Query 005924
Match_columns 669
No_of_seqs 401 out of 3216
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 5E-111 2E-115 966.0 61.7 576 71-668 6-591 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 2E-106 7E-111 937.5 58.7 570 70-668 36-656 (682)
3 1tll_A Nitric-oxide synthase, 100.0 1E-100 3E-105 889.7 57.3 560 80-667 8-627 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 4.6E-81 1.6E-85 690.9 45.1 404 258-668 21-431 (458)
5 2qtl_A MSR;, methionine syntha 100.0 5E-76 1.7E-80 663.9 43.6 376 285-668 105-512 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 1.6E-73 5.5E-78 621.9 37.7 358 292-668 4-365 (393)
7 1f20_A Nitric-oxide synthase; 100.0 2.2E-71 7.6E-76 613.2 38.4 370 288-668 24-407 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 2.9E-69 9.8E-74 585.4 36.2 344 286-668 3-348 (374)
9 3hr4_A Nitric oxide synthase, 100.0 8.9E-35 3E-39 290.3 18.3 161 74-246 31-191 (219)
10 2bmw_A Ferredoxin--NADP reduct 100.0 3.9E-33 1.3E-37 293.8 27.4 252 287-667 14-281 (304)
11 3jqq_A Ferredoxin NADP reducta 100.0 2.1E-33 7.1E-38 298.0 24.0 274 289-664 10-300 (316)
12 3vo2_A Putative uncharacterize 100.0 4.1E-33 1.4E-37 294.8 25.9 250 288-667 27-287 (310)
13 1fnb_A Ferredoxin-NADP+ reduct 100.0 4E-33 1.4E-37 295.3 24.9 250 288-667 31-291 (314)
14 2b5o_A FNR, ferredoxin--NADP r 100.0 1.6E-31 5.3E-36 292.6 25.4 251 289-667 117-379 (402)
15 2rc5_A Ferredoxin-NADP reducta 100.0 6.9E-31 2.4E-35 278.0 23.8 254 289-665 16-290 (314)
16 3lo8_A Ferredoxin--NADP reduct 100.0 4E-30 1.4E-34 271.8 25.8 251 289-667 23-288 (311)
17 1bvy_F Protein (cytochrome P45 100.0 4.5E-28 1.5E-32 238.3 15.5 147 82-240 20-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 4.4E-27 1.5E-31 226.4 14.8 151 82-244 8-158 (167)
19 2hna_A Protein MIOC, flavodoxi 99.9 3.2E-27 1.1E-31 222.3 6.1 144 83-239 1-146 (147)
20 1tvc_A Methane monooxygenase c 99.9 1.2E-25 4.1E-30 229.9 16.8 182 456-663 44-231 (250)
21 1umk_A B5R, NADH-cytochrome B5 99.9 5.6E-25 1.9E-29 228.0 21.3 180 470-664 64-265 (275)
22 2r6h_A NADH:ubiquinone oxidore 99.9 1.9E-25 6.4E-30 233.2 15.5 181 469-664 84-277 (290)
23 1qfj_A Protein (flavin reducta 99.9 1.2E-25 4.2E-30 227.0 12.2 181 455-663 29-216 (232)
24 3f6r_A Flavodoxin; FMN binding 99.9 4.2E-25 1.4E-29 207.7 13.9 143 83-238 1-147 (148)
25 2eix_A NADH-cytochrome B5 redu 99.9 5.4E-25 1.8E-29 223.8 13.7 184 456-663 42-232 (243)
26 1fdr_A Flavodoxin reductase; f 99.9 6.7E-25 2.3E-29 223.8 13.5 186 455-663 30-228 (248)
27 4eh1_A Flavohemoprotein; struc 99.9 1.9E-24 6.4E-29 219.7 15.0 182 455-664 33-223 (243)
28 1krh_A Benzoate 1,2-dioxygenas 99.9 2.8E-24 9.5E-29 229.6 15.2 179 456-663 139-322 (338)
29 1gvh_A Flavohemoprotein; oxido 99.9 5.8E-24 2E-28 232.0 16.2 179 456-663 183-377 (396)
30 4g1v_A Flavohemoglobin; three 99.9 1.6E-23 5.3E-28 229.0 17.2 183 456-664 184-378 (399)
31 2bgi_A Ferredoxin-NADP(H) redu 99.9 3.9E-24 1.3E-28 221.7 11.4 185 456-663 44-247 (272)
32 1ep3_B Dihydroorotate dehydrog 99.9 5.7E-24 1.9E-28 219.2 12.5 171 456-663 34-211 (262)
33 2cnd_A NADH-dependent nitrate 99.9 5.4E-24 1.8E-28 219.9 11.0 193 456-663 43-258 (270)
34 1cqx_A Flavohemoprotein; globi 99.9 1.8E-23 6E-28 228.7 15.3 186 456-663 185-383 (403)
35 2qdx_A Ferredoxin reductase; o 99.9 4.8E-24 1.6E-28 218.9 9.8 185 456-663 31-233 (257)
36 4fk8_A Ferredoxin--NADP reduct 99.9 2.7E-24 9.3E-29 222.5 7.4 185 456-664 47-250 (271)
37 1f4p_A Flavodoxin; electron tr 99.9 4.6E-23 1.6E-27 193.4 13.9 142 84-238 1-146 (147)
38 2pia_A Phthalate dioxygenase r 99.9 8E-23 2.7E-27 217.0 10.7 173 456-663 39-214 (321)
39 2wc1_A Flavodoxin; electron tr 99.9 1.6E-22 5.3E-27 197.2 7.8 146 83-242 1-179 (182)
40 1yob_A Flavodoxin 2, flavodoxi 99.9 4.8E-22 1.7E-26 193.3 9.0 143 84-240 1-176 (179)
41 2fcr_A Flavodoxin; electron tr 99.9 3E-21 1E-25 186.6 13.6 140 85-239 1-171 (173)
42 2bmv_A Flavodoxin; electron tr 99.9 3.8E-22 1.3E-26 191.0 6.5 138 83-239 1-163 (164)
43 1ag9_A Flavodoxin; electron tr 99.8 1.7E-21 5.7E-26 188.8 9.3 143 84-241 1-169 (175)
44 1obo_A Flavodoxin; electron tr 99.8 1.2E-20 4E-25 181.3 14.2 142 84-240 2-168 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 9.1E-21 3.1E-25 182.0 11.0 142 84-239 1-167 (169)
46 5nul_A Flavodoxin; electron tr 99.8 3.6E-19 1.2E-23 165.1 14.5 131 86-234 1-134 (138)
47 4dik_A Flavoprotein; TM0755, e 99.8 9.9E-20 3.4E-24 199.1 8.6 179 10-235 218-405 (410)
48 3hly_A Flavodoxin-like domain; 99.8 7.1E-19 2.4E-23 168.1 10.3 142 84-241 1-144 (161)
49 3fni_A Putative diflavin flavo 99.8 9.4E-19 3.2E-23 166.9 10.0 144 82-241 3-149 (159)
50 2gpj_A Siderophore-interacting 99.7 4.8E-18 1.7E-22 174.0 8.3 166 456-662 39-211 (252)
51 2fz5_A Flavodoxin; alpha/beta 99.7 3.2E-17 1.1E-21 151.1 12.8 131 86-235 2-134 (137)
52 2xod_A NRDI protein, NRDI; fla 99.7 1.6E-17 5.3E-22 150.6 7.0 116 86-236 1-117 (119)
53 3a1f_A Cytochrome B-245 heavy 99.6 9.2E-17 3.1E-21 155.6 6.9 134 529-664 3-169 (186)
54 3lrx_A Putative hydrogenase; a 99.6 1.6E-16 5.4E-21 151.3 7.0 121 525-663 5-134 (158)
55 1rlj_A NRDI protein; flavoprot 99.6 1.8E-16 6.1E-21 147.5 4.5 123 82-238 7-130 (139)
56 3lyu_A Putative hydrogenase; t 99.6 1.5E-15 5.1E-20 142.0 9.4 119 527-663 3-129 (142)
57 1ycg_A Nitric oxide reductase; 99.6 7.2E-16 2.4E-20 167.5 6.5 141 83-237 251-394 (398)
58 1e5d_A Rubredoxin\:oxygen oxid 99.6 2.5E-15 8.4E-20 163.4 9.0 145 83-241 252-398 (402)
59 2ark_A Flavodoxin; FMN, struct 99.5 3.1E-13 1.1E-17 131.9 15.3 150 82-243 3-169 (188)
60 2ohh_A Type A flavoprotein FPR 99.5 5.8E-14 2E-18 152.7 9.3 145 82-238 255-401 (404)
61 2a5l_A Trp repressor binding p 99.5 4.8E-13 1.6E-17 131.2 14.8 128 83-214 5-145 (200)
62 2q9u_A A-type flavoprotein; fl 99.5 3.4E-14 1.2E-18 155.3 6.7 145 83-241 256-405 (414)
63 3b6i_A Flavoprotein WRBA; flav 99.4 2.2E-12 7.4E-17 126.3 14.2 127 83-214 1-141 (198)
64 3n3a_C Protein NRDI; ribonucle 99.4 7.4E-13 2.5E-17 123.5 7.7 98 83-205 20-122 (153)
65 1ydg_A Trp repressor binding p 99.4 6E-12 2.1E-16 124.7 14.6 127 82-214 5-152 (211)
66 2zki_A 199AA long hypothetical 99.4 6.4E-12 2.2E-16 123.2 14.4 127 82-214 3-144 (199)
67 3d7n_A Flavodoxin, WRBA-like p 99.3 1.5E-11 5.2E-16 120.4 13.3 123 82-213 5-127 (193)
68 3klb_A Putative flavoprotein; 99.3 1.6E-11 5.4E-16 117.1 11.0 133 83-235 4-160 (162)
69 2vzf_A NADH-dependent FMN redu 99.2 6.6E-11 2.3E-15 116.2 14.7 123 83-214 2-138 (197)
70 4ici_A Putative flavoprotein; 99.2 3.8E-11 1.3E-15 115.5 12.5 134 82-235 12-168 (171)
71 3edo_A Flavoprotein, putative 99.2 1.6E-10 5.6E-15 108.6 11.8 126 83-232 3-150 (151)
72 1t5b_A Acyl carrier protein ph 99.1 7.3E-10 2.5E-14 108.3 15.9 158 83-242 1-198 (201)
73 1rtt_A Conserved hypothetical 99.0 3E-09 1E-13 103.8 12.9 125 82-213 5-143 (193)
74 1sqs_A Conserved hypothetical 99.0 9.3E-09 3.2E-13 104.1 16.4 154 83-241 1-179 (242)
75 1t0i_A YLR011WP; FMN binding p 99.0 4.5E-09 1.5E-13 102.2 13.3 122 84-215 1-151 (191)
76 3gfs_A FMN-dependent NADPH-azo 98.9 1.7E-09 5.9E-14 103.8 8.1 144 84-242 1-166 (174)
77 2q62_A ARSH; alpha/beta, flavo 98.9 2.8E-08 9.7E-13 101.0 16.4 127 82-213 33-170 (247)
78 2hpv_A FMN-dependent NADH-azor 98.8 8.5E-08 2.9E-12 94.4 16.2 157 83-241 1-203 (208)
79 2fzv_A Putative arsenical resi 98.8 6.9E-08 2.4E-12 99.6 15.6 126 82-212 57-194 (279)
80 3fvw_A Putative NAD(P)H-depend 98.7 2.1E-07 7.1E-12 90.9 14.7 153 83-241 2-180 (192)
81 1rli_A Trp repressor binding p 98.7 2.3E-07 8E-12 89.1 13.7 126 82-215 2-154 (184)
82 3r6w_A FMN-dependent NADH-azor 98.6 5.7E-07 1.9E-11 89.0 16.4 158 83-242 1-208 (212)
83 3k1y_A Oxidoreductase; structu 98.6 5.6E-07 1.9E-11 87.9 13.5 127 81-214 9-154 (191)
84 4hs4_A Chromate reductase; tri 98.5 8.8E-07 3E-11 87.0 14.2 153 83-242 6-183 (199)
85 3rpe_A MDAB, modulator of drug 98.5 2.6E-06 9E-11 84.7 16.6 155 82-243 24-216 (218)
86 3lcm_A SMU.1420, putative oxid 98.5 1.3E-06 4.5E-11 85.5 13.4 156 84-243 1-189 (196)
87 1d4a_A DT-diaphorase, quinone 98.4 3.7E-06 1.3E-10 86.6 15.9 159 83-244 2-216 (273)
88 3s2y_A Chromate reductase; ura 97.8 3.5E-08 1.2E-12 97.1 0.0 125 83-214 6-145 (199)
89 3tem_A Ribosyldihydronicotinam 98.4 5.1E-06 1.8E-10 83.3 15.0 159 83-244 1-215 (228)
90 3f2v_A General stress protein 98.4 2.7E-06 9.2E-11 83.1 12.5 157 83-242 1-181 (192)
91 3p0r_A Azoreductase; structura 98.4 4.5E-06 1.5E-10 82.6 14.3 158 83-242 4-207 (211)
92 2amj_A Modulator of drug activ 98.3 1E-05 3.4E-10 79.7 16.4 148 82-233 11-197 (204)
93 3svl_A Protein YIEF; E. coli C 98.2 8.7E-06 3E-10 79.4 13.1 155 82-243 3-183 (193)
94 3u7i_A FMN-dependent NADH-azor 98.2 4.7E-05 1.6E-09 76.0 16.8 160 82-242 3-213 (223)
95 3u7r_A NADPH-dependent FMN red 98.2 4.7E-05 1.6E-09 74.1 16.0 153 83-241 2-176 (190)
96 3ha2_A NADPH-quinone reductase 98.0 9.4E-05 3.2E-09 71.1 14.2 150 84-241 1-166 (177)
97 3l9w_A Glutathione-regulated p 97.7 0.00059 2E-08 74.3 15.7 157 83-243 236-408 (413)
98 4gi5_A Quinone reductase; prot 97.6 0.0013 4.6E-08 67.6 16.8 162 82-246 21-245 (280)
99 3rht_A (gatase1)-like protein; 70.9 4.9 0.00017 40.4 5.6 76 82-167 3-78 (259)
100 1tvm_A PTS system, galactitol- 68.2 11 0.00039 32.5 6.8 43 82-126 20-64 (113)
101 1ccw_A Protein (glutamate muta 68.2 11 0.00036 33.8 6.8 110 87-215 5-119 (137)
102 4e5v_A Putative THUA-like prot 63.5 41 0.0014 34.0 10.8 74 83-167 4-85 (281)
103 1t0b_A THUA-like protein; treh 53.6 29 0.00099 34.5 7.6 63 100-167 33-96 (252)
104 1e2b_A Enzyme IIB-cellobiose; 52.3 18 0.00063 30.9 5.1 56 83-149 3-60 (106)
105 3nbm_A PTS system, lactose-spe 51.0 37 0.0013 29.1 6.9 79 82-184 5-85 (108)
106 1mkz_A Molybdenum cofactor bio 50.5 18 0.0006 33.8 5.1 58 175-232 8-65 (172)
107 3gv0_A Transcriptional regulat 49.6 1.9E+02 0.0065 28.0 13.3 137 83-241 8-155 (288)
108 2l2q_A PTS system, cellobiose- 47.9 19 0.00065 30.8 4.5 33 84-119 5-37 (109)
109 3l49_A ABC sugar (ribose) tran 46.2 1.6E+02 0.0056 28.3 12.0 139 83-241 5-153 (291)
110 3re1_A Uroporphyrinogen-III sy 45.1 35 0.0012 33.8 6.7 91 98-214 23-118 (269)
111 4es6_A Uroporphyrinogen-III sy 44.2 35 0.0012 33.4 6.5 89 99-213 16-109 (254)
112 3ju3_A Probable 2-oxoacid ferr 42.0 18 0.00062 31.4 3.5 56 84-145 15-71 (118)
113 3pzy_A MOG; ssgcid, seattle st 40.2 17 0.00059 33.6 3.2 57 175-232 5-63 (164)
114 3mw8_A Uroporphyrinogen-III sy 39.5 37 0.0013 32.8 5.8 82 102-212 14-97 (240)
115 3czc_A RMPB; alpha/beta sandwi 38.8 15 0.0005 31.6 2.3 33 82-116 17-49 (110)
116 2pjk_A 178AA long hypothetical 37.0 16 0.00053 34.4 2.4 57 175-231 13-76 (178)
117 3tb6_A Arabinose metabolism tr 35.6 2.5E+02 0.0087 26.9 11.4 140 84-241 16-164 (298)
118 3iwt_A 178AA long hypothetical 35.4 25 0.00084 32.7 3.5 57 175-231 13-76 (178)
119 3k4h_A Putative transcriptiona 34.3 2.1E+02 0.0073 27.4 10.6 137 83-241 8-159 (292)
120 2xdq_A Light-independent proto 34.0 1.4E+02 0.0046 32.1 9.7 112 84-213 197-345 (460)
121 3m9w_A D-xylose-binding peripl 33.6 3.4E+02 0.012 26.4 12.2 138 84-242 3-152 (313)
122 1vkr_A Mannitol-specific PTS s 33.2 64 0.0022 28.3 5.7 42 82-125 12-56 (125)
123 1tvc_A Methane monooxygenase c 32.4 42 0.0014 32.6 4.8 45 291-340 7-56 (250)
124 1iow_A DD-ligase, DDLB, D-ALA\ 31.8 1.9E+02 0.0066 28.2 9.9 42 83-126 2-46 (306)
125 2yxb_A Coenzyme B12-dependent 30.8 3E+02 0.01 24.9 10.1 127 86-239 19-146 (161)
126 1y5e_A Molybdenum cofactor bio 30.3 35 0.0012 31.5 3.6 57 175-231 11-67 (169)
127 2r6h_A NADH:ubiquinone oxidore 29.7 84 0.0029 31.0 6.6 42 294-340 9-51 (290)
128 3g1w_A Sugar ABC transporter; 28.6 3.5E+02 0.012 26.1 11.1 138 83-241 4-154 (305)
129 3qk7_A Transcriptional regulat 28.1 4.1E+02 0.014 25.6 12.9 136 83-241 6-154 (294)
130 1qfj_A Protein (flavin reducta 27.7 94 0.0032 29.5 6.4 40 295-340 3-42 (232)
131 1ep3_B Dihydroorotate dehydrog 26.8 70 0.0024 31.3 5.4 41 296-341 7-47 (262)
132 2cnd_A NADH-dependent nitrate 26.6 1E+02 0.0034 30.1 6.5 43 292-339 10-54 (270)
133 1krh_A Benzoate 1,2-dioxygenas 26.1 1E+02 0.0035 31.3 6.6 42 294-340 108-151 (338)
134 2eix_A NADH-cytochrome B5 redu 25.5 1.5E+02 0.005 28.3 7.4 43 292-339 9-53 (243)
135 2pia_A Phthalate dioxygenase r 24.1 1.4E+02 0.0049 30.1 7.3 42 294-340 8-51 (321)
136 4f06_A Extracellular ligand-bi 24.1 5.5E+02 0.019 25.7 12.2 48 158-215 127-174 (371)
137 4eg0_A D-alanine--D-alanine li 23.5 1.5E+02 0.005 29.7 7.2 41 83-125 13-56 (317)
138 3l6u_A ABC-type sugar transpor 22.7 3.6E+02 0.012 25.7 9.8 138 83-240 8-162 (293)
139 4eyg_A Twin-arginine transloca 22.2 2.4E+02 0.0081 28.2 8.6 97 82-193 138-237 (368)
140 3kbq_A Protein TA0487; structu 22.1 46 0.0016 31.1 2.7 56 178-233 4-61 (172)
141 4gud_A Imidazole glycerol phos 22.0 78 0.0027 29.8 4.5 53 85-159 4-57 (211)
142 3s2u_A UDP-N-acetylglucosamine 21.9 70 0.0024 33.0 4.4 24 544-567 3-28 (365)
143 2bgi_A Ferredoxin-NADP(H) redu 21.9 1.3E+02 0.0044 29.5 6.2 43 292-340 14-56 (272)
144 1leh_A Leucine dehydrogenase; 21.6 1.1E+02 0.0037 32.0 5.8 117 82-212 77-200 (364)
145 1di6_A MOGA, molybdenum cofact 21.4 56 0.0019 31.1 3.2 56 177-232 3-62 (195)
146 3egc_A Putative ribose operon 21.0 4E+02 0.014 25.5 9.8 137 83-241 8-153 (291)
147 3rfq_A Pterin-4-alpha-carbinol 20.7 34 0.0012 32.3 1.5 57 175-231 28-85 (185)
148 2m1z_A LMO0427 protein; homolo 20.2 3.1E+02 0.011 23.3 7.3 77 83-186 2-86 (106)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=5.2e-111 Score=965.98 Aligned_cols=576 Identities=41% Similarity=0.757 Sum_probs=506.1
Q ss_pred CchhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEec
Q 005924 71 KDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVAT 148 (669)
Q Consensus 71 ~~~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sT 148 (669)
..|+++++|.+.+++++|+|||||||||++|++|++++.+. |+.++++|+++++.++ +..+. +++++||++||
T Consensus 6 ~~~~~~~~~~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~--g~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT 80 (618)
T 3qe2_A 6 RESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRY--GMRGMSADPEEYDLAD---LSSLPEIDNALVVFCMAT 80 (618)
T ss_dssp -CCCHHHHHHHHTCSEEEEEECSSSHHHHHHHHHHHHGGGG--TCCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEEC
T ss_pred hHHHHHHHHHhcCCeEEEEEECChhHHHHHHHHHHHHHHhC--CCceEEechHHcCHHH---hhhcccccCcEEEEEcCc
Confidence 45689999999888999999999999999999999999877 8889999999999877 22222 47899999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHH
Q 005924 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF 228 (669)
Q Consensus 149 yG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f 228 (669)
||+|++|+||..|+++|.+...+ |+|++||||||||++|+|||.++|.++++|+++||+++.++|+||++.+++++|
T Consensus 81 ~G~G~~pd~~~~F~~~L~~~~~~---l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~ 157 (618)
T 3qe2_A 81 YGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDF 157 (618)
T ss_dssp BGGGBCCGGGHHHHHHHHHCCCC---CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhhcccc---ccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHH
Confidence 99999999999999999874333 999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCCcccCCceEEEEcCCc----ccccCCCC-CCCCCCCCCCCCCCCeeEEEEEeE
Q 005924 229 TAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPT----VTSSVDNY-SNMPNGNASFDIHHPCRVNVAVRR 303 (669)
Q Consensus 229 ~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~p~~a~v~~~~ 303 (669)
++|++.+|++|.+.+..+.... . ...+.+++...... ...++... ....+...+|+.++||.|+|+.|+
T Consensus 158 ~~W~~~l~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~ 231 (618)
T 3qe2_A 158 ITWREQFWLAVCEHFGVEATGE---E---SSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNR 231 (618)
T ss_dssp HHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccc---c---ccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEE
Confidence 9999999999999876432111 0 12245666554221 11111111 111224567889999999999999
Q ss_pred EecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCc
Q 005924 304 ELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 383 (669)
Q Consensus 304 ~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p 383 (669)
+|+. +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|++|+++..++.. +.+.|||.|
T Consensus 232 ~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~-----~~~~~~p~~ 305 (618)
T 3qe2_A 232 KLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCP 305 (618)
T ss_dssp ECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC-----SCCSSSSSS
T ss_pred EcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccc-----cCCCCCCCc
Confidence 9996 5679999999999999999999999999999999999999999999999999998765421 346789999
Q ss_pred ccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhc--CCCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHH
Q 005924 384 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLS--SPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVF 461 (669)
Q Consensus 384 ~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~--s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~l 461 (669)
+|++++|++|+||+++|+|+||+.||.||+|+.+|++|+.|+ +++|+++|.+|+.+++++++|||.+||++++|+++|
T Consensus 306 ~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l 385 (618)
T 3qe2_A 306 TSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHL 385 (618)
T ss_dssp EEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHH
T ss_pred eEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHH
Confidence 999999999999999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred HHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCC-CCCCCCccEEEEEEeCCCcccCC
Q 005924 462 FAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPSNFKLPA 540 (669)
Q Consensus 462 i~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~v~v~~~~g~F~lp~ 540 (669)
++.+ |+++||+|||||+|..+++.++|+|+++.++++.++.+.|+||+||+++.+ |+ ......|+|++|.|+|++|.
