .|.+++.+++|++.
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~~-------~~~yD~i~lG~w~d-~G~~d~~~~~fl~~-- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPED-------LEDYDLIFLGFWID-KGTPDKDMKEFLKK-- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEeccccccC-------CCCCCEEEEEcCcc-CCCCCHHHHHHHHH--
Confidence 489999999999999999999852 356677765431 56789999999999 79999999988766
Q ss_pred cCCCCCCCCCCceEEEEEec----CcchHHHHHHHHHHHHHHHH
Q 005924 167 EGNDRGPWLQQLKFGVFGLG----NRQYEHFNKIGIVLDEELCK 206 (669)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlG----ds~Y~~f~~~~k~ld~~L~~ 206 (669)
|+++++++||.. ++ +|+..+.+.+.+.+.+
T Consensus 65 --------l~~KkV~lF~T~G~~~~s--~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 65 --------LKGKKVALFGTAGAGPDS--EYAKKILKNVEALLPK 98 (160)
T ss_pred --------ccCCeEEEEEecCCCCch--HHHHHHHHHHHHhhcc
Confidence 457899999972 22 4566666666665544
No 117
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.62 E-value=1e-07 Score=90.84 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=50.4
Q ss_pred CEEEEecCcccchHHHHHHHHHHHhh-cCCCCCCEEEEEeecCCCcccccHHHHHhhHhcC--CccEEEEEEecCCC
Q 005924 545 PIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG--VISELILAFSREGS 618 (669)
Q Consensus 545 piImIa~GTGIAPfrsflq~r~~~~~-~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g--~~~~l~~afSR~~~ 618 (669)
.++|||+|+||+|+.+++++.....+ ......++.|+|.+|+.+.=..|.++|+++.... ..+++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 58999999999999999999987654 2235689999999999884447786666554431 34567777776543
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.60 E-value=8.7e-08 Score=89.47 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=85.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|.+|+|.++|+.|+..|.++ |.+|++.|+.....-+ +.+++.||++.|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~--g~qvdi~dl~~~~~~~------l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRES--GIQVDIQDLHAVEEPA------LEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhc--CCeeeeeehhhhhccC------hhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 5799999999999999999999999998 8999999988765445 78999999999999 9998888888887
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchHHH---HHHHHHHHHHHHHc
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHF---NKIGIVLDEELCKQ 207 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f---~~~~k~ld~~L~~l 207 (669)
.-.+. |.++..|+|.++-. |..+ -..-..+++.|.+-
T Consensus 72 k~~e~------L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~ 111 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKS 111 (175)
T ss_pred HHHHH------HhcCCceEEEeehh-hcccccCchHHHHHHHHHhcC
Confidence 65443 78899999987632 2222 33334555556554
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.48 E-value=1.2e-06 Score=84.14 Aligned_cols=132 Identities=18% Similarity=0.237 Sum_probs=74.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---c------c--hh------------HHhhhccCCe
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---D------D--EQ------------YEEKLKKETL 141 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~---~------~--~~------------~~~~l~~~~~ 141 (669)
|++|+|-|.||||+.+|+.|++.+..- -.++.....|.. + . .+ ...++.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876321 122333333333 0 0 00 1123568899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEecceeecC
Q 005924 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (669)
Q Consensus 142 vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~ 220 (669)
|+++.|+| -|.+|.-+..|++.. . ++||+++.|-. |.+. ++.+.+.+.+.+. +++.. +-.....
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~---~-----~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~i~-~g~~~~~ 141 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY---D-----FSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GATIL-EGLAINR 141 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT---T-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE----EE---
T ss_pred EEEechHH-cCCCCHHHHHHHHhc---C-----CCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCEee-cCeEEeC
Confidence 99999999 899998888777543 2 88999999974 3332 3444555554432 44433 3222222
Q ss_pred CCCcHHHHHHHHHHH
Q 005924 221 DQCIEDDFTAWRELV 235 (669)
Q Consensus 221 ~~~~e~~f~~W~~~l 235 (669)
+.-.++++.+|.+++
T Consensus 142 ~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 142 GSVSEEEIKEWLKKI 156 (156)
T ss_dssp S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhC
Confidence 212678999999764
No 120
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.45 E-value=7e-06 Score=81.40 Aligned_cols=150 Identities=12% Similarity=0.131 Sum_probs=109.0
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----------hhHHhhhccCCeEEEEEecCC
Q 005924 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYG 150 (669)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG 150 (669)
|+|+++.||-. ++|..+++.+.+.+.+. |.+++++|+.+++..+ ..+.+.+.+.+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~--g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGL--GVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhC--CCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 57999999984 78999999999999987 8889988887665422 23446677889999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc-eeec-------CCC
Q 005924 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-GLGD-------DDQ 222 (669)
Q Consensus 151 ~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~-g~gD-------~~~ 222 (669)
.|..|.-.+.|++|+... .+++|.+++++.| ....+.-..--.+...|..+||..+... -..+ +..
T Consensus 78 ~~s~pg~LKn~iD~l~~~-----~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~~~~~~~~~~~~~~~d~~~ 151 (191)
T PRK10569 78 KASFSGALKTLLDLLPER-----ALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHQP 151 (191)
T ss_pred CCCCCHHHHHHHHhCChh-----hhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeecCceEEEechhhhcccccc
Confidence 999999999999999432 3899999999998 4555555444566677888999864321 1112 111
Q ss_pred CcHHHHHHHHHHHHHHHHhh
Q 005924 223 CIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 223 ~~e~~f~~W~~~l~~~L~~~ 242 (669)
..+++..+-.+.+...+.+.
T Consensus 152 ~~d~~~~~rl~~~~~~~~~~ 171 (191)
T PRK10569 152 QFTPNLQTRLDEALETFWQA 171 (191)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 23555656666555555543
No 121
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.38 E-value=1.1e-06 Score=104.30 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=74.2
Q ss_pred CHHHHHHhCCCC--CCChHHHHHHhcC-----CC-CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh
Q 005924 443 SLLEVMAEFPSA--TPPIGVFFAAVAP-----HL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (669)
Q Consensus 443 ~l~dvl~~fps~--~~p~~~li~~~~p-----~l-~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~ 514 (669)
++..+..+.|.. ..-+|||+.+..+ .+ .||++||++.... .+.++|+++++ |..|.+|++
T Consensus 804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~ 871 (1028)
T PRK06567 804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKT 871 (1028)
T ss_pred CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhc
Confidence 344444444532 3458999998743 12 6789999998654 57899999876 999999999
Q ss_pred cCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccch
Q 005924 515 AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAP 557 (669)
Q Consensus 515 l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAP 557 (669)
+++| +.+.+.+|.| .|.++. .+.+++||+|+|+||
T Consensus 872 l~~G------d~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 872 LSEN------EKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCCC------CEEEEEcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 9999 7899999999 788864 357999999999998
No 122
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.28 E-value=2.4e-05 Score=76.20 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=92.2
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----------hhHHhhhccCCeEEEEEecCCC
Q 005924 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYGD 151 (669)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG~ 151 (669)
+|+++.||- .++|.++++.+.+.+.+. +.+++++|+.++...+ ..+.+.+.+.+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~--~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQ--GVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 478999995 788999999999999876 7778888876644321 23445577889999999999 9
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 152 G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
|.+|...+.|++|+... .+.+|.+++++.| ..+.++...-..+...|..+|+..+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999998532 2889999988877 4555555443467788888999643
No 123
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=3.1e-06 Score=98.52 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCC-CC-CCCC----c
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP-LE-GNGD----C 524 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~-g~-~~~~----~ 524 (669)
+..+||++-+-.|. +|..+|||+|+| +++.+.+.|+.. |--|+-|.+ +.. .. .+.+ .
T Consensus 381 ~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~ 447 (646)
T KOG0039|consen 381 KYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPF 447 (646)
T ss_pred CCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccC
Confidence 33568876664464 689999999999 478999999853 666766666 321 11 0111 3
Q ss_pred cEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCC------------CCCCEEEEEeecCCCcccc
Q 005924 525 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDFI 592 (669)
Q Consensus 525 ~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~------------~~~~~~Lf~G~R~~~~d~l 592 (669)
-++.|.+|.|.=..+-..-.-++|||+|.|++||.+.+++.....+.+. ..+++..+|-||....=-.
T Consensus 448 ~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~w 527 (646)
T KOG0039|consen 448 PKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEW 527 (646)
T ss_pred ceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHH
Confidence 5788999988322221223457999999999999999999987544332 3467788888988773334
Q ss_pred cHHHHHhhH
Q 005924 593 YEDELNNFE 601 (669)
Q Consensus 593 y~del~~~~ 601 (669)
+.+.+.+..
T Consensus 528 f~~~l~~v~ 536 (646)
T KOG0039|consen 528 FKGLLTEVE 536 (646)
T ss_pred HHHHHHHHH
Confidence 455555544
No 124
>PRK00170 azoreductase; Reviewed
Probab=98.22 E-value=5.7e-05 Score=75.20 Aligned_cols=157 Identities=11% Similarity=-0.011 Sum_probs=105.7
Q ss_pred CCeEEEEEECC--C-chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc---------------------------chhH
Q 005924 83 KTKVTVFYGTQ--T-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (669)
Q Consensus 83 ~~~v~I~YgSq--t-Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~---------------------------~~~~ 132 (669)
|++|+|++||- . |+|..+|+.+.+.+++++++.+++++|+.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988766788888988654321 0123
Q ss_pred HhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC--------CCCCCCCCceEEEEEecCcch--HHHHHHHHHHHH
Q 005924 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (669)
Q Consensus 133 ~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~--------~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~ 202 (669)
.+++.+.+.|||++|.| .+.+|.-.+.|++++.... .....+++|++.++......+ .....+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 46678889999999999 9999999999999975311 011347899998888632222 112344566667
Q ss_pred HHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 203 ~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
.|.-+|++.+..+....-+ ...+.-++|.+.....+.+
T Consensus 160 ~~~~~G~~~~~~~~~~g~~-~~~~~~~~~~~~a~~~~~~ 197 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHN-YGPEKAAKIISAAKAAADE 197 (201)
T ss_pred HHHhcCCCceEEEEEeccc-CCchHHHHHHHHHHHHHHH
Confidence 7777898865444322211 1233345566555444443
No 125
>PRK06934 flavodoxin; Provisional
Probab=98.13 E-value=3e-05 Score=78.20 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=77.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc-------------------cchhHHhhhccCCeEEEEEe
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DDEQYEEKLKKETLAFFMVA 147 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~-------------------~~~~~~~~l~~~~~vi~~~s 147 (669)
+|.=|+.||||+.+|+.|++.+..- - .++...+.|.. +-.....++.+++.|+++.|
T Consensus 63 ~~~~~~~~GnTk~vAe~Ia~~~gaD--l--~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~P 138 (221)
T PRK06934 63 LQKNGEVLGSTQYVAQIIQEETGGD--L--FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYP 138 (221)
T ss_pred cccCCCCCCHHHHHHHHHHHHHCCC--E--EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcc
Confidence 3333444499999999999988522 1 22222222221 00112345778999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEeccee--ecCCC--
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGL--GDDDQ-- 222 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~--gD~~~-- 222 (669)
.| -|.+|.-...|++.. . ++||+++.|.. |-+. +....+.+.+.+. +++.+.+-.. +++..
T Consensus 139 IW-wg~~P~~V~tFLe~~---d-----~~GK~I~pF~T~ggsg---~g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~~ 204 (221)
T PRK06934 139 IW-WYKMPMVMYSFFEQH---D-----FSGKTLIPFTTHGGSR---FSDSLREIKRLQP--NAQLVTQGLAISRNDVTDD 204 (221)
T ss_pred hh-hccccHHHHHHHHhc---C-----CCCCEEEEEEecCCCC---ccchHHHHHHHcC--CcceeccceeeecCccccc
Confidence 99 888898888886554 2 88999999985 2222 3334444444322 4422322211 22221
Q ss_pred CcHHHHHHHHHHH
Q 005924 223 CIEDDFTAWRELV 235 (669)
Q Consensus 223 ~~e~~f~~W~~~l 235 (669)
..++++.+|.+.+
T Consensus 205 ~~~~~I~~Wl~~l 217 (221)
T PRK06934 205 DTPKEIINWLNTL 217 (221)
T ss_pred chHHHHHHHHHHc
Confidence 3578899998753
No 126
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.13 E-value=5e-05 Score=74.11 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=89.6
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC------------c-cchhHHhhhccCCeEEEEEecC
Q 005924 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA------------M-DDEQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~------------~-~~~~~~~~l~~~~~vi~~~sTy 149 (669)
||+++.||. .|+|..+|+.+.+.+.++. +.+++++|+.+++ . +-..+.+.+.+.+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~-g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARL-GISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 5899999999999886432 5778888876652 1 0123566788899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
+|.+|...+.|++|+... .+.+|++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~~-----~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDPN-----ALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCHh-----HhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 999999999999998532 38899999999875433 222233446667777887655
No 127
>PRK09739 hypothetical protein; Provisional
Probab=98.11 E-value=9.9e-05 Score=73.66 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=105.6
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---------------------cchhHHhhhccC
Q 005924 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DDEQYEEKLKKE 139 (669)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~---------------------~~~~~~~~l~~~ 139 (669)
|++|+|++||- .|+|..+++.+.+++.+. |.+++++|+.+.+. +-..+.+++.+.
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQER--GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999987 477899999999999987 77888888765321 113466778899
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCC---CCCCCCCceEEEEEecCcchHHHHH------HHHHHH-HHHHHcCC
Q 005924 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGND---RGPWLQQLKFGVFGLGNRQYEHFNK------IGIVLD-EELCKQGG 209 (669)
Q Consensus 140 ~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~---~~~~l~~~~~avFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 209 (669)
+.+||++|.| .+.+|.-.+.|++.+..... .+..|.+++..++......|.+|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 99999999999998743110 0124788888887764344444422 222333 33344676
Q ss_pred eEEecceeecCC-----CCcHHHHHHHHHHHHHHHHhh
Q 005924 210 ARLVPLGLGDDD-----QCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 210 ~~i~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 242 (669)
+.+.....+.-. +...+..++|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654222222211 345678899998877666543
No 128
>PRK01355 azoreductase; Reviewed
Probab=98.11 E-value=0.00013 Score=72.89 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=108.4
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc----------------c-hhHHhhhccCCe
Q 005924 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------D-EQYEEKLKKETL 141 (669)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~----------------~-~~~~~~l~~~~~ 141 (669)
|++|+|+.||-. |+|..+|+.+.+++.+..++.+++++|+.+.+.. + ..+.+.+.+.+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987534678888888665431 1 235566788899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCC--------CC---CCCCCCceEEEEEecCcc--hHHHHHHHHHHHHHHHHcC
Q 005924 142 AFFMVATYGDGEPTDNAARFYKWFTEGN--------DR---GPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEELCKQG 208 (669)
Q Consensus 142 vi~~~sTyG~G~~p~~a~~F~~~L~~~~--------~~---~~~l~~~~~avFGlGds~--Y~~f~~~~k~ld~~L~~lG 208 (669)
+||++|.| .+.+|.-.+.|++++.... .. ...++++++.++...... +..+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999975321 01 124788888776653322 1113445566777788899
Q ss_pred CeEEecceeecCCC-Cc-HHHHHHHHHHHHHHHHh
Q 005924 209 GARLVPLGLGDDDQ-CI-EDDFTAWRELVWPELDQ 241 (669)
Q Consensus 209 a~~i~~~g~gD~~~-~~-e~~f~~W~~~l~~~L~~ 241 (669)
++.+.......-.. .. -+....|.+.-.+.+.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98765554433221 11 12366777665555554
No 129
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.99 E-value=2.7e-06 Score=74.73 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
...+||++.+.++. ...|+|||+|.+.. .+.++|+|+.. ..|..|+||+++++| +.|.+.+
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~G------d~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPG------DEVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTT------SEEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCC------CEEEEEE
Confidence 34789998887562 34699999999964 67899999854 369999999999999 8999999
Q ss_pred eCCCcc
Q 005924 532 RPSNFK 537 (669)
Q Consensus 532 ~~g~F~ 537 (669)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 999985
No 130
>PRK13556 azoreductase; Provisional
Probab=97.95 E-value=0.00046 Score=69.34 Aligned_cols=157 Identities=9% Similarity=0.060 Sum_probs=107.0
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc-----------------------------cc
Q 005924 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------------------------DD 129 (669)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~-----------------------------~~ 129 (669)
|++|+|+.+|-. ++|..+++.+.+.+.+..++.+++++|+.+.+. .-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765578888888753211 00
Q ss_pred hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------CC--CCCCCCceEEEEEecCcch-----HHHHHH
Q 005924 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------DR--GPWLQQLKFGVFGLGNRQY-----EHFNKI 196 (669)
Q Consensus 130 ~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~------~~--~~~l~~~~~avFGlGds~Y-----~~f~~~ 196 (669)
+.+..++.+.+.|||++|-| ++.+|.-.+.+++++.... .. ...+++|++.++...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 23446677889999999999 9999999999999987531 11 1358899999987733345 334444
Q ss_pred HHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
...+...|.-+|++.+.. ...+......+..+.+.++....+.+
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~~ 203 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAAK 203 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHHH
Confidence 566777888899876543 33322222344455666555444443
No 131
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.93 E-value=0.00032 Score=69.82 Aligned_cols=152 Identities=17% Similarity=0.106 Sum_probs=108.6
Q ss_pred CeEEEEEECCCc---hHHHHHHHHHHHHHhhhCC-CeeEEecCCCC----------------------CccchhHHhhhc
Q 005924 84 TKVTVFYGTQTG---TAEGFAKALAEEIKARYEK-AAVKVVDLDDY----------------------AMDDEQYEEKLK 137 (669)
Q Consensus 84 ~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g-~~~~v~dl~~~----------------------~~~~~~~~~~l~ 137 (669)
|+|+|+++|-.+ ++..+++.+.+.+.++ + .++.+.||.+. +...+. ++++.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~--~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEA--GPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELL 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHH--TTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHc--CCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHH
Confidence 689999999987 5899999999999998 6 88999999874 111112 36678
Q ss_pred cCCeEEEEEecCCCCCCChhHHHHHHHHhc--CC--------CCCCCCCCceEEEEEe-cCcch--H-------HHHHHH
Q 005924 138 KETLAFFMVATYGDGEPTDNAARFYKWFTE--GN--------DRGPWLQQLKFGVFGL-GNRQY--E-------HFNKIG 197 (669)
Q Consensus 138 ~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~--~~--------~~~~~l~~~~~avFGl-Gds~Y--~-------~f~~~~ 197 (669)
+.+.|||+.|.| .+.+|.-.+.|++.+-. .. .....|+||++.++-. |...+ . .+..+.