T Consensus 386 ~~~l-p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd-~~~~~~v~v~~p~g~F~lp~ 463 (618)
T 3qe2_A 386 CELL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGE-NGGRALVPMFVRKSQFRLPF 463 (618)
T ss_dssp HHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCS
T ss_pred HHhc-cccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCC-CCcceEEEEEEecCcccCCC
Confidence 9999 999999999999998888999999999999998899999999999999888 61 00012899999999999999
Q ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCc
Q 005924 541 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK 620 (669)
Q Consensus 541 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k 620 (669)
++.+|+||||+||||||||||+|+|.++...|...++++||||||+++.|++|++||++|.+.|.+++++++|||++..+
T Consensus 464 ~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k 543 (618)
T 3qe2_A 464 KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHK 543 (618)
T ss_dssp STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSC
T ss_pred CCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCC
Confidence 88899999999999999999999998765555456899999999999669999999999999999989999999999889
Q ss_pred ccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 621 EYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 621 ~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+||||+|.++.+++++++.++++||||||++.|+++|+++|.+|++++
T Consensus 544 ~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~ 591 (618)
T 3qe2_A 544 VYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAEL 591 (618)
T ss_dssp CCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHh
Confidence 999999999999999988889999999996689999999999999874
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=2e-106 Score=937.52 Aligned_cols=570 Identities=32% Similarity=0.580 Sum_probs=495.6
Q ss_pred CCchhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHH-hhhCCCeeEEecCCCCCccchhHHhhhccC-CeEEEEEe
Q 005924 70 AKDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIK-ARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVA 147 (669)
Q Consensus 70 ~~~~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~-~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~~vi~~~s 147 (669)
++++++++++.+.+++++|+|+|||||||++|++|++++. +. |+.++++++++++.++ +.++ +.+||++|
T Consensus 36 ~~~~~~~~~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~--g~~v~v~~l~~~~~~~------l~~~~~~vi~~~s 107 (682)
T 2bpo_A 36 SGNRDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKF--NLNVMCADVENYDFES------LNDVPVIVSIFIS 107 (682)
T ss_dssp --CCCHHHHHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHH--CCCEEEEETTSSCGGG------GGGCCSEEEEEEE
T ss_pred CcchhHHHHHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhc--CCceEEeehHHCCHHH------HhhcCCeEEEEeC
Confidence 3467999999999999999999999999999999999998 66 7889999999999888 7788 99999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC-CcHH
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIED 226 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~ 226 (669)
|||+|++|+|+..|++||.... ...|++++|||||+||++|+|||.++|.++++|+++||+++.+.+++|++. +.++
T Consensus 108 T~G~G~~p~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~ 185 (682)
T 2bpo_A 108 TYGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDE 185 (682)
T ss_dssp CBTTTBCCSSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHH
T ss_pred ccCCCCCCHHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHH
Confidence 9999999999999999998753 123899999999999999999999999999999999999999999999875 7899
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccCCceEEEEcC---CcccccCCCCCCC----------CCCCCCCCCCC
Q 005924 227 DFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHG---PTVTSSVDNYSNM----------PNGNASFDIHH 293 (669)
Q Consensus 227 ~f~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~~~ 293 (669)
+|++|.+.+|++|.+.+..+..... ..+.+.++... +.+..+++...++ .+...+|+.++
T Consensus 186 ~~~~W~~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (682)
T 2bpo_A 186 DYMAWKDSILEVLKDELHLDEQEAK-------FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQ 258 (682)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC-------CCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTB
T ss_pred HHHHHHHHHHHHHHhhcCCcccccc-------cCCcceeEecccCCccccccCccccccccccccccccccccCcccCCC
Confidence 9999999999999987754322110 11223332221 1111122211101 11345788899
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRG 373 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 373 (669)
||.|+|+.+++|++ +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|++|+++..++
T Consensus 259 p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~------ 331 (682)
T 2bpo_A 259 PYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP------ 331 (682)
T ss_dssp CCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST------
T ss_pred ceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc------
Confidence 99999999999998 77899999999999999999999999999999999999999999999999999976544
Q ss_pred CCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhCC-
Q 005924 374 SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP- 452 (669)
Q Consensus 374 ~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp- 452 (669)
+.+.|||.|||++++|++|+||+++|+|+||+.||.||+|+++|++|++|+ +|+++|.+|+.++++|++|||.+||
T Consensus 332 -~~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~ 408 (682)
T 2bpo_A 332 -TVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSD 408 (682)
T ss_dssp -TCCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHT
T ss_pred -ccCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccC
Confidence 245689999999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred ---CCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCC---CCccCCcccHhhhhcCCCC-------
Q 005924 453 ---SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT---GRIHKGVCSTWMKNAIPLE------- 519 (669)
Q Consensus 453 ---s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~---g~~~~G~~S~~L~~l~~g~------- 519 (669)
++++|++++++.+ |+++||+|||||+|..+++.++|+|+++.|+++. ++.+.|+||+||+++++|+
T Consensus 409 ~~~s~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~ 487 (682)
T 2bpo_A 409 GAKWDTVPMQFLVESV-PQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAE 487 (682)
T ss_dssp TCCCTTSCHHHHHHHS-CBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTT
T ss_pred cccccCCCHHHHHHhC-cccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccc
Confidence 8899999999998 9999999999999987789999999999998876 6778999999999987731
Q ss_pred ----CC-C--------CccEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhh------cCCCCCCEEE
Q 005924 520 ----GN-G--------DCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ------DGAQLGPALL 580 (669)
Q Consensus 520 ----~~-~--------~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~------~g~~~~~~~L 580 (669)
+. . .+..|++++++++|+||.++.+|+||||+||||||||||+|++..... .|...++++|
T Consensus 488 ~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L 567 (682)
T 2bpo_A 488 TNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHIL 567 (682)
T ss_dssp SCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEE
T ss_pred cccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEE
Confidence 00 0 014788899888999998888999999999999999999999987654 3444689999
Q ss_pred EEeecCCCcccccHHHHHhhH-hcCCccEEEEEEec-CCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHH
Q 005924 581 FFGCRNRRMDFIYEDELNNFE-EEGVISELILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVH 658 (669)
Q Consensus 581 f~G~R~~~~d~ly~del~~~~-~~g~~~~l~~afSR-~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~ 658 (669)
|||||++. |++|++||++|. +.|.+++++++||| ++..++||||+|.++.+++|++++++++||||||+++|+++|+
T Consensus 568 ~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~ 646 (682)
T 2bpo_A 568 FYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVS 646 (682)
T ss_dssp EEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHH
T ss_pred EEecCChh-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHH
Confidence 99999995 999999999995 55888999999999 5567999999999999999999988999999999778999999
Q ss_pred HHHHHHHHhh
Q 005924 659 RTLHTIVQEQ 668 (669)
Q Consensus 659 ~~L~~i~~~~ 668 (669)
++|.+|++++
T Consensus 647 ~~L~~i~~~~ 656 (682)
T 2bpo_A 647 TALVGILSRG 656 (682)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1e-100 Score=889.70 Aligned_cols=560 Identities=34% Similarity=0.603 Sum_probs=476.5
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005924 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
...+++++|+|||||||||++|++|++.+. . ++.+++++|++|+.++ +.+++++||++||||+|+||+|+.
T Consensus 8 ~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~--~~~~~v~~m~~~d~~~------l~~~~~vl~vtsT~G~Gdpp~n~~ 78 (688)
T 1tll_A 8 MAKRVKATILYATETGKSQAYAKTLCEIFK-H--AFDAKAMSMEEYDIVH------LEHEALVLVVTSTFGNGDPPENGE 78 (688)
T ss_dssp -CCSCEEEEEEECSSSHHHHHHHHHHHHHT-T--TSEEEEEETTTSCTTS------GGGCSEEEEEECCBTTTBCCGGGH
T ss_pred hcCCCeEEEEEECCchHHHHHHHHHHHHHh-c--CCCcEEeecccCChhH------hccCceEEEEEcccCCCcCCHHHH
Confidence 446778999999999999999999999985 4 6889999999999988 888999999999999999999999
Q ss_pred HHHHHHhcCCC---------------------------------------CCCCCCCceEEEEEecCcchHHHHHHHHHH
Q 005924 160 RFYKWFTEGND---------------------------------------RGPWLQQLKFGVFGLGNRQYEHFNKIGIVL 200 (669)
Q Consensus 160 ~F~~~L~~~~~---------------------------------------~~~~l~~~~~avFGlGds~Y~~f~~~~k~l 200 (669)
.|+++|.+... ....|+|++||||||||++|+|||.+++.+
T Consensus 79 ~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~l 158 (688)
T 1tll_A 79 KFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAV 158 (688)
T ss_dssp HHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHH
Confidence 99999976510 013589999999999999999999999999
Q ss_pred HHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhhhCCCCCCCCC---C---CCC-cccCCceEEEEcCCccc
Q 005924 201 DEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTV---S---TPY-TAAIPEYRVMIHGPTVT 273 (669)
Q Consensus 201 d~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~p~-~~~~~~~~~~~~~~~~~ 273 (669)
|++|+++||+++.++++||+..+.+++|++|.+.+|++|++.+..+.+.... . .+. ....+.+++........
T Consensus 159 d~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (688)
T 1tll_A 159 DTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPD 238 (688)
T ss_dssp HHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCC
T ss_pred HHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEeccccccc
Confidence 9999999999999999999987899999999999999999976533221100 0 000 01123445443221100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccCCHHHHHHHHHHh
Q 005924 274 SSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLL 352 (669)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~I~p~N~~~~V~~~l~~l 352 (669)
. .....+++.++||.++|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++|
T Consensus 239 ~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l 310 (688)
T 1tll_A 239 L--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERL 310 (688)
T ss_dssp H--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTC
T ss_pred c--------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHh
Confidence 0 000112456789999999999999999999999999999875 7999999999999999999999999999
Q ss_pred CC--CCCcEEEEecCCCCCCCCC----CCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005924 353 GQ--SLELLFSLHTDNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSS 426 (669)
Q Consensus 353 ~l--~~~~~~~~~~~~~~~~~~~----~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s 426 (669)
|+ ++|++|.|+..++...+-+ ...+.+|| |||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|++
T Consensus 311 ~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~ 389 (688)
T 1tll_A 311 EDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK 389 (688)
T ss_dssp SSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 86 5688888875422111111 01235788 99999999999999999999999999999999999999999964
Q ss_pred CCChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCC--Ccc
Q 005924 427 PQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIH 504 (669)
Q Consensus 427 ~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g--~~~ 504 (669)
+++.|.+|+....++++|||.+||++++|+++++..+ |+++||+|||||+|..+++.++|+|+++.+++|.| +.+
T Consensus 390 --~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~ 466 (688)
T 1tll_A 390 --GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVH 466 (688)
T ss_dssp --CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEE
T ss_pred --CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhC-cccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcC
Confidence 8899999999999999999999999999999999998 99999999999999877899999999998877654 567
Q ss_pred CCcccHhhhhcCCCCCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhh-cCCCCCCEEEEE
Q 005924 505 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFF 582 (669)
Q Consensus 505 ~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~-~g~~~~~~~Lf~ 582 (669)
.|+||+||+++++| +.|.|++|++ .|.+|.++.+|+||||+||||||||||+|++....+ .+...++++|||
T Consensus 467 ~G~~S~~L~~l~~G------d~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~ 540 (688)
T 1tll_A 467 HGVCSSWLNRIQAD------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVF 540 (688)
T ss_dssp ECHHHHHHTTCCTT------SEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEE
T ss_pred CCchhHHHHhCCCC------CEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEE
Confidence 89999999999999 8999999665 999998888999999999999999999999987432 233568999999
Q ss_pred eecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCC-cccccchhHHh-HHHHHhcc-cCCCEEEEeCCchhhHHHHHH
Q 005924 583 GCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHR 659 (669)
Q Consensus 583 G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l~~~-~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~ 659 (669)
|||+++.|++|++||++|.+.+.+++++++|||++.. ++||||+|.++ ...+++++ +++++|||||| .+|+++|++
T Consensus 541 G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~ 619 (688)
T 1tll_A 541 GCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLK 619 (688)
T ss_dssp EESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHH
T ss_pred EeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHH
Confidence 9999987899999999999999988999999999764 89999999998 78888866 57899999999 689999999
Q ss_pred HHHHHHHh
Q 005924 660 TLHTIVQE 667 (669)
Q Consensus 660 ~L~~i~~~ 667 (669)
+|.+++++
T Consensus 620 ~L~~i~~~ 627 (688)
T 1tll_A 620 AIQRIMTQ 627 (688)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999765
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=4.6e-81 Score=690.90 Aligned_cols=404 Identities=42% Similarity=0.771 Sum_probs=362.3
Q ss_pred ccCCceEEEEcCCc----ccccCCCCC-CCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCC
Q 005924 258 AAIPEYRVMIHGPT----VTSSVDNYS-NMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGD 332 (669)
Q Consensus 258 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 332 (669)
...++|+++.+++. ++.|+++.. ...+++.+|+.++||.|+|++|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 35578999988643 356676542 345578899999999999999999998 467999999999999999999999
Q ss_pred eEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhC
Q 005924 333 HVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHA 412 (669)
Q Consensus 333 ~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a 412 (669)
||+|||.|+++.|++++++||+++|++|+++..++.. +.+.|||.|+|++++|++|+||+++|+|+||+.||.||
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~-----~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a 174 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYA 174 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGB
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCccc-----ccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHc
Confidence 9999999999999999999999999999998765421 34678999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHHhhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEE
Q 005924 413 TEPSEAERLKFLSSP--QGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVT 490 (669)
Q Consensus 413 ~d~~~k~~L~~l~s~--~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~ 490 (669)
+|+.+|++|++|++. +|+++|.+|+.+++++++|||.+||++++|+++|++++ |+++||+|||||+|..+++.++|+
T Consensus 175 ~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~l-p~l~pR~YSIsSsp~~~~~~i~lt 253 (458)
T 3qfs_A 175 SEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHIC 253 (458)
T ss_dssp CSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEE
T ss_pred CCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhhC-CCCcceeEeeccCcccCCCEEEEE
Confidence 999999999999874 68999999999999999999999999999999999999 999999999999998878999999
Q ss_pred EEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhh
Q 005924 491 CALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ 570 (669)
Q Consensus 491 v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~ 570 (669)
|++++++++.++.+.|+||+||+++.++|+...+..|+|++|.|.|++|.++.+|+||||+||||||||||+|+|.++.+
T Consensus 254 V~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~ 333 (458)
T 3qfs_A 254 AVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQ 333 (458)
T ss_dssp EECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHh
Confidence 99999998889999999999999988874211112799999999999999888999999999999999999999876554
Q ss_pred cCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCc
Q 005924 571 DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDA 650 (669)
Q Consensus 571 ~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a 650 (669)
.|...++++||||||+...|++|++||++|.+.+.++++++||||++..|+||||+|.++.+.+|+++.++++||||||+
T Consensus 334 ~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~ 413 (458)
T 3qfs_A 334 QGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDA 413 (458)
T ss_dssp HTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCC
Confidence 55456899999999997559999999999999998889999999999899999999999999999999889999999996
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 005924 651 KGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 651 ~~M~~~V~~~L~~i~~~~ 668 (669)
+.|+++|+++|.+|++++
T Consensus 414 ~~M~~~V~~~L~~i~~~~ 431 (458)
T 3qfs_A 414 RNMARDVQNTFYDIVAEL 431 (458)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 689999999999999864
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=5e-76 Score=663.88 Aligned_cols=376 Identities=34% Similarity=0.610 Sum_probs=333.1
Q ss_pred CCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCC--CcEEEE
Q 005924 285 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSL 362 (669)
Q Consensus 285 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~--~~~~~~ 362 (669)
.+.+|+.++||.|+|+.|++|+.++++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++ +.+|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999999986 567888
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCC
Q 005924 363 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 442 (669)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~ 442 (669)
+..++.... +...+++||.|||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|++++|+++|.+|+.++++
T Consensus 185 ~~~~~~~~~-~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~ 263 (539)
T 2qtl_A 185 KIKADTKKK-GATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACA 263 (539)
T ss_dssp EECTTCCCT-TCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTC
T ss_pred eccccccCC-CccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCC
Confidence 776543211 2346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCC--CCccCCcccHhhhhc-----
Q 005924 443 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNA----- 515 (669)
Q Consensus 443 ~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~--g~~~~G~~S~~L~~l----- 515 (669)
+++|||.+||++++|+++|++.+ |+++||+|||||+|..+++.++|+|+++.|.+++ ++.+.|+||+||+++
T Consensus 264 ~lldvL~~fps~~~p~~~ll~~l-p~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~ 342 (539)
T 2qtl_A 264 CLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVL 342 (539)
T ss_dssp CHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC
T ss_pred CHHHHHHhCCCcCCCHHHHHHhC-cCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhc
Confidence 99999999999999999999999 9999999999999976689999999999885443 466889999999997
Q ss_pred ------CCCCCCCCcc-------EEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC--CCCCCEE
Q 005924 516 ------IPLEGNGDCS-------WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG--AQLGPAL 579 (669)
Q Consensus 516 ------~~g~~~~~~~-------~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g--~~~~~~~ 579 (669)
++| + .|+|++|.| .|+||.++.+|+||||+||||||||||+|+|..+.+.+ ...+++|
T Consensus 343 ~~~~~~~~G------d~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~ 416 (539)
T 2qtl_A 343 QPNIHASHE------DSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMW 416 (539)
T ss_dssp --------------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEE
T ss_pred cccccCCCC------CccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEE
Confidence 677 6 999999986 99999888899999999999999999999997755433 2468999
Q ss_pred EEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC------CcccccchhHHhHHHHHhcc-cCCCEEEEeCCchh
Q 005924 580 LFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKG 652 (669)
Q Consensus 580 Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~------~k~yVq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~ 652 (669)
||||||+++.|++|++||++|.+.+.+++++++|||++. .++||||+|.++..++|+++ +++++||||||+++
T Consensus 417 LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~ 496 (539)
T 2qtl_A 417 LFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKN 496 (539)
T ss_dssp EEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHH
T ss_pred EEEEECCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHH
Confidence 999999995599999999999999999999999999976 78999999999999999988 56899999999658
Q ss_pred hHHHHHHHHHHHHHhh
Q 005924 653 MARDVHRTLHTIVQEQ 668 (669)
Q Consensus 653 M~~~V~~~L~~i~~~~ 668 (669)
|+++|+++|.+|++++
T Consensus 497 M~~~V~~~L~~i~~~~ 512 (539)
T 2qtl_A 497 MAKDVHDALVQIISKE 512 (539)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=1.6e-73 Score=621.93 Aligned_cols=358 Identities=35% Similarity=0.600 Sum_probs=318.6
Q ss_pred CCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCC
Q 005924 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTP 371 (669)
Q Consensus 292 ~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~ 371 (669)
..+|.|+|++|++|++++++|+|+|||||+++ +++|+|||||+|||.|+++.|+++|++||+++++.+.++.....