T Consensus 78 ~AD~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~ 156 (199)
T PF02525_consen 78 WADHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLL 156 (199)
T ss_dssp HSSEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHH
T ss_pred HcCcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhH
Confidence 899999999999 88899999999998732 11 1124588999887764 54422 2 344555
Q ss_pred HHHHHHHHHcCCeEEecceeecCCC-CcHHHHHHHHHHHHHHH
Q 005924 198 IVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 198 k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~~f~~W~~~l~~~L 239 (669)
..+...++-+|++.+.....++-.. ..++..++|++++-+.|
T Consensus 157 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 157 PYLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 6677888889999987766554332 23788889988775543
No 132
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.89 E-value=9.2e-05 Score=74.39 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=89.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc-------------------c-chhHHhhhccCCeEEE
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------D-DEQYEEKLKKETLAFF 144 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~-------------------~-~~~~~~~l~~~~~vi~ 144 (669)
.|.+.|-| +|||+.+|+.+++.+++. |++++++.+.+.+. + -.++.+.+.+++.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~--G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEA--GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHc--CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45666667 899999999999999988 89998887765410 1 1235566788999999
Q ss_pred EEecCCCCCCChhHHHHHHH-HhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 145 MVATYGDGEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 145 ~~sTyG~G~~p~~a~~F~~~-L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
++||| .|..+..++.|++- ....-. ...+.++..++|..+.+.-..-......+...+...|...+
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 99999 99999999999998 433221 13488999999988765543222345556666667776555
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.44 E-value=0.0078 Score=60.88 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=91.6
Q ss_pred CCCeEEEEEECCCc--hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc---------hhHHhhhccCCeEEEEEecCC
Q 005924 82 GKTKVTVFYGTQTG--TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---------EQYEEKLKKETLAFFMVATYG 150 (669)
Q Consensus 82 ~~~~v~I~YgSqtG--tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~---------~~~~~~l~~~~~vi~~~sTyG 150 (669)
.+++|+++.||..- ++..+|+.+++.+.+. |++++++|+.+++.-+ ..+...+...+.+||++|-|
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY- 101 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER- 101 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-
Confidence 45789999998744 4578999999999876 7889999876543211 11334456789999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 151 ~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
+|..|...+++++|+.....+...+.+|.++|.|.+-... --.+...+...|..+|+..+-
T Consensus 102 n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 102 HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCcccc
Confidence 9999999999999997642111248899999988531111 223557777788889987653
No 134
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=97.07 E-value=0.04 Score=54.35 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=98.9
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC----CccchhHHhhhccCCeEEEEEecCCCCCCC
Q 005924 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY----AMDDEQYEEKLKKETLAFFMVATYGDGEPT 155 (669)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~----~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p 155 (669)
.+.+++++|++++-.......-+.+.+.+. . ..++.+.||.+. ..+-......|...+.|||..|.| ...+|
T Consensus 2 ~~~~~kiLiI~aHP~~~~S~~n~~l~~~~~-~--~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~P 77 (184)
T PRK04930 2 MSQPPKVLLLYAHPESQDSVANRVLLKPAQ-Q--LEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCP 77 (184)
T ss_pred CCCCCEEEEEECCCCcccCHHHHHHHHHHH-c--CCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCc
Confidence 346789999999998753323333333333 3 335777777543 122222445678899999999999 88888
Q ss_pred hhHHHHHHHHhcCC----CCCCCCCCceEEEEEe-cCcc--hHH--HHH-----HHHHHHHHHHHcCCeEEecceeecCC
Q 005924 156 DNAARFYKWFTEGN----DRGPWLQQLKFGVFGL-GNRQ--YEH--FNK-----IGIVLDEELCKQGGARLVPLGLGDDD 221 (669)
Q Consensus 156 ~~a~~F~~~L~~~~----~~~~~l~~~~~avFGl-Gds~--Y~~--f~~-----~~k~ld~~L~~lGa~~i~~~g~gD~~ 221 (669)
.-.+.+++..-... ..+..++||++.+.-. |... |.. ++. .-.-+...+.-.|.+.+-+....+..
T Consensus 78 a~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~ 157 (184)
T PRK04930 78 ALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWAR 157 (184)
T ss_pred HHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCC
Confidence 88998888754321 1123589999887644 4432 421 221 22222333445798887776666655
Q ss_pred CCcHHHHHHHHHHHHHHHHhh
Q 005924 222 QCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 222 ~~~e~~f~~W~~~l~~~L~~~ 242 (669)
...+++.++|.++....|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 158 RQSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCCHHHHHHHHHHHHHHHhhh
Confidence 556778888888776666653
No 135
>PRK13555 azoreductase; Provisional
Probab=97.05 E-value=0.044 Score=55.14 Aligned_cols=129 Identities=11% Similarity=0.120 Sum_probs=90.4
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc--------------------cc---------
Q 005924 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------DD--------- 129 (669)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~--------------------~~--------- 129 (669)
|++++++++|-. -.+..+|+.+.+++++..|+.++.+.||-+.+. ..
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 467888899999998775557888887754211 00
Q ss_pred hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------C--CCCCCCCceEEEEEecCcchH-----HHHHH
Q 005924 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQYE-----HFNKI 196 (669)
Q Consensus 130 ~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~------~--~~~~l~~~~~avFGlGds~Y~-----~f~~~ 196 (669)
+.+.+++...+.+||++|-| ++.+|.-.+.|++++.... . ....++||+..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 12445677889999999999 8889999999999986421 1 114589999999987333452 12223
Q ss_pred HHHHHHHHHHcCCeEE
Q 005924 197 GIVLDEELCKQGGARL 212 (669)
Q Consensus 197 ~k~ld~~L~~lGa~~i 212 (669)
...+...|.-+|.+.+
T Consensus 160 ~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 160 VNYVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHHHhcCCCce
Confidence 3566667777888643
No 136
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=96.42 E-value=0.012 Score=55.92 Aligned_cols=131 Identities=17% Similarity=0.114 Sum_probs=84.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-------------hhH--HhhhccCCeEEEEEe
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-------------EQY--EEKLKKETLAFFMVA 147 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-------------~~~--~~~l~~~~~vi~~~s 147 (669)
+.+|.|+|-|.+|.-..+|++..+.+... +| +..++.+.+.-.++ ..+ .++|.++|..+|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a-~g-eA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESA-GG-EATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhcc-CC-eeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35799999999999999999999998765 33 66666554331111 001 233667899999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceee
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (669)
|- -|.+|..++.||+--..+ -....|.||..++|=.+-+.=+-=...+..--..|.-.|. .+.|+|.-
T Consensus 79 TR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGm-ifVPlGYk 146 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGM-IFVPLGYK 146 (203)
T ss_pred cc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcce-EEEecccc
Confidence 99 999999999999862221 1112389999999976543221111112222234555564 45677644
No 137
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=95.88 E-value=0.087 Score=51.95 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=84.1
Q ss_pred CeEEEEEECCCc--hHHHHHHHHHHHHHhhhCC-CeeEEecCC----CC------Ccc-chhHHhhhccCCeEEEEEecC
Q 005924 84 TKVTVFYGTQTG--TAEGFAKALAEEIKARYEK-AAVKVVDLD----DY------AMD-DEQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 84 ~~v~I~YgSqtG--tte~~A~~la~~l~~~~~g-~~~~v~dl~----~~------~~~-~~~~~~~l~~~~~vi~~~sTy 149 (669)
+|+++++||..= .+..+|+.+++.+... + ..+..++++ +. .+. -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~--~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAG--GEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhccc--CceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc
Confidence 579999998764 4678889998888765 3 333332221 11 111 122345567889999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
+|..|.-.+..++|+.... +.+|.+++++.|-... +.-.+...+...|..+|+..+-.
T Consensus 79 -n~s~pg~lKnaiD~l~~~~-----~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 79 -NGSYPGALKNAIDWLSREA-----LGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred -CCCCCHHHHHHHHhCCHhH-----hCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 9999999999999997652 8899988888554443 22334566777778888876643
No 138
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.38 Score=49.87 Aligned_cols=157 Identities=21% Similarity=0.292 Sum_probs=98.9
Q ss_pred CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEE
Q 005924 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (669)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piI 547 (669)
+.-+|.|+|.+-... .+++.|-+.+-. ..|.+|.|-.+.++| +.+.|.+|.|.+..+.. ..-++
T Consensus 84 r~~~R~YTiR~~d~~-~~e~~vDfVlH~--------~~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDAA-AGELDVDFVLHG--------EGGPASRWARTAQPG------DTLTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeeccc-ccEEEEEEEEcC--------CCCcchhhHhhCCCC------CEEEEeCCCCCCCCCCC-cceEE
Confidence 346899999865422 355555554321 369999999999999 89999999998776654 45899
Q ss_pred EEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchh
Q 005924 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKM 627 (669)
Q Consensus 548 mIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l 627 (669)
|||==|++=-+.++|++.- ...+...|.-.+... |. +++. ....+ ++.- +.|.+.. +.| .+
T Consensus 148 LigDetAlPAIa~iLE~lp-------~~~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~W-l~r~~~~--~~~-ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLP-------ADTPAEAFLEVDDAA-DR---DELP---SPDDL-ELEW-LARDDAP--TEQ-LL 208 (265)
T ss_pred EeccccchHHHHHHHHhCC-------CCCceEEEEEeCChH-Hh---hccC---CCCce-eEEE-ecCCCcc--chH-HH
Confidence 9999999988888887643 223445666666655 44 2221 11222 2332 2343322 111 12
Q ss_pred HHhHHHHHhc-ccC-CCEEEEeCCchhhHHHHHHHHHH
Q 005924 628 MDKAAQLWSL-LSK-EGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 628 ~~~~~~i~~l-l~~-~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
.+ + +++. +.. +.+++|.|- ..|++.+++.|.+
T Consensus 209 ~~-a--~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L~~ 242 (265)
T COG2375 209 AA-A--LAQAALPAGDYYVWIAGE-ASAVKAIRKFLRN 242 (265)
T ss_pred HH-H--HhcccCCCCceEEEEecc-HHHHHHHHHHHhh
Confidence 11 1 2221 222 369999999 6799988888876
No 139
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=95.11 E-value=0.55 Score=45.99 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=92.1
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc----cchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
++|+++.-......+-+.|.+.+... + .+++.||.+..+ +-......+...+.|||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~--~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-E--GVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-C--CeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 78999988877666777777777643 2 366777644222 1122445577899999999999 88888888888
Q ss_pred HHHHhcCC----CCCCCCCCceE-EEEEecCc--chH-----HHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHH
Q 005924 162 YKWFTEGN----DRGPWLQQLKF-GVFGLGNR--QYE-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (669)
Q Consensus 162 ~~~L~~~~----~~~~~l~~~~~-avFGlGds--~Y~-----~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~ 229 (669)
++..-... ..+..|+||++ .++..|.. .|. .+.....-+...+.-+|++.+.+..........++++.
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87653311 11234889977 45555654 231 12223344555556689987766544332223345555
Q ss_pred HHHHHHHHHHHh
Q 005924 230 AWRELVWPELDQ 241 (669)
Q Consensus 230 ~W~~~l~~~L~~ 241 (669)
+..+...+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555544444443
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=92.75 E-value=2.5 Score=41.91 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=96.1
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeeEEe-----------cCCC--CCccchhHHhhhccCCeEEEEEecC
Q 005924 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVV-----------DLDD--YAMDDEQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~~~v~-----------dl~~--~~~~~~~~~~~l~~~~~vi~~~sTy 149 (669)
|+|+|+|+--- .-+...++...+.+.+. +.++... ...| ...+-..-.+.+...+.+||.-|.|
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~--~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw 78 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEA--GHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW 78 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHc--chHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch
Confidence 57999999885 44444444444555444 3332211 1223 3332223455677889999999999
Q ss_pred CCCCCChhHHHHHHHHhcCC----CCC----CCCCCceEEEEEecCcchHHHHHHHH---------HHHHHHHHcCCeEE
Q 005924 150 GDGEPTDNAARFYKWFTEGN----DRG----PWLQQLKFGVFGLGNRQYEHFNKIGI---------VLDEELCKQGGARL 212 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~----~~~----~~l~~~~~avFGlGds~Y~~f~~~~k---------~ld~~L~~lGa~~i 212 (669)
=+..|.-.+.+++..-... ..+ ..|+||++-++..-...=+.|...+. .+.-.+.-.|...+
T Consensus 79 -W~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 157 (189)
T COG2249 79 -WYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWL 157 (189)
T ss_pred -hccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccc
Confidence 8888888888888754321 111 56999999888874443233333222 22344556677666
Q ss_pred ecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 213 VPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 213 ~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
-+...+......++...+|.+.+-..|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 158 PPFTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred cceeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 555555554467899999998887777653
No 141
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.86 E-value=7.8 Score=36.30 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=79.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCC-CCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
++-.|+-++.-|-.-.+...+...+-+..| .+++++-. ...++ +.....+.+.=+++.|.. .+..-..+.++.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G---~eVi~LG~~vp~e~--i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAG---FEVINLGVMTSQEE--FIDAAIETDADAILVSSL-YGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCC---CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcCc-cccCHHHHHHHH
Confidence 344577788888888888887777765555 66677753 33333 666666666544444444 334446677788
Q ss_pred HHHhcCCCCCCCCCCceEEEEEe---cCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGL---GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~ 236 (669)
+.|++.. +.+.++.+=|. +++.+ ....++|+++|...+++.+ ...+++..|....|
T Consensus 76 ~~L~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~------~~~~~i~~~l~~~~ 134 (137)
T PRK02261 76 EKCIEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPG------TDPEEAIDDLKKDL 134 (137)
T ss_pred HHHHhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcC------CCHHHHHHHHHHHh
Confidence 8887653 44555444442 11222 4555789999988888754 24566777776544
No 142
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=87.25 E-value=0.25 Score=54.37 Aligned_cols=61 Identities=30% Similarity=0.537 Sum_probs=54.2
Q ss_pred EEEecCcch------HHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHhh
Q 005924 182 VFGLGNRQY------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 182 vFGlGds~Y------~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~ 242 (669)
|||+||+.| ..|++-.|.+..+|.+++|.....+|+|+|++ +....+..|--.||++|..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 689999988 25899999999999999999999999999887 67888999999999999763
No 143
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.69 E-value=13 Score=34.70 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=81.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCC-CCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L 165 (669)
+|+-|+--|..-.....+-..+-+..| .+++|+-- ..++ ++.+...+++.=+++.|+. .|.--..+.++.+.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~G---feVi~LG~~v~~e--~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAG---FNVVNLGVLSPQE--EFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKC 76 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHH
Confidence 456678888888888777666654444 66787753 3333 4777777888777777777 455556788888888
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHH
Q 005924 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (669)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~ 234 (669)
++.. +.++. .++| |.-..+.= -...+.++|+++|..++++.+. ..+++..|..+
T Consensus 77 ~~~g-----l~~~~-vivG-G~~vi~~~--d~~~~~~~l~~~Gv~~vF~pgt------~~~~iv~~l~~ 130 (134)
T TIGR01501 77 DEAG-----LEGIL-LYVG-GNLVVGKQ--DFPDVEKRFKEMGFDRVFAPGT------PPEVVIADLKK 130 (134)
T ss_pred HHCC-----CCCCE-EEec-CCcCcChh--hhHHHHHHHHHcCCCEEECcCC------CHHHHHHHHHH
Confidence 7754 55554 4555 43222100 0123456899999998887542 34667777654
No 144
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.91 E-value=15 Score=34.09 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=71.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCC-CCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~ 166 (669)
|+-|+.-|..-...+.|-..+-+..| .+++|+-- ...+ ++.+...+++.=+++.|+. .|.--..+.+..+.|+
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~G---feVidLG~~v~~e--~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAG---FNVVNLGVLSPQE--EFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCD 75 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHH
Confidence 56678888888888877776655545 67788753 3333 4777777777766666666 4444577888888887
Q ss_pred cCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecce
Q 005924 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (669)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (669)
+.. +.+.++ +.| |.-.-+ ..-...-.++|+++|..++++.|
T Consensus 76 ~~g-----l~~v~v-ivG-G~~~i~--~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 76 EAG-----LKDILL-YVG-GNLVVG--KQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred HCC-----CCCCeE-EEE-CCCCCC--hhhhHHHHHHHHHcCCCEEECcC
Confidence 754 544332 333 431110 00012334679999999988765
No 145
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=80.53 E-value=0.28 Score=43.62 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=3.6
Q ss_pred CHHHHHHhCCC--CCCChHHHHHHhcCCC-----CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhc
Q 005924 443 SLLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 515 (669)
Q Consensus 443 ~l~dvl~~fps--~~~p~~~li~~~~p~l-----~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l 515 (669)
++++|...-|. .+..+||++-+.+|.+ +.++|||+|+|. .+.+.++|+. .|-.|..|.+.
T Consensus 15 ~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~ 81 (105)
T PF08022_consen 15 DVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHH
Confidence 34444444444 4567899888765653 678999999996 5788888874 35666666664
Q ss_pred CCCC--CCCCccEEEEEEeCC
Q 005924 516 IPLE--GNGDCSWAPIFIRPS 534 (669)
Q Consensus 516 ~~g~--~~~~~~~v~v~~~~g 534 (669)
.... ......++.|.+|+|
T Consensus 82 ~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 82 LSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------TTSTTS
T ss_pred HhhhcccCCCceEEEEECCCC
Confidence 2210 011123555566665
No 146
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=75.54 E-value=2.7 Score=38.24 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCc
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 536 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F 536 (669)
...|.|||.+.... .+++.|-+.+- ...|.+|.|..+.++| +.|-|.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~H--------g~~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVLH--------GDEGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEEC--------CCCCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 46899999887533 35666655432 1139999999999999 899999998876
No 147
>PRK05907 hypothetical protein; Provisional
Probab=71.32 E-value=87 Score=33.54 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=72.4
Q ss_pred HHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhh-----ccC-CeEEEEEecC
Q 005924 76 EADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-----KKE-TLAFFMVATY 149 (669)
Q Consensus 76 ~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-----~~~-~~vi~~~sTy 149 (669)
...++.+. .++++||++. +...++|.+.+-.. + ...+|.++++.+. +++.. ..+ ++|++--+
T Consensus 11 ~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~--~--~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~-- 78 (311)
T PRK05907 11 SQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSG--R--KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA-- 78 (311)
T ss_pred HHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCC--c--cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc--
Confidence 33344444 8999999999 77777777766322 2 2446777777554 43332 233 44444222
Q ss_pred CCCCCC-hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHH
Q 005924 150 GDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF 228 (669)
Q Consensus 150 G~G~~p-~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f 228 (669)
+.+. .+...+.+++.+.. ......||.. .++|+.+.-|.+.+ |+. +-..++. ....+.++
T Consensus 79 --~~~~~~~~~~L~~Yl~np~------~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v~~~~e~--~~l~e~~L 139 (311)
T PRK05907 79 --EKMSSSTQEFLIRYARNPN------PHLTLFLFTT---KQECFSSLSKKLSS-----ALC-LSLFGEW--FADRDKRI 139 (311)
T ss_pred --cccccccHHHHHHHHhCCC------CCeEEEEEEe---cccHHHHHHHHHhh-----cce-ecccccc--CCCCHHHH
Confidence 2222 35677888887632 2234454654 26777765555542 322 2000111 12357899
Q ss_pred HHHHHHHHHH
Q 005924 229 TAWRELVWPE 238 (669)
Q Consensus 229 ~~W~~~l~~~ 238 (669)
.+|..+....
T Consensus 140 ~~Wi~~~~~~ 149 (311)
T PRK05907 140 AQLLIQRAKE 149 (311)
T ss_pred HHHHHHHHHH
Confidence 9999765544
No 148
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=70.46 E-value=3.5 Score=45.31 Aligned_cols=127 Identities=12% Similarity=-0.038 Sum_probs=84.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc-CCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
.-.-++|.=+=++|-+..+|+.|++.+.+.|= ++ ++ .-+++..-+..+.. +--+++.+-|.-.|.+.+..++
T Consensus 356 hcalslVgepi~yp~in~f~k~lH~k~issfl---vt--na--q~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkd 428 (601)
T KOG1160|consen 356 HCALSLVGEPIMYPEINPFAKLLHQKLISSFL---VT--NA--QFPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKD 428 (601)
T ss_pred hheeeeecccccchhhhHHHHHHHhccchHHh---cc--cc--cChHHHhchhhhheeEEEEeecchhhhcCCCCchHHH
Confidence 34557888889999999999999998866531 11 11 11111000111211 2345666667777889999999
Q ss_pred HHHHHhcCCCC---CCCCCCceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 161 FYKWFTEGNDR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 161 F~~~L~~~~~~---~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
||+|+.+.... +....--++.+.|.||+.- ..||.+++-+-.+++-+|++.+.+.