T Consensus 4 ~~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~--- 79 (393)
T 4dql_A 4 HGAFSTNVVASKELQQPGSARSTRHLEIELPK-EASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEK--- 79 (393)
T ss_dssp -CCEEEEEEEEEECSCTTCSCCEEEEEEECCT-TCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------
T ss_pred CCcEEEEEEeEEEcCCCCCCceEEEEEEECCC-CCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCc---
Confidence 45789999999999999999999999999984 89999999999999999999999999999999998877543221
Q ss_pred CCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHHHhC
Q 005924 372 RGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 451 (669)
Q Consensus 372 ~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~f 451 (669)
....|+|.|+|++++|++ +||+++|+|+||+.||+||+|+.+|++|++|++. ++|.+|+.+++++++|||.+|
T Consensus 80 ---~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 80 ---LAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred ---cccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 234578899999999999 9999999999999999999999999999999763 389999999999999999999
Q ss_pred CCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCC-ccCCcccHhhhhcCCCCCCCCccEEEE-
Q 005924 452 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPI- 529 (669)
Q Consensus 452 ps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~v~v- 529 (669)
|++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.++++.|+ .+.|+||+||+++++| +.|.+
T Consensus 153 ps~~~p~~~~l~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~G------d~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIALL-PSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEG------DTITCF 225 (393)
T ss_dssp TTCCCCHHHHHHTS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTT------CEEEEE
T ss_pred CCCCCCHHHHHHhC-CCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCc------CEEEEE
Confidence 99999999999998 999999999999998778999999999988776654 4679999999999999 78885
Q ss_pred -EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccE
Q 005924 530 -FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (669)
Q Consensus 530 -~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~ 608 (669)
.+|.|+|++|.++.+|+||||+||||||||||+|+|..+.+.|...++++||||||++..|++|++||+++.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 45678999999888999999999999999999999877666665678999999999965599999999999987655 7
Q ss_pred EEEEEec-CCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 609 LILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 609 l~~afSR-~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
++++||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~ 365 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADV 365 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHh
Confidence 9999999 55688999999999999999999999999999998889999999999999764
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=2.2e-71 Score=613.25 Aligned_cols=370 Identities=37% Similarity=0.668 Sum_probs=329.4
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccCCHHHHHHHHHHhCC--CCCcEEEEec
Q 005924 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHT 364 (669)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l--~~~~~~~~~~ 364 (669)
.++.++||.|+|++|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||+ ++|++|+|+.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4678999999999999999999999999999999876 799999999999999999999999999986 6688888875
Q ss_pred CCCCCCCCCC----CCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhc
Q 005924 365 DNEDGTPRGS----SLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 440 (669)
Q Consensus 365 ~~~~~~~~~~----~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~ 440 (669)
.++...+-+. ..+.+|| |||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|++ ++++|.+|+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~ 180 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGK 180 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred cccccCCCCccccccccCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhcc
Confidence 4221111000 1346888 99999999999999999999999999999999999999999965 889999999999
Q ss_pred CCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCC--CccCCcccHhhhhcCCC
Q 005924 441 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPL 518 (669)
Q Consensus 441 ~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g--~~~~G~~S~~L~~l~~g 518 (669)
.++++|||.+||++++|+++++..+ |+++||+|||||+|..+++.++|+|+++.++++.| +.+.|+||+||+++++|
T Consensus 181 ~~~i~~vl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~G 259 (435)
T 1f20_A 181 NPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD 259 (435)
T ss_dssp CCCHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTT
T ss_pred CCCHHHHHHhCCcCCCCHHHHHHhC-CCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCC
Confidence 9999999999999999999999998 99999999999999877899999999998887754 56789999999999999
Q ss_pred CCCCCccEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhh-cCCCCCCEEEEEeecCCCcccccHHH
Q 005924 519 EGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDE 596 (669)
Q Consensus 519 ~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~-~g~~~~~~~Lf~G~R~~~~d~ly~de 596 (669)
+.|.|++|++ .|.+|.++.+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++|
T Consensus 260 ------d~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~E 333 (435)
T 1f20_A 260 ------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 333 (435)
T ss_dssp ------CEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHH
T ss_pred ------CEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHH
Confidence 8999999655 999998888999999999999999999999986421 23356899999999999878999999
Q ss_pred HHhhHhcCCccEEEEEEecCCCC-cccccchhHHh-HHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 597 LNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 597 l~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l~~~-~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
|+++.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ +++++|||||| .+|+++|.++|.+|++++
T Consensus 334 l~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~ 407 (435)
T 1f20_A 334 TLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQ 407 (435)
T ss_dssp HHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHc
Confidence 99999999888999999999764 89999999988 77888876 56899999999 689999999999999763
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=2.9e-69 Score=585.39 Aligned_cols=344 Identities=30% Similarity=0.515 Sum_probs=316.1
Q ss_pred CCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecC
Q 005924 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (669)
Q Consensus 286 ~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~ 365 (669)
.++|+.++||.|+|++|++|++++++|+|+|||||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.+.
T Consensus 3 ~~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~-- 80 (374)
T 1ddg_A 3 TSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE-- 80 (374)
T ss_dssp CCCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--
T ss_pred CCCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC--
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHH
Q 005924 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (669)
Q Consensus 366 ~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~ 445 (669)
+.|+|++++|++|+||+ +|+|+||+.||.||+|++ |++|+ ++++.|.+|+. +++++
T Consensus 81 ---------------~~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~--~~~~~~~~~~~--~~~~~ 136 (374)
T 1ddg_A 81 ---------------GKTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLV--GDKAKLQHYAA--TTPIV 136 (374)
T ss_dssp ---------------TEEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGT--TCTHHHHHHHH--HSCHH
T ss_pred ---------------CCCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHh--cChHHHHHHHc--CCCHH
Confidence 14899999999999999 899999999999999974 88896 58899999997 48999
Q ss_pred HHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCc
Q 005924 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 524 (669)
Q Consensus 446 dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~ 524 (669)
|+|.+||+ ++++|||+.+. +++++|+|||||+|..+++.++|+|+++.++++ ++.+.|+||+||++ +++|
T Consensus 137 ~vl~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~G------ 207 (374)
T 1ddg_A 137 DMVRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE------ 207 (374)
T ss_dssp HHHHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSS------
T ss_pred HHHHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCC------
Confidence 99999999 99999999999 889999999999998768999999999988775 66788999999999 9999
Q ss_pred cEEEEEEeCC-CcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc
Q 005924 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (669)
Q Consensus 525 ~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~ 603 (669)
+.|.|.+|++ .|.+|.++.+|+||||+||||||||||++++... + ..++++||||||+++.|++|++||+++.+.
T Consensus 208 d~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~ 283 (374)
T 1ddg_A 208 GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 283 (374)
T ss_dssp CEEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHHHHHHT
T ss_pred CEEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCCchhhhhHHHHHHHHHHh
Confidence 8999999665 9999988889999999999999999999999863 2 458999999999984499999999999999
Q ss_pred CCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHhh
Q 005924 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQ 668 (669)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~ 668 (669)
+.+++++++|||++..++|||++|.++.+.++++++++++|||||++++|+++|+++|.+|++++
T Consensus 284 ~~~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~ 348 (374)
T 1ddg_A 284 GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEF 348 (374)
T ss_dssp TSCCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 98899999999998889999999999988999988889999999943899999999999999764
No 9
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=290.30 Aligned_cols=161 Identities=25% Similarity=0.443 Sum_probs=148.3
Q ss_pred hhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCC
Q 005924 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE 153 (669)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~ 153 (669)
....+.++.+++++|+|||||||||++|++|++.+ ++ |+.++++++++++.++ +.+++.+||++||||+|+
T Consensus 31 ~l~~~~~~~~~kv~IlYgS~tGnte~~A~~La~~l-~~--g~~v~v~~l~~~~~~~------l~~~~~vI~~tsTyG~Ge 101 (219)
T 3hr4_A 31 MLMRKTMASRVRVTILFATETGKSEALAWDLGALF-SC--AFNPKVVCMDKYRLSC------LEEERLLLVVTSTFGNGD 101 (219)
T ss_dssp HHHHHHHHTSCEEEEEEECSSSHHHHHHHHHHHHH-TT--TSEEEEEEGGGCCGGG------GGTCSEEEEEEECBTTTB
T ss_pred HHHHHHHhcCCcEEEEEECCchHHHHHHHHHHHHH-Hc--CCCeEEEEcccCCHhH------hccCCeEEEEEeccCCCc
Confidence 45666677889999999999999999999999998 45 7889999999999877 889999999999999999
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHH
Q 005924 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (669)
Q Consensus 154 ~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~ 233 (669)
+|+|+..|+++|..... .+++++||||||||++|++||.+++.++++|+++||+++.++++||++.+.+++|+.|.+
T Consensus 102 ~Pdna~~F~~~L~~~~~---~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~ 178 (219)
T 3hr4_A 102 CPGNGEKLKKSLFMLKE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAV 178 (219)
T ss_dssp CCGGGHHHHHHHHHCCC---CSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcch---hhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHH
Confidence 99999999999987532 389999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHhhhCCC
Q 005924 234 LVWPELDQLLRDE 246 (669)
Q Consensus 234 ~l~~~L~~~~~~~ 246 (669)
.+|++|++.+..+
T Consensus 179 ~l~~~l~~~~~~~ 191 (219)
T 3hr4_A 179 QTFKAACETFDVR 191 (219)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988654
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=3.9e-33 Score=293.83 Aligned_cols=252 Identities=25% Similarity=0.422 Sum_probs=206.9
Q ss_pred CCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCC
Q 005924 287 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 366 (669)
Q Consensus 287 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 366 (669)
..++..+|+.++|+.+++|++.+++++++|++|++++..+.|+||+++.|+++|..
T Consensus 14 ~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------ 69 (304)
T 2bmw_A 14 NLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------ 69 (304)
T ss_dssp CSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------
T ss_pred cccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------
Confidence 34667889999999999999988889999999999876789999999999877631
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHH
Q 005924 367 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 446 (669)
Q Consensus 367 ~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~d 446 (669)
. .|
T Consensus 70 ~------------------------------------------------------------~g----------------- 72 (304)
T 2bmw_A 70 K------------------------------------------------------------NG----------------- 72 (304)
T ss_dssp T------------------------------------------------------------TS-----------------
T ss_pred c------------------------------------------------------------cC-----------------
Confidence 0 00
Q ss_pred HHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCC-CCccCCcccHhhhhcCCCCCCC
Q 005924 447 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNG 522 (669)
Q Consensus 447 vl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~-g~~~~G~~S~~L~~l~~g~~~~ 522 (669)
.+.++|+|||+|+|.. +++.++|+|+.+.|.+|. ++...|.+|+||+++++|
T Consensus 73 --------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G---- 128 (304)
T 2bmw_A 73 --------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPG---- 128 (304)
T ss_dssp --------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTT----
T ss_pred --------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCC----
Confidence 0136899999999853 368899999987776543 445679999999999999
Q ss_pred CccEEEEEEeCCCc-ccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhc--C---CCCCCEEEEEeecCCCcccccHHH
Q 005924 523 DCSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--G---AQLGPALLFFGCRNRRMDFIYEDE 596 (669)
Q Consensus 523 ~~~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~--g---~~~~~~~Lf~G~R~~~~d~ly~de 596 (669)
+.|.|.+|.|.| .+|.++.+|+||||+|||||||++|+++++....+ + ...++++||||||+.+ |++|++|
T Consensus 129 --d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~e 205 (304)
T 2bmw_A 129 --SEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEE 205 (304)
T ss_dssp --CEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHH
T ss_pred --CEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHH
Confidence 899999999965 56766678999999999999999999987653211 1 0247899999999987 9999999
Q ss_pred HHhhHhcCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 597 LNNFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 597 l~~~~~~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
|+++.+... .+++++++||++. .+.|||+++.++.+.+++++. .++.||+||| ++|+++|+++|.+++.+
T Consensus 206 l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~ 281 (304)
T 2bmw_A 206 LEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAK 281 (304)
T ss_dssp HHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHH
Confidence 999988754 7789999999853 478999999988888877664 4689999999 78999999999998765
No 11
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=2.1e-33 Score=297.98 Aligned_cols=274 Identities=21% Similarity=0.347 Sum_probs=202.9
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
|...+|+.++|+.+.+|+.++....++||+|+.++ .+.|.+|+.++|.|+..+.. +. .+.
T Consensus 10 ~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~GQ~~~i~~~~~~~~----------~~--------~~~- 69 (316)
T 3jqq_A 10 YTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-LFKYLEGHTCGIIPYYNELD----------NN--------PNN- 69 (316)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-CCCCCTTCEEEECTTCC---------------------------
T ss_pred ecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-CcceecCcEeEEECCCcccc----------cc--------ccc-
Confidence 67799999999999999988877899999999865 69999999999999876422 00 000
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
+.+-|. .++-++. ++ ..+ ++.
T Consensus 70 --------~~~~~~---------~~~~~~~------------~~---------~h~------------------~~~--- 90 (316)
T 3jqq_A 70 --------QINKDH---------NIINTTN------------HT---------NHN------------------NIA--- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cccccc---------ccccccc------------cc---------ccc------------------ccc---
Confidence 000000 0000000 00 000 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCC---CCCccCCcccHhhhhcCCCCCCCCcc
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP---TGRIHKGVCSTWMKNAIPLEGNGDCS 525 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~---~g~~~~G~~S~~L~~l~~g~~~~~~~ 525 (669)
. ...- +...+|+|||+|+|.. +.++|+|+++.|..+ .++.+.|.||+||+++++| +
T Consensus 91 ------~------~~~~-g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~G------d 149 (316)
T 3jqq_A 91 ------L------SHIK-KQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIN------D 149 (316)
T ss_dssp -------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTT------C
T ss_pred ------c------ccCC-CcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCC------C
Confidence 0 0011 4568999999999964 689999998766432 2345689999999999999 8
Q ss_pred EEEEEEeCCCcccCCC---CCCCEEEEecCcccchHHHHHHHHHHHhhc------CCCCCCEEEEEeecCCCcccccHHH
Q 005924 526 WAPIFIRPSNFKLPAN---PSVPIIMVGPGTGLAPFRGFLQERMALKQD------GAQLGPALLFFGCRNRRMDFIYEDE 596 (669)
Q Consensus 526 ~v~v~~~~g~F~lp~~---~~~piImIa~GTGIAPfrsflq~r~~~~~~------g~~~~~~~Lf~G~R~~~~d~ly~de 596 (669)
.|.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||||+.+ |++|.+|
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~e 228 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNE 228 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHH
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHH
Confidence 9999999999999876 368999999999999999999998752210 01347999999999998 9999999
Q ss_pred HHhhHhcCC-ccEEEEEEecCCC---CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 597 LNNFEEEGV-ISELILAFSREGS---QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 597 l~~~~~~g~-~~~l~~afSR~~~---~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
|+++.+... .+++++++||++. .++|||+.+.+....+++++. +++.||+||| +.|++++.++|.+.
T Consensus 229 L~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~ 300 (316)
T 3jqq_A 229 LEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH 300 (316)
T ss_dssp HHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-
T ss_pred HHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 999988754 6789999999853 678999999998888888764 5899999999 89999999998753
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=4.1e-33 Score=294.84 Aligned_cols=250 Identities=27% Similarity=0.476 Sum_probs=208.5
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 005924 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (669)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (669)
.|+...|+.++|+.+++++..+...+++|++|+.+ ..+.|+||.||.|.++...
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~~------------------------- 80 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADGED------------------------- 80 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSBC-------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCCcC-------------------------
Confidence 47778899999999999998766678999999965 4789999999999654310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHH
Q 005924 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (669)
Q Consensus 368 ~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 447 (669)
..|
T Consensus 81 -----------------------------------------------------------~~g------------------ 83 (310)
T 3vo2_A 81 -----------------------------------------------------------KNG------------------ 83 (310)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCc
Q 005924 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (669)
Q Consensus 448 l~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (669)
-++++|+|||+|+|.. .++.++|+|+++.+.++.++.+.|.||+||+++++|
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G------ 138 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 138 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT------
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCC------
Confidence 1236899999999963 368999999988887777777889999999999999
Q ss_pred cEEEEEEeCCCc-ccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhHh
Q 005924 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (669)
Q Consensus 525 ~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~~ 602 (669)
+.|.|.+|.|.| .+|.++.+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|++||+++.+
T Consensus 139 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 217 (310)
T 3vo2_A 139 ADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKE 217 (310)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHH
Confidence 899999999965 467666789999999999999999999987421111 1137899999999988 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 603 ~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
.+. ++++++++||++. .++|||+++.+..+.+++++. +++.||+||| ++|+++|+++|.+++.+
T Consensus 218 ~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~ 287 (310)
T 3vo2_A 218 MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAK 287 (310)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHH
Confidence 864 7899999999864 578999999998888888775 6889999999 89999999999999865
No 13
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=4e-33 Score=295.27 Aligned_cols=250 Identities=29% Similarity=0.497 Sum_probs=206.2
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 005924 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (669)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (669)
.++..+|+.++|+.+++++..++++++++++|+.++. +.|+||++|.|+++|..