T Consensus 429 FwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges 488 (601)
T KOG1160|consen 429 FWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGES 488 (601)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEeccc
Confidence 99998653211 1123445788999888874 6799999999999999999887654
No 149
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=67.39 E-value=1.4e+02 Score=29.90 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCCeeEEecCCCCC---------------------ccc-------hh
Q 005924 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------------MDD-------EQ 131 (669)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g~~~~v~dl~~~~---------------------~~~-------~~ 131 (669)
|++|+++=+|-.| -+..+++++.+..++.+|+.++...||.+-. .++ +.
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 5678888888774 3577888888888888777777666653111 111 34
Q ss_pred HHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC--------CCCCCCCCceEEEEEecCcchHH----HHHHHHH
Q 005924 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQYEH----FNKIGIV 199 (669)
Q Consensus 132 ~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~--------~~~~~l~~~~~avFGlGds~Y~~----f~~~~k~ 199 (669)
+++++...+.+||+.|=| +-..|...+.+++.+.... .....+.+|++.+...=---|.+ ++.....
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 777788899999999999 8888999999998885421 11356888999988752224533 5667778
Q ss_pred HHHHHHHcCCeEE
Q 005924 200 LDEELCKQGGARL 212 (669)
Q Consensus 200 ld~~L~~lGa~~i 212 (669)
+...|.=+|.+-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 8888888888643
No 150
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=63.07 E-value=20 Score=30.36 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=28.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v 119 (669)
.+++++.++-.|++..++.+|.+.+.+. ++.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~--~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN--GIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEE
Confidence 3689999999999999999999999766 554433
No 151
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=61.31 E-value=30 Score=34.66 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=43.1
Q ss_pred eEEEEEECCCc----hHHHHHHHHHHHHHhhhCCCeeEEe-cCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005924 85 KVTVFYGTQTG----TAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 85 ~v~I~YgSqtG----tte~~A~~la~~l~~~~~g~~~~v~-dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
||+|++|+-.| ..+...+.|++.|.+. +++++.+. |.+.+..++ |..+++|||.... ++--.++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~-~~~~v~~~~~~~~~~~~~------L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES-EGFEVTVTEDPDDLTPEN------LKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT-TCEEEEECCSGGCTSHHC------HCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC-CCEEEEEEeCcccCChhH------hcCCCEEEEECCC-CCcCCHHHHH
Confidence 58888888333 2235666777777632 26666654 344444444 8889988877665 2223445567
Q ss_pred HHHHHHhc
Q 005924 160 RFYKWFTE 167 (669)
Q Consensus 160 ~F~~~L~~ 167 (669)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 78888865
No 152
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=59.20 E-value=42 Score=34.54 Aligned_cols=90 Identities=11% Similarity=-0.070 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEecCCCC---Cccc--hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCC
Q 005924 98 EGFAKALAEEIKARYEKAAVKVVDLDDY---AMDD--EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (669)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~dl~~~---~~~~--~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~ 172 (669)
+.-++.+++.|.+. |..+-.+.+-++ +... +..+..+.+++.+||.|++- .+.|+++|.....+
T Consensus 12 ~~~~~~l~~~l~~~--G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na--------V~~~~~~l~~~~~~- 80 (255)
T PRK05752 12 AEECAALAASLAEA--GIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA--------ARLGLELLDRYWPQ- 80 (255)
T ss_pred HHHHHHHHHHHHHc--CCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH--------HHHHHHHHHhhCCC-
Confidence 34556677777766 666544422222 1110 11334577888888887544 56677777653322
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
..+.++++.| +...+.|++.|.+...
T Consensus 81 --~~~~~~~aVG-------------~~Ta~al~~~G~~~~~ 106 (255)
T PRK05752 81 --PPQQPWFSVG-------------AATAAILQDYGLDVSY 106 (255)
T ss_pred --CcCCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 4457888877 5555677788876444
No 153
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.86 E-value=82 Score=29.23 Aligned_cols=111 Identities=12% Similarity=0.000 Sum_probs=66.9
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L 165 (669)
..|+-++.-|.--+....|...+-+..| ++++++.-+... +++.+...+++.=+++.|+. .+.-.+.+....+.|
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~G---feVi~lg~~~s~-e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~L 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLG---FDVDVGPLFQTP-EEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKEL 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCC---cEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHHH
Confidence 4567778888888887777777654444 566776644222 23666666666544454554 455556788888888
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecce
Q 005924 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (669)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (669)
++.. +...+ |+.=|.-. +.-.+.|+++|..+++..|
T Consensus 78 ~~~g-----~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 78 DKLG-----RPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HhcC-----CCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 7643 33333 33323221 2222458899999988765
No 154
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=58.62 E-value=12 Score=36.18 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceee-cCCCCcHHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG-DDDQCIEDDFTAWR 232 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g-D~~~~~e~~f~~W~ 232 (669)
+...+++|+-.||+....++..+..+...|++.|++... .+.. ||.+.+.+.+++|.
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~-~~iv~Dd~~~i~~~l~~~~ 59 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLAD-RAIVKDDIYQIRAQVSAWI 59 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEE-EEEcCCCHHHHHHHHHHHH
Confidence 567899999999999877888899999999999998554 4443 44334445555553
No 155
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.23 E-value=47 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=25.6
Q ss_pred hhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE
Q 005924 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK 118 (669)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~ 118 (669)
...+....+..++.++ |+++..++.+++.++++||++.+-
T Consensus 37 ~ll~~~~~~~~~v~ll-----G~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 37 ALLELAAQKGLRVFLL-----GAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHHHcCCeEEEE-----CCCHHHHHHHHHHHHHHCCCcEEE
Confidence 3444444456666665 666777777777777788877654
No 156
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=56.90 E-value=95 Score=34.95 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=75.2
Q ss_pred eEEEEEECCC-------chHHHHHHHHHHHHHhhhCCCeeEEecCCCCC--ccc-hhHHhhhcc--CCeEEEEEecCCCC
Q 005924 85 KVTVFYGTQT-------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA--MDD-EQYEEKLKK--ETLAFFMVATYGDG 152 (669)
Q Consensus 85 ~v~I~YgSqt-------Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~--~~~-~~~~~~l~~--~~~vi~~~sTyG~G 152 (669)
++.++-+|+. ..+++.++++.+.|++. + +++++....+ .++ ..+.+.+.+ -+.+|+..+|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL--P--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC--C--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4566666666 34677777777777654 3 4555544443 111 123334443 47899999999654
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCc--------chHHHHHHHHHHHHHHHHcCCeEEecceeecCCC-C
Q 005924 153 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR--------QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-C 223 (669)
Q Consensus 153 ~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~ 223 (669)
......++. + ++.+.+++..+. .+.-+|.+ ..+-..|.++|-+...- .|+..+ .
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v--~g~~~d~~ 140 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVV--YGHWKDED 140 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEE--ECCCCCHH
Confidence 222333333 2 467888887764 24445543 56677888999775433 344332 4
Q ss_pred cHHHHHHHHH
Q 005924 224 IEDDFTAWRE 233 (669)
Q Consensus 224 ~e~~f~~W~~ 233 (669)
..+.+..|..
T Consensus 141 ~~~~i~~~~r 150 (452)
T cd00578 141 VLRKIESWAR 150 (452)
T ss_pred HHHHHHHHHH
Confidence 5678888885
No 157
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=54.51 E-value=38 Score=29.05 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred EEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 005924 297 VNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (669)
Q Consensus 297 a~v~~~~~L~~~~~~r~~~hle~di~~~--~~~Y~~GD~l~I~p~ 339 (669)
++|++.++++ .++.+++|.+++. .+.|+||.++.|.-.
T Consensus 2 ~~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6888889987 3788999988743 478999999999766
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=53.50 E-value=1.6e+02 Score=26.12 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=59.8
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~ 167 (669)
|+.++.-|..-.+.-.+...+-+.. |++ ++++...- ..+++...+.+.+.-+++.|+. .+.....+.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~-G~~--V~~lg~~~-~~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA-GFE--VIDLGVDV-PPEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC-CCE--EEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 4566777777777776666665443 554 45554322 2223555565555433333433 34444777888888876
Q ss_pred CCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 168 GNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 168 ~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
.. ..+..+.+=|. ++.... +.++++|+..++..
T Consensus 77 ~~-----~~~~~i~vGG~------~~~~~~----~~~~~~G~D~~~~~ 109 (119)
T cd02067 77 AG-----LDDIPVLVGGA------IVTRDF----KFLKEIGVDAYFGP 109 (119)
T ss_pred cC-----CCCCeEEEECC------CCChhH----HHHHHcCCeEEECC
Confidence 42 12455444442 222211 46888999887763
No 159
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=52.98 E-value=40 Score=34.61 Aligned_cols=91 Identities=20% Similarity=0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhCCCeeEEecCCCCCcc--chhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 005924 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMD--DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (669)
Q Consensus 99 ~~A~~la~~l~~~~~g~~~~v~dl~~~~~~--~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~ 176 (669)
.-|..+++.+... |..+-.+.+-++... -...+..+..++.|+|-|+.- ...|++.+.....+ +++
T Consensus 11 ~~~~~~~~~l~~~--G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~a--------v~~~~~~l~~~~~~--~~~ 78 (248)
T COG1587 11 EQAEELAALLRKA--GAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNA--------VRFFFEALKEQGLD--ALK 78 (248)
T ss_pred hhhHHHHHHHHhC--CCcceeecceeeecchhHHHHHhccccCCEEEEECHHH--------HHHHHHHHHhhccc--ccc
Confidence 4555666666655 554433333222220 111344466667777766543 56666777654322 578
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
++++++.| ....+.|+++|.+....
T Consensus 79 ~~~i~aVG-------------~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 79 NKKIAAVG-------------EKTAEALRKLGIKVDFI 103 (248)
T ss_pred cCeEEEEc-------------HHHHHHHHHhCCCCCcC
Confidence 89999998 66677899999877544
No 160
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=52.88 E-value=62 Score=29.89 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=46.8
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCC
Q 005924 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (669)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 154 (669)
+.+.+.+.+.-..+-+|+-+|+++.+|.++.|... +.+..++..++-... ...+.+.+++|+++ . .|+-
T Consensus 6 ~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t 74 (153)
T cd05009 6 LAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRL 74 (153)
T ss_pred HHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-c--CChh
Confidence 34444443334445577899999999999888753 225555555553322 11244455666655 2 3333
Q ss_pred ChhHHHHHHHHhc
Q 005924 155 TDNAARFYKWFTE 167 (669)
Q Consensus 155 p~~a~~F~~~L~~ 167 (669)
.+...+..+++++
T Consensus 75 ~~~~~~~~~~~~~ 87 (153)
T cd05009 75 EEKLESLIKEVKA 87 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 3556667777765
No 161
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.99 E-value=3.1e+02 Score=28.93 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeE
Q 005924 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (669)
Q Consensus 154 ~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (669)
.|.+..-|++.|+.... .++|+++.|+|-| +-++|-+...|.+.||+.
T Consensus 139 ~p~T~~gii~~L~~~~i---~l~Gk~vvViG~g-------g~vGkpia~~L~~~gatV 186 (283)
T PRK14192 139 GSATPAGIMRLLKAYNI---ELAGKHAVVVGRS-------AILGKPMAMMLLNANATV 186 (283)
T ss_pred cCCcHHHHHHHHHHcCC---CCCCCEEEEECCc-------HHHHHHHHHHHHhCCCEE
Confidence 35555779998876433 3999999999955 336788888899999954
No 162
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=51.47 E-value=76 Score=31.86 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhCCCeeEEe---cCCCCCccc-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 005924 101 AKALAEEIKARYEKAAVKVV---DLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (669)
Q Consensus 101 A~~la~~l~~~~~g~~~~v~---dl~~~~~~~-~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~ 176 (669)
+..+++.|.+. |+++..+ ++...+... ..-...+..++.+||.|++- +..|++++.+. ....+.
T Consensus 13 ~~~l~~~l~~~--G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a--------v~~~~~~~~~~--~~~~~~ 80 (249)
T PRK05928 13 AEELVELLREL--GFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA--------VEFLLSALKKK--KLKWPK 80 (249)
T ss_pred HHHHHHHHHHc--CCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH--------HHHHHHHHHhc--CcCCCC
Confidence 34556666655 5655433 222211110 11223356788888888654 77788888621 123367
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
+.++.+.| +...+.|++.|.+..
T Consensus 81 ~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 81 NKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 78888887 555567778887654
No 163
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=50.98 E-value=83 Score=32.81 Aligned_cols=88 Identities=8% Similarity=0.014 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEecC---CCCCc-cchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCC
Q 005924 98 EGFAKALAEEIKARYEKAAVKVVDL---DDYAM-DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (669)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~dl---~~~~~-~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~ 173 (669)
+.-++.+++.|++. |.++-.+.+ ...+. .....+.++.+++.+||.|++- .+.|..++ +. .
T Consensus 27 ~~q~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V~~~~~~~-~~----~ 91 (266)
T PRK08811 27 SGEHAPLRRAVARH--GGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------VRAAHRLL-PL----Q 91 (266)
T ss_pred HHHHHHHHHHHHHC--CCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------HHHHHHHh-cc----c
Confidence 44566777888766 665544333 21111 1112445677889888887543 44444433 21 2
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
++.+.++++.| +.-.+.|++.|.....
T Consensus 92 ~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 92 RPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred CccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 36788888887 4555677788976543
No 164
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=48.54 E-value=1.4e+02 Score=33.31 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=61.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
.-++|.|||.+++++..++.+.+ + |..+.++++.-+.+=+ +.+.+-+.+.+.|+++=-++-.|..-....++.
T Consensus 269 d~~iV~~Gs~~~~a~ea~~~L~~----~--G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~ 342 (407)
T PRK09622 269 EVAIVALGTTYESAIVAAKEMRK----E--GIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVT 342 (407)
T ss_pred CEEEEEEChhHHHHHHHHHHHHh----C--CCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHH
Confidence 45778899988888877776643 4 5667777665543222 224455566777888866665555444445555
Q ss_pred HHHhcCCCCCCCCCCceE---EEEEecCcch--HHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKF---GVFGLGNRQY--EHFNKIGIVLD 201 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~---avFGlGds~Y--~~f~~~~k~ld 201 (669)
.-|..... ..... .++|+|.... +..-.+.+.+.
T Consensus 343 ~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~ 381 (407)
T PRK09622 343 SAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELN 381 (407)
T ss_pred HHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHH
Confidence 55543210 01233 6778876665 44444444443
No 165
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=47.97 E-value=32 Score=29.91 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEec
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVD 121 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~d 121 (669)
+++++.||-.||+..+|..+.+.+.++ |+.+++..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~--gi~~~v~~ 38 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQ 38 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 799999999999999999999999988 88777654
No 166
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=47.39 E-value=1.1e+02 Score=29.56 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=31.9
Q ss_pred hccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe
Q 005924 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (669)
Q Consensus 136 l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl 185 (669)
+...+.++|++|-| ++..|...++-++||... ..||...|...
T Consensus 84 i~~aD~ivFvtPqY-N~gypA~LKNAlD~lyhe------W~gKPalivSy 126 (199)
T KOG4530|consen 84 ILEADSIVFVTPQY-NFGYPAPLKNALDWLYHE------WAGKPALIVSY 126 (199)
T ss_pred HhhcceEEEecccc-cCCCchHHHHHHHHhhhh------hcCCceEEEEe
Confidence 55678999999999 677777788888998653 45666555543
No 167
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.22 E-value=1.4e+02 Score=28.82 Aligned_cols=112 Identities=11% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC-ccchhHHhhhccC--CeEEEEEecCCCC
Q 005924 76 EADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKE--TLAFFMVATYGDG 152 (669)
Q Consensus 76 ~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~--~~vi~~~sTyG~G 152 (669)
......+..++.++ |.++..++++++.|+++||++.+.-..---++ .+++.+++.+.+. ++|++++.+-
T Consensus 41 ~~~~~~~~~~ifll-----G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P--- 112 (172)
T PF03808_consen 41 LRRAEQRGKRIFLL-----GGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP--- 112 (172)
T ss_pred HHHHHHcCCeEEEE-----eCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC---
Confidence 33333344555554 45566666777777778887665433211122 2233466666644 5666654432
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcC
Q 005924 153 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 208 (669)
Q Consensus 153 ~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lG 208 (669)
--+.|...+... +... .++|+|..- +.+.+..+..-+.+.++|
T Consensus 113 ----kQE~~~~~~~~~------l~~~--v~i~vG~~~-d~~aG~~~raP~w~~~~g 155 (172)
T PF03808_consen 113 ----KQERWIARHRQR------LPAG--VIIGVGGAF-DFLAGKVKRAPKWMRRLG 155 (172)
T ss_pred ----HHHHHHHHHHHH------CCCC--EEEEECchh-hhhccCcCccCHHHHHcC
Confidence 223455555443 3332 566776332 333333333344444444
No 168
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=46.30 E-value=85 Score=34.41 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
..+|.++||.-|-.+++...-+.|..... =.+. ..|.- +.-+..||.. ...|-.++....
T Consensus 66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~L------L~Yp-~~YEG--------~E~S~nviYt-----Ga~PNQ~~~pl~ 125 (363)
T PF13433_consen 66 EDGVRAIFGCYTSASRKAVLPVVERHNAL------LFYP-TQYEG--------FECSPNVIYT-----GAAPNQQLLPLI 125 (363)
T ss_dssp HS---EEEE--SHHHHHHHHHHHHHCT-E------EEE--S----------------TTEEE------S--GGGTHHHHH
T ss_pred hCCccEEEecchhhhHHHHHHHHHhcCce------EEec-ccccc--------ccCCCceEEc-----CCCchhhHHHHH
Confidence 34577778877777777665555533211 1111 11211 2222334432 223446789999
Q ss_pred HHHhcCCCCCCCCCC-ceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 163 KWFTEGNDRGPWLQQ-LKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~-~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
+|+.+. .| +++...| |.|-|=-.+-|.+.+.+++.|++.+.+.
T Consensus 126 ~~~~~~-------~G~~r~~lvG---SdYv~pre~Nri~r~~l~~~GgevvgE~ 169 (363)
T PF13433_consen 126 DYLLEN-------FGAKRFYLVG---SDYVYPRESNRIIRDLLEARGGEVVGER 169 (363)
T ss_dssp HHHHHH-------S--SEEEEEE---ESSHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHhc-------cCCceEEEec---CCccchHHHHHHHHHHHHHcCCEEEEEE
Confidence 999774 36 8999999 4576555666777788999999988664
No 169
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=45.62 E-value=35 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.6
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM 127 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~ 127 (669)
-+++|.|.|...+..|+.|.+.+.++ +..+++..+.+.+.
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~--g~~v~~~~i~~l~~ 63 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEK--GINVEVVEIEGLQT 63 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEE---E--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeeeecc
Confidence 79999999999999999999999987 77787765554433
No 170
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=45.05 E-value=79 Score=36.00 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEe---cCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 005924 98 EGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (669)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~---dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~ 174 (669)
+.-|..+++.|++. |+++-.+ .+...+.. +..+.++.+++-+||-|+.= ...|+++|.+...+--.
T Consensus 260 ~~q~~~l~~~L~~~--GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~ng--------V~~Ff~~l~~~~~D~R~ 328 (474)
T PRK07168 260 TNKTSVMKQKLQEA--GAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAES--------VEILMQSCSKYKKDIRS 328 (474)
T ss_pred HHHHHHHHHHHHHc--CCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHHH--------HHHHHHHHHHcCCChHH
Confidence 44556777777766 6654332 22322222 34677788999888876543 67788999875433223
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeE
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (669)
|. .++++.| ....+.|++.|...
T Consensus 329 l~-~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 329 LQ-AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred hC-CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 55 6888888 55567788888654
No 171
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=44.71 E-value=87 Score=31.04 Aligned_cols=89 Identities=20% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhCCCeeEEecCCCCCc----cchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 005924 101 AKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (669)
Q Consensus 101 A~~la~~l~~~~~g~~~~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~ 176 (669)
+..+.+.|.+. |+.+..+.+-+... ........+.+.+.|||.|+.- +..|++.+.... ..++.
T Consensus 10 ~~~l~~~L~~~--G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a--------v~~~~~~~~~~~--~~~~~ 77 (239)
T cd06578 10 ADELAALLEAL--GAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA--------VEAFFEALEELG--LRALA 77 (239)
T ss_pred hHHHHHHHHHc--CCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH--------HHHHHHHHHhhC--Ccccc
Confidence 56677777766 66655443222211 1112334455678888887744 677777776432 12377
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
++++.+.| +...+.|++.|.+....
T Consensus 78 ~~~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 78 GLKIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 88888887 66667888999887654
No 172
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=44.54 E-value=46 Score=33.47 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.4
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccC
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 340 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~I~p~N 340 (669)
|.++|++.+.++. +++++.|+.+.. .+.|+||.++.|..++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 4578888888863 688888887653 5899999999998654
No 173
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=41.97 E-value=1.3e+02 Score=30.76 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=61.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe---cCCCCCccchhH--HhhhccCCeEEEEEecCCCCCCChh
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQY--EEKLKKETLAFFMVATYGDGEPTDN 157 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~---dl~~~~~~~~~~--~~~l~~~~~vi~~~sTyG~G~~p~~ 157 (669)
+++|+|+-+.- |. +.|.+.|.++ |+.+..+ +......+.... .....+.+.++|-||..
T Consensus 123 ~~~vl~~~~~~-~r-----~~l~~~L~~~--G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~-------- 186 (248)
T COG1587 123 GKRVLILRGNG-GR-----EVLEEKLEER--GAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSA-------- 186 (248)
T ss_pred CCeEEEEcCCC-ch-----HHHHHHHHhC--CCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHH--------
Confidence 45666664432 22 5677777777 7765543 222222221001 12234567888887776
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
++.|++.+...... ++.+++++++| ....+.++++|.+...
T Consensus 187 v~~~~~~~~~~~~~--~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 187 VRALLALAPESGIE--FLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred HHHHHHHccccchh--HhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 88899988764321 46678999998 6677789999988643
No 174
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.95 E-value=54 Score=27.50 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=24.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhh
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKAR 111 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (669)
+++|+.++-.|++..++.+|.+.+.+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~ 27 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKEL 27 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHC
Confidence 478999999999999999999999755
No 175
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=41.38 E-value=80 Score=32.64 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc-cCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCC
Q 005924 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWL 175 (669)
Q Consensus 97 te~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~-~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l 175 (669)
..++|++|++.+.+. |+.+...+--..|-..---+.-+. +.++=|+-+|.. .+..|...-+|=+.|.. +
T Consensus 79 ~~eLa~~i~~~l~~~--gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~-------l 148 (253)
T cd07363 79 SPELAERVAELLKAA--GIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAP-------L 148 (253)
T ss_pred CHHHHHHHHHHHHhc--CCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHh-------h
Confidence 345899999999877 776654321112211100111122 233323333332 22334444444455654 4
Q ss_pred CCceEEEEEecCcch
Q 005924 176 QQLKFGVFGLGNRQY 190 (669)
Q Consensus 176 ~~~~~avFGlGds~Y 190 (669)
...+++|+|.|+.+.
T Consensus 149 ~~~~v~ii~SG~lsH 163 (253)
T cd07363 149 RDEGVLIIGSGSSVH 163 (253)
T ss_pred hhCCEEEEecCccee
Confidence 456899999999886
No 176
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=41.28 E-value=60 Score=34.98 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=53.4
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccch-hHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005924 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~-~~~~~l~~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
++..-++|.|||+++.+.+.|+.|.+ + |+.+.++|+....+-+. .+...+.+.+.||++=-.+-.|..-..
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~----~--Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~-- 271 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEK----E--GISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAE-- 271 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHh----c--CCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHH--
Confidence 34555777799999999888887743 4 67788888776655443 255667788888888777756665444
Q ss_pred HHHHHHhc
Q 005924 160 RFYKWFTE 167 (669)
Q Consensus 160 ~F~~~L~~ 167 (669)
+.++|.+
T Consensus 272 -la~~l~~ 278 (327)
T PRK09212 272 -IAALIMK 278 (327)
T ss_pred -HHHHHHH
Confidence 4445543
No 177
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=41.11 E-value=1e+02 Score=32.10 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc--hhHHhhhc-cCCe-EEEEEecCCCCCCChhHHHHHHHHhcCCCCC
Q 005924 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLK-KETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (669)
Q Consensus 97 te~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~-~~~~-vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~ 172 (669)
..++|++|++.+.+. |+.+...+-.+...+. ---+.-+. +.++ +|.++-+.+ ...+...-+|=+-|.+.-.
T Consensus 86 ~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~-- 160 (268)
T cd07371 86 DVELAEACVEEGRKA--GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATR-- 160 (268)
T ss_pred CHHHHHHHHHHHHHC--CCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHH--
Confidence 567899999999877 7777654333332221 00011122 2343 333332332 2222333333334432100
Q ss_pred CCCCCceEEEEEecCcchH------------HHHHHHHHHHHHHHHc
Q 005924 173 PWLQQLKFGVFGLGNRQYE------------HFNKIGIVLDEELCKQ 207 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~------------~f~~~~k~ld~~L~~l 207 (669)
-.+++++|+|.|+.++. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12478999999998863 2335677777777654
No 178
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=41.10 E-value=54 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=31.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCC
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD 123 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~ 123 (669)
|++++.++--||+..+|++|.+.+.++ |+++.+....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~--gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL--GIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT--TECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc--cCceEEEEec
Confidence 589999999999999999999999988 7766655433
No 179
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=40.80 E-value=3.7e+02 Score=26.55 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCeEEEE----EECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCC-eEEEEEecCCCCCCChh
Q 005924 83 KTKVTVF----YGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDN 157 (669)
Q Consensus 83 ~~~v~I~----YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G~~p~~ 157 (669)
|++|.|+ +-+.+|--|.+|+.|+..+.++ |.++.|+...+..... ..+++ +=++-.++-..|..-.-
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYK------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCC------CcccCCeEEEEeCCCCCCchHHH
Confidence 4566666 3355999999999999999988 8889998776554333 23332 33444566656632221
Q ss_pred HHHHHHHHhcCCC-CCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 158 AARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 158 a~~F~~~L~~~~~-~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
.-.|+..+..... .....+.--+-++|.+...+ .--+-++|...|.+.+...
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~------~~~~~r~~~~~g~~v~vN~ 125 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPF------FLPFLRKLRKKGGKVVVNM 125 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHH------HHHHHHhhhhcCCcEEECC
Confidence 1112221111100 00001222455666542222 2334456667788877654
No 180
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=40.29 E-value=71 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE--EecCCCC
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK--VVDLDDY 125 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~--v~dl~~~ 125 (669)
++++++.||--||+..++..|.+.+.+. +.... ..++++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~--~~~~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKA--GLEIPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEEEEcchhhC
Confidence 4689999999999999999999999866 55433 3344443
No 181
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=40.01 E-value=1.2e+02 Score=29.97 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=55.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE---EecCCCCCccchhHHhhhccC--CeEEEEEecCCCCCCChhH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKE--TLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~---v~dl~~~~~~~~~~~~~l~~~--~~vi~~~sTyG~G~~p~~a 158 (669)
.+..|+|..--+....+++.|.+ . |+.+. ++.....+.. +.....+.+. +.++|.|+. .+
T Consensus 121 ~~~~il~~~g~~~~~~l~~~L~~----~--g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~--------~v 185 (239)
T cd06578 121 KGKRILRPRGGRAREDLAEALRE----R--GAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTSPS--------TV 185 (239)
T ss_pred CCCEEEEEcCcchhHHHHHHHHH----C--CCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeCHH--------HH
Confidence 45566666655555555555543 3 44333 3333222211 1123333333 345555543 47
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
..|++++.+.. ..++.+.++.++| ....+.|++.|.+.+..
T Consensus 186 ~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 186 RNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred HHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 88888886532 1237788888887 66677888899876643
No 182
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=39.88 E-value=51 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCC
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKA 115 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~ 115 (669)
+++++.++-.|++..++++|.+.+.+. +.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~--~~ 29 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKEL--GI 29 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHC--CC
Confidence 467888888899999999999999876 55
No 183
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.82 E-value=5e+02 Score=27.77 Aligned_cols=117 Identities=9% Similarity=0.024 Sum_probs=74.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHH---hhhccC---CeEEEEEecC-------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE---EKLKKE---TLAFFMVATY------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~---~~l~~~---~~vi~~~sTy------- 149 (669)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-..+ ++++ .++.++ +.+++-.|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t~-~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~ 109 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEA--GIRSLEHRLPADTSQ-ARLLALIAELNADPSVNGILLQLPLPAHIDEAR 109 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHH
Confidence 45677777777778888888888888776 788887777543221 1222 223322 3566555532
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHH
Q 005924 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (669)
Q Consensus 150 ------------------------G-~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (669)
| .+-.|-++..-++.|+... ..++|++++|+|.|.. +++-+...|
T Consensus 110 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~---i~l~Gk~V~vIG~s~i-------vG~PmA~~L 179 (301)
T PRK14194 110 VLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC---GDLTGKHAVVIGRSNI-------VGKPMAALL 179 (301)
T ss_pred HHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC---CCCCCCEEEEECCCCc-------cHHHHHHHH
Confidence 1 1223555565666666543 3499999999997743 478888889
Q ss_pred HHcCCeEE
Q 005924 205 CKQGGARL 212 (669)
Q Consensus 205 ~~lGa~~i 212 (669)
.+.|++..
T Consensus 180 ~~~gatVt 187 (301)
T PRK14194 180 LQAHCSVT 187 (301)
T ss_pred HHCCCEEE
Confidence 99998764
No 184
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=39.16 E-value=88 Score=31.72 Aligned_cols=85 Identities=15% Similarity=-0.002 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc-CCeEEEEEecCCCCCCChhHHHHH-HHHhcCCCCCCCCCCc
Q 005924 101 AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARFY-KWFTEGNDRGPWLQQL 178 (669)
Q Consensus 101 A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vi~~~sTyG~G~~p~~a~~F~-~~L~~~~~~~~~l~~~ 178 (669)
++.+++.|.+. |+.+..+.+=++.+..+.....+.+ ++.+||.|++ +.+++ ++.... ..+.++
T Consensus 12 ~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n---------aV~~~~~~~~~~----~~~~~~ 76 (240)
T PRK09189 12 AERTAARLRAM--GHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE---------AVRHLAALGERL----LPHLAL 76 (240)
T ss_pred hHHHHHHHHHC--CCceEEecccccccChhhhhhhhcCCcCEEEEECHH---------HHHHHHhcchhh----HHhcCC
Confidence 45566666666 6666555443333221112222333 4677776543 44443 221111 125677
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 179 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 179 ~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
++++.| +...+.|++.|.+.+.
T Consensus 77 ~~~aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 77 PLFAVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred eEEEEc-------------HHHHHHHHHcCCCCCc
Confidence 888877 5566778889987443
No 185
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.86 E-value=5.1e+02 Score=27.60 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=80.4
Q ss_pred hhHHHHhcC---CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHH---hhhccC---CeEEE
Q 005924 74 DDEADIAAG---KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE---EKLKKE---TLAFF 144 (669)
Q Consensus 74 ~~~~~~~~~---~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~---~~l~~~---~~vi~ 144 (669)
+.++++.+. ..++.|+.....-.+..|++...+.+.+- |+.++++.+.+...+ ++++ .++.++ +.+++
T Consensus 20 ~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~-~el~~~i~~lN~d~~V~GIlv 96 (296)
T PRK14188 20 AEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEA--GMASFEHKLPADTSQ-AELLALIARLNADPAIHGILV 96 (296)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHhCCCCCcEEEE
Confidence 344444432 45788888888888899999888888877 788888877543222 1233 333332 35666
Q ss_pred EEecC------------------------C--------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHH
Q 005924 145 MVATY------------------------G--------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH 192 (669)
Q Consensus 145 ~~sTy------------------------G--------~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~ 192 (669)
-.|-- + .+-.|-++..-++.|+... ..++|++++|+|=
T Consensus 97 q~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~---i~~~Gk~V~viGr------- 166 (296)
T PRK14188 97 QLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVH---GDLSGLNAVVIGR------- 166 (296)
T ss_pred eCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhC---CCCCCCEEEEEcC-------
Confidence 55522 0 1224556666666666533 2399999999981
Q ss_pred HHHHHHHHHHHHHHcCCeEE
Q 005924 193 FNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 193 f~~~~k~ld~~L~~lGa~~i 212 (669)
.+.+++-+..+|.+.|++..
T Consensus 167 s~~mG~PmA~~L~~~g~tVt 186 (296)
T PRK14188 167 SNLVGKPMAQLLLAANATVT 186 (296)
T ss_pred CcchHHHHHHHHHhCCCEEE
Confidence 23467888888988998764
No 186
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.45 E-value=3e+02 Score=24.80 Aligned_cols=109 Identities=11% Similarity=-0.018 Sum_probs=61.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCe-EEEEEecCCCCCCChhHHHHHHHHh
Q 005924 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKWFT 166 (669)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~-vi~~~sTyG~G~~p~~a~~F~~~L~ 166 (669)
|+.++--|---.+...+...+-+.. | .+++++-...+.+ ++.....+.+. +|++|++. +.....+.++.+.|+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~-G--~~vi~lG~~vp~e-~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA-G--FEVIYTGLRQTPE-EIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC-C--CEEEECCCCCCHH-HHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHH
Confidence 3445666666666666666665444 4 5556665433222 24454555544 55555554 455567777888887
Q ss_pred cCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEeccee
Q 005924 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (669)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~ 217 (669)
+.. +.+.++.+ | |. . .+...++++++|...++..+.
T Consensus 76 ~~~-----~~~i~i~~-G-G~-~-------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 ELG-----AGDILVVG-G-GI-I-------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred hcC-----CCCCEEEE-E-CC-C-------CHHHHHHHHHCCCCEEECCCC
Confidence 653 33444333 2 32 1 244457888999988876653
No 187
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=37.70 E-value=1.1e+02 Score=27.66 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCeEEEEEECCCchHHHH--HHHHHHHHHhhhCCCeeEEe------cCCCCCccchhHHhhhccCCeEEEEE
Q 005924 83 KTKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVV------DLDDYAMDDEQYEEKLKKETLAFFMV 146 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~~~v~------dl~~~~~~~~~~~~~l~~~~~vi~~~ 146 (669)
+|+++++-++.+|-|..| |+.|.+..++. |..+++- -.+.++.++ +...++||++.
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~--G~~i~VE~qg~~g~~~~lt~~~------i~~Ad~VIia~ 65 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLE--KWGVKIETQGALGTENRLTDED------IRRADVVLLIT 65 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCcCcCCCCCHHH------HHhCCEEEEEe
Confidence 367888899999987765 58888888877 7766532 123333344 77888888874
No 188
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=37.69 E-value=59 Score=33.29 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=29.2
Q ss_pred EEecCCCCC-CceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 303 RELHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 303 ~~L~~~~~~-r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
+.+.++++. ..+++++|+.++..+.|+||+++.|.+++
T Consensus 6 ~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 6 RVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 345555543 37999999987667899999999998765
No 189
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=37.09 E-value=1.5e+02 Score=32.09 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=64.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
..++++||=..|.-+.+|..|.+.+.++ |..+-+++..-...+- +- +++.-....+.++..|++
T Consensus 76 P~vVl~HGL~G~s~s~y~r~L~~~~~~r--g~~~Vv~~~Rgcs~~~--------n~------~p~~yh~G~t~D~~~~l~ 139 (345)
T COG0429 76 PLVVLFHGLEGSSNSPYARGLMRALSRR--GWLVVVFHFRGCSGEA--------NT------SPRLYHSGETEDIRFFLD 139 (345)
T ss_pred ceEEEEeccCCCCcCHHHHHHHHHHHhc--CCeEEEEecccccCCc--------cc------CcceecccchhHHHHHHH
Confidence 4688888888888888999999999998 8888888766544322 11 122213333478999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCe
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 210 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 210 (669)
+++.. ....++..+|. --.+-.+.+.|-+-|..
T Consensus 140 ~l~~~------~~~r~~~avG~--------SLGgnmLa~ylgeeg~d 172 (345)
T COG0429 140 WLKAR------FPPRPLYAVGF--------SLGGNMLANYLGEEGDD 172 (345)
T ss_pred HHHHh------CCCCceEEEEe--------cccHHHHHHHHHhhccC
Confidence 99875 34566777773 12244566666665554
No 190
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=37.00 E-value=1.4e+02 Score=30.24 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhCCCeeEEecCCCCC----ccchhHHhhhccCCeEEEEEecCCCCCCCh-hHHHHHHHHhc
Q 005924 100 FAKALAEEIKARYEKAAVKVVDLDDYA----MDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKWFTE 167 (669)
Q Consensus 100 ~A~~la~~l~~~~~g~~~~v~dl~~~~----~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~-~a~~F~~~L~~ 167 (669)
+-..|++.|++. |+++.+..+++.+ .+. |.++++||+.+-+ +.++.++ ..+.|.+++.+
T Consensus 24 ~~~~~~~~L~~~--gf~V~~~~~~d~~~~~~~~~------L~~~D~lV~~~~~-~~~~l~~eq~~~l~~~V~~ 87 (215)
T cd03142 24 MHGTIAAALAEY--GFDVQTATLDEPEHGLTEEV------LAETDVLLWWGHI-AHDEVKDEIVERVHRRVLD 87 (215)
T ss_pred HHHHHHHHHHhc--CcEEEEEeccCccccCCHhH------HhcCCEEEEeCCC-CcCcCCHHHHHHHHHHHHc
Confidence 344566666666 7888866666543 223 7888988775444 4556665 57778888865
No 191
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.77 E-value=5.4e+02 Score=27.25 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=80.3
Q ss_pred hhHHHHhcC---CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc--hhHHhhhccC---CeEEEE
Q 005924 74 DDEADIAAG---KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFM 145 (669)
Q Consensus 74 ~~~~~~~~~---~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vi~~ 145 (669)
+.++++.+. ..++.|+.-..--.+..|++...+.+.+- |+.++++.+.+...++ ...+.++.++ +.+++-
T Consensus 19 ~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq 96 (282)
T PRK14180 19 TQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQV--GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 96 (282)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 344545432 45788888888888899999888888877 8888888876543222 1122333322 345555
Q ss_pred EecC-------------------------------C--CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHH
Q 005924 146 VATY-------------------------------G--DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH 192 (669)
Q Consensus 146 ~sTy-------------------------------G--~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~ 192 (669)
.|-- | .+-.|-++..-++.|+.... .++|++++|+|=+
T Consensus 97 ~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i---~l~Gk~vvViGrS------ 167 (282)
T PRK14180 97 LPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI---KTEGAYAVVVGAS------ 167 (282)
T ss_pred CCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC------
Confidence 4422 2 22356666666777765432 3889999999833
Q ss_pred HHHHHHHHHHHHHHcCCeEE
Q 005924 193 FNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 193 f~~~~k~ld~~L~~lGa~~i 212 (669)
+-++|=+...|.+.||+..
T Consensus 168 -~~VGkPla~lL~~~~ATVt 186 (282)
T PRK14180 168 -NVVGKPVSQLLLNAKATVT 186 (282)
T ss_pred -CcchHHHHHHHHHCCCEEE
Confidence 3356777778888888764
No 192
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.66 E-value=49 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=27.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v 119 (669)
|++|+++.|+-.+|+ -+|+++.+.++++ |+.+++
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~--gi~~~i 34 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQ--GKDIEV 34 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHC--CCceEE
Confidence 467999999988666 9999999989887 776655
No 193
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.26 E-value=33 Score=31.64 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred eEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 179 KFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 179 ~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
+++|+-.||.-+ .-++..+..+.++|++.|++........||.+...+.+++|.