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------- 84 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------- 84 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC-------------------------
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC-------------------------
Confidence 4567788999999999999877778999999998764 89999999999876521
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHH
Q 005924 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (669)
Q Consensus 368 ~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 447 (669)
.+|
T Consensus 85 -----------------------------------------------------------~~g------------------ 87 (314)
T 1fnb_A 85 -----------------------------------------------------------KNG------------------ 87 (314)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCc
Q 005924 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (669)
Q Consensus 448 l~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (669)
.+.++|+|||+|+|.. .++.++|+|+.+.|.++.|+...|.+|+||+++++|
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~G------ 142 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG------ 142 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTT------
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCC------
Confidence 1136899999999863 358899999987777766666789999999999999
Q ss_pred cEEEEEEeCCCc-ccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhHh
Q 005924 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (669)
Q Consensus 525 ~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~~ 602 (669)
+.|.|.+|.|+| .+|.++.+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|++||+++.+
T Consensus 143 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 143 AEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 899999999976 566656789999999999999999999887421101 0146899999999987 9999999999988
Q ss_pred cCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 603 ~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
.+. ++++++++||++. .++||++++.+....+++.+. +++.||+||| ++|+++|.++|.+++++
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~ 291 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAA 291 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHT
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHH
Confidence 764 6789999999754 478999999988777777664 6789999999 78999999999998764
No 14
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.98 E-value=1.6e-31 Score=292.56 Aligned_cols=251 Identities=26% Similarity=0.407 Sum_probs=204.9
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
|....|+.++|+.+++++...++++++||+|+.++..+.|+||++|.|++++..
T Consensus 117 ~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~-------------------------- 170 (402)
T 2b5o_A 117 YRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED-------------------------- 170 (402)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE--------------------------
T ss_pred ccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC--------------------------
Confidence 567788999999999999877778999999998865699999999999876521
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
..|
T Consensus 171 ----------------------------------------------------------~~g------------------- 173 (402)
T 2b5o_A 171 ----------------------------------------------------------KNG------------------- 173 (402)
T ss_dssp ----------------------------------------------------------TTT-------------------
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCC-CCccCCcccHhhhhcCCCCCCCCc
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGDC 524 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~-g~~~~G~~S~~L~~l~~g~~~~~~ 524 (669)
.+.++|+|||+|+|.. .++.++|+|+++.|.+|. ++...|.||+||+++++|.
T Consensus 174 ------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~----- 230 (402)
T 2b5o_A 174 ------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGT----- 230 (402)
T ss_dssp ------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTC-----
T ss_pred ------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCC-----
Confidence 0136899999999863 258899999987766543 4456799999999998871
Q ss_pred cEEEEEEeCCCc-ccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhHh
Q 005924 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (669)
Q Consensus 525 ~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~~~~~ 602 (669)
+.|.|.+|.|.| .+|.++.+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|++||+++.+
T Consensus 231 d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~ 309 (402)
T 2b5o_A 231 DDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAA 309 (402)
T ss_dssp CCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHH
T ss_pred ceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHH
Confidence 389999999975 567666789999999999999999999886421100 0147899999999987 9999999999988
Q ss_pred cCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 603 ~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
.+. ++++++++||++. .++|||++|.+..+.+++++. .+++||+||| ++|+++|.++|.++..+
T Consensus 310 ~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~ 379 (402)
T 2b5o_A 310 ENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEK 379 (402)
T ss_dssp HCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHH
T ss_pred hCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHH
Confidence 764 7889999999753 478999999998888888774 5789999999 88999999999988754
No 15
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.97 E-value=6.9e-31 Score=277.99 Aligned_cols=254 Identities=26% Similarity=0.363 Sum_probs=198.3
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCc---------eEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcE
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRS---------CIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELL 359 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~ 359 (669)
+...+|+.++|+.+++|+...++++ +++++|+.++..+.|+||++|.|+++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 5567789999999999998766666 9999999887668999999999988774200
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhh
Q 005924 360 FSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVA 439 (669)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~ 439 (669)
+. | ..|
T Consensus 81 ---------g~------------~--------------------------------------~~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A--------------------------------------KGL--------------- 86 (314)
T ss_dssp ---------HH------------H--------------------------------------TTC---------------
T ss_pred ---------cC------------c--------------------------------------cch---------------
Confidence 00 0 001
Q ss_pred cCCCHHHHHHhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCCCCc-cCCcccHhhhhc
Q 005924 440 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRI-HKGVCSTWMKNA 515 (669)
Q Consensus 440 ~~~~l~dvl~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g~~-~~G~~S~~L~~l 515 (669)
.+| | +++|+|||+|+|.. .++.++|+|+++.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~---------------~-~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV---------------G-YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC---------------B-CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc---------------C-CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 1 47899999999852 367899999987665555543 479999999999
Q ss_pred CCCCCCCCccEEEEEEeCCCcc-cCC-CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCccccc
Q 005924 516 IPLEGNGDCSWAPIFIRPSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 593 (669)
Q Consensus 516 ~~g~~~~~~~~v~v~~~~g~F~-lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly 593 (669)
++| +.|.|.+|.|+|. +|. +..+|+||||+|||||||++|++++.... .....++++||||||+.+ |++|
T Consensus 142 ~~G------d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~-~~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPG------DEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK-LIKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTT------CEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTC-SSCBCSCEEEEEEESSGG-GSCS
T ss_pred CCc------CEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhc-ccCCCCcEEEEEEeCCHH-HHhH
Confidence 999 8999999999764 554 45689999999999999999999887421 001247899999999998 9999
Q ss_pred HHHHHhhHhcCCccEEEEEEecCCC-----CcccccchhHHhHHHHHhcccCCCEEEEe-CCchhhHHHHHHHHHHHH
Q 005924 594 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLSKEGYLYVC-GDAKGMARDVHRTLHTIV 665 (669)
Q Consensus 594 ~del~~~~~~g~~~~l~~afSR~~~-----~k~yVq~~l~~~~~~i~~ll~~~~~iYvC-G~a~~M~~~V~~~L~~i~ 665 (669)
++||+++.+...++++++++||++. .++|||+++.+..+.+++.+.+...+|+| || ++|+++|++.|.++.
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp-~~m~~~v~~~L~~~g 290 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGP-KGMEKGVIEEIQKIS 290 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCc-HHHHHHHHHHHHHHH
Confidence 9999999876557889999999743 36899999998877777666333344999 99 899999999998864
No 16
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.97 E-value=4e-30 Score=271.78 Aligned_cols=251 Identities=25% Similarity=0.396 Sum_probs=198.1
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 005924 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (669)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (669)
++...++.++|+..+.++.++...++++++|..+. .+.|+||.+|.|..+... .
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------~- 76 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN------------------------P- 76 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBC------------------------T-
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCc------------------------c-
Confidence 55677899999999999865555689999999875 689999999988543210 0
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHhhcCCCHHHHH
Q 005924 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (669)
Q Consensus 369 ~~~~~~~~~~~~p~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 448 (669)
. ..|
T Consensus 77 ----------------------------~-----------------------------~~g------------------- 80 (311)
T 3lo8_A 77 ----------------------------K-----------------------------KPG------------------- 80 (311)
T ss_dssp ----------------------------T-----------------------------STT-------------------
T ss_pred ----------------------------c-----------------------------cCC-------------------
Confidence 0 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCceeccccCCCCC---CCCeEEEEEEEEEecCCCC----CccCCcccHhhhhcCCCCCC
Q 005924 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG----RIHKGVCSTWMKNAIPLEGN 521 (669)
Q Consensus 449 ~~fps~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~i~v~vv~~~~~~g----~~~~G~~S~~L~~l~~g~~~ 521 (669)
.+.++|+|||+|+|.. .++.++|+|+++.+..+.. +...|.+|+||+++++|
T Consensus 81 ------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 139 (311)
T 3lo8_A 81 ------------------APQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG--- 139 (311)
T ss_dssp ------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT---
T ss_pred ------------------CCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc---
Confidence 1247899999999964 2578999999764433321 23679999999999999
Q ss_pred CCccEEEEEEeCCCcccCC--CCCCCEEEEecCcccchHHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHH
Q 005924 522 GDCSWAPIFIRPSNFKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELN 598 (669)
Q Consensus 522 ~~~~~v~v~~~~g~F~lp~--~~~~piImIa~GTGIAPfrsflq~r~~~~~~g-~~~~~~~Lf~G~R~~~~d~ly~del~ 598 (669)
+.|.|.+|.|.|.+.. +..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+
T Consensus 140 ---d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~ 215 (311)
T 3lo8_A 140 ---DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFT 215 (311)
T ss_dssp ---CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHH
T ss_pred ---CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHHH
Confidence 8999999999776533 35689999999999999999999887522111 1136899999999988 999999999
Q ss_pred hhHhcCC-ccEEEEEEecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHHHHh
Q 005924 599 NFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 667 (669)
Q Consensus 599 ~~~~~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 667 (669)
++.+.+. .+++++++||++. .++||++.+.+..+.+++++.+++.||+||| ++|+++|+++|.+++.+
T Consensus 216 ~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~ 288 (311)
T 3lo8_A 216 SYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAER 288 (311)
T ss_dssp HHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHh
Confidence 9998764 7789999999864 4789999999988888777777899999999 89999999999999865
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=4.5e-28 Score=238.35 Aligned_cols=147 Identities=30% Similarity=0.630 Sum_probs=131.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.+++++|+|+|+|||||++|++|++.+.+. |+.+++++++++. ++ +.+++.+||++||| +|++|+++..|
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~v~~l~~~~-~~------l~~~d~vi~g~~Ty-~G~~p~~~~~f 89 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSK--GFAPQVATLDSHA-GN------LPREGAVLIVTASY-NGHPPDNAKQF 89 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTT--TCCCEEEEGGGST-TC------CCSSSEEEEEECCB-TTBCCTTTHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhC--CCceEEeeHHHhh-hh------hhhCCeEEEEEeec-CCCcCHHHHHH
Confidence 467899999999999999999999999877 7889999998853 25 78899999999999 99999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELD 240 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 240 (669)
+++|..... ..|++++|+|||+||++| +|||.+++.++++|+++||+++.+.+++|+..+.+++|.+|.+.+|+.|.
T Consensus 90 l~~L~~~~~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 90 VDWLDQASA--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp HHHHHTCCS--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 999976421 238999999999999999 69999999999999999999999999999854677779999999999996
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.94 E-value=4.4e-27 Score=226.42 Aligned_cols=151 Identities=30% Similarity=0.487 Sum_probs=132.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.|++++|+|+|+||||+++|+.|++.+.+. |+.++++++++++..+ +.+++.+||++||||.|++|+++..|
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~ii~g~pt~g~G~~p~~~~~f 79 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAA--KLNVKLVNAGDYKFKQ------IASEKLLIVVTSTQGEGEPPEEAVAL 79 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHH--TCCCEEEEGGGCCGGG------GGGCSEEEEEEECBGGGBCCGGGHHH
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHC--CCceEEeehhhCCHHH------hccCCeEEEEEcccCCCcCChhHHHH
Confidence 356899999999999999999999999987 7889999999888776 88899999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
+++|.... ...+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|+ +.++++.+|.+++++.|..
T Consensus 80 ~~~l~~~~--~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~--~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 80 HKFLFSKK--APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV--EYQAAASEWRARVVDALKS 155 (167)
T ss_dssp HHHHTSTT--CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT--TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcc--ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCC--CcHHHHHHHHHHHHHHHHh
Confidence 99997531 1238899999999999999999999999999999999999999999884 5789999999999999976
Q ss_pred hhC
Q 005924 242 LLR 244 (669)
Q Consensus 242 ~~~ 244 (669)
.++
T Consensus 156 ~~~ 158 (167)
T 1ykg_A 156 RAP 158 (167)
T ss_dssp CC-
T ss_pred hcC
Confidence 443
No 19
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.93 E-value=3.2e-27 Score=222.32 Aligned_cols=144 Identities=24% Similarity=0.327 Sum_probs=128.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|++++|+|+|+||||+++|++|++++.+. ++.++++++. +..+ +.+++.+||++||||.|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~--~~~~------l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEA--GFTTETLHGP--LLED------LPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHT--TCCEEEECCT--TSCS------SCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHC--CCceEEecCC--CHHH------cccCCeEEEEECccCCCCCChhHHHHH
Confidence 56899999999999999999999999877 7888887654 3444 778899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L 239 (669)
++|.....+ +++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|+.. +.++++.+|.+.+++.|
T Consensus 71 ~~l~~~~~~---l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQKPD---LSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHCCC---TTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhccc---cCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 999764222 889999999999999999999999999999999999999999998764 67899999999999876
No 20
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.93 E-value=1.2e-25 Score=229.91 Aligned_cols=182 Identities=19% Similarity=0.264 Sum_probs=151.1
Q ss_pred CChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEEeC
Q 005924 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~~ 533 (669)
..+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+++ ..|.+|+||+ ++++| +.|.|.+|.
T Consensus 44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~G------d~v~v~gP~ 107 (250)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVG------QVLSVKGPL 107 (250)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSS------SEEEEEEEE
T ss_pred cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCC------CEEEEEcCc
Confidence 4689998887575 67899999999864 57899999743 2599999996 79999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|.++.+..+++||||+|||||||+++++++... + ...+++|+||+|+.+ |++|.+||+++.+....++++.++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T-APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T-CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 99999876568999999999999999999998762 2 457899999999998 999999999998766678899999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
||+++ .++||++.+.+... +. ..+..+|+||| ++|+++|.+.|.+
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~~~---~~-~~~~~vyvCGp-~~m~~~v~~~l~~ 231 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALREDLE---SS-DANPDIYLCGP-PGMIDAACELVRS 231 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHHHH---HS-SSSSEEEEESS-HHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhhhh---cc-cCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98643 46789887764321 11 24679999999 8999999998875
No 21
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.93 E-value=5.6e-25 Score=227.98 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=139.2
Q ss_pred CceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCccc--------CCC
Q 005924 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL--------PAN 541 (669)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~l--------p~~ 541 (669)
.+|+|||+|+|.. ++.++|+|+++.+.+..+....|.+|+||+++++| +.|.|.+|.|.|.+ +.+
T Consensus 64 ~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~~~~~~~~~f~l~~~ 136 (275)
T 1umk_A 64 VVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIG------DTIEFRGPSGLLVYQGKGKFAIRPD 136 (275)
T ss_dssp EEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTT------CEEEEEEEECSEEEEETTEEEECSS
T ss_pred EEeccccCCccCC-CCeEEEEEEEeccCcccccCCCChhHHHHhcCCCC------CEEEEEcCccceEecCCcccccccc
Confidence 5799999999864 68899999876443322233569999999999999 89999999998754 321
Q ss_pred --------CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC-ccEEEEE
Q 005924 542 --------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELILA 612 (669)
Q Consensus 542 --------~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~-~~~l~~a 612 (669)
..+++||||+|||||||+++++++.. .+....+++|+||+|+.+ |++|++||+++.+... .++++.+
T Consensus 137 ~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 212 (275)
T 1umk_A 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYT 212 (275)
T ss_dssp TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEE
T ss_pred ccccccccCCceEEEEecCccHhHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEEEEE
Confidence 35799999999999999999998864 212457899999999987 9999999999987643 5788999
Q ss_pred EecCCCC----cccccchhHHhHHHHHhcccCCCEEEEeCCchhhHH-HHHHHHHHH
Q 005924 613 FSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMAR-DVHRTLHTI 664 (669)
Q Consensus 613 fSR~~~~----k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~-~V~~~L~~i 664 (669)
+||++.. ++||++.+.+. ......+++.+|+||| ++|++ ++++.|.+.
T Consensus 213 ~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 213 LDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp ESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred EcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 9987542 56777644322 1111124689999999 88999 899888753
No 22
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=1.9e-25 Score=233.20 Aligned_cols=181 Identities=18% Similarity=0.315 Sum_probs=141.8
Q ss_pred CCceeccccCCCCCCCCeEEEEEEEEEec--C--CC--CCccCCcccHhhhhcCCCCCCCCccEEEEEEeCCCcccCCCC
Q 005924 469 LQPRYYSISSSPRFAPDRVHVTCALVYGP--T--PT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANP 542 (669)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~i~v~vv~~~--~--~~--g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~ 542 (669)
..+|+|||+|+|.. .+.++|+|++.... + |. .+...|.+|+||+++++| +.|.|.+|.|+|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~G------d~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPG------DKVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTT------CEEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCC------CEEEEEecccCCcCCC-C
Confidence 56899999999965 57899999853210 0 00 123469999999999999 8999999999999874 4
Q ss_pred CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEEecCCC----
Q 005924 543 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS---- 618 (669)
Q Consensus 543 ~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~afSR~~~---- 618 (669)
.+|+||||+|||||||++|+++++.. .....+++||||||+.+ |++|++||+++.+.+.+++++.++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~---~~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRT---LKTGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHT---SCCCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHh---cCCCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 68999999999999999999988752 12357999999999998 99999999999887777899999998743
Q ss_pred --CcccccchhHHhHHHHHhcc-cCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 619 --QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 619 --~k~yVq~~l~~~~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.++||++.+.+.. +.++. .+++.+|+||| ++|+++|++.|.+.
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 2567877664321 11111 23578999999 79999999998753
No 23
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.92 E-value=1.2e-25 Score=226.97 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=145.8
Q ss_pred CCChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHh-hhhcCCCCCCCCccEEEEEEeC
Q 005924 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 455 ~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~-L~~l~~g~~~~~~~~v~v~~~~ 533 (669)
...+||++.+.+|...+|+|||+|+|.. ++.++|+|+++. .|.+|++ +.++++| +.|.|.+|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~~~~~l~~G------d~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGASE---------INLYAKAVMDRILKD------HQIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHH------SEEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEcc---------CCchhHHHHHhCCCC------CEEEEeCCc
Confidence 3468999998768788999999999865 578999998652 3666665 6679999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|.++.+..+++||||+|||||||+++++++... + ...+++|+||+|+.+ |++|.+||+++.+...+++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALAR---N-PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHH---C-TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhc---C-CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 99998876678999999999999999999998762 2 457999999999998 999999999998876678899999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhccc-CCCEEEEeCCchhhHHHHHHHH-HH
Q 005924 614 SREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTL-HT 663 (669)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L-~~ 663 (669)
||+++ .++||++.+.+. +.+ +++.+|+||| ++|+++|++.| .+
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 216 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGR-FEMAKIARDLFCSE 216 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH------CSCCTTCEEEEESC-HHHHHHHHHHHHHH
T ss_pred cCCCCCcCCceeeHHHHHHHh------cCCccccEEEEECC-HHHHHHHHHHHHHH
Confidence 98754 356777666542 122 4679999999 88999999988 44
No 24
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.92 E-value=4.2e-25 Score=207.73 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=127.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc-cCCeEEEEEecCCC--CCCChhHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETLAFFMVATYGD--GEPTDNAA 159 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~-~~~~vi~~~sTyG~--G~~p~~a~ 159 (669)
|++++|+|+|+||||+++|+.|++.+.+. |++++++++++++..+ +. +++.+||++||||. |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAG--GHEVTLLNAADASAEN------LADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTT--TCEEEEEETTTBCCTT------TTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhC--CCeEEEEehhhCCHhH------hcccCCEEEEEecccCCCCCCCcHHHH
Confidence 57899999999999999999999999987 8899999999998877 77 99999999999998 99999999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC-CcHHHHHHHHHHHHHH
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPE 238 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~~f~~W~~~l~~~ 238 (669)
.|+++|.... ++++++++||+||+.|+|||.+++.+++.|+++|++++.+...++... ...+.+.+|.+.+++.
T Consensus 73 ~fl~~l~~~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 73 SLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp HHHTTGGGTC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHhhccC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHhh
Confidence 9999997643 889999999999999999999999999999999999998877776532 2667888888877653
No 25
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.92 E-value=5.4e-25 Score=223.84 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=147.0
Q ss_pred CChHHHHHHhcC--C-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p--~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
..+||++.+.+| . ...|+|||+|.+.. .+.++|+|+++ ..|.+|+||+++++| +.|.|.+|
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~---------~~G~~S~~l~~l~~G------d~v~v~gP 105 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVY---------EKGQMSQYIDHLNPG------DFLQVRGP 105 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC---------TTCHHHHHHHTCCTT------CEEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEc---------CCCCcchHhhcCCCC------CEEEEECC
Confidence 367888887644 1 36899999999864 57899999843 259999999999999 89999999
Q ss_pred CCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEE
Q 005924 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (669)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (669)
.|+|.++.+..++++|||+|||||||+++++++.. ......+++|+||+|+.+ |++|++||+++.+....++++.+
T Consensus 106 ~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (243)
T 2eix_A 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIK---NPKEKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYV 181 (243)
T ss_dssp ECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEE
Confidence 99999987666899999999999999999998764 111357899999999988 99999999999887667889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+||+.+ .++||++.+.+. +......++.+|+||| ++|+++|++.|.+
T Consensus 182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~ 232 (243)
T 2eix_A 182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLET 232 (243)
T ss_dssp EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHH
T ss_pred eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHH
Confidence 998643 356787543221 1111124568999999 8899999999875
No 26
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.92 E-value=6.7e-25 Score=223.84 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=149.2
Q ss_pred CCChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE-
Q 005924 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 530 (669)
Q Consensus 455 ~~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 530 (669)
...+||++.+.+|. ..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.|.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTT------CEEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCc------CEEEEec
Confidence 35789998887563 56899999999864 7899988743 259999999999999 899999
Q ss_pred EeCCCcccCCCC-CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc-CCccE
Q 005924 531 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 608 (669)
Q Consensus 531 ~~~g~F~lp~~~-~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~-g~~~~ 608 (669)
+|.|.|.++.++ .++++|||+|||||||+++++++.. .+ ...+++|+||+|+.+ |++|.+||+++.+. +..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKD---LD-RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCS---CT-TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHh---hC-CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 999999988654 6899999999999999999998643 22 357899999999988 99999999999875 34678
Q ss_pred EEEEEecCCC---CcccccchhHHhH-HHHHhc-c-cCCCEEEEeCCchhhHHHHHHHH-HH
Q 005924 609 LILAFSREGS---QKEYVQHKMMDKA-AQLWSL-L-SKEGYLYVCGDAKGMARDVHRTL-HT 663 (669)
Q Consensus 609 l~~afSR~~~---~k~yVq~~l~~~~-~~i~~l-l-~~~~~iYvCG~a~~M~~~V~~~L-~~ 663 (669)
++.++||++. .++||++.+.+.. +....+ + .+++.+|+||| ++|+++|++.| .+
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 228 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHH
Confidence 9999999864 3678888776542 222221 2 25679999999 88999999998 65
No 27
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.91 E-value=1.9e-24 Score=219.71 Aligned_cols=182 Identities=15% Similarity=0.301 Sum_probs=145.0
Q ss_pred CCChHHHHHHhcCC-----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEE
Q 005924 455 TPPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAP 528 (669)
Q Consensus 455 ~~p~~~li~~~~p~-----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~ 528 (669)
...+||++.+.+|. +++|+|||+|+|. .+.++|+|+.+. .++...|.+|+||+ ++++| +.|.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G------~~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKREG----VGSDNPGLVSHYLHNNVKVG------DSVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECTT----TTSSSCCHHHHHHHHHCCTT------CEEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEee----cCCCCCCeehhHHHhcCCCC------CEEE
Confidence 34689998886553 1479999999985 367888887431 12234699999997 59999 8999
Q ss_pred EEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccE
Q 005924 529 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (669)
Q Consensus 529 v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~ 608 (669)
|.+|.|.|.++ +..+|+||||+|||||||+++++++.. .+ ... ++|+||+|+.+ |++|.+||+++.+.. .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~---~~-~~~-v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAK---QN-KSG-VTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHH---TT-CCS-EEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHH---cC-CCe-EEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 99999999988 567899999999999999999999876 22 223 99999999988 999999999998877 778
Q ss_pred EEEEEecCCC---CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 609 LILAFSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 609 l~~afSR~~~---~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
++.++|++.. .+++++..+. .+-..+..+|+||| +.|+++|++.|.+.
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLAL 223 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 9999998665 2456655432 12235789999999 88999999998754
No 28
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.91 E-value=2.8e-24 Score=229.63 Aligned_cols=179 Identities=25% Similarity=0.312 Sum_probs=149.7
Q ss_pred CChHHHHHHhcCC-CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEEEEEEeC
Q 005924 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~-l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~~ 533 (669)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+++ ..|.+|+||+ ++++| +.|.|.+|.
T Consensus 139 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~G------d~v~v~gP~ 201 (338)
T 1krh_A 139 FLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAG------DKMSFTGPF 201 (338)
T ss_dssp CCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTT------CEEEEEEEE
T ss_pred cCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCC------CEEEEECCc
Confidence 4689998887676 5789999999986 58899999843 2599999995 69999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|+|.++.+ .+|+||||+|||||||+++++++.. .+ ...+++||||+|+.+ |++|.++|+++.+....++++.++
T Consensus 202 G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~---~~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 275 (338)
T 1krh_A 202 GSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQ---KG-SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVV 275 (338)
T ss_dssp CSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHH---HC-CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCC-CceEEEEEccccHhHHHHHHHHHHH---cC-CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 99998866 4899999999999999999999876 22 457899999999998 999999999998877778899999
Q ss_pred ecCCC---CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~---~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
||++. .++||++.+.+.. + -..+..+|+||| ++|+++|++.|.+
T Consensus 276 s~~~~~~~~~g~v~~~l~~~~--~---~~~~~~vy~CGp-~~m~~~v~~~l~~ 322 (338)
T 1krh_A 276 AHAESQHERKGYVTGHIEYDW--L---NGGEVDVYLCGP-VPMVEAVRSWLDT 322 (338)
T ss_dssp TTCCSSSSEESCSGGGCCGGG--G---GGGCSEEEEEEE-HHHHHHHHHHHHH
T ss_pred ecCCCCCCccCccCHHHHHhh--c---ccCCcEEEEECC-HHHHHHHHHHHHH
Confidence 99764 3578888775321 1 124678999999 8999999999875
No 29
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.91 E-value=5.8e-24 Score=231.97 Aligned_cols=179 Identities=15% Similarity=0.245 Sum_probs=144.6
Q ss_pred CChHHHHHHhcCC-----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEE
Q 005924 456 PPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (669)
Q Consensus 456 ~p~~~li~~~~p~-----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (669)
..+||++.+.+|. .++|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +++| +.|.|
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~G------d~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVG------DVVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTT------CEEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCC------CEEEE
Confidence 4678888886552 3589999999986 47899998833 15999999997 9999 89999
Q ss_pred EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEE
Q 005924 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (669)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l 609 (669)
.+|.|.|.++.+..+|+||||+|||||||+++++++... + ...+++|+||+|+.+ |++|++||+++.+...++++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA---G-HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 999999999866678999999999999999999998762 2 457899999999999 99999999999988777889
Q ss_pred EEEEecCCCC---------cccccchhHHhHHHHHhc-ccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 610 ILAFSREGSQ---------KEYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 610 ~~afSR~~~~---------k~yVq~~l~~~~~~i~~l-l~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++++||++.. .++++... +.+. ..+++.+|+||| .+|+++|++.|.+
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 377 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVD 377 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 9999987532 23333211 1111 113789999999 8899999998865
No 30
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.90 E-value=1.6e-23 Score=228.95 Aligned_cols=183 Identities=14% Similarity=0.261 Sum_probs=146.9
Q ss_pred CChHHHHHHhc--C--C---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhh-hcCCCCCCCCccEE
Q 005924 456 PPIGVFFAAVA--P--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWA 527 (669)
Q Consensus 456 ~p~~~li~~~~--p--~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v 527 (669)
..+||++.+.+ | . .++|+|||+|+|. ++.++|+|+.... .+....|.+|+||+ ++++| +.|
T Consensus 184 ~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~G------d~v 252 (399)
T 4g1v_A 184 ITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVG------DEI 252 (399)
T ss_dssp CCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTT------CEE
T ss_pred CCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEeccC---CCCCCCCEehhHHHhCCCCC------CEE
Confidence 35788888753 4 3 4689999999985 4779998874321 11124799999997 69999 899
Q ss_pred EEEEeCCCcccCCC----CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc
Q 005924 528 PIFIRPSNFKLPAN----PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (669)
Q Consensus 528 ~v~~~~g~F~lp~~----~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~ 603 (669)
.|.+|.|.|.++.+ ..+|+||||+|||||||+++++++... + ..++++|+||+|+.+ |++|.++|+++.+.
T Consensus 253 ~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~ 327 (399)
T 4g1v_A 253 KLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKC---N-PNRPIYWIQSSYDEK-TQAFKKHVDELLAE 327 (399)
T ss_dssp EEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHH---C-TTSCEEEEEEESSST-TSTTHHHHHHHHTT
T ss_pred EEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHc---C-CCCCEEEEEecCCHH-HhhhHHHHHHHHHh
Confidence 99999999999876 578999999999999999999998762 2 457999999999988 99999999999988
Q ss_pred CCccEEEEEEecCCCCcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
..++++++++|++. ++++. +.+.+.+.+++.+|+||| .+|+++|++.|.+.
T Consensus 328 ~~~~~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 328 CANVDKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp CSSEEEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 77889999999864 45542 223334455889999999 89999999998653
No 31
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.90 E-value=3.9e-24 Score=221.69 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=146.9
Q ss_pred CChHHHHHHhcCC----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE-
Q 005924 456 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 530 (669)
Q Consensus 456 ~p~~~li~~~~p~----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 530 (669)
..+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.|.|.
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 106 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVG------EQIILRP 106 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCC------CEEEEee
Confidence 4678988886552 36899999999863 7888888743 259999999999999 899999
Q ss_pred EeCCCcccCCCC-CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHH-hhHh-----c
Q 005924 531 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE-----E 603 (669)
Q Consensus 531 ~~~g~F~lp~~~-~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~-~~~~-----~ 603 (669)
+|.|.|.++.++ .++++|||+|||||||+++++++.. .+ ...+++|+||+|+.+ |++|.+||+ ++.+ .
T Consensus 107 gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 181 (272)
T 2bgi_A 107 KPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEA---YE-KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGE 181 (272)
T ss_dssp EEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGG---GT-SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTT
T ss_pred CCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhc
Confidence 899999987653 5899999999999999999988653 21 357899999999998 999999999 8876 3
Q ss_pred --CCccEEEEEEecCCC-CcccccchhHHhH-HHHHhc--c-cCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 604 --GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 604 --g~~~~l~~afSR~~~-~k~yVq~~l~~~~-~~i~~l--l-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+..++++.++||+.. .++||++.+.+.. .....+ + .+++.+|+||| ++|+++|.+.|.+
T Consensus 182 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 247 (272)
T 2bgi_A 182 LVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLES 247 (272)
T ss_dssp TSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHH
Confidence 356788999999743 4678888776532 122111 2 25689999999 8999999998864
No 32
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.90 E-value=5.7e-24 Score=219.24 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=137.7
Q ss_pred CChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEEe
Q 005924 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (669)
Q Consensus 456 ~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (669)
..+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++++| +.|.|.+|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~S~~l~~l~~G------d~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESG------AKVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTT------CEEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEe---------cCCchHHHHhcCCCC------CEEEEEcc
Confidence 3678888886564 68999999999864 57899999843 258999999999999 89999999
Q ss_pred CCC-cccCCC-CCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEE
Q 005924 533 PSN-FKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (669)
Q Consensus 533 ~g~-F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (669)
.|+ |.++.+ ..+|+||||+|||||||+++++++... ..+++||||+|+.+ |++|++||+++... +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~------~~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKT------GCQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHH------TCEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHc------CCeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 997 999865 468999999999999999999998752 27899999999998 99999999987543 344
Q ss_pred EEEecCCC--CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 611 LAFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 611 ~afSR~~~--~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++ ++++. .++||++.+.+ .+.+++.+|+||| +.|+++|++ |.+
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~-------~~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNE-------IDFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHH-------CCSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred EE-ECCCCCcceeehHHHHHh-------hccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 43 45432 45788875543 2445789999999 889999998 753
No 33
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.90 E-value=5.4e-24 Score=219.86 Aligned_cols=193 Identities=15% Similarity=0.211 Sum_probs=144.0
Q ss_pred CChHHHHHHhcC---CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCC-ccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p---~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+..+ ...+|+|||+|++.. ++.++|+|+++.. ...++ ...|.+|+||+++++| +.|.|.+
T Consensus 43 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~G------d~v~v~g 114 (270)
T 2cnd_A 43 LPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVG------SYIDVKG 114 (270)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCC------CEEEEEC
Confidence 467888877533 246899999999864 5889999986521 11111 1359999999999999 8999999
Q ss_pred eCCC--------cccCC--CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhH
Q 005924 532 RPSN--------FKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 601 (669)
Q Consensus 532 ~~g~--------F~lp~--~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~ 601 (669)
|.|. |.++. +..+|+||||+|||||||+++++++.... .....+++||||+|+.+ |++|++||+++.
T Consensus 115 P~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~--~~~~~~v~l~~~~r~~~-d~~~~~el~~l~ 191 (270)
T 2cnd_A 115 PLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQ--PEDHTEMHLVYANRTED-DILLRDELDRWA 191 (270)
T ss_dssp EECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTT--TTCCCEEEEEEEESCGG-GCTTHHHHHHHH
T ss_pred CcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcC--CCCCcEEEEEEEcCCHH-HcchHHHHHHHH
Confidence 9986 66764 24689999999999999999999987521 11357899999999998 999999999998
Q ss_pred hcCC-ccEEEEEEecC---CC----CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHH-HHHHHHH
Q 005924 602 EEGV-ISELILAFSRE---GS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHT 663 (669)
Q Consensus 602 ~~g~-~~~l~~afSR~---~~----~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~-V~~~L~~ 663 (669)
+... .++++.++||+ +. .++||++.+.+. .......++.+|+||| ++|+++ +++.|.+
T Consensus 192 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 192 AEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 7643 56788899883 21 256787754332 1111223568999999 889997 5777754
No 34
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.90 E-value=1.8e-23 Score=228.69 Aligned_cols=186 Identities=19% Similarity=0.272 Sum_probs=144.8
Q ss_pred CChHHHHHHhcC--C---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhh-cCCCCCCCCccEEEE
Q 005924 456 PPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (669)
Q Consensus 456 ~p~~~li~~~~p--~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (669)
..+||++.+.+| . .++|+|||+|+|. .+.++|+|+.+. .++.+.|.+|+||++ +++| +.|.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~----~~~~~~G~~S~~L~~~l~~G------d~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVG------DQVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCTT------CEEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECC----CCCCCCCeehHHHhhCCCCC------CEEEE
Confidence 467888887644 2 3579999999985 478999988542 112336999999995 9999 89999
Q ss_pred EEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEE
Q 005924 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (669)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l 609 (669)
.+|.|.|.++.+..+|+||||+|||||||+++++++.. + ...+++|+||+|+.+ |++|++||+++.+...++++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~----~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ----A-PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC----S-SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh----C-CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 99999999976667899999999999999999998763 1 457899999999999 99999999999987777889
Q ss_pred EEEEecCCCCc----ccccc-hhHHhHHHHHh--cccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 610 ILAFSREGSQK----EYVQH-KMMDKAAQLWS--LLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 610 ~~afSR~~~~k----~yVq~-~l~~~~~~i~~--ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
++++||++... .|.++ ++... .+.+ .+ +++.+|+||| ++|+++|++.|.+
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~-~~~~vyvCGp-~~m~~~v~~~L~~ 383 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILL-PDADYYICGP-IPFMRMQHDALKN 383 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCC-TTCEEEEESS-HHHHHHHHHHHHH
T ss_pred EEEECCCCcccccccccCcCCCcCHH--HHhhccCC-CCCEEEEeCC-HHHHHHHHHHHHH
Confidence 99999875422 12222 22111 0111 22 3789999999 8899999998875
No 35
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.90 E-value=4.8e-24 Score=218.86 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=146.3
Q ss_pred CChHHHHHHhcCC---CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE-E
Q 005924 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-I 531 (669)
Q Consensus 456 ~p~~~li~~~~p~---l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~-~ 531 (669)
..+||++.+.+|. ..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.|.|. +
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~G------d~v~v~~g 93 (257)
T 2qdx_A 31 FKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEG------DELMVSRK 93 (257)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEECSC
T ss_pred cCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCC------CEEEEecC
Confidence 4689998886452 46899999999863 7888888743 259999999999999 899999 7
Q ss_pred eCCCcccCCCC-CCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHH-hhHh-----c-
Q 005924 532 RPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE-----E- 603 (669)
Q Consensus 532 ~~g~F~lp~~~-~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~-~~~~-----~- 603 (669)
|.|.|.++..+ .+++||||+|||||||+++++++.... ...+++|+||+|+.+ |++|.+||+ ++.+ .
T Consensus 94 p~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~~ 168 (257)
T 2qdx_A 94 PTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE----RYEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGDQ 168 (257)
T ss_dssp CBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH----HCSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHH
T ss_pred CCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC----CCCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhcc
Confidence 89999987643 589999999999999999999876522 246899999999998 999999999 8865 2
Q ss_pred -CCccEEEEEEecCCC-CcccccchhHHhH-HHHHhc--c-cCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 604 -GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 604 -g~~~~l~~afSR~~~-~k~yVq~~l~~~~-~~i~~l--l-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+..++++.++||+.. .+++|++.+.+.. .+...+ + ..++.+|+||| ++|+++|.+.|.+
T Consensus 169 ~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 233 (257)
T 2qdx_A 169 VKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDS 233 (257)
T ss_dssp HHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHH
Confidence 245678899999743 4678888776532 222111 2 25689999999 7999999998875
No 36
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.89 E-value=2.7e-24 Score=222.45 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=144.0
Q ss_pred CChHHHHHHhcC---CCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEE-E
Q 005924 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-I 531 (669)
Q Consensus 456 ~p~~~li~~~~p---~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~-~ 531 (669)
..+||++.+.+| ...+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.|. +
T Consensus 47 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~g 109 (271)
T 4fk8_A 47 FNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVG------DPVLIGKK 109 (271)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEESC
T ss_pred cCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCC------CEEEEecC
Confidence 468999888655 24589999999985 36788888733 259999999999999 899999 9
Q ss_pred eCCCcccCC-CCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCC-----
Q 005924 532 RPSNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV----- 605 (669)
Q Consensus 532 ~~g~F~lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~----- 605 (669)
|.|.|.++. +..++++|||+|||||||+++++++.... ...+++|+||+|+.+ |++|.+||+++.+...
T Consensus 110 P~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (271)
T 4fk8_A 110 PTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE----RFDKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGDV 184 (271)
T ss_dssp CBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH----HCSEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHHH
T ss_pred CCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCcccccc
Confidence 999999875 35689999999999999999999876532 346899999999998 9999999999887654
Q ss_pred ---ccEEEEEEecCCC-CcccccchhHHhHHHHHh-----cccCCCEEEEeCCchhhHHHHHHHHHHH
Q 005924 606 ---ISELILAFSREGS-QKEYVQHKMMDKAAQLWS-----LLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (669)
Q Consensus 606 ---~~~l~~afSR~~~-~k~yVq~~l~~~~~~i~~-----ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (669)
.++++.++||++. .+++|++.+.+.. .+.. +..+++.+|+||| +.|+++|++.|.+.