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~ 56 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS 56 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH
Confidence 478888898765 345667888999999999986554333444333444444443
No 194
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=35.66 E-value=2.3e+02 Score=26.67 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhh-hCCCeeEEecCCCCCccchhHHhhhc-----cC-CeEEEEEecC-CCCCCChhH
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEKLK-----KE-TLAFFMVATY-GDGEPTDNA 158 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~-~~g~~~~v~dl~~~~~~~~~~~~~l~-----~~-~~vi~~~sTy-G~G~~p~~a 158 (669)
+++||+..+--+...++|.+.+... +..+++..++..+.+..+ ++..+. .. ++|++--+.. .+....+..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~ 78 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDE--LLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEI 78 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH---HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHH
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHH--HHHHHhcCCccCCCeEEEEecCccccccccHHHH
Confidence 5899999999999999999996543 112223333444433322 233322 22 3444444433 344555677
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHH
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~ 238 (669)
..|.+++.+. ..-.+-||-.. +.... .+++-+.+++.|.-.-++.. .+.++..|.......
T Consensus 79 ~~l~~~l~~~-------~~~~~lii~~~----~~~~~-~~k~~k~l~~~~~~~~~~~~-------~~~~~~~~i~~~~~~ 139 (172)
T PF06144_consen 79 KALIEYLSNP-------PPDCILIIFSE----EKLDK-RKKLYKALKKQAIVIECKKP-------KEQELPRWIKERAKK 139 (172)
T ss_dssp HHHHHHTTT---------SSEEEEEEES-----S--H-HHHHHHHHTTTEEEEEE-----------TTTHHHHHHHHHHH
T ss_pred HHHHHHHhCC-------CCCEEEEEEeC----Cchhh-hhhHHHHHhcccceEEecCC-------CHHHHHHHHHHHHHH
Confidence 7788888663 23344555433 11121 23355556554432211111 356778888765444
No 195
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.13 E-value=5.7e+02 Score=27.08 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=79.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHH---hhhccC---CeEEEEEecC-------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE---EKLKKE---TLAFFMVATY------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~---~~l~~~---~~vi~~~sTy------- 149 (669)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+...++ +++ .++.++ +.+++-.|--
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~-el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~ 108 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKV--GIYSELYEFPADITEE-ELLALIDRLNADPRINGILVQLPLPKHIDEKA 108 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 35677887777778899999988888877 8999998887542222 233 333333 3567666622
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHH
Q 005924 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (669)
Q Consensus 150 ------------------------G-~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (669)
| .+-.|-++..-++.|+...- .++|++++|+|=+ +-.+|=+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i---~l~Gk~vvViGrS-------~iVG~Pla~lL 178 (284)
T PRK14190 109 VIERISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNI---DISGKHVVVVGRS-------NIVGKPVGQLL 178 (284)
T ss_pred HHhcCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCC-------CccHHHHHHHH
Confidence 1 22356777777777776543 3999999999833 33578888888
Q ss_pred HHcCCeEE
Q 005924 205 CKQGGARL 212 (669)
Q Consensus 205 ~~lGa~~i 212 (669)
.+.||+..
T Consensus 179 ~~~~atVt 186 (284)
T PRK14190 179 LNENATVT 186 (284)
T ss_pred HHCCCEEE
Confidence 88898764
No 196
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=34.98 E-value=2.3e+02 Score=31.36 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecC---CCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL---DDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl---~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
.-++|.|||.+|++++.++.+.++ |.++-++.+ --+..+. +.+-+.+.+.|+++=-++--|..-.-+.+
T Consensus 261 e~~iV~~Gs~~~~~~eav~~lr~~------G~kvg~l~i~~~~PfP~~~--i~~~l~~~k~ViVvE~n~~~Gq~g~l~~e 332 (390)
T PRK08366 261 DFVFMGMGSLMGTVKEAVDLLRKE------GYKVGYAKVRWFRPFPKEE--LYEIAESVKGIAVLDRNFSFGQEGILFTE 332 (390)
T ss_pred CEEEEEeCccHHHHHHHHHHHHhc------CCceeeEEEeeecCCCHHH--HHHHHhcCCEEEEEeCCCCCCcccHHHHH
Confidence 358888999999999998888643 444444433 3333333 44546677888888666522332222232
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch--HHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~ 202 (669)
....|.+... -.-+.-.|.|+|-+.+ ++.-++.+.+.+
T Consensus 333 v~~~l~~~~~----~~~~~~~i~g~gGr~~t~~~i~~~~~~~~~ 372 (390)
T PRK08366 333 AKGALYNTDA----RPIMKNYIVGLGGRDFTVNDVKAIAEDMKK 372 (390)
T ss_pred HHHHHhccCC----CCceeceEeCcCCccCCHHHHHHHHHHHHH
Confidence 2222222110 0113457889988875 555555555433
No 197
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.69 E-value=22 Score=29.51 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhh
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKAR 111 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (669)
+++|+.++-.|++..++.+|.+.+.+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 689999999999999999999988643
No 198
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=34.30 E-value=1.9e+02 Score=31.49 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCC-eEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G~~p~~a~~ 160 (669)
+-+++.|+|.+-.|... .+.+.+.+.+. ++.+.+..+..-+.+-...+.+++..+ -+||+...+ +.+..
T Consensus 138 ~wk~vaily~~~~g~~~--l~~~~~~~~~~--g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~------~~~~~ 207 (384)
T cd06393 138 KWRSATVVYDDSTGLIR--LQELIMAPSRY--NIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSH------QMAAQ 207 (384)
T ss_pred CCcEEEEEEeCchhHHH--HHHHHHhhhcc--CceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCH------HHHHH
Confidence 56889999987655443 23566656544 555443223211112223566666443 333333333 56777
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcc
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQ 189 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~ 189 (669)
|++.+.+.. +.+..|+ +++.+..
T Consensus 208 il~qa~~~g-----m~~~~~~-~~~~~~~ 230 (384)
T cd06393 208 ILKQAMAMG-----MMTEYYH-FIFTTLD 230 (384)
T ss_pred HHHHHHHhc-----cccCceE-EEEccCc
Confidence 888887754 4455665 5655543
No 199
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.26 E-value=5e+02 Score=26.41 Aligned_cols=125 Identities=12% Similarity=0.010 Sum_probs=71.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC---Cccc----hhHHhhhccCCeEEEEEecCCCCCCC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY---AMDD----EQYEEKLKKETLAFFMVATYGDGEPT 155 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~---~~~~----~~~~~~l~~~~~vi~~~sTyG~G~~p 155 (669)
|+++.|+|.-++|. |+.+-+..+ ++...++.+.++ .... +.++..+++.+++| +.+ .-|
T Consensus 1 ~mki~vlt~g~yG~------R~~~nl~~~--~f~~~~v~v~~~Pe~~~~fie~P~~~Lp~~~e~Di~v--a~~----lHP 66 (224)
T COG1810 1 MMKILVLTDGEYGK------RAVNNLACK--GFKNQFVAVKEYPEELPDFIEEPEDLLPKLPEADIVV--AYG----LHP 66 (224)
T ss_pred CcEEEEEeeccchH------HHHHhHhhh--ccccceEEEEeccccccchhhCHHHhcCCCCCCCEEE--Eec----cCc
Confidence 67899999988873 333333333 232333322222 1111 22444555556544 333 245
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHH
Q 005924 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (669)
Q Consensus 156 ~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l 235 (669)
|.--..-+... ..+.+..|.+.++.. +..+++.+...++|+....|.-.++-..+. ..|.+.+
T Consensus 67 Dl~~~L~e~~~--------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~----~p~i~~F 129 (224)
T COG1810 67 DLLLALPEKAA--------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPNE----NPHIDEF 129 (224)
T ss_pred cHHHHHHHHHH--------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCCC----ChHHHHH
Confidence 66444444431 457888999976655 667899999999999988887766543222 5565544
Q ss_pred HHH
Q 005924 236 WPE 238 (669)
Q Consensus 236 ~~~ 238 (669)
.+.
T Consensus 130 ~e~ 132 (224)
T COG1810 130 AER 132 (224)
T ss_pred HHH
Confidence 333
No 200
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=32.92 E-value=2.1e+02 Score=31.24 Aligned_cols=91 Identities=9% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeeEEecCCCC-CccchhHHhhhccCCeEEEEEecCCCCCCChh
Q 005924 82 GKTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEPTDN 157 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~~~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~ 157 (669)
+-+++.|+|.+.. ..+. .++.|.+.+++. |+++......+. +.+...++.++.+..-+|+++..+ +.
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~------~~ 206 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEE--GYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA------DT 206 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhc--CceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH------HH
Confidence 5678999986432 2233 377788888776 666655433221 112234667776555555555544 56
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEec
Q 005924 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (669)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlG 186 (669)
+..|++...+.. +.+..|+.+.++
T Consensus 207 ~~~ll~~A~~~g-----m~~~~yv~i~~d 230 (387)
T cd06386 207 IRSIMLAAHRRG-----LTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHHHHcC-----CCCCCEEEEEEe
Confidence 788888776654 445567666664
No 201
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=32.20 E-value=2.5e+02 Score=31.19 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=55.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecC---CCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL---DDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl---~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
.-++|.|||.+|+++...+.+.++ |.++-++.+ --+..+. +.+-+.+.+.|+++=-++..|..-.-..+
T Consensus 263 e~viV~~GS~~~~~keav~~LR~~------G~kVGllri~~~rPFP~~~--i~~~l~~~k~ViVvE~n~s~g~~g~l~~d 334 (394)
T PRK08367 263 EIIFVTMGSLAGTLKEFVDKLREE------GYKVGAAKLTVYRPFPVEE--IRALAKKAKVLAFLEKNISFGLGGAVFAD 334 (394)
T ss_pred CEEEEEeCccHHHHHHHHHHHHhc------CCcceeEEEeEecCCCHHH--HHHHHccCCEEEEEeCCCCCCCCCcHHHH
Confidence 358888999999999998877653 343444433 3333332 43435566777777444323321122332
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch--HHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIV 199 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ 199 (669)
-..-|.... + -..+.-.+.|||-+.. +.+-.+.++
T Consensus 335 V~aal~~~~-~---~~~v~~~~~glgg~~~~~~~~~~~~~~ 371 (394)
T PRK08367 335 ASAALVNES-E---KPKILDFIIGLGGRDVTFKQLDEALEI 371 (394)
T ss_pred HHHHHhccC-C---CCeEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 223332211 0 1123467889997775 455444443
No 202
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.18 E-value=61 Score=34.02 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc-CCeEEE
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFF 144 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vi~ 144 (669)
..+++.|+|.+.+-++....+.+.+.+.+. |+++..+.+.+.+.- ...+..+.+ .+.+++
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~~--g~~l~~~~v~~~~~~-~~~~~~l~~~~da~~~ 190 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKKL--GIELVEIPVPSSEDL-EQALEALAEKVDALYL 190 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHHT--T-EEEEEEESSGGGH-HHHHHHHCTT-SEEEE
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHHc--CCEEEEEecCcHhHH-HHHHHHhhccCCEEEE
Confidence 568899999999888888888888888765 677665555543211 224444543 344333
No 203
>PTZ00110 helicase; Provisional
Probab=32.07 E-value=4.7e+02 Score=30.26 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCC-eEEEEEecCCCC--------
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDG-------- 152 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G-------- 152 (669)
...+++||..| .+-|+.|++.|... ++.+..+.-+....+.+.++..+.+.+ .|++.+...+.|
T Consensus 376 ~~~k~LIF~~t-----~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVET-----KKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred cCCeEEEEecC-----hHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 45577777644 55667777777655 555544422222222233566666544 466666666667
Q ss_pred ----CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcC
Q 005924 153 ----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 208 (669)
Q Consensus 153 ----~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lG 208 (669)
++|.+...|+..+.... + .--+|.-+..|.- .-...++.+-+.|++.+
T Consensus 449 VI~~d~P~s~~~yvqRiGRtG-R-~G~~G~ai~~~~~------~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 449 VINFDFPNQIEDYVHRIGRTG-R-AGAKGASYTFLTP------DKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEeCCCCCHHHHHHHhcccc-c-CCCCceEEEEECc------chHHHHHHHHHHHHHcc
Confidence 57888888887775422 1 1134555666542 22345677777777765
No 204
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=31.95 E-value=3.2e+02 Score=29.46 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe-cCCCC--CccchhHHhhhccCCeEEEEEecCCCCCCChhH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~--~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a 158 (669)
+.+++.|+|....+-....++.+.+.+++. |.++... .+... ..+-...+.++....-+|+++... +.+
T Consensus 136 ~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~------~~~ 207 (389)
T cd06352 136 NWHVAVVVYSDDSENCFFTLEALEAALREF--NLTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSS------EDV 207 (389)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHHHHhc--CCeEEEEEEecCCccchhHHHHHHHhhhcceEEEEECCH------HHH
Confidence 346788888777656667788999999766 5554321 12211 111123555665555344443332 567
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEe
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGl 185 (669)
..|++.+.... +.+..+.++|.
T Consensus 208 ~~~l~q~~~~g-----~~~~~~~~i~~ 229 (389)
T cd06352 208 RELLLAAHDLG-----LTSGDYVFILI 229 (389)
T ss_pred HHHHHHHHHcC-----CCCCcEEEEEE
Confidence 77888877654 44456777775
No 205
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=31.04 E-value=89 Score=30.95 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=31.6
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 005924 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (669)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~ 341 (669)
.++|+..++++ .++++++|+.++ .+.|+||.++.|..+++
T Consensus 2 ~~~v~~~~~~~-----~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVT-----HDVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcC-----CCeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 46788888776 378899998765 58999999999976543
No 206
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.70 E-value=2.7e+02 Score=26.44 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=62.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhh-ccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
.+|+|.=--+-|.... |+-++..|.+. |++|.. .--....+ ++.... .+.--+|.+|+++|... ..+....
T Consensus 13 prvlvak~GlDgHd~g-akvia~~l~d~--GfeVi~--~g~~~tp~-e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~lv 84 (143)
T COG2185 13 PRVLVAKLGLDGHDRG-AKVIARALADA--GFEVIN--LGLFQTPE-EAVRAAVEEDVDVIGVSSLDGGHL--TLVPGLV 84 (143)
T ss_pred ceEEEeccCccccccc-hHHHHHHHHhC--CceEEe--cCCcCCHH-HHHHHHHhcCCCEEEEEeccchHH--HHHHHHH
Confidence 3444443235555543 45667777766 666543 33232222 344433 45567888888886665 6677778
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecce
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (669)
+.|.+.. ..... |++=|+-.-+. ...|++.|..+++..+
T Consensus 85 e~lre~G-----~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 85 EALREAG-----VEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHhC-----CcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 8887653 22222 33335444332 3578899999988764
No 207
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.64 E-value=5.2e+02 Score=27.33 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=67.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh-hCCCeeEEecCCCCCccchhHHhh-----hc-cCCeEEEEEecCCCCCCCh
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEK-----LK-KETLAFFMVATYGDGEPTD 156 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~-~~g~~~~v~dl~~~~~~~~~~~~~-----l~-~~~~vi~~~sTyG~G~~p~ 156 (669)
+.++++||....--+.+++.|.+.+... ...+++..+|..+.+.- ..++.+ +. ..++|++--+.+..+...+
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~-~~~~~~~~t~pff~~~rlVvv~~~~~~~~~~~~ 79 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQA-IQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEE 79 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHH-HHHHHHhcCCCCCCCceEEEEeCchhhccCCHH
Confidence 4689999999999999999988776321 01233444444444310 113332 22 3344544444443343334
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 005924 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (669)
Q Consensus 157 ~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~ 236 (669)
....+.+++.+. ..-.+.||-..+. .. ..+++.+.+++.|...-.. ... .-.++++..|..+..
T Consensus 80 ~~~~L~~~l~~~-------~~~~~li~~~~~~----~d-~r~k~~k~l~k~~~~~~~~--~~~--~~~~~~l~~~i~~~~ 143 (326)
T PRK07452 80 LLAELERTLPLI-------PENTHLLLTNTKK----PD-GRLKSTKLLQKLAEEKEFS--LIP--PWDTEGLKQLVERTA 143 (326)
T ss_pred HHHHHHHHHcCC-------CCCcEEEEEeCCC----cc-hHHHHHHHHHHceeEEEec--CCC--cccHHHHHHHHHHHH
Confidence 455677777652 2234556542211 11 1244556666665422211 111 112355888886543
No 208
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=30.04 E-value=1.2e+02 Score=30.39 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.4
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~I~p~N 340 (669)
+.++|++.+.++. +++.+.|+.++ ..+.|+||.++.|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 4578888888773 68899998765 35899999999998654
No 209
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=29.84 E-value=1e+02 Score=30.85 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 005924 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (669)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hle~di~~~~-~~Y~~GD~l~I~p~N 340 (669)
.++|+.+++++ .+++.+.|+.++.. ..|+||+++.|..++
T Consensus 3 ~~~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQET-----PTVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecC-----CCeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 46788888776 37888999877633 789999999998653
No 210
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=29.82 E-value=1.6e+02 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCC--eeEEecCCCCC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA--AVKVVDLDDYA 126 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~--~~~v~dl~~~~ 126 (669)
+.||+.+.|+-=||+-.++..+.+.|+++ |+ .+....++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~--gi~~~~~~~~v~~~~ 44 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKEL--GIDVDVEQCAVDEIK 44 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHc--CCCceeeeEEecccc
Confidence 46899999999999999999999999988 66 44555555554
No 211
>PRK09004 FMN-binding protein MioC; Provisional
Probab=29.54 E-value=2.2e+02 Score=26.71 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=55.1
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCC--------CCCCCCceEEEEEe---cCcchHHHHHHHHHHHHHHHH--
Q 005924 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDR--------GPWLQQLKFGVFGL---GNRQYEHFNKIGIVLDEELCK-- 206 (669)
Q Consensus 140 ~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~--------~~~l~~~~~avFGl---Gds~Y~~f~~~~k~ld~~L~~-- 206 (669)
++.|+..|.+|+-+ .-|..+.+.+.....+ ...+..-.+.||++ |+-.-+ ..++.+.+.|++
T Consensus 3 ~i~I~ygS~tGnae--~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~~~sT~G~Ge~p---~~~~~f~~~L~~~~ 77 (146)
T PRK09004 3 DITLISGSTLGGAE--YVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLIVTSTHGAGDLP---DNLQPFFEELQEQK 77 (146)
T ss_pred eEEEEEEcCchHHH--HHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEEEECCCCCCCCC---hhHHHHHHHHHhcC
Confidence 46677777775544 4444444554432111 12355566788876 332221 224445455543
Q ss_pred --cCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 207 --QGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 207 --lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
+.+.+..=.|+||.. + +.|..|.+.+-+.|.++
T Consensus 78 ~~l~g~~~aVfGlGds~--Y-~~fc~~~~~ld~~l~~l 112 (146)
T PRK09004 78 PDLSQVRFAAIGIGSSE--Y-DTFCGAIDKLEQLLKAK 112 (146)
T ss_pred CCCCCCEEEEEeecCCC--H-HHHhHHHHHHHHHHHHc
Confidence 556778788999764 4 78999998887777763
No 212
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=29.26 E-value=4.6e+02 Score=27.91 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
+....+|+.+. ...+++++++- .|.|-....+.+.+.+++.|.+.+..