T Consensus 185 ~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~ 250 (271)
T 4fk8_A 185 IREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKA 250 (271)
T ss_dssp HHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHT
T ss_pred ccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 4678889998764 4678887775531 1111 1235789999999 89999999998753
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.89 E-value=4.6e-23 Score=193.40 Aligned_cols=142 Identities=24% Similarity=0.306 Sum_probs=126.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhcc-CCeEEEEEecCCCCC--CChhHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGE--PTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vi~~~sTyG~G~--~p~~a~~ 160 (669)
|+++|+|+|+||||+++|+.|++.+.+. |++++++++++.+..+ +.+ ++.+||++||||.|. +|++++.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~--g~~v~~~~~~~~~~~~------l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADA--GYEVDSRDAASVEAGG------LFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHH--TCEEEEEEGGGCCSTT------TTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhc--CCeeEEEehhhCCHHH------hcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 5799999999999999999999999987 8889999999887776 788 999999999999999 9999999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC-CcHHHHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPE 238 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~~f~~W~~~l~~~ 238 (669)
|++++.... ++++++++||+||++|++||.+.+.+++.|+++|++++.+...+|... ...+.+.+|.+++++.
T Consensus 73 fl~~l~~~~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 73 LFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGA 146 (147)
T ss_dssp HHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHhh
Confidence 999997643 889999999999999999999999999999999999998877776542 2667899999887653
No 38
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.88 E-value=8e-23 Score=216.98 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=137.1
Q ss_pred CChHHHHHHhcCCCCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCc-ccHhhh-hcCCCCCCCCccEEEEEEeC
Q 005924 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGV-CSTWMK-NAIPLEGNGDCSWAPIFIRP 533 (669)
Q Consensus 456 ~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~-~S~~L~-~l~~g~~~~~~~~v~v~~~~ 533 (669)
..+|||+.+.+|...+|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++++| +.|.|.+|.
T Consensus 39 ~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~G------d~v~v~gP~ 102 (321)
T 2pia_A 39 FEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEG------DAVEVSLPR 102 (321)
T ss_dssp CCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTT------CEEEECCCB
T ss_pred CCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEe---------cCCcchhHHHHhcCCCC------CEEEEeCCc
Confidence 468999988767668999999999864 57899998733 2477 999999 79999 899999999
Q ss_pred CCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEEEE
Q 005924 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (669)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~af 613 (669)
|.|.++.+ .+++||||+|||||||+++++++.. .+ ..+++|+||+|+.+ |++|.+||+++. .+.. +.+.+
T Consensus 103 g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~---~~--~~~v~l~~~~r~~~-~~~~~~el~~l~-~~~~--~~~~~ 172 (321)
T 2pia_A 103 NEFPLDKR-AKSFILVAGGIGITPMLSMARQLRA---EG--LRSFRLYYLTRDPE-GTAFFDELTSDE-WRSD--VKIHH 172 (321)
T ss_dssp CCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHH---HC--SSEEEEEEEESCGG-GCTTHHHHHSTT-TTTT--EEEEE
T ss_pred cccccCCC-CCCEEEEEecccHhHHHHHHHHHHH---cC--CCcEEEEEEECChh-hhHHHHHHhcCc-cCCe--EEEEE
Confidence 99999865 6799999999999999999999876 22 27899999999998 999999999886 3333 44556
Q ss_pred ecCCC-CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 614 SREGS-QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 614 SR~~~-~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
+++.. .+.++++.+ +....+..+|+||| ++|+++|++.|.+
T Consensus 173 ~~~~~~g~~~~~~ll--------~~~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 173 DHGDPTKAFDFWSVF--------EKSKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp CTTCTTSCCCHHHHH--------SSCCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred CCCcccCccCHHHHh--------cccCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 66532 223343322 22235689999999 8899999998865
No 39
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.86 E-value=1.6e-22 Score=197.16 Aligned_cols=146 Identities=21% Similarity=0.405 Sum_probs=124.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC-------
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT------- 155 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p------- 155 (669)
|++++|+|+|+||||+++|++|++.+... ++++++++++.+..+ +.++++|||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~~~------l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADVAD------FMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCHHH------HHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCHHH------HhhCCeEEEEEeeCCCCCCCccccccc
Confidence 56899999999999999999999998632 446778888776655 78899999999999999999
Q ss_pred -hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcc-h-HHHHHHHHHHHHHHHHcCCeEEecc-----------------
Q 005924 156 -DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL----------------- 215 (669)
Q Consensus 156 -~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~----------------- 215 (669)
+++..|+++|.... ++++++++||+|++. | ++||.+.+.+++.|+++|++++.+.
T Consensus 72 ~~~~~~f~~~l~~~~-----l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIADQD-----FSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTTCC-----CTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhhcc-----CCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 99999999987533 889999999999998 8 4899999999999999999998863
Q ss_pred --eeecC-CC---CcHHHHHHHHHHHHHHHHhh
Q 005924 216 --GLGDD-DQ---CIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 216 --g~gD~-~~---~~e~~f~~W~~~l~~~L~~~ 242 (669)
|++.+ .+ ..++++++|.+++|++|...
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 66533 22 35899999999999998753
No 40
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.86 E-value=4.8e-22 Score=193.28 Aligned_cols=143 Identities=20% Similarity=0.364 Sum_probs=121.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC--------
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-------- 155 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-------- 155 (669)
++++|+|+|+||||+++|++|++.+.. ++.++++++++.+.++ +.+++.|||++||||.|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~---~~~v~~~~~~~~~~~~------l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD---ETMSDALNVNRVSAED------FAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT---TTBCCCEEGGGCCHHH------HHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC---CCceEEEEhhhCCHHH------HhcCCEEEEEeccCCCCcCCcccccccc
Confidence 469999999999999999999999853 3457778888776655 88899999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcc-hH-HHHHHHHHHHHHHHHcCCeEEecc------------------
Q 005924 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL------------------ 215 (669)
Q Consensus 156 ~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~------------------ 215 (669)
+++..|+++|.... ++|+++++||+||+. |+ +||.+.+.+++.|+++|++++.+.
T Consensus 72 ~~~~~fl~~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 99999999997533 889999999999998 95 699999999999999999998764
Q ss_pred -ee-ecCCC---CcHHHHHHHHHHHHHHHH
Q 005924 216 -GL-GDDDQ---CIEDDFTAWRELVWPELD 240 (669)
Q Consensus 216 -g~-gD~~~---~~e~~f~~W~~~l~~~L~ 240 (669)
|+ .|.+. ..++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 44 34321 478999999999987764
No 41
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.85 E-value=3e-21 Score=186.59 Aligned_cols=140 Identities=28% Similarity=0.439 Sum_probs=118.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC-CccchhHHhhhccCCeEEEEEecCCCCCC----ChhHH
Q 005924 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEP----TDNAA 159 (669)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~----p~~a~ 159 (669)
+++|+|+|+||||+++|++|++.+... .+++++++++ +..+ +.+++.|||++||||.|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~~~------l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDPQA------LKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCGGG------GGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCChhH------HccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 489999999999999999999999753 3667788877 6556 8889999999999999999 99999
Q ss_pred HHH-HHHhcCCCCCCCCCCceEEEEEecCcc-h-HHHHHHHHHHHHHHHHcCCeEEecc-------------------ee
Q 005924 160 RFY-KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL-------------------GL 217 (669)
Q Consensus 160 ~F~-~~L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~ 217 (669)
.|+ +.|.... ++++++++||+||+. | +|||.+++.+++.|+++|++++.+. ++
T Consensus 71 ~fl~~~l~~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhccccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 8887543 889999999999999 8 6999999999999999999998762 22
Q ss_pred -ecC--CC-CcHHHHHHHHHHHHHHH
Q 005924 218 -GDD--DQ-CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 218 -gD~--~~-~~e~~f~~W~~~l~~~L 239 (669)
.|. .+ ..++.+.+|.+++++.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 122 22 56889999999998776
No 42
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.85 E-value=3.8e-22 Score=191.02 Aligned_cols=138 Identities=22% Similarity=0.401 Sum_probs=115.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
|++++|+|+|+||||+++|++|++.+ |. ++++++++++..+ +.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l-----g~-~~~~~~~~~~~~~------l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI-----GN-AEVVDVAKASKEQ------FNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH-----CS-EEEEEGGGCCHHH------HTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc-----CC-cEEEecccCCHhH------HhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999998 34 7888998887666 888999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcc-hHH-HHHHHHHHHHHHHHcCCeEEecc-------------------eeecCC
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-YEH-FNKIGIVLDEELCKQGGARLVPL-------------------GLGDDD 221 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~-Y~~-f~~~~k~ld~~L~~lGa~~i~~~-------------------g~gD~~ 221 (669)
++|.... ++++++++||+||+. |+| ||.+++.++++|++ ++++.+. +...+.
T Consensus 69 ~~l~~~~-----l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEASD-----FANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTHH-----HHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhhh-----cCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 9886432 789999999999996 974 99999999999987 8877763 343332
Q ss_pred C----CcHHHHHHHHHHHHHHH
Q 005924 222 Q----CIEDDFTAWRELVWPEL 239 (669)
Q Consensus 222 ~----~~e~~f~~W~~~l~~~L 239 (669)
. ..++.+.+|.+++++.|
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~l 163 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGSF 163 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTTC
T ss_pred CCccccCHHHHHHHHHHHHHhh
Confidence 1 35888999999887543
No 43
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.84 E-value=1.7e-21 Score=188.78 Aligned_cols=143 Identities=21% Similarity=0.371 Sum_probs=121.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|+||||+++|+.|++.+... .++++++++.+..+ +.++++|||++|||+.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~~~------l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSKED------LEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCHHH------HHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCChhH------hhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999643 37788888766555 8889999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcc-h-HHHHHHHHHHHHHHHHcCCeEEecc--------------------ee-ecC
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL--------------------GL-GDD 220 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~--------------------g~-gD~ 220 (669)
+|.... ++|+++++||+||+. | ++||.+.+.+.+.|++.|++++... |+ .|.
T Consensus 71 ~l~~~~-----l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 997543 889999999999986 8 7899999999999999999988642 21 232
Q ss_pred CC---CcHHHHHHHHHHHHHHHHh
Q 005924 221 DQ---CIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 221 ~~---~~e~~f~~W~~~l~~~L~~ 241 (669)
+. ..++++.+|.+++++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 21 3578899999999998865
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.84 E-value=1.2e-20 Score=181.28 Aligned_cols=142 Identities=24% Similarity=0.420 Sum_probs=121.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|+||||+++|+.|++.+... .++++++++++.++ +.+++.|||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~~~------l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEVTD------LNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCGGG------GGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCHHH------HhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999643 47889999888776 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcc-hH-HHHHHHHHHHHHHHHcCCeEEecc-------------------ee-ecC-
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL-------------------GL-GDD- 220 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~-gD~- 220 (669)
+|.... ++++++++||+|++. |+ |||.+.+.+++.|+++|++.+... ++ .|.
T Consensus 72 ~l~~~~-----l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred HhhhcC-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 987643 889999999999984 86 899999999999999999988652 22 121
Q ss_pred -C-CCcHHHHHHHHHHHHHHHH
Q 005924 221 -D-QCIEDDFTAWRELVWPELD 240 (669)
Q Consensus 221 -~-~~~e~~f~~W~~~l~~~L~ 240 (669)
. ...++.+.+|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 1 2467889999999998873
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.83 E-value=9.1e-21 Score=182.04 Aligned_cols=142 Identities=25% Similarity=0.420 Sum_probs=121.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
++++|+|+|+||||+++|+.|++.+... +.++++++++++.++ +.+++.+||++|||+.|.+|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~~~------l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADASD------LNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCGGG------GGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCHhH------HhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 4799999999999999999999999632 358899998887766 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcc-hH-HHHHHHHHHHHHHHHcCCeEEecc-------------------ee-ecCC
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL-------------------GL-GDDD 221 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~-gD~~ 221 (669)
+|.... ++|+++++||+|++. |+ +||.+.+.+++.|+++|++.+... ++ .|.+
T Consensus 72 ~l~~~~-----l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhhc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 997543 889999999999995 96 899999999999999999988631 32 2322
Q ss_pred ---CCcHHHHHHHHHHHHHHH
Q 005924 222 ---QCIEDDFTAWRELVWPEL 239 (669)
Q Consensus 222 ---~~~e~~f~~W~~~l~~~L 239 (669)
...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 246889999999998876
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.80 E-value=3.6e-19 Score=165.06 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=109.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCCh-hHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKW 164 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~-~a~~F~~~ 164 (669)
|+|+|+|+||||+++|+.|++.+.+. |++++++++++++.++ +.+++.+||++||||.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIES--GKDVNTINVSDVNIDE------LLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHT--TCCCEEEEGGGCCHHH------HTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEEhhhCCHHH------HhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 57999999999999999999999987 8889999999888766 889999999999999999887 89999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHH
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWREL 234 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~ 234 (669)
|... ++++++++||+++..| |.+.+.++++|+++|++++.+...++..- .. +...+|.+.
T Consensus 73 l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~ 134 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKK 134 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHH
T ss_pred HHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHH
Confidence 9763 7899999999765543 78899999999999999997766665432 22 444455443
No 47
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.79 E-value=9.9e-20 Score=199.07 Aligned_cols=179 Identities=16% Similarity=0.088 Sum_probs=141.7
Q ss_pred HHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhheeeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc------CC
Q 005924 10 VKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA------GK 83 (669)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 83 (669)
.++|.++|+++. ++|+.+||++ ||. +||++.. .+++.|.+ ..
T Consensus 218 ~~~v~~~L~kl~----~Ldi~~I~P~-HGp-------i~r~~~~--------------------~ii~~Y~~w~~~~~~~ 265 (410)
T 4dik_A 218 KNYILEGAEKLS----SLKIKALLPG-HGL-------IWKKDPQ--------------------RLLNHYVSVAKGDPKK 265 (410)
T ss_dssp HHHHHHHHHHHH----TSCCSEEEES-SSC-------BBSSCHH--------------------HHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHh----CCCCCEEecC-Ccc-------hhhcCHH--------------------HHHHHHHHhhcccccc
Confidence 357889999998 5688999999 999 8987764 55555543 35
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecC---CCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL---DDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl---~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
++|+|+|+|+|||||++|+.|++.|.++ |+.+.++++ +..+.++ ++.++.+++.++|+||||+ |++++.+..
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~--Gv~~~~~~~~d~~~~~~s~--i~~~i~~~~~ivlGspT~~-~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEK--GFTPVVYKFSDEERPAISE--ILKDIPDSEALIFGVSTYE-AEIHPLMRF 340 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHT--TCEEEEEEECSSCCCCHHH--HHHHSTTCSEEEEEECCTT-SSSCHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhc--CCceEEEEeccCCCCCHHH--HHHHHHhCCeEEEEeCCcC-CcCCHHHHH
Confidence 6899999999999999999999999988 887766544 4444444 6778899999999999995 667778889
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l 235 (669)
|+..+.... ++||++++|| +|+|.+.+++.+.++|+++|++.+.+. ........++++++-.+.+
T Consensus 341 ~l~~l~~~~-----~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~~-~~~~~~~de~~lee~~~~~ 405 (410)
T 4dik_A 341 TLLEIIDKA-----NYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSFT-EIKGSNMDERKIEEAISLL 405 (410)
T ss_dssp HHHHHHHHC-----CCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEEE-EECSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcc-----cCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECcE-EEECCCCCHHHHHHHHHHH
Confidence 999988765 7899999999 899999999999999999999987554 3322223455555544443
No 48
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.77 E-value=7.1e-19 Score=168.07 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=115.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~ 163 (669)
|+++|+|+|+||||+++|+.|++++.+. |++++++|+.+.+.++ +..++.+++.+||++|||| |.+|. ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKT--GVAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHT--TCCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 5799999999999999999999999887 8889999999888766 5556778999999999996 88775 77999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHh
Q 005924 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 241 (669)
.|.... ++|+++++|| +|+|+|.+.+.+++.|+++|++.+.+...+...- ...+...+|.+.+...|.+
T Consensus 74 ~l~~~~-----l~gk~v~~fg----s~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 74 TIFAAA-----HNKQAIGLFD----SYGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp HHHHHC-----CTTSEEEEEC----CCCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hCCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 887643 7899999999 6777889999999999999999987654443221 2335566777777666654
No 49
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.76 E-value=9.4e-19 Score=166.91 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=117.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC-CccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
..++++|+|+|+||||+++|+.|++.+.+. |++++++|+.+. +.++ +..++.+++.+||++|||+ |.+| +..
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p--~~~ 75 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKT--GVGVDVVDLGAAVDLQE--LRELVGRCTGLVIGMSPAA-SAAS--IQG 75 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHT--TCEEEEEESSSCCCHHH--HHHHHHTEEEEEEECCBTT-SHHH--HHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHC--CCeEEEEECcCcCCHHH--HHHHHHhCCEEEEEcCcCC-CCcc--HHH
Confidence 356899999999999999999999999987 889999999988 7665 5566788999999999996 8876 378
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (669)
|++.|.... ++++++++|| +|+|+|.+.+.+.++|+++|++.+.+...+...- ...+...+|.+.+.+.
T Consensus 76 ~l~~l~~~~-----~~~k~va~fg----s~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~ 146 (159)
T 3fni_A 76 ALSTILGSV-----NEKQAVGIFE----TGGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQW 146 (159)
T ss_dssp HHHHHHHHC-----CTTSEEEEEC----CSSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-----ccCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999887643 7899999999 6788999999999999999999987665544322 2345556777777776
Q ss_pred HHh
Q 005924 239 LDQ 241 (669)
Q Consensus 239 L~~ 241 (669)
+.+
T Consensus 147 ~~~ 149 (159)
T 3fni_A 147 VTR 149 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 50
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.72 E-value=4.8e-18 Score=174.02 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=119.5
Q ss_pred CChHHHHHHhcCC----CCceeccccCCCCCCCCeEEEEEEEEEecCCCCCccCCcccHhhhhcCCCCCCCCccEEEEEE
Q 005924 456 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (669)
Q Consensus 456 ~p~~~li~~~~p~----l~pR~YSIsSsp~~~~~~i~i~v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (669)
..+||++.+.+|. ...|+|||+|.+. +.++|.+.+.. ..|.+|+||+++++| +.|.|.+
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~--------~~G~~S~~l~~l~~G------d~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHD--------TDGPASSWAKTAQVG------ELIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCS--------SCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeC--------CCCcHHHHHhhCCCC------CEEEEec
Confidence 3679999886563 4679999999763 56777776321 138999999999999 8999999
Q ss_pred eCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCccEEEE
Q 005924 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (669)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (669)
|.|.|.++.+ .++++|||+||||||+++++++.. ...++++|+++|+.+ |..+ |+ ....++++.
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~-------~~~~~~~~~~~~~~~-d~~~---l~----~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLP-------NNAVGYAVIEVLSEA-DIQP---LV----HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSC-------TTCEEEEEEEESSGG-GCCC---CC----CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCC-------CCCcEEEEEEECCHH-Hhhc---cc----CCCCcEEEE
Confidence 9999998754 479999999999999999998763 225778999999876 6543 21 123456666
Q ss_pred EEecCCCC-cccccchhHHhHHHHHhc-c-cCCCEEEEeCCchhhHHHHHHHHH
Q 005924 612 AFSREGSQ-KEYVQHKMMDKAAQLWSL-L-SKEGYLYVCGDAKGMARDVHRTLH 662 (669)
Q Consensus 612 afSR~~~~-k~yVq~~l~~~~~~i~~l-l-~~~~~iYvCG~a~~M~~~V~~~L~ 662 (669)
+++.+... ...+. +.+.++ + ..+.++|+||| ++|+++|++.|.
T Consensus 166 ~~~~~~~~~g~~~~-------~~l~~~~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 166 VINPEADPEGRPLV-------ERIAQLPWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp EECSSCCTTCHHHH-------HHHTTSCCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred EeCCCCCcccHHHH-------HHHHhccCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 66544321 11111 122222 2 23568999999 899999999886
No 51
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.72 E-value=3.2e-17 Score=151.07 Aligned_cols=131 Identities=20% Similarity=0.286 Sum_probs=108.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCCh-hHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKW 164 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~-~a~~F~~~ 164 (669)
++|+|+|+||||+++|+.|++.+.+. |++++++++++++.++ +.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAA--GADVESVRFEDTNVDD------VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHT--TCCEEEEETTSCCHHH------HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhC--CCeEEEEEcccCCHHH------HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999887 7889999999887665 889999999999999999888 49999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchHH-HHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHH
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l 235 (669)
+... ++++++++||. |++ ||.+.+.+++.|+++|++.+ +...++...+..+.+.+|.+.+
T Consensus 74 l~~~------l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l 134 (137)
T 2fz5_A 74 LAPK------LKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAA 134 (137)
T ss_dssp HGGG------CSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHH
T ss_pred hhhh------cCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHH
Confidence 8642 88999999994 544 68899999999999999988 4333332211156777777665
No 52
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.69 E-value=1.6e-17 Score=150.59 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=87.0
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L 165 (669)
++|+|+|+||||+++|++|+ +. + + ++++ +. + .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~----~--~---~i~~---~~------~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP----A--V---QIGE---DL------V-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC----E--E---ECCT---TC------C-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc----C--C---CcCc---cc------c-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 21 2 2 2322 22 3 489999999999999999999999865
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchHH-HHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 005924 166 TEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (669)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~ 236 (669)
+++++++|||+||+.|++ ||.+++.++++|.. ...... .+..+....+.+.+|.+.++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~~-~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSKF-ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEEE-ETTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEEE-ecCCCHHHHHHHHHHHHHhc
Confidence 357899999999999987 99999999998743 222222 22211123456788988775
No 53
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.65 E-value=9.2e-17 Score=155.58 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=92.9
Q ss_pred EEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhc---CCCCCCEEEEEeecCCCcccc-cHHHHHhhHhc-
Q 005924 529 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD---GAQLGPALLFFGCRNRRMDFI-YEDELNNFEEE- 603 (669)
Q Consensus 529 v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~---g~~~~~~~Lf~G~R~~~~d~l-y~del~~~~~~- 603 (669)
|.+|.|.|.++....+|+||||+|||||||+++++++...... +....+++|+||+|+.+ +++ |+++|+++.+.
T Consensus 3 v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~ 81 (186)
T 3a1f_A 3 VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQM 81 (186)
T ss_dssp TTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHH
T ss_pred EECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHH
Confidence 4568898876544467999999999999999999998764321 12457899999999998 887 99999999875
Q ss_pred -----CCccEEEEEEecCCC---Cccccc-----------------chhHH--hHHHHHhccc-CCCEEEEeCCchhhHH
Q 005924 604 -----GVISELILAFSREGS---QKEYVQ-----------------HKMMD--KAAQLWSLLS-KEGYLYVCGDAKGMAR 655 (669)
Q Consensus 604 -----g~~~~l~~afSR~~~---~k~yVq-----------------~~l~~--~~~~i~~ll~-~~~~iYvCG~a~~M~~ 655 (669)
...+++++.+|++.. .+.|++ .++.. -.+.+.+.+. .+..||+||| ++|++
T Consensus 82 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~ 160 (186)
T 3a1f_A 82 QERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAE 160 (186)
T ss_dssp HHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHH
T ss_pred hhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHH
Confidence 346688889998632 112222 11100 0111222122 3578999999 89999
Q ss_pred HHHHHHHHH
Q 005924 656 DVHRTLHTI 664 (669)
Q Consensus 656 ~V~~~L~~i 664 (669)
+|+++|.+.
T Consensus 161 ~v~~~l~~~ 169 (186)
T 3a1f_A 161 TLSKQSISN 169 (186)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 54
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.64 E-value=1.6e-16 Score=151.34 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=82.2
Q ss_pred cE-EEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhc
Q 005924 525 SW-APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (669)
Q Consensus 525 ~~-v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~ 603 (669)
+. +.|.+|.|+|.... ..+|++|||+||||||+++++++... .+ .+++|+ |+|+.+ |.+|++||+++..+
T Consensus 5 d~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~---~~---~~v~l~-g~r~~~-d~~~~~el~~l~~~ 75 (158)
T 3lrx_A 5 DSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQE---IG---NDVTTL-HVTFEP-MVILKEELEKAVTR 75 (158)
T ss_dssp -------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHH---HT---CEEEEE-EECBGG-GCCSHHHHHHHSSE
T ss_pred CEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHh---cC---CcEEEE-EeCCHH-HhhHHHHHHHHHhc
Confidence 78 59999999765433 46899999999999999999998764 22 489999 999998 99999999998642
Q ss_pred CCccEEEEEEecCCC--------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 604 GVISELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 604 g~~~~l~~afSR~~~--------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
..+..+++++.. .+++|++.+.+... . .+...+|+||| ++|+++|.+.|.+
T Consensus 76 ---~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~---~--~~~~~vy~CGP-~~mm~~v~~~l~~ 134 (158)
T 3lrx_A 76 ---HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLE---S--EDWDLVFMVGP-VGDQKQVFEVVKE 134 (158)
T ss_dssp ---EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHH---H--SCCSEEEEESC-HHHHHHHHHHHGG
T ss_pred ---eEEEEeeccccccCCCCCCCCcccccHHHHHhhc---c--CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 222222333211 24556554433211 1 14568999999 8999999988764
No 55
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.61 E-value=1.8e-16 Score=147.54 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
+.|++.|+|+|+||||+.+|++|++.+ .+++.+ . +..++.+++++||||.|++|+++.+|
T Consensus 7 ~~m~i~I~Y~S~TGNt~~vA~~l~~~~----------~~~i~~----~------~~~~~~~ilv~pTyG~G~~P~~v~~F 66 (139)
T 1rlj_A 7 SNAMVQIIFDSKTGNVQRFVNKTGFQQ----------IRKVDE----M------DHVDTPFVLVTYTTNFGQVPASTQSF 66 (139)
T ss_dssp HHSCCEEEECCSSSHHHHHHTTSCCSE----------EEETTS----C------SCCCSCEEEEECCBGGGBCCHHHHHH
T ss_pred CCCEEEEEEECCChhHHHHHHHhcccc----------ceEecc----c------cccCCCEEEEEcCcCCCcCcHHHHHH
Confidence 345689999999999999999996420 224432 2 45567899999999999999999988
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~ 238 (669)
++.. +++.++|||+||++| +.||.+++.+++++ |...+... +.+-.....+.+.+|.+.+|..
T Consensus 67 l~~~----------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~-el~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 67 LEKY----------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp HHHH----------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhC----------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceE-EEcCCHHHHHHHHHHHHHHHHH
Confidence 8532 357899999999999 67999999998775 55443321 2221113457788999888754
No 56
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.60 E-value=1.5e-15 Score=141.99 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=83.5
Q ss_pred EEEEEeCCCcccCCCCCCCEEEEecCcccchHHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHhcCCc
Q 005924 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI 606 (669)
Q Consensus 527 v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~g~~~~~~~Lf~G~R~~~~d~ly~del~~~~~~g~~ 606 (669)
+.|.+|.|+|....+ .++++|||+|+||||+++++++... . ..++.|+ |+|+++ |.+|++||+++..+
T Consensus 3 ~~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~---~---~~~v~l~-g~R~~~-~~~~~~el~~l~~~--- 70 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQE---I---GNDVTTL-HVTFEP-MVILKEELEKAVTR--- 70 (142)
T ss_dssp ----CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHH---T---TCEEEEE-EEEEGG-GCCSHHHHHTTSSE---
T ss_pred eeeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHh---c---CCcEEEE-EeCCHH-HhhHHHHHHHHHhh---
Confidence 467889997765543 6899999999999999999998764 2 2579999 999998 99999999998642
Q ss_pred cEEEEEEecCCC--------CcccccchhHHhHHHHHhcccCCCEEEEeCCchhhHHHHHHHHHH
Q 005924 607 SELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (669)
Q Consensus 607 ~~l~~afSR~~~--------~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (669)
..+..+++++.. .+++|.+.+.+.. .. .+...+|+||| ++|++.|.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~-~~~~~vy~CGP-~~Mm~av~~~l~~ 129 (142)
T 3lyu_A 71 HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ES-EDWDLVFMVGP-VGDQKQVFEVVKE 129 (142)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HS-SCCSEEEEESC-HHHHHHHHHHHHH
T ss_pred eEEEEeecccccCCCCCCCCCccchhHHHHHhc----cc-CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 223334444321 1345554443221 11 23468999999 8999999988875
No 57
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.59 E-value=7.2e-16 Score=167.46 Aligned_cols=141 Identities=14% Similarity=0.013 Sum_probs=112.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
+++++|+|+|+||||+++|+.+++.+.+. |+.++++++.+.+..+ +...+.+++.+||++|||+.|.+| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAG--GCEVKLFKLSVSDRND--VIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEEGGGSCHHH--HHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 58999999999999999999999999877 7889999998776655 555678999999999999777776 488899
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc-eeecCCC--CcHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-GLGDDDQ--CIEDDFTAWRELVWP 237 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~-g~gD~~~--~~e~~f~~W~~~l~~ 237 (669)
+++.... ++|+++++|| +|+|+|.+.+.+++.|+++|++.+.+. ...+... ...+.+.+|.+++..
T Consensus 326 ~~l~~~~-----~~~k~~~~~~----s~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 394 (398)
T 1ycg_A 326 DDLVGLR-----PKNKVGLAFG----AYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAA 394 (398)
T ss_dssp HHHHHHC-----CSSCEEEEEE----EESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-----cCCCEEEEEE----eCCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHH
Confidence 9987643 7899999999 578899999999999999999998754 3333221 223444455554443
No 58
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.57 E-value=2.5e-15 Score=163.44 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=118.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
+++++|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +..++.+++.+||++||||.|.+| .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDE--GCTVKLMWCKACHHSQ--IMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEETTTSCHHH--HHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 68999999999999999999999999877 7889999999877655 556678999999999999777765 689999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELD 240 (669)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 240 (669)
+++.... ++++++++|| +|+++|.+.+.+.+.|.++|++.+.+...++... ...+.+.+|.+.+...++
T Consensus 327 ~~l~~~~-----l~~k~~~~f~----t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 397 (402)
T 1e5d_A 327 QYIKGLR-----PQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 397 (402)
T ss_dssp HHHHHTC-----CCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc-----cCCCEEEEEE----cCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 9987643 7899999999 5778899999999999999999887444443221 234566677777766665
Q ss_pred h
Q 005924 241 Q 241 (669)
Q Consensus 241 ~ 241 (669)
+
T Consensus 398 ~ 398 (402)
T 1e5d_A 398 A 398 (402)
T ss_dssp H
T ss_pred h
Confidence 4
No 59
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.49 E-value=3.1e-13 Score=131.86 Aligned_cols=150 Identities=15% Similarity=0.049 Sum_probs=112.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
.|++++|+|+|+||||+.+|+.|++.+.+ . |++++++++.+.+.++ +.+++.+||++||| .|.+|+.++.
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~--g~~v~~~~l~~~~~~~------l~~aD~ii~gsP~y-~g~~~~~lk~ 73 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLE--GTEVRLKHVDEATKED------VLWADGLAVGSPTN-MGLVSWKMKR 73 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTST--TEEEEEEETTTCCHHH------HHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcC--CCeEEEEEhhhCCHHH------HHhCCEEEEEeCcc-CCcCCHHHHH
Confidence 36799999999999999999999999987 6 7889999999887655 88999999999999 9999999999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEec------cee--------ecCC-CCc
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVP------LGL--------GDDD-QCI 224 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~------~g~--------gD~~-~~~ 224 (669)
|++++..... ..++|+++++||. |+.. +.+....+.+.+.|..+|+..+.. ... +.-+ ...
T Consensus 74 fld~~~~~~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 150 (188)
T 2ark_A 74 FFDDVLGDLW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEE 150 (188)
T ss_dssp HHHHTGGGTT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHH
T ss_pred HHHHHhhhhH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHH
Confidence 9999875100 1288999999998 5433 224556677888888899876532 111 1111 112
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 005924 225 EDDFTAWRELVWPELDQLL 243 (669)
Q Consensus 225 e~~f~~W~~~l~~~L~~~~ 243 (669)
.+....|.+.+...+.++.
T Consensus 151 ~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 151 KEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445577777777776653
No 60
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.47 E-value=5.8e-14 Score=152.69 Aligned_cols=145 Identities=17% Similarity=0.062 Sum_probs=112.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
..++++|+|+|+||||+++|+.|++.+.+. |++++++++.+.+..+ +..++.+++.+||++|||+ |.+|..++.|
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~--g~~v~~~~~~~~~~~~--~~~~l~~~d~iiigsP~y~-~~~~~~~k~~ 329 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSE--GVDVRVYCLHEDDRSE--IVKDILESGAIALGAPTIY-DEPYPSVGDL 329 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTT--TCEEEEEETTTSCHHH--HHHHHHTCSEEEEECCEET-TEECTHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECcccc-ccchHHHHHH
Confidence 568999999999999999999999999876 8899999999887654 5566889999999999995 6666679999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (669)
++++...... . ++||++++||+|+.. +.+.+.+.+.|+.+|++.+.+ ...+... ...+...+|.+.+...
T Consensus 330 ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 330 LMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 9998753211 1 589999999976543 667889999999999999876 3332211 2334555666665443
No 61
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.47 E-value=4.8e-13 Score=131.15 Aligned_cols=128 Identities=15% Similarity=0.024 Sum_probs=102.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccch-------------hHHhhhccCCeEEEEEecC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-------------QYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~-------------~~~~~l~~~~~vi~~~sTy 149 (669)
|++++|+|+|.+|||+.+|+.|++.+.+. |++++++++.+...... ....++.+++.|||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQG--GFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhC--CCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 57999999999999999999999999987 88999999987421110 0145588999999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
.|.+|..++.|++++..... ...++++++++|+.+...++.++.+...+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLWL-TGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHHH-HTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHhh-ccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 68899999999998754200 0127899999999987776666778899999999999998764
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.46 E-value=3.4e-14 Score=155.26 Aligned_cols=145 Identities=12% Similarity=-0.016 Sum_probs=112.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~ 162 (669)
+++++|+|+|+||||+++|+.|++.+.+. |++++++++.+.+... +..++.+++.+||++||| .|.+|..++.|+
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~--~~~~l~~~D~iiigsP~y-~~~~~~~~k~fl 330 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARST--GCETVLLEMTSSDITK--VALHTYDSGAVAFASPTL-NNTMMPSVAAAL 330 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEEGGGCCHHH--HHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhC--CCeEEEEEcCcCCHHH--HHHHHHhCCEEEEEcCcc-CcCchHHHHHHH
Confidence 68999999999999999999999999877 8889999998876543 445688999999999999 555666699999
Q ss_pred HHHhcCCCCCCCC-CCceEEEEEecCcchHHHHHHHHHHHHHHHH-cCCeEEecc-eeecCCC--CcHHHHHHHHHHHHH
Q 005924 163 KWFTEGNDRGPWL-QQLKFGVFGLGNRQYEHFNKIGIVLDEELCK-QGGARLVPL-GLGDDDQ--CIEDDFTAWRELVWP 237 (669)
Q Consensus 163 ~~L~~~~~~~~~l-~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~i~~~-g~gD~~~--~~e~~f~~W~~~l~~ 237 (669)
+++.... + ++|++++||+|.. .+.+.+.+.+.|+. +|++.+.+. ..+.... ...+...+|.+.+..
T Consensus 331 d~l~~~~-----~~~~K~~~~~~t~g~----~~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 401 (414)
T 2q9u_A 331 NYVRGLT-----LIKGKPAFAFGAFGW----SNRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGK 401 (414)
T ss_dssp HHHHHHT-----TTTTSBEEEEEEESS----SCCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc-----ccCCCEEEEEEecCC----CchhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 9987532 6 7999999997654 35678899999999 999988653 2222211 233555667666666
Q ss_pred HHHh
Q 005924 238 ELDQ 241 (669)
Q Consensus 238 ~L~~ 241 (669)
.+.+
T Consensus 402 ~~~~ 405 (414)
T 2q9u_A 402 RAIA 405 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 63
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.40 E-value=2.2e-12 Score=126.25 Aligned_cols=127 Identities=18% Similarity=0.058 Sum_probs=99.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeeEEecCCCCCccch-----------hH--HhhhccCCeEEEEEec
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE-----------QY--EEKLKKETLAFFMVAT 148 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~~~v~dl~~~~~~~~-----------~~--~~~l~~~~~vi~~~sT 148 (669)
|++|+|+|+|.+|||+.+|+.|++.+.+ . |++++++++.+...... .. ..++.+++.|||++||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 78 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVD--GAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPT 78 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTST--TCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcC--CCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeCh
Confidence 5789999999999999999999999987 6 88999999987521110 00 3458899999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 149 yG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
| .|.+|..++.|++++..... ...+++|++++|+.+... +....+.+.+...|..+|++.+.+
T Consensus 79 y-~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 79 R-FGNMSGQMRTFLDQTGGLWA-SGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp E-TTEECHHHHHHHTTCHHHHH-HTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCC
T ss_pred h-cCCchHHHHHHHHHhhhhhh-hcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECC
Confidence 9 99999999999998753100 012789999999987655 445567788888899999988753
No 64
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.36 E-value=7.4e-13 Score=123.49 Aligned_cols=98 Identities=20% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCC----CCCCChhH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYG----DGEPTDNA 158 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG----~G~~p~~a 158 (669)
+|..+|+|+|.||||++|+++|.. +. .++ ++. +.++ +..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~------~~--~~I-~~~--~~~~------~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGL------PA--VRI-PLN--ERER------IQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCS------CC--EEC-CSS--TTCC------CCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCC------cc--ccc-ccc--cCcc------cccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 345689999999999999999842 11 222 332 1222 456678999999999 59999999
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcch-HHHHHHHHHHHHHHH
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELC 205 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~ 205 (669)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+++.
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 999876543 357899999999998 999999999999885
No 65
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.36 E-value=6e-12 Score=124.70 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=103.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCC--------------------Cc-cchhHHhhhccCC
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--------------------AM-DDEQYEEKLKKET 140 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~--------------------~~-~~~~~~~~l~~~~ 140 (669)
.|++|+|+|+|.+|||+.+|+.|++.+.+. |.+++++|+.+. +. .. ...++.+++
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD 80 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAA--GAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEA--TPADLEWAE 80 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBC--CHHHHHHCS
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcC--CCEEEEEeccccccchhhhcccccccccccccchhHH--HHHHHHHCC
Confidence 478999999999999999999999999987 889999999875 32 22 356688999
Q ss_pred eEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 141 LAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 141 ~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
.|||++|+| .|.+|..++.|++++...-. ...+++|++++|+.+...++....+...+...|..+|++.+..
T Consensus 81 ~ii~gsP~y-~~~~~~~lk~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 81 AIVFSSPTR-FGGATSQMRAFIDTLGGLWS-SGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEEE-TTEECHHHHHHHHTTHHHHH-TTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEEcCcc-ccCccHHHHHHHHHhccccc-cccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 999999999 69999999999998753100 0128899999999876665444677888999999999988764
No 66
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.36 E-value=6.4e-12 Score=123.20 Aligned_cols=127 Identities=12% Similarity=0.018 Sum_probs=100.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc---------------chhHHhhhccCCeEEEEE
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------DEQYEEKLKKETLAFFMV 146 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~---------------~~~~~~~l~~~~~vi~~~ 146 (669)
.|++|+|+|+| +|||+.+|+.+++.+.+. |++++++++.+. .. .....+++.+++.|||++
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gs 78 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEA--GAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGS 78 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHH--SCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEE
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhC--CCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEEC
Confidence 36799999999 999999999999999987 889999999875 10 000145688999999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 147 sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
|+| .|.+|..++.|++++...-. ...++++++++|+.+...++....+.+.+.+.|..+|++.+..