T Consensus 120 ~~~~~~~~~~~------~g~k~vaii~~---d~~~g~~~~~~~~~~~~~~G~~vv~~ 167 (348)
T cd06355 120 IIPAVDWLMSN------KGGKRFYLVGS---DYVYPRTANKILKAQLESLGGEVVGE 167 (348)
T ss_pred HHHHHHHHHhc------cCCCeEEEECC---cchHHHHHHHHHHHHHHHcCCeEEee
Confidence 44566777653 24678999863 24444556788888999999987753
No 213
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=29.18 E-value=2.1e+02 Score=29.61 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.7
Q ss_pred CCCEEEEecCcccchHHHHH
Q 005924 543 SVPIIMVGPGTGLAPFRGFL 562 (669)
Q Consensus 543 ~~piImIa~GTGIAPfrsfl 562 (669)
...|+-||+|+|+.|+.---
T Consensus 45 ~~~IlDlGaG~G~l~L~la~ 64 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQ 64 (248)
T ss_pred CCeEEEecCCcCHHHHHHhc
Confidence 67899999999999986543
No 214
>PRK08105 flavodoxin; Provisional
Probab=29.16 E-value=3.2e+02 Score=25.72 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=52.9
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCC--------CCCC--CCceEEEEEecCcch--HHHHHHHHHHHHHHH--
Q 005924 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDR--------GPWL--QQLKFGVFGLGNRQY--EHFNKIGIVLDEELC-- 205 (669)
Q Consensus 140 ~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~--------~~~l--~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~-- 205 (669)
++.||..|++|+-+ .-|..+.+.+.....+ -..+ ..-...||++. +| +..-..+..+-+.|+
T Consensus 3 ~i~I~YgS~tGnte--~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~s--T~G~Ge~p~~~~~f~~~l~~~ 78 (149)
T PRK08105 3 KVGIFVGTVYGNAL--LVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTS--TTGQGDLPDSIVPLFQALKDT 78 (149)
T ss_pred eEEEEEEcCchHHH--HHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEEC--CCCCCCCChhHHHHHHHHHhc
Confidence 46777788886544 4455555555432111 0112 22356777762 44 111111222222232
Q ss_pred --HcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 206 --KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 206 --~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
.+.+.++.=.|+||.. + +.|..+...+-..|.++
T Consensus 79 ~~~l~~~~~avfGlGds~--Y-~~fc~~~~~ld~~l~~l 114 (149)
T PRK08105 79 AGYQPNLRYGVIALGDSS--Y-DNFCGAGKQFDALLQEQ 114 (149)
T ss_pred CcccCCCEEEEEeeecCC--H-HHHHHHHHHHHHHHHHC
Confidence 3556678888999763 4 78999998887777764
No 215
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.85 E-value=80 Score=30.61 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
..+.|++++|+|+| ..++.+-++|+.+|++.++
T Consensus 32 ~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 32 RELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp S-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred cccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 45999999999944 6789999999999998764
No 216
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=28.83 E-value=1.2e+02 Score=30.85 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=33.1
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~ 341 (669)
|..++|+..++++. ++++++|+.+ ..+.|+||+++.|..++.
T Consensus 4 ~~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 45688988888873 7888888844 468999999999986654
No 217
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.69 E-value=7.3e+02 Score=26.31 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=74.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC-ccc-hhHHhhhccC---CeEEEEEecCC-------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDD-EQYEEKLKKE---TLAFFMVATYG------- 150 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~-~~~-~~~~~~l~~~---~~vi~~~sTyG------- 150 (669)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-. .++ ...+.++.++ +.+++-.|--.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i 109 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDN--GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKV 109 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence 35677777766667888888888888776 7888777775432 111 1122333322 34555555321
Q ss_pred -------------------------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHH
Q 005924 151 -------------------------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (669)
Q Consensus 151 -------------------------~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~ 205 (669)
.+-.|-++..-++.|+... ..++|++++|+|-|+. +++-+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~---i~l~Gk~vvViGrs~i-------VGkPla~lL~ 179 (285)
T PRK14189 110 IEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIG---IPLRGAHAVVIGRSNI-------VGKPMAMLLL 179 (285)
T ss_pred HhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcC---CCCCCCEEEEECCCCc-------cHHHHHHHHH
Confidence 1224556666666666543 2399999999996533 4788888898
Q ss_pred HcCCeEEe
Q 005924 206 KQGGARLV 213 (669)
Q Consensus 206 ~lGa~~i~ 213 (669)
+.||+...
T Consensus 180 ~~~atVt~ 187 (285)
T PRK14189 180 QAGATVTI 187 (285)
T ss_pred HCCCEEEE
Confidence 99998754
No 218
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=28.66 E-value=92 Score=31.50 Aligned_cols=31 Identities=39% Similarity=0.658 Sum_probs=25.2
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
+++++++|.|+| .++..+-+.|.+.|++.+.
T Consensus 21 l~g~~vaIqGfG--------nVG~~~a~~L~~~G~~vV~ 51 (217)
T cd05211 21 LEGLTVAVQGLG--------NVGWGLAKKLAEEGGKVLA 51 (217)
T ss_pred cCCCEEEEECCC--------HHHHHHHHHHHHcCCEEEE
Confidence 899999999965 4567777788889998763
No 219
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=28.58 E-value=88 Score=34.18 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=44.1
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccch-hHHhhhccCCeEEEEEecCCCCC
Q 005924 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGE 153 (669)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~-~~~~~l~~~~~vi~~~sTyG~G~ 153 (669)
++..-++|.|||+++.+.+.|+.|.+ + |+.+.++|+..+.+=+. .+...+.+.+.||++=-.+=.|.
T Consensus 232 ~G~di~Iia~Gs~~~~aleAa~~L~~----~--Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GG 299 (355)
T PTZ00182 232 EGKDVTIVGYGSQVHVALKAAEELAK----E--GISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCG 299 (355)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHh----C--CCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCC
Confidence 34445667799999998888887743 4 67788888776655443 24555667777777644443343
No 220
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.45 E-value=7.5e+02 Score=26.37 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=80.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc--hhHHhhhccC---CeEEEEEecC--------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vi~~~sTy-------- 149 (669)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-..++ ...+.++.++ +.+++-.|--
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i 109 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEML--GLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLI 109 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 45788888888889999999998988877 8999988886432222 1123334333 3566665521
Q ss_pred -----------------------CC---CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHH
Q 005924 150 -----------------------GD---GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (669)
Q Consensus 150 -----------------------G~---G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~ 203 (669)
|+ +-.|-++..-++.|+.... .++|++++|+|-+ +-+++=+...
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~iVGkPla~l 179 (294)
T PRK14187 110 INTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR---NLSGSDAVVIGRS-------NIVGKPMACL 179 (294)
T ss_pred HhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHH
Confidence 22 3356677777777765432 3999999999833 3457888888
Q ss_pred HHHcCCeEE
Q 005924 204 LCKQGGARL 212 (669)
Q Consensus 204 L~~lGa~~i 212 (669)
|.+.||+..
T Consensus 180 L~~~~aTVt 188 (294)
T PRK14187 180 LLGENCTVT 188 (294)
T ss_pred HhhCCCEEE
Confidence 888898865
No 221
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=28.10 E-value=5.9e+02 Score=25.04 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEEEC-CCchHHHHHHHHHHHHHhhhCCCeeEEecCCC
Q 005924 86 VTVFYGT-QTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (669)
Q Consensus 86 v~I~YgS-qtGtte~~A~~la~~l~~~~~g~~~~v~dl~~ 124 (669)
|.+++.. ...--..+.+.+.+.+.++ |+.+.+++.+.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~--g~~~~~~~~~~ 39 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKEL--GVELIVLDAQN 39 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhc--CceEEEECCCC
Confidence 4445532 2334455666677777666 67777776653
No 222
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=27.96 E-value=1.6e+02 Score=30.82 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEecCCC--CCccchhHHhhh-c-cCCe-EEEEEecCCCCCCChhHHHHHHHHhc-CC
Q 005924 96 TAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMDDEQYEEKL-K-KETL-AFFMVATYGDGEPTDNAARFYKWFTE-GN 169 (669)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~--~~~~~~~~~~~l-~-~~~~-vi~~~sTyG~G~~p~~a~~F~~~L~~-~~ 169 (669)
+..++|++|++.+.+. |+.+..+|-+. +|-..---+.-+ . ..++ ||.++-+. ...+...-+|=+.|.+ ..
T Consensus 88 g~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~--~~~~~~~~~lG~al~~~l~ 163 (271)
T cd07373 88 SDTALAEACVTACPEH--GVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL--YHSGEITEKLGAIAADAAK 163 (271)
T ss_pred CCHHHHHHHHHHHHHC--CCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC--CCCHHHHHHHHHHHHHHHH
Confidence 4678899999999877 77776555432 332220011112 1 1222 44433322 1233333334344543 11
Q ss_pred CCCCCCCCceEEEEEecCcch
Q 005924 170 DRGPWLQQLKFGVFGLGNRQY 190 (669)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y 190 (669)
-.+++++|+|+||-+.
T Consensus 164 -----~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 -----DQNKRVAVVGVGGLSG 179 (271)
T ss_pred -----HcCCeEEEEEeccccc
Confidence 1248999999999887
No 223
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=27.93 E-value=1.3e+02 Score=30.21 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.1
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~-~~Y~~GD~l~I~p~N 340 (669)
++.++|+..+++++ +++.++|..+... ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 46788988888873 6888888876532 599999999998654
No 224
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=27.71 E-value=1.2e+02 Score=33.38 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
..+.|++++|+|+| .+++.+.++|+.+|.+.++
T Consensus 112 ~~L~gktvGIIG~G--------~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 112 FSLHDRTVGIVGVG--------NVGRRLQARLEALGIKTLL 144 (378)
T ss_pred CCcCCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 45999999999965 5789999999999998764
No 225
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.55 E-value=11 Score=34.37 Aligned_cols=57 Identities=25% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhh-hccCCeEEEE
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK-LKKETLAFFM 145 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~-l~~~~~vi~~ 145 (669)
..-++|-|||+...+.+.|+.|.+ + |+.+.++|+.-..+-+.+.+.+ +.+.+.++++
T Consensus 10 ~di~iia~G~~~~~al~A~~~L~~----~--Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvv 67 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEAAEELEE----E--GIKAGVIDLRTIKPFDEEALLESLKKTGRVVVV 67 (124)
T ss_dssp SSEEEEEETTHHHHHHHHHHHHHH----T--TCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHS
T ss_pred CCEEEEeehHHHHHHHHHHHHHHH----c--CCceeEEeeEEEecccccchHHHHHHhcccccc
Confidence 344666688887777766666554 5 7888888776555444344444 4444444444
No 226
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=27.50 E-value=69 Score=30.31 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=35.9
Q ss_pred ceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 178 ~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
.+++|+-.||..+ .-++..+..+.++|++.|++........||.+...+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 3688999999776 35666777888899999998655434445433334444444
No 227
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.40 E-value=50 Score=30.96 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=35.9
Q ss_pred eEEEEEecCcch---------HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 179 KFGVFGLGNRQY---------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 179 ~~avFGlGds~Y---------~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
+++|+-.||.-+ .-++..+..+.++|++.|++........||.+.+.+.+++|.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 64 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV 64 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 577888887655 234566788899999999987654444555444555565554
No 228
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.89 E-value=1.2e+02 Score=30.15 Aligned_cols=32 Identities=38% Similarity=0.545 Sum_probs=26.4
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
.++|++++|.|+| .+++.+-+.|.+.|++.+.
T Consensus 25 ~l~gk~v~I~G~G--------~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 25 SLEGKTVAVQGLG--------KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 4899999999977 3577888889999998763
No 229
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.76 E-value=85 Score=27.36 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~ 120 (669)
+++|+++.|+--+|+ -+++.+.+.+.++ |+.+++.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~--gi~~~v~ 37 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEY--GVPVKIA 37 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHC--CCcEEEE
Confidence 468999999988866 5899999999987 7766554
No 230
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=26.67 E-value=1.2e+02 Score=32.55 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=34.1
Q ss_pred hhHHHHhc-CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecC
Q 005924 74 DDEADIAA-GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL 122 (669)
Q Consensus 74 ~~~~~~~~-~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl 122 (669)
+.++++.. ...-|+|+|| -+.++..|+.|++.+.++|+++++.+++=
T Consensus 254 ~ll~~l~~~~~elvTi~~G--~~~~~~~a~~l~~~l~~~~p~~eve~~~G 301 (313)
T PF13684_consen 254 KLLEKLLDEDGELVTIYYG--EDVSEEEAEALAEFLEEKYPDVEVEVYDG 301 (313)
T ss_pred HHHHHhhccCCeEEEEEec--CCCCHHHHHHHHHHHHHHhCCeEEEEEEC
Confidence 34444443 4456999999 45555599999999999998888877653
No 231
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=26.64 E-value=90 Score=31.43 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCC---CccCCCCeEEEecc
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVE 339 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~~~---~~Y~~GD~l~I~p~ 339 (669)
+.++|+..+.++ .++++++|..+... +.|+||.++.|.++
T Consensus 2 ~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 2 HPLTVAEVVRET-----ADAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred ceEEEEEEEecC-----CCeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 356788788775 36788888876532 58999999999976
No 232
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=26.63 E-value=62 Score=38.31 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe-eEEecC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA-VKVVDL 122 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~-~~v~dl 122 (669)
.++++|+++|-.|++..++..|.+.+++. +.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~--~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDA--GLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHc--CCCeeEEEEe
Confidence 56899999999999999999999999876 333 555443
No 233
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.56 E-value=2.3e+02 Score=27.73 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~ 120 (669)
++.++.++ |.++..++.+++.++++||++.+.-.
T Consensus 47 ~~~~vfll-----G~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 47 EKLPIFLY-----GGKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred cCCeEEEE-----CCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 44455544 55666666666677777887765433
No 234
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.16 E-value=3.2e+02 Score=29.78 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=46.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC-ccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
+-++++|+|.+..|- ..++.|.+.+... |.++....+..++ .+-...+.++...+.-.++..++ ++.+..
T Consensus 123 ~wk~vaiiYd~~~~~--~~lq~l~~~~~~~--g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~-----~~~~~~ 193 (371)
T cd06388 123 EWNRFVFLYDTDRGY--SILQAIMEKAGQN--GWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCE-----IERLQN 193 (371)
T ss_pred CceEEEEEecCCccH--HHHHHHHHhhHhc--CCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECC-----HHHHHH
Confidence 567899999988877 4477788877766 6554432222221 11123556666543323333333 256788
Q ss_pred HHHHHhcCC
Q 005924 161 FYKWFTEGN 169 (669)
Q Consensus 161 F~~~L~~~~ 169 (669)
+++...+..
T Consensus 194 il~qa~~~g 202 (371)
T cd06388 194 ILEQIVSVG 202 (371)
T ss_pred HHHHHHhcC
Confidence 888887754
No 235
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.81 E-value=1.8e+02 Score=34.53 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEE
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~ 145 (669)
+..-++|.||++...|.+.|+.|+ +. |+.++|+|+.-..+-|.+++..+.+...++++
T Consensus 504 G~ditIva~G~~v~~aleAa~~L~----~~--Gi~v~VId~~~lkPlD~~~i~sv~k~~~vvvv 561 (641)
T PRK12571 504 GPDVAILSVGAHLHECLDAADLLE----AE--GISVTVADPRFVKPLDEALTDLLVRHHIVVIV 561 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHH----hc--CCCEEEEEcCcCCCcCHHHHHHHhhhCCEEEE
Confidence 444466668888888777777664 34 78899999876666665566666655444444
No 236
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.18 E-value=8.4e+02 Score=25.85 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=82.7
Q ss_pred hhHHHHhcC---CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc-cc-hhHHhhhccC---CeEEEE
Q 005924 74 DDEADIAAG---KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-DD-EQYEEKLKKE---TLAFFM 145 (669)
Q Consensus 74 ~~~~~~~~~---~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~-~~-~~~~~~l~~~---~~vi~~ 145 (669)
+.++++++. ..++.|+....--.+..|++...+.+.+- |+.++++.+.+... ++ ...+.++.++ +.+++-
T Consensus 21 ~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq 98 (284)
T PRK14177 21 ETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKV--GMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQ 98 (284)
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 334444432 35677887777778999999999988877 89999988865422 22 1123334322 466666
Q ss_pred EecC-------------------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHH
Q 005924 146 VATY-------------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF 193 (669)
Q Consensus 146 ~sTy-------------------------------G-~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f 193 (669)
.|-- | .+-.|-++..-++.|+.... .+.|++++|+|-+
T Consensus 99 lPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i---~l~Gk~vvViGrS------- 168 (284)
T PRK14177 99 HPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGI---DVTGKNAVVVGRS------- 168 (284)
T ss_pred CCCCCCCCHHHHHhccCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------
Confidence 6622 1 12346677777777766433 3999999999833
Q ss_pred HHHHHHHHHHHHHcCCeEE
Q 005924 194 NKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 194 ~~~~k~ld~~L~~lGa~~i 212 (669)
+-.+|=+...|.+.||+..
T Consensus 169 ~iVGkPla~lL~~~~atVt 187 (284)
T PRK14177 169 PILGKPMAMLLTEMNATVT 187 (284)
T ss_pred CcchHHHHHHHHHCCCEEE
Confidence 3357788888888888764
No 237
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=25.12 E-value=1.7e+02 Score=29.82 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=13.2
Q ss_pred ECCCchHHHHHHHHHHH
Q 005924 91 GTQTGTAEGFAKALAEE 107 (669)
Q Consensus 91 gSqtGtte~~A~~la~~ 107 (669)
|-+.||++.+|+.|.+.
T Consensus 111 Ge~~gNa~~LaD~Ive~ 127 (260)
T KOG4132|consen 111 GEDAGNAEILADLIVET 127 (260)
T ss_pred ccccccHHHHhHhhhhc
Confidence 56778888888888773
No 238
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=25.09 E-value=1.1e+02 Score=32.92 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=56.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchh-HHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
+..-.+|.||+++..+.+.|+.|+ ++ |+.++++|+-...+-|.+ +...+.+.+.|+++=--+-.|..-..
T Consensus 201 G~ditiia~G~~v~~al~Aa~~L~----~~--Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~--- 271 (327)
T CHL00144 201 GNDITILTYSRMRHHVLQAVKVLV----EK--GYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAE--- 271 (327)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHH---
Confidence 444456668888888888887764 35 788999998877665533 44556677777776544434443333
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCc
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR 188 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds 188 (669)
..+++.+.... ....++.-+|+-|.
T Consensus 272 va~~l~e~~f~---~~~~pv~rl~~~d~ 296 (327)
T CHL00144 272 LIAQINEHLFD---ELDAPIVRLSSQDV 296 (327)
T ss_pred HHHHHHHhchh---hcCCCeEEEccCCC
Confidence 33444332100 01246667776553
No 239
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=25.03 E-value=97 Score=32.91 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCc-cCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCC
Q 005924 325 GIT-YETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILN 398 (669)
Q Consensus 325 ~~~-Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~ 398 (669)
+.+ +++|||+-..+.|...--+.. -.+.++.+.+... -++....... =+|||-..+|+.|+||+.
T Consensus 95 ~vkgfk~Gd~VIp~~a~lGtW~t~~----v~~e~~Li~vd~~----~pl~~AAT~~-VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSANLGTWRTEA----VFSESDLIKVDKD----IPLASAATLS-VNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred CcCccCCCCeEeecCCCCccceeeE----eecccceEEcCCc----CChhhhheec-cCchHHHHHHHHHHhcCC
Confidence 454 999999999999965211100 0122233332110 1111000111 159999999999999975
No 240
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=24.64 E-value=1.6e+02 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.2
Q ss_pred CeEEEEEECCCchHHH--HHHHHHHHHHhhhCCCeeEEecCCC
Q 005924 84 TKVTVFYGTQTGTAEG--FAKALAEEIKARYEKAAVKVVDLDD 124 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~--~A~~la~~l~~~~~g~~~~v~dl~~ 124 (669)
|.|.|++.|.||+.+- =-+++..-|..+ ++..+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcC
Confidence 3588999999999754 345677777777 78888888876
No 241
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=24.59 E-value=1.6e+02 Score=31.54 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=35.2
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 005924 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (669)
Q Consensus 291 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~ 341 (669)
.+.|+.++|+..+.++. +++.++|...+ .+.|+||.++.|..++.
T Consensus 6 ~~~~~~~~V~~i~~~t~-----~v~~l~l~~~~-~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 6 PQCPNRMQVHSIVQETP-----DVWTISLICHD-FYPYRAGQYALVSIRNS 50 (332)
T ss_pred CCCceeEEEEEEEccCC-----CeEEEEEcCCC-CCCcCCCCEEEEEecCC
Confidence 35678899998888773 67888887543 68999999999976654
No 242
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.02 E-value=4e+02 Score=28.30 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=72.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe-cCCCCCccchhHHhhhc-cCCeEEEEEecCCCCCCChhHHHHHHH
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLK-KETLAFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~~~~~~~~~~~l~-~~~~vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
-+.|-|||--+.+--+.|.+.|+++|+...+... |+-....+......++. +.+++|++-+.. ..|..+.++-
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n-----SSNs~rL~ei 233 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN-----SSNSNRLAEI 233 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC-----CccHHHHHHH
Confidence 5777899998888888888999988874433322 23333333322334443 557766665444 2667777665
Q ss_pred HhcCCCC-----------CCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 165 FTEGNDR-----------GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 165 L~~~~~~-----------~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
-++...+ ..||++++..-.-.|-|.-+|- ...+-++|+++|+..+.
T Consensus 234 A~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~l---V~~Vi~~l~~~~~~~v~ 290 (294)
T COG0761 234 AKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWL---VQEVIAKLRELGADTVE 290 (294)
T ss_pred HHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHH---HHHHHHHHHHhcCCcce
Confidence 4432221 3678885544445588887653 45666778888866543
No 243
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=24.01 E-value=2e+02 Score=29.05 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=32.1
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-C-CccCCCCeEEEeccCC
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVENC 341 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~-~~Y~~GD~l~I~p~N~ 341 (669)
-.++|++.+.++ .++.+++|+.++. . +.|+||+++.|...++
T Consensus 7 ~~~~v~~~~~~s-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAES-----EDITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcC-----CCeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 356788888776 3688999987653 2 7999999999996553
No 244
>PLN02928 oxidoreductase family protein
Probab=23.68 E-value=1.6e+02 Score=31.93 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=27.5
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
.+.|++++|+|+| .+++.+-++|+.+|++.++
T Consensus 156 ~l~gktvGIiG~G--------~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 156 TLFGKTVFILGYG--------AIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHhhCCCEEEE
Confidence 4899999999955 6789999999999997764
No 245
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=23.50 E-value=3.7e+02 Score=29.17 Aligned_cols=88 Identities=8% Similarity=0.089 Sum_probs=49.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCC--CCc---cchhHHhhhccCCe-EEEEEecCCCCCCC
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD--YAM---DDEQYEEKLKKETL-AFFMVATYGDGEPT 155 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~--~~~---~~~~~~~~l~~~~~-vi~~~sTyG~G~~p 155 (669)
+-++++|+|.|-+ ....++.|.+.+... +.++....+.. +.. +-...+.+++..+. +|++...+
T Consensus 117 ~wk~vailYdsd~--gl~~lq~l~~~~~~~--g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~------ 186 (370)
T cd06389 117 QWDKFAYLYDSDR--GLSTLQAVLDSAAEK--KWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCER------ 186 (370)
T ss_pred CCcEEEEEecCch--HHHHHHHHHHhhccC--CceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCH------
Confidence 5689999998754 455677777777765 65444322211 111 11224555654433 33333333
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEE-EEE
Q 005924 156 DNAARFYKWFTEGNDRGPWLQQLKFG-VFG 184 (669)
Q Consensus 156 ~~a~~F~~~L~~~~~~~~~l~~~~~a-vFG 184 (669)
+.+..+++...+.. +.+..|. ++|
T Consensus 187 ~~~~~il~qa~~~g-----m~~~~y~~il~ 211 (370)
T cd06389 187 DKVNDIVDQVITIG-----KHVKGYHYIIA 211 (370)
T ss_pred HHHHHHHHHHHHhC-----ccccceEEEEc
Confidence 67888888887754 4455555 444
No 246
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=23.47 E-value=1.2e+02 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=32.0
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~ 234 (669)
+.|+++.|+| |+..+|-+.++|+.+||+... .+. +....+++|.+.
T Consensus 21 l~Gk~vvV~G--------YG~vG~g~A~~lr~~Ga~V~V--~e~----DPi~alqA~~dG 66 (162)
T PF00670_consen 21 LAGKRVVVIG--------YGKVGKGIARALRGLGARVTV--TEI----DPIRALQAAMDG 66 (162)
T ss_dssp -TTSEEEEE----------SHHHHHHHHHHHHTT-EEEE--E-S----SHHHHHHHHHTT
T ss_pred eCCCEEEEeC--------CCcccHHHHHHHhhCCCEEEE--EEC----ChHHHHHhhhcC
Confidence 8999999999 667899999999999998753 323 245667777654
No 247
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.36 E-value=1e+03 Score=26.19 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=80.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc--hhHHhhhccC---CeEEEEEecC--------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vi~~~sTy-------- 149 (669)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-..++ ...+.++.++ +.+++-.|--
T Consensus 103 ~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~--GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i 180 (364)
T PLN02616 103 VPGLAVILVGDRKDSATYVRNKKKACDSV--GINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNI 180 (364)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHH
Confidence 35788888888889999999999999887 8998888876543221 1133344433 4666666621
Q ss_pred -----------------------C---CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHH
Q 005924 150 -----------------------G---DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (669)
Q Consensus 150 -----------------------G---~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~ 203 (669)
| .+-.|-++..-++.|+.... .++|+++.|+|=+ +-++|=+...
T Consensus 181 ~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i---~l~GK~vvVIGRS-------~iVGkPLa~L 250 (364)
T PLN02616 181 LNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNV---EIKGKRAVVIGRS-------NIVGMPAALL 250 (364)
T ss_pred HhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccccHHHHHH
Confidence 1 22356677777777765433 3999999999822 3457888888
Q ss_pred HHHcCCeEE
Q 005924 204 LCKQGGARL 212 (669)
Q Consensus 204 L~~lGa~~i 212 (669)
|.+.||+..
T Consensus 251 L~~~~ATVT 259 (364)
T PLN02616 251 LQREDATVS 259 (364)
T ss_pred HHHCCCeEE
Confidence 888898764
No 248
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.26 E-value=9.1e+02 Score=25.57 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=78.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhh---hccC---CeEEEEEecC-------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK---LKKE---TLAFFMVATY------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~---l~~~---~~vi~~~sTy------- 149 (669)
..++.|+....--.+..|++...+.+++- |+.++++.+.+--. .++++.. +.++ +.+++-.|--
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t-~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~ 106 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEV--GITSVEHHLPATTT-QAELLALIARLNADPAVHGILVQLPLPKHVDERA 106 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 45688888777888899999888888877 88888888754322 1123333 3322 4666665521
Q ss_pred ------------------------CC-C-CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHH
Q 005924 150 ------------------------GD-G-EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (669)
Q Consensus 150 ------------------------G~-G-~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~ 203 (669)
|+ + -.|-++..-++.|+...- .++|++++|+|=+ +-.+|=+...
T Consensus 107 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~~i---~l~Gk~vvViGrS-------~iVGkPla~l 176 (282)
T PRK14182 107 VLDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARV---DPKGKRALVVGRS-------NIVGKPMAMM 176 (282)
T ss_pred HHhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHH
Confidence 21 2 256777777777776433 3999999999833 3357888888
Q ss_pred HHHcCCeEEe
Q 005924 204 LCKQGGARLV 213 (669)
Q Consensus 204 L~~lGa~~i~ 213 (669)
|.+.||+...
T Consensus 177 L~~~~AtVti 186 (282)
T PRK14182 177 LLERHATVTI 186 (282)
T ss_pred HHHCCCEEEE
Confidence 8888987643
No 249
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=23.25 E-value=1.2e+02 Score=33.28 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhC-CCeeEEecC
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYE-KAAVKVVDL 122 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~-g~~~~v~dl 122 (669)
.+++|+|+.+|..|-=...|++|++++.++.+ +.++.++|+
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~ 45 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDL 45 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeeh
Confidence 46789999998876678899999999987622 245665554
No 250
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=23.13 E-value=1.9e+02 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEEEECCCchHHHH--HHHHHHHHHhhhCCCeeEEecCCC
Q 005924 86 VTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDD 124 (669)
Q Consensus 86 v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~~~v~dl~~ 124 (669)
|.|+|.|++|+.+-. .+++..-|..+ ++..+-+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC--CCceEEEecCC
Confidence 789999999987654 45677777777 78888888874
No 251
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.12 E-value=2.6e+02 Score=33.26 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhCCCeeEEe---cCCCCCcc--chhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 005924 100 FAKALAEEIKARYEKAAVKVV---DLDDYAMD--DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (669)
Q Consensus 100 ~A~~la~~l~~~~~g~~~~v~---dl~~~~~~--~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~ 174 (669)
-+..+++.|.+. |..+-.+ ++...+.. ....+..+.+++.|||.|++- ...|++.+... +
T Consensus 14 qa~~la~~L~~~--G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nA--------V~~~~~~l~~~-----~ 78 (656)
T PRK06975 14 QSAALAAQLAAA--GLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNA--------VDRALARLDAI-----W 78 (656)
T ss_pred HHHHHHHHHHHc--CCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHH--------HHHHHHHHHhh-----C
Confidence 345555666655 5555443 33222111 112345577889988887544 55577887543 2
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCe
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 210 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 210 (669)
+.++++++.| +.-.+.|.+.|..
T Consensus 79 ~~~~~i~AVG-------------~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 79 PHALPVAVVG-------------PGSVAALARHGIA 101 (656)
T ss_pred ccCCeEEEEC-------------HHHHHHHHHcCCC
Confidence 4567888877 3444567778875
No 252
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.89 E-value=6e+02 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=16.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhh
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKAR 111 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (669)
+..++.++++..........+.+.+.+.+.
T Consensus 123 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
T cd01391 123 GWKRVALIYGDDGAYGRERLEGFKAALKKA 152 (269)
T ss_pred CCceEEEEecCCcchhhHHHHHHHHHHHhc
Confidence 356677777655433444445555555543
No 253
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.70 E-value=2.1e+02 Score=26.45 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=36.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE--EecCCCCCccc-hh-HHhhhccCCeEEEEEe
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK--VVDLDDYAMDD-EQ-YEEKLKKETLAFFMVA 147 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~--v~dl~~~~~~~-~~-~~~~l~~~~~vi~~~s 147 (669)
++|.|.|..-.-.=......|++.|++.+| ++|. ..+..+....+ .. ....+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g-~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG-IDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC-CceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 479999998666667888999999986543 4442 12222221111 11 2233556676666666
No 254
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=22.61 E-value=3.1e+02 Score=28.39 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc---CCeEEEEEecCCCCCCChhHHHHHH---HHhcCC
Q 005924 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK---ETLAFFMVATYGDGEPTDNAARFYK---WFTEGN 169 (669)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~---~~~vi~~~sTyG~G~~p~~a~~F~~---~L~~~~ 169 (669)
...++|++|++.+.+. |+.+....--..|-.----+.-+.. ..+|-+.+.+.... -.+.++.++ -|....
T Consensus 94 g~~~la~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p--~~~~~~~~~lG~aL~~~~ 169 (272)
T PF02900_consen 94 GDPELAERIAEHLRKA--GFDVAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPP--SPSPERHYRLGRALRKAR 169 (272)
T ss_dssp B-HHHHHHHHHHHHHT--TS-EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS---TS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCEEeccCcCCccccceeeeecccccCcceeeeEeeccccc--CCCHHHHHHHHHHHHHHH
Confidence 3578999999999887 7765442111111111000011222 12343444442222 233444444 354421
Q ss_pred CCCCCCCCceEEEEEecCcchH-----H--HHH-HHHHHHHHHHHc
Q 005924 170 DRGPWLQQLKFGVFGLGNRQYE-----H--FNK-IGIVLDEELCKQ 207 (669)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y~-----~--f~~-~~k~ld~~L~~l 207 (669)
.+ . +.+++|+|.|+.+.. + +.. .++.+|+++.++
T Consensus 170 ~~---~-~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~~ 211 (272)
T PF02900_consen 170 ES---S-DERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILDA 211 (272)
T ss_dssp HT---S-GGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHCC
T ss_pred Hh---c-CCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHHH
Confidence 11 2 789999999998861 2 222 677888877664
No 255
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=22.54 E-value=9.6e+02 Score=25.61 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=77.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCC-CCCccc-hhHHhhhccC---CeEEEEEecC--------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD-DYAMDD-EQYEEKLKKE---TLAFFMVATY-------- 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~-~~~~~~-~~~~~~l~~~---~~vi~~~sTy-------- 149 (669)
..++.|+.-..--.+..|++...+.+.+- |+.++++.+. +...++ ...+.++.++ +.+++-.|--
T Consensus 39 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i 116 (299)
T PLN02516 39 VPGLAVVIVGSRKDSQTYVNMKRKACAEV--GIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKI 116 (299)
T ss_pred CCeEEEEEECCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHH
Confidence 35677777777888899999888888877 8888888885 332222 1122333322 3566555521
Q ss_pred -----------------------C---CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHH
Q 005924 150 -----------------------G---DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (669)
Q Consensus 150 -----------------------G---~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~ 203 (669)
| .+-.|-++..-+++|+... ..++|+++.|+|=+ +-++|=+...
T Consensus 117 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~---i~l~Gk~vvVIGRS-------~iVGkPla~l 186 (299)
T PLN02516 117 LNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG---IPIKGKKAVVVGRS-------NIVGLPVSLL 186 (299)
T ss_pred HhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC---CCCCCCEEEEECCC-------ccchHHHHHH
Confidence 1 1235777777777776543 34999999999833 3457888888
Q ss_pred HHHcCCeEE
Q 005924 204 LCKQGGARL 212 (669)
Q Consensus 204 L~~lGa~~i 212 (669)
|.+.||+..
T Consensus 187 L~~~~ATVt 195 (299)
T PLN02516 187 LLKADATVT 195 (299)
T ss_pred HHHCCCEEE
Confidence 888898764
No 256
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.13 E-value=9.6e+02 Score=25.43 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=75.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhh---hccC---CeEEEEEecCC------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK---LKKE---TLAFFMVATYG------ 150 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~---l~~~---~~vi~~~sTyG------ 150 (669)
..++.|+.-..--.++.|++...+.+++- |+.++++.+.+...+ ++++.. +.++ +.+++-.|--.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~-~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~ 108 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKI--GMISEIVHLEETATE-EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQK 108 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 45677777777778888888888888876 788888877654222 223332 3222 35666555331
Q ss_pred --------------------------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHH
Q 005924 151 --------------------------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (669)
Q Consensus 151 --------------------------~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (669)
.+-.|-++..-++.|+... ..++|+++.|.|-| +-+++-+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~---i~l~Gk~vvVIGrs-------~~VG~pla~lL 178 (286)
T PRK14175 109 ILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHAD---IDLEGKNAVVIGRS-------HIVGQPVSKLL 178 (286)
T ss_pred HHhccCcccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcC---CCCCCCEEEEECCC-------chhHHHHHHHH
Confidence 1224555665666665543 23999999999954 22578888888
Q ss_pred HHcCCeEE
Q 005924 205 CKQGGARL 212 (669)
Q Consensus 205 ~~lGa~~i 212 (669)
...||+..
T Consensus 179 ~~~gatVt 186 (286)
T PRK14175 179 LQKNASVT 186 (286)
T ss_pred HHCCCeEE
Confidence 88998865
No 257
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=22.09 E-value=1.5e+02 Score=29.49 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=28.9
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
+|+..+.++ .++++++|..++ .+.|+||.++.|..++
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 455566655 378999998765 7899999999999765
No 258
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=22.07 E-value=7.3e+02 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHhcccCCCEEEEeCCchhhHHHHHHHHH
Q 005924 631 AAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 662 (669)
Q Consensus 631 ~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~ 662 (669)
...+..+|.++|.+|++=+.......+.+.+.
T Consensus 115 l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 115 LKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 34566778899999988775555555555554
No 259
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=21.96 E-value=3.5e+02 Score=26.95 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH-HHhcCCCC
Q 005924 93 QTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK-WFTEGNDR 171 (669)
Q Consensus 93 qtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~-~L~~~~~~ 171 (669)
+.||.-..|-.++..+.+. . ...|+.+- ...++.++|.+. +|+|+|.++.=.. +....
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~--~-------~~~~~a~~------kgdyrP~vfLiT---DG~PtD~w~~~~~~~~~~~--- 134 (207)
T COG4245 76 QGGTPLGAALTLALDMIEE--R-------KRKYDANG------KGDYRPWVFLIT---DGEPTDDWQAGAALVFQGE--- 134 (207)
T ss_pred CCCCchHHHHHHHHHHHHH--H-------HhhcccCC------ccccceEEEEec---CCCcchHHHhHHHHhhhcc---
Confidence 3666666666655555433 1 12344443 456677777764 8999998764322 22222
Q ss_pred CCCCCCceEEEEEecCc
Q 005924 172 GPWLQQLKFGVFGLGNR 188 (669)
Q Consensus 172 ~~~l~~~~~avFGlGds 188 (669)
=..++++.|++|=+
T Consensus 135 ---~~~k~v~a~~~G~~ 148 (207)
T COG4245 135 ---RRAKSVAAFSVGVQ 148 (207)
T ss_pred ---cccceEEEEEeccc
Confidence 23577888888744
No 260
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=21.94 E-value=6.2e+02 Score=27.37 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=48.4
Q ss_pred CCCeEEEEEECCCch---HHHHHHHHHHHHHhhhCCCeeEEecCCCCC--ccchhHHhhhccCCeEEEEEecCCCCCCCh
Q 005924 82 GKTKVTVFYGTQTGT---AEGFAKALAEEIKARYEKAAVKVVDLDDYA--MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (669)
Q Consensus 82 ~~~~v~I~YgSqtGt---te~~A~~la~~l~~~~~g~~~~v~dl~~~~--~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~ 156 (669)
+-+++.|+|....+. ....++.+.+.+++. |..+....+...+ .+-...+.++....-+|++.... +
T Consensus 141 ~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~vii~~~~~------~ 212 (396)
T cd06373 141 NWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEE--NITVSDFPFDEDKELDDYKELLRDISKKGRVVIMCASP------D 212 (396)
T ss_pred CCeEEEEEEECCCCCcchHHHHHHHHHHHHhhc--CceeeEEeecCCccccCHHHHHHHHHhcCcEEEEecCH------H
Confidence 457899998764432 344566677777655 5544332222211 11123555565443344433322 5
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEEEEEe
Q 005924 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (669)
Q Consensus 157 ~a~~F~~~L~~~~~~~~~l~~~~~avFGl 185 (669)
.+..|++.+.+.. +....|..+.+
T Consensus 213 ~~~~~~~qa~~~g-----~~~~~yv~i~~ 236 (396)
T cd06373 213 TVREIMLAAHRLG-----LTSGEYVFFNI 236 (396)
T ss_pred HHHHHHHHHHHcC-----CCCCcEEEEEE
Confidence 6777887776654 44556665553
No 261
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=21.94 E-value=1.7e+02 Score=31.10 Aligned_cols=104 Identities=20% Similarity=0.321 Sum_probs=54.8
Q ss_pred CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCccc
Q 005924 543 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEY 622 (669)
Q Consensus 543 ~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~y 622 (669)
...++-||||||| +|+.-.++ |. .+ .+|+-... ...+.-.++...++.-.++.+..+.+..+..|
T Consensus 162 g~~vLDvG~GSGI---LaiaA~kl-----GA--~~---v~a~DiDp--~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~ 226 (295)
T PF06325_consen 162 GKRVLDVGCGSGI---LAIAAAKL-----GA--KK---VVAIDIDP--LAVEAARENAELNGVEDRIEVSLSEDLVEGKF 226 (295)
T ss_dssp TSEEEEES-TTSH---HHHHHHHT-----TB--SE---EEEEESSC--HHHHHHHHHHHHTT-TTCEEESCTSCTCCS-E
T ss_pred CCEEEEeCCcHHH---HHHHHHHc-----CC--Ce---EEEecCCH--HHHHHHHHHHHHcCCCeeEEEEEecccccccC
Confidence 3589999999998 55553322 21 22 35665532 23333344444444433343322222222222
Q ss_pred -------ccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHH
Q 005924 623 -------VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL 661 (669)
Q Consensus 623 -------Vq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L 661 (669)
+.+.+..-...+.+++.++|.+.++|=-..-...|.+++
T Consensus 227 dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 227 DLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp EEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence 234455555666677888999999997555555555555
No 262
>PRK04148 hypothetical protein; Provisional
Probab=21.89 E-value=1.6e+02 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
.+.+||.+.-.. .+++++.++|+| +- ..+...|.++|.+.+
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~G-fG--------~~vA~~L~~~G~~Vi 43 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIG-FY--------FKVAKKLKESGFDVI 43 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEec-CC--------HHHHHHHHHCCCEEE
Confidence 455666553222 457899999999 21 233456778887654
No 263
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=21.89 E-value=1.8e+02 Score=29.40 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=31.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
+.++|+...+++. ++++++|+.++....|+||.++-|..++
T Consensus 18 ~~~~v~~i~~~~~-----~~~~i~l~~~~~~~~~~pGQ~i~l~~~~ 58 (243)
T cd06216 18 LRARVVAVRPETA-----DMVTLTLRPNRGWPGHRAGQHVRLGVEI 58 (243)
T ss_pred eEEEEEEEEEcCC-----CcEEEEEecCCCCCCcCCCceEEEEEEE
Confidence 3578888877753 7888999876545689999999998543
No 264
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=21.84 E-value=3.1e+02 Score=31.90 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc-CCCCCCCCC
Q 005924 98 EGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE-GNDRGPWLQ 176 (669)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~-~~~~~~~l~ 176 (669)
..|.+++.+.++++||. -++.++|+...+ -..-+.++.-- .+++ +-+...++.--+.-|.+ ....+..|+
T Consensus 226 ~~f~defv~av~~~~P~---~~Iq~EDf~~~n--af~iL~kyr~~---i~~F-nDDiQGTaaV~lAgll~Alr~~g~~l~ 296 (559)
T PTZ00317 226 YELLDEFMEAVSSRWPN---AVVQFEDFSNNH--CFDLLERYQNK---YRCF-NDDIQGTGAVIAAGFLNALKLSGVPPE 296 (559)
T ss_pred HHHHHHHHHHHHHhCCC---eEEehhhcCCcc--HHHHHHHhccC---CCEe-cccchhHHHHHHHHHHHHHHHhCCChh
Confidence 34567777778888874 367788887665 22223333211 4556 44555554433333221 111123489
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHHHcCC
Q 005924 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 209 (669)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa 209 (669)
..++.+||.| .--..+++.+-+.|.+.|.
T Consensus 297 d~riv~~GAG----sAgiGia~ll~~~m~~~Gl 325 (559)
T PTZ00317 297 EQRIVFFGAG----SAAIGVANNIADLAAEYGV 325 (559)
T ss_pred hcEEEEECCC----HHHHHHHHHHHHHHHHcCC
Confidence 9999999988 4445678888888888888
No 265
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=21.78 E-value=1.6e+02 Score=32.26 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=52.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchh-HHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
+..-++|.||++...+.+.|+.|. ++ |+.++++|+....+=|.+ +...+.+.+.||++=-.+-.|.. ...
T Consensus 228 G~dvtIia~G~~v~~Al~Aa~~L~----~~--GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGl---Gs~ 298 (356)
T PLN02683 228 GKDVTIVAFSKMVGYALKAAEILA----KE--GISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGV---GAE 298 (356)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCH---HHH
Confidence 444455667877777777776663 35 788999998777655533 33445567777766444433332 233
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecC
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGd 187 (669)
..+++.+...+ +-..++.-+|+=|
T Consensus 299 Va~~l~e~~f~---~~~~~v~rlg~~d 322 (356)
T PLN02683 299 ICASVVEESFD---YLDAPVERIAGAD 322 (356)
T ss_pred HHHHHHHhchh---ccCCCeEEeccCC
Confidence 44444432100 1123566666544
No 266
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=21.49 E-value=3.1e+02 Score=29.19 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc--hhHHhhhcc-CCe-EEEEEec----C-CCCCCChhHHHHHHHHh
Q 005924 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKK-ETL-AFFMVAT----Y-GDGEPTDNAARFYKWFT 166 (669)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~-~~~-vi~~~sT----y-G~G~~p~~a~~F~~~L~ 166 (669)
+..++|++|++.+.+. |+.+...+-.+...+. ---+.-+.. .++ +|-++.. + ....++....+|=+.|.
T Consensus 96 gd~eLA~~i~~~~~~~--Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~ 173 (294)
T cd07372 96 VDVELAEACCEEGRKA--GLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATR 173 (294)
T ss_pred CCHHHHHHHHHHHHHC--CCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHH
Confidence 4788999999999877 7766543333222221 000111222 222 3333211 1 11122233333333444
Q ss_pred cCCCCCCCCCCceEEEEEecCcchHH----------HHH------HHHHHHHHHHHc
Q 005924 167 EGNDRGPWLQQLKFGVFGLGNRQYEH----------FNK------IGIVLDEELCKQ 207 (669)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds~Y~~----------f~~------~~k~ld~~L~~l 207 (669)
+... -.++|++++|+||-+... |.. .++++|+++.++
T Consensus 174 ~al~----~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~ 226 (294)
T cd07372 174 EAIR----KTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIEL 226 (294)
T ss_pred HHHH----hcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHH
Confidence 4111 136899999999888753 322 567777776554
No 267
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=21.35 E-value=3.9e+02 Score=23.94 Aligned_cols=98 Identities=23% Similarity=0.334 Sum_probs=54.9
Q ss_pred CEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCccccc
Q 005924 545 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 624 (669)
Q Consensus 545 piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq 624 (669)
.++|+|=-|++--+.+++++.- ...+...|+-..+.. |..+ |.. ....++... .|+.. -.+
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp-------~~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv-~r~~~---~~~ 63 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALP-------ADAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWV-PRDGP---AAQ 63 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS--------TT-EEEEEEEESSGG-G--------------TEEEEEEE-E-SS-----TT
T ss_pred eEEEEeccccHHHHHHHHHhCC-------CCCeEEEEEEECChH-hccc---CCC----CCCCEEEEE-eCCCC---Cch
Confidence 5789999999988999997752 346677777777766 5332 222 333344433 45543 011
Q ss_pred chhHHhHHHHHhcc--cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 625 HKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 625 ~~l~~~~~~i~~ll--~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
... -.+.+.++. ..+.+++++|- ..|++.+++.|++-
T Consensus 64 ~~~--l~~al~~~~~~~~~~~vW~AgE-~~~~r~lR~~l~~~ 102 (119)
T PF04954_consen 64 GSA--LADALRDLPLPAGDGYVWVAGE-ASAVRALRRHLREE 102 (119)
T ss_dssp -HH--HHHHHTTS---SS-EEEEEEEE-HHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhhccCCCeEEEEEec-HHHHHHHHHHHHHh
Confidence 111 111222222 34689999999 78999999998743
No 268
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=21.29 E-value=4.6e+02 Score=28.59 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=46.1
Q ss_pred CCCeEE-EEEECCCchHHH---HHHHHHHHHHhhhCCCeeEEecCCCCC-ccchhHHhhhccCCeEEEEEecCCCCCCCh
Q 005924 82 GKTKVT-VFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (669)
Q Consensus 82 ~~~~v~-I~YgSqtGtte~---~A~~la~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~ 156 (669)
+-+++. |+|...++..+. .++.+.+.+.+. |+++......+.+ .+-...+.++....-+|+++..+ +
T Consensus 142 ~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~~iii~~~~~------~ 213 (405)
T cd06385 142 GWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKN--NITVVDLVFEEDDLINYTTLLQDIKQKGRVIYVCCSP------D 213 (405)
T ss_pred CCeEEEEEEEecCcccccchHHHHHHHHHHHHhC--CeEEEEeeccCCchhhHHHHHHHHhhcceEEEEeCCH------H
Confidence 334555 667666543222 466777777655 5554332222111 11122555555444455444333 4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEEEEEe
Q 005924 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (669)
Q Consensus 157 ~a~~F~~~L~~~~~~~~~l~~~~~avFGl 185 (669)
.+..|+....+.. +.+..|+.|+.
T Consensus 214 ~~~~i~~~a~~~g-----~~~~~y~~i~~ 237 (405)
T cd06385 214 IFRRLMLQFWREG-----LPSEDYVFFYI 237 (405)
T ss_pred HHHHHHHHHHHcC-----CCCCcEEEEEe
Confidence 5666776665543 55566777764
No 269
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.25 E-value=5.7e+02 Score=25.46 Aligned_cols=93 Identities=27% Similarity=0.268 Sum_probs=50.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe-cCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.+++.|+|+... ..+..++.+.+.+.+. |.++... .+..-..+....+..+...+.-++++.+.+ ..+..|
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~ 206 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKL--GGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYG-----GDAALF 206 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHc--CCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEcccc-----chHHHH
Confidence 578999987654 6677888888888766 5443221 111111111224444554432222222331 456778
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYE 191 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~ 191 (669)
++.+... |....++|+......
T Consensus 207 ~~~~~~~--------g~~~~~~~~~~~~~~ 228 (298)
T cd06268 207 LKQAREA--------GLKVPIVGGDGAAAP 228 (298)
T ss_pred HHHHHHc--------CCCCcEEecCccCCH
Confidence 8888764 336777886655543
No 270
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=21.24 E-value=3e+02 Score=29.33 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCCeEEEEEECCCchH-HHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEE
Q 005924 82 GKTKVTVFYGTQTGTA-EGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtt-e~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~ 145 (669)
+.+.+.|+.||..|.. ..++++|.+.++++ |.+.-++-+.+.+++. +..+.+-+..|++
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~--gkk~y~~~~~~i~~~k---L~nf~eid~fV~~ 267 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKKA--GKKSYTLSVGEINPAK---LANFPEIDAFVQI 267 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHHT--T-EEEEEEESS--GGG---GTTS---SEEEE-
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHHc--CCEEEEEEECCCCHHH---HhcCcccCEEEEe
Confidence 5678999999998865 56789999999988 8888888888888877 4445545554444
No 271
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.06 E-value=4.3e+02 Score=27.52 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc-C--CeEEEEEecCCCCCCChhHHHHHH---HHhcCC
Q 005924 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-E--TLAFFMVATYGDGEPTDNAARFYK---WFTEGN 169 (669)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~--~~vi~~~sTyG~G~~p~~a~~F~~---~L~~~~ 169 (669)
.-.++|+.|++.+.+. |+.+...+--..|-..---+.-+.. . .+|-+...++... ....++.++ .|.+..
T Consensus 88 gd~~LA~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p--~~~~~~~~~lG~al~~~i 163 (268)
T cd07367 88 GHREFARAFVRQAAED--GFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDP--APSPRRCWALGKVLAQYV 163 (268)
T ss_pred CCHHHHHHHHHHHHHc--CCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCC--CCCHHHHHHHHHHHHHHH
Confidence 3466999999999877 7755433211122111000111221 2 2333333333222 223444443 344321
Q ss_pred CCCCCCCCceEEEEEecCcchH
Q 005924 170 DRGPWLQQLKFGVFGLGNRQYE 191 (669)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y~ 191 (669)
.+ .+-.+++++|+|+|+-++.
T Consensus 164 ~~-~~~~d~rV~iiaSGgLSH~ 184 (268)
T cd07367 164 EK-RRPAGERVAVIAAGGLSHW 184 (268)
T ss_pred Hh-cCCCCCcEEEEEcccccCC
Confidence 00 0015789999999999873
No 272
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=21.02 E-value=2e+02 Score=28.71 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=30.5
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
.++|++.+.++. +++.++|..+. .+.|+||+++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLDR-PIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecCC-CCCcCCCCEEEEEeCC
Confidence 477888888863 78888887643 6799999999998754
No 273
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=20.85 E-value=6.5e+02 Score=23.45 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEECCCchHHHHHHHHHHHHHhhhCCCeeE-EecC-CCCCccchhHHhhhc---cCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 89 FYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDL-DDYAMDDEQYEEKLK---KETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 89 ~YgSqtGtte~~A~~la~~l~~~~~g~~~~-v~dl-~~~~~~~~~~~~~l~---~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
-+-||+|+ ++..+...+.++ |+-+. ++.+ ++.|.+..++++.+. +.+.|++..-..++ .++|.+
T Consensus 5 alisQSG~---~~~~~~~~~~~~--g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d------~~~f~~ 73 (138)
T PF13607_consen 5 ALISQSGA---LGTAILDWAQDR--GIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGD------GRRFLE 73 (138)
T ss_dssp EEEES-HH---HHHHHHHHHHHT--T-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-------HHHHHH
T ss_pred EEEECCHH---HHHHHHHHHHHc--CCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCC------HHHHHH
Confidence 34488886 455566666665 54443 2222 222333223555554 44677777766644 578999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcch------HHHHH---HHHHHHHHHHHcCCeEEec
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY------EHFNK---IGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y------~~f~~---~~k~ld~~L~~lGa~~i~~ 214 (669)
...... .+ |.+.++=.|-+.- .|-.. --+.++..|++.|+.++..
T Consensus 74 ~~~~a~-----~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~~ 127 (138)
T PF13607_consen 74 AARRAA-----RR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVDD 127 (138)
T ss_dssp HHHHHC-----CC-S-EEEEE---------------------HHHHHHHHHHCTEEEESS
T ss_pred HHHHHh-----cC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEECC
Confidence 887754 33 7888887775332 23222 2367888899999887743
No 274
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=20.77 E-value=1.8e+02 Score=31.07 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=33.3
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~I~p~N 340 (669)
.+.++|+..+.++ .++++++|+.++ ..+.|+||.++.|..++
T Consensus 102 ~~~~~V~~~~~~~-----~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 102 KLPCRVASLERVA-----GDVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEEEEEcCC-----CcEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 3568888888776 378899998864 35899999999998765
No 275
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.47 E-value=73 Score=29.29 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=31.4
Q ss_pred EEEecCcchH---HHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 182 VFGLGNRQYE---HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 182 vFGlGds~Y~---~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
|+-.||.-.. -++..+..+.++|++.|++........||.+.+.+.+.+|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~ 55 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL 55 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 4455664431 14566778889999999986654444555434555555554
No 276
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.26 E-value=1.1e+03 Score=25.25 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-hhHHhhhc--cCCeEEEEEecCCCCCCChhH
Q 005924 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLK--KETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a 158 (669)
...|.+++.+.++ ---.+.+.|.+.+.+. |+.+-+.+.++ +.+. ..++..+. ..+.+|+.. +. ..+
T Consensus 58 s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~-~~----~~~-- 127 (333)
T COG1609 58 TKTIGLVVPDITNPFFAEILKGIEEAAREA--GYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLG-ER----PND-- 127 (333)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEec-CC----CCH--
Confidence 3457777776666 4556677788888877 88888777665 3332 23444444 345666655 22 112
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCc--ch----HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNR--QY----EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds--~Y----~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
.+.+++... +..+.+++--.. .+ -..-.+++..-++|.++|.+++.=++-..+.....+..+-|+
T Consensus 128 -~~~~~l~~~--------~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~ 198 (333)
T COG1609 128 -SLLELLAAA--------GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYR 198 (333)
T ss_pred -HHHHHHHhc--------CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHH
Confidence 245555542 456666663111 11 233456788889999999999876554443334567777776
Q ss_pred HH
Q 005924 233 EL 234 (669)
Q Consensus 233 ~~ 234 (669)
+.
T Consensus 199 ~a 200 (333)
T COG1609 199 AA 200 (333)
T ss_pred HH
Confidence 43
No 277
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.16 E-value=2.5e+02 Score=25.26 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc----cCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCC
Q 005924 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK----KETLAFFMVATYGDGEPTDNAARFYKWFTEGNDR 171 (669)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~----~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~ 171 (669)
+..+++.++.+.|.++ |.++-.++...-..........+. .-++++++++ |+.....++.+...
T Consensus 11 ~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~-------~~~~~~~v~~~~~~--- 78 (116)
T PF13380_consen 11 NPGKFGYRVLRNLKAA--GYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP-------PDKVPEIVDEAAAL--- 78 (116)
T ss_dssp STTSHHHHHHHHHHHT--T-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S--------HHHHHHHHHHHHHH---
T ss_pred CCCChHHHHHHHHHhC--CCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC-------HHHHHHHHHHHHHc---
Confidence 5567899999999886 666666654432211111111122 3367777654 44566677776652
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEeccee
Q 005924 172 GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (669)
Q Consensus 172 ~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~ 217 (669)
|.+.++|-.| .....+.+.+++.|.+.++|-+.
T Consensus 79 -----g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 79 -----GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp -----T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-H
T ss_pred -----CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCcc
Confidence 5778888766 23466777788899988877543
No 278
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.14 E-value=7.3e+02 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 156 ~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
..+..+.+++.+. ...++++++. .| +.+.......+.+.+++.|.+.+..
T Consensus 120 ~~~~~~~~~~~~~------~g~~~v~iv~-~~--~~~g~~~~~~~~~~~~~~G~~vv~~ 169 (343)
T PF13458_consen 120 QQAAALAEYLAKK------LGAKKVAIVY-PD--DPYGRSLAEAFRKALEAAGGKVVGE 169 (343)
T ss_dssp HHHHHHHHHHHHT------TTTSEEEEEE-ES--SHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHH------cCCcEEEEEe-cC--chhhhHHHHHHHHHHhhcCceeccc
Confidence 4466777877553 3468999998 33 3344556778889999999996543
No 279
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.09 E-value=1.5e+02 Score=32.04 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (669)
++++|+|+++|..|--...|++|+++|.++ |..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~--g~~ 35 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK--GIK 35 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc--CCC
Confidence 467899999998668889999999999877 543
No 280
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.09 E-value=1.7e+02 Score=32.44 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
..+.|++++|+|+| .+++.+.++|+.+|.+.++
T Consensus 112 ~~l~gktvGIIG~G--------~IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 112 VDLAERTYGVVGAG--------HVGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred CCcCcCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 45999999999966 4688999999999998753
No 281
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.04 E-value=5.2e+02 Score=27.43 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=44.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE---EecCCCCCccchhHHhhhccC--CeEEEEEecCCCCCCChh
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKE--TLAFFMVATYGDGEPTDN 157 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~---v~dl~~~~~~~~~~~~~l~~~--~~vi~~~sTyG~G~~p~~ 157 (669)
.+++.|+|.. +.-.+..++.+.+.+.+. |.++- .++....|... .+.++.+. +.|++. ... .+
T Consensus 138 ~~~v~ii~~~-~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~d~s~--~i~~i~~~~~d~v~~~-~~~------~~ 205 (347)
T cd06335 138 FKKVALLLDN-TGWGRSNRKDLTAALAAR--GLKPVAVEWFNWGDKDMTA--QLLRAKAAGADAIIIV-GNG------PE 205 (347)
T ss_pred CCeEEEEecc-CchhhhHHHHHHHHHHHc--CCeeEEEeeecCCCccHHH--HHHHHHhCCCCEEEEE-ecC------hH
Confidence 5789999865 444567788888888876 55532 22333333332 55556544 344443 222 35
Q ss_pred HHHHHHHHhcCC
Q 005924 158 AARFYKWFTEGN 169 (669)
Q Consensus 158 a~~F~~~L~~~~ 169 (669)
+..|++.+....
T Consensus 206 ~~~~~~~~~~~g 217 (347)
T cd06335 206 GAQIANGMAKLG 217 (347)
T ss_pred HHHHHHHHHHcC
Confidence 556888887643
Done!