T Consensus 79 P~y-~~~~~~~lk~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 79 PTR-YGNMAGGLKTFLDTTAILWK-DNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp ECB-TTBCCHHHHHHHHTTHHHHH-TTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred Ccc-ccCccHHHHHHHHHhhhccc-ccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 999 69999999999998742100 0128899999999876665434667788999999999988754
No 67
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.30 E-value=1.5e-11 Score=120.45 Aligned_cols=123 Identities=20% Similarity=0.123 Sum_probs=95.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.+++|+|+|+|.||||+++|+.|++.+.+. .+++.+++.-.+....++.+++.|||++||| .|.+|..++.|
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~f 76 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLSEDGWAALDAADAIIFGTPTY-MGGPSWQFKKF 76 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCCHHHHHHHHHCSEEEEEEEEE-TTEECHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCCHhHHHHHHHCCEEEEEeCcc-CCCccHHHHHH
Confidence 467899999999999999999999999743 3344443111111345688999999999999 69999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
++++...-. ...+++|++++|+.+.+.++.+..+...+...|..+|+..+.
T Consensus 77 ld~~~~~~~-~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg 127 (193)
T 3d7n_A 77 ADASSKPWF-SAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVS 127 (193)
T ss_dssp HHHTHHHHH-TTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHhhhhcc-ccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 999862000 012889999999998887776778889999999999988654
No 68
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.27 E-value=1.6e-11 Score=117.07 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=90.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----------------------hhHHhhhccC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------------------EQYEEKLKKE 139 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----------------------~~~~~~l~~~ 139 (669)
+++++|+|.|+||||+++|+.|++.+... .+++.+...|+..+ .....++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~----~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGAD----LYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCC----eEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 46899999999999999999999988422 12222222221100 0012237789
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEecceee
Q 005924 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (669)
Q Consensus 140 ~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (669)
+.|||++||| .|.+|..+..|++.+ . ++|+++++|+. |++.+ ..+.+.+.+.|. |++.+ +-...
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~~~ 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY---D-----FAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGKLL 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS---C-----CTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCEEC
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc---C-----CCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cceEE
Confidence 9999999999 689998888887764 2 88999999996 44444 356677777775 66654 22222
Q ss_pred cCCCCcHHHHHHHHHHH
Q 005924 219 DDDQCIEDDFTAWRELV 235 (669)
Q Consensus 219 D~~~~~e~~f~~W~~~l 235 (669)
. ....++++.+|.+.+
T Consensus 145 ~-g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 N-GQITRDLVTEWFEKI 160 (162)
T ss_dssp C-SCCCHHHHHHHHHHT
T ss_pred e-CCCCHHHHHHHHHHh
Confidence 2 234689999999764
No 69
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.25 E-value=6.6e-11 Score=116.20 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=98.7
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHH-HHhhhCCCeeEEecCCCCCc-----------cchhHHhhhccCCeEEEEEec
Q 005924 83 KTKVTVFYGTQ--TGTAEGFAKALAEE-IKARYEKAAVKVVDLDDYAM-----------DDEQYEEKLKKETLAFFMVAT 148 (669)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~-l~~~~~g~~~~v~dl~~~~~-----------~~~~~~~~l~~~~~vi~~~sT 148 (669)
|++|+|+|||. +|+|+.+|+.+++. +.+. |.+++++|+.+++. +-..+..++.+++.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~--g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARS--DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS--SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHC--CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57899999997 79999999999999 9877 78899999987743 112244567899999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 149 yG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
| .|.+|..++.|++++.... ++||++++|+.|... .+++.....+...|..+|++.+.+
T Consensus 80 y-~~~~p~~lK~~ld~l~~~~-----~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~~ 138 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQFA-----LAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVVQ 138 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCTTT-----TTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEECC
T ss_pred c-CCCCCHHHHHHHHhccccc-----cCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEeccc
Confidence 9 7889999999999986432 889999999997654 333333246888999999998754
No 70
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.25 E-value=3.8e-11 Score=115.50 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=91.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccch-----------------------hHHhhhcc
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-----------------------QYEEKLKK 138 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~-----------------------~~~~~l~~ 138 (669)
++++++|+|.|.||||+++|+.|++.+... -+++.+...|...+. ....++.+
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~ 87 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGT 87 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGG
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhH
Confidence 578899999999999999999999998421 122223323221000 00134778
Q ss_pred CCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceee
Q 005924 139 ETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (669)
Q Consensus 139 ~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (669)
++.|||++||| .|.+|..+..|++.+ . ++|+++++|+.+... .++.+.+.+.+.|. |++.. +-...
T Consensus 88 yD~iilg~Pvy-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~~~-~g~~~ 153 (171)
T 4ici_A 88 YDVVFIGYPIW-WDLAPRIINTFIEGH---S-----LKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLNWK-EGRLL 153 (171)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHS---C-----CTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSEEC-CCEEC
T ss_pred CCEEEEecccc-cCCchHHHHHHHHHc---C-----CCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCeec-cCeEe
Confidence 99999999999 588888888888776 2 789999999964222 13566777877775 55543 32233
Q ss_pred cCCCCcHHHHHHHHHHH
Q 005924 219 DDDQCIEDDFTAWRELV 235 (669)
Q Consensus 219 D~~~~~e~~f~~W~~~l 235 (669)
.. ..++++..|.+.+
T Consensus 154 ~~--~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 154 NR--TDEKAIRAWLDVI 168 (171)
T ss_dssp SS--CCHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHh
Confidence 32 3678899999765
No 71
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.16 E-value=1.6e-10 Score=108.62 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=85.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCC-CeeEEecCC-CCCccc--------------------hhHHhhhccCC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEK-AAVKVVDLD-DYAMDD--------------------EQYEEKLKKET 140 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g-~~~~v~dl~-~~~~~~--------------------~~~~~~l~~~~ 140 (669)
+++++|+|.|+||||+++|+.|++++... + +++++ .+ .|+.+. .....++.+++
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~--~~~~i~~--~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d 78 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDS--ELKEVKV--SEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYD 78 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTC--EEEECBC--CTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCS
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCC--CEEEEEc--CCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCC
Confidence 35899999999999999999999988522 1 12221 11 122100 00122377899
Q ss_pred eEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecC
Q 005924 141 LAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (669)
Q Consensus 141 ~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~ 220 (669)
.|||++||| .|.+|..+..|++.+.. +.++.+++|+.|.+.+ ..+.+.+.+.+. +++.+. |..-
T Consensus 79 ~iilG~P~~-~g~~~~~~~~fl~~~~~-------~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~~--g~~~- 142 (151)
T 3edo_A 79 LILIGSPVW-SGYPATPIKTLLDQMKN-------YRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVIG--VARD- 142 (151)
T ss_dssp EEEEEEEEE-TTEECTHHHHHHHHTTT-------CCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEEE--EEET-
T ss_pred EEEEEccee-cccccHHHHHHHHhchh-------cCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeeec--cccc-
Confidence 999999999 69999999999998742 6789999999776654 455677777774 454442 2221
Q ss_pred CCCcHHHHHHHH
Q 005924 221 DQCIEDDFTAWR 232 (669)
Q Consensus 221 ~~~~e~~f~~W~ 232 (669)
+.++.+|.
T Consensus 143 ----~~~~~~w~ 150 (151)
T 3edo_A 143 ----DSEVDKWS 150 (151)
T ss_dssp ----TTTHHHHH
T ss_pred ----HHHHHHHh
Confidence 24688886
No 72
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.14 E-value=7.3e-10 Score=108.31 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=116.5
Q ss_pred CCeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc---------------------------chhH
Q 005924 83 KTKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (669)
Q Consensus 83 ~~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~---------------------------~~~~ 132 (669)
|++|+|+|+|.+ |+|+.+|+.+++.+.++.++.+++++|+.+.+.. -..+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 579999999998 9999999999999988722388999999875421 0124
Q ss_pred HhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCceEEEEEecCcchHH--HHHHHHHHHH
Q 005924 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEH--FNKIGIVLDE 202 (669)
Q Consensus 133 ~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~--------~~~~l~~~~~avFGlGds~Y~~--f~~~~k~ld~ 202 (669)
.+++.+++.|||++|+| .+.+|...+.|++++..... ....+++|++++|+.+...|++ |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 56788999999999999 88899999999999863110 0023889999999987666643 5557777888
Q ss_pred HHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 203 ~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
.|..+|++.+..+....-.. .++..++|.+...+.+.++
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~ 198 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDSV 198 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHHH
Confidence 89999998775543322222 3455578887776666543
No 73
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.98 E-value=3e-09 Score=103.82 Aligned_cols=125 Identities=10% Similarity=0.146 Sum_probs=97.9
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc------------chhHHhhhccCCeEEEEEe
Q 005924 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD------------DEQYEEKLKKETLAFFMVA 147 (669)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~------------~~~~~~~l~~~~~vi~~~s 147 (669)
.+|+|+|+|||.+ |+|+.+|+.+++.+. . |.+++++|+.++..- -..+.+++.+++.|||++|
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~--g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP 81 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-P--GMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATP 81 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-T--TCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECC
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-C--CCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcc
Confidence 3468999999985 999999999999987 5 788999998874321 1234566889999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
+| .|.+|...+.|++++..... ..++||++++|+.+...++ ...+...+...|..+|++.+.
T Consensus 82 ~y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 82 EY-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp EE-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred cc-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 99 77899999999999975310 2388999999998644443 234668888889999998876
No 74
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.97 E-value=9.3e-09 Score=104.09 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=113.2
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---------------------cc-hhHHhhhcc
Q 005924 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DD-EQYEEKLKK 138 (669)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~---------------------~~-~~~~~~l~~ 138 (669)
|++|+|+|||.. |+|+.+|+.+++.+.+.. |.+++++|+.+.+. ++ ..+.+++.+
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~-g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 79 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN-NVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE 79 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS-CCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHH
Confidence 578999999996 999999999999997653 57789999876532 11 235566889
Q ss_pred CCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceee
Q 005924 139 ETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (669)
Q Consensus 139 ~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (669)
++.|||++|+| .|.+|..++.|++++.... .+..++||++++|+.+... ....+.+.+...|..+|++.+......
T Consensus 80 AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~ 155 (242)
T 1sqs_A 80 SDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSIT 155 (242)
T ss_dssp CSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEe
Confidence 99999999999 8999999999999985321 1124899999999875322 123466788888999999988765443
Q ss_pred cC-CCCcHHHHHHHHHHHHHHHHh
Q 005924 219 DD-DQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 219 D~-~~~~e~~f~~W~~~l~~~L~~ 241 (669)
+. .....+.+.++.+.+...+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 156 NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHHHHHHHHHHHHHHHHhc
Confidence 32 223456666777776666543
No 75
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.96 E-value=4.5e-09 Score=102.23 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=96.5
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhh----CCCeeEEecCCCCCc----------------------c-chhHHh
Q 005924 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARY----EKAAVKVVDLDDYAM----------------------D-DEQYEE 134 (669)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~----~g~~~~v~dl~~~~~----------------------~-~~~~~~ 134 (669)
|+|+|+|||.+ |+|+.+|+.+++.+.+.. +|.+++++|+.+.+. + -..+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 58999999998 999999999999998642 257888888764221 0 023556
Q ss_pred hhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 135 KLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 135 ~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
++.+++.+||++|+| .|.+|...+.|++++... ++||++++|+.|... . ..+...+...|..+|++.+..
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~~------l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYHE------WHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCSTT------TTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHhh------cCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcce
Confidence 788999999999999 788899999999998642 889999999988743 2 346678888999999988764
Q ss_pred c
Q 005924 215 L 215 (669)
Q Consensus 215 ~ 215 (669)
+
T Consensus 151 ~ 151 (191)
T 1t0i_A 151 V 151 (191)
T ss_dssp E
T ss_pred e
Confidence 3
No 76
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.91 E-value=1.7e-09 Score=103.78 Aligned_cols=144 Identities=10% Similarity=0.145 Sum_probs=99.8
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc-------------chhHHhhhccCCeEEEEEec
Q 005924 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-------------DEQYEEKLKKETLAFFMVAT 148 (669)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~-------------~~~~~~~l~~~~~vi~~~sT 148 (669)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++++.+++.. -..+.+++.+++.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 47999999999 9999999999998753 34555444321 12244568899999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchHHHHHHHHHHHHHHHHcCCeEEecceee-----c-CC
Q 005924 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG-----D-DD 221 (669)
Q Consensus 149 yG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g-----D-~~ 221 (669)
| +|.+|..++.|++|+.... ++||.+++|+. |... .+..+...+...|..+|++.+.+.... | ++
T Consensus 74 y-~~~~p~~lk~~lD~l~~~~-----~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~~~v~i~~~~f~~~~ 145 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSEQ-----FKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIPKQLVLKPVHIDVEN 145 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHHH-----HTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEEEEEEECGGGEETTT
T ss_pred c-CCCCCHHHHHHHHHhCHhh-----hCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEecceEEechhhcCCCC
Confidence 9 9999999999999986532 88999999994 3221 234667889999999999877532222 2 12
Q ss_pred CCcHHHHHHHHHHHHHHHHhh
Q 005924 222 QCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 222 ~~~e~~f~~W~~~l~~~L~~~ 242 (669)
....+...+-.+.+...|...
T Consensus 146 ~~~~~~~~~~l~~~~~~l~~~ 166 (174)
T 3gfs_A 146 ATVAENIKESIKELVEELSMF 166 (174)
T ss_dssp TEECHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHH
Confidence 222344455555555555543
No 77
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.89 E-value=2.8e-08 Score=101.02 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=100.2
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc---------chhHHhhhccCCeEEEEEecCC
Q 005924 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------DEQYEEKLKKETLAFFMVATYG 150 (669)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~---------~~~~~~~l~~~~~vi~~~sTyG 150 (669)
.+++|+|+|||.. |+|+.+|+.+++.+.+. |++++++|+.+++.. -..+.+.+.+.+.+||++|+|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~--g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y- 109 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFF--GAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER- 109 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHT--TCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhC--CCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-
Confidence 4689999999986 99999999999999877 899999999887521 123567788999999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 151 ~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
+|.+|...+.|++|+.........++||++++++.+-.. +. ..+...+...|..+|+..+.
T Consensus 110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCEEeC
Confidence 999999999999999643111124899999999984322 11 13567888889999998763
No 78
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.81 E-value=8.5e-08 Score=94.39 Aligned_cols=157 Identities=8% Similarity=0.041 Sum_probs=110.8
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEecCC--CCCccc---------------------------
Q 005924 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLD--DYAMDD--------------------------- 129 (669)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~--~~~~~~--------------------------- 129 (669)
|++|+|+|||.. |+|+.+|+.+.+.+.+..++.+++++|+. +.+...
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999997 99999999999999987223889999998 654211
Q ss_pred -----hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCceEEEEEecCcchHHHHHH
Q 005924 130 -----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEHFNKI 196 (669)
Q Consensus 130 -----~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~--------~~~~l~~~~~avFGlGds~Y~~f~~~ 196 (669)
..+.+++.+.+.|||++|+| .+.+|...+.|++++..... ....++||++++|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 12445678899999999999 99999999999999864210 01237899999997644455431334
Q ss_pred HHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHh
Q 005924 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (669)
...+...|.-+|++.+..+....-.. .++..++|.+.....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 56677778889998876544332222 335667777665555443
No 79
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.79 E-value=6.9e-08 Score=99.59 Aligned_cols=126 Identities=10% Similarity=0.014 Sum_probs=99.7
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc----------hhHHhhhccCCeEEEEEecC
Q 005924 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD----------EQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~----------~~~~~~l~~~~~vi~~~sTy 149 (669)
.+++|+|+|||.. |+|+.+|+.+++.+.+. |++++++|+.+.+..+ ..+.+.+...+.+||++|+|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~--G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y 134 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFF--GAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER 134 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHT--TCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhC--CCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc
Confidence 5789999999986 99999999999999876 8999999998765211 22556788899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
+|.+|...+.|++|+.........++||.+++++.+-.. +.. .+...+...|..+|+..+
T Consensus 135 -n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 135 -HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp -TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred -ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 999999999999999643111124899999999985332 222 345678888888999876
No 80
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.69 E-value=2.1e-07 Score=90.90 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=108.8
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----------hhHHhhhccCCeEEEEEecC
Q 005924 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTy 149 (669)
|+||+|++||. .|+|+.+|+.+.+.+. . +.+++++|+.++..-+ ..+.+++.+.+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~--~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-D--RAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-T--SSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-C--CCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999996 4 7889999987654211 23567788999999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCC-----CCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeec-----
Q 005924 150 GDGEPTDNAARFYKWFTEGND-----RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD----- 219 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~-----~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD----- 219 (669)
++.+|...+.|++++..... ....++||++++++.+... .+..+...+...|..+|++.+.......
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~~v~~~~~~~~ 155 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQLTGVPINSEA 155 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEECCCTTH
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecceeecccchhh
Confidence 99999999999999975210 0124999999999986552 1233457788889999999876543332
Q ss_pred --CCC-CcHHHHHHHHHHHHHHHHh
Q 005924 220 --DDQ-CIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 220 --~~~-~~e~~f~~W~~~l~~~L~~ 241 (669)
++. ..++...+..+.+...|..
T Consensus 156 f~~g~~~~~~~~~~~l~~~~~~l~~ 180 (192)
T 3fvw_A 156 WSTGILKVSAEKLAELSAQADALLS 180 (192)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHHHHHHH
Confidence 122 1244555555555555444
No 81
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.66 E-value=2.3e-07 Score=89.12 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc------------------cchhHHhhhccCCe
Q 005924 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM------------------DDEQYEEKLKKETL 141 (669)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~------------------~~~~~~~~l~~~~~ 141 (669)
+||+|+|+|+|.. |||+.+|+.+++.+ +++++++.+.+. +-..+.+++.+++.
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCE
Confidence 3568999999965 99999999998755 255555554422 11235567889999
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCCCCC------CCCCCceEEEEEecCcchH-HHHHHHHHHHHHHHHcCCeEEec
Q 005924 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRG------PWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 142 vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~------~~l~~~~~avFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
|||++|+| .|.+|..++.|++++....... ..+++|++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus 75 ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999 8899999999999875311000 1278999999998654321 12346678888899999988754
Q ss_pred c
Q 005924 215 L 215 (669)
Q Consensus 215 ~ 215 (669)
+
T Consensus 154 ~ 154 (184)
T 1rli_A 154 V 154 (184)
T ss_dssp E
T ss_pred E
Confidence 3
No 82
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.65 E-value=5.7e-07 Score=88.97 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=112.6
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc----------------------------chh
Q 005924 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------------------DEQ 131 (669)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~----------------------------~~~ 131 (669)
|++|+|++||..+ +|..+|+.+.+.+.++++|.+++++|+.+.+.. -..
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6799999999876 599999999999987766788999998654311 113
Q ss_pred HHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC-------CC-----CCCCCCceEEEEEecC--cchH-----H
Q 005924 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN-------DR-----GPWLQQLKFGVFGLGN--RQYE-----H 192 (669)
Q Consensus 132 ~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~-------~~-----~~~l~~~~~avFGlGd--s~Y~-----~ 192 (669)
+.+++.+.+.|||++|+| .+.+|...+.|++++.... .. ...|+||++.++.... ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 456688899999999999 9999999999999984311 11 1248999998887733 2332 1
Q ss_pred HHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 193 FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 193 f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
+......+...|.-+|++.+..+... .....+++.++|.+.....+.++
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~-g~~~~~~~~~~~l~~a~~~~~~l 208 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAE-GEESGGRSFEDSCDEAEQRLLAL 208 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEEC-CTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEe-cccCCHHHHHHHHHHHHHHHHHH
Confidence 23344667777888999887544332 22235677788887776666543
No 83
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.56 E-value=5.6e-07 Score=87.88 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=96.3
Q ss_pred cCCCeEEEEEECCC--chHHHHHHHHHH----HHHhhhCCCeeEEecCCCCCc------------c-chhHHhhhccCCe
Q 005924 81 AGKTKVTVFYGTQT--GTAEGFAKALAE----EIKARYEKAAVKVVDLDDYAM------------D-DEQYEEKLKKETL 141 (669)
Q Consensus 81 ~~~~~v~I~YgSqt--Gtte~~A~~la~----~l~~~~~g~~~~v~dl~~~~~------------~-~~~~~~~l~~~~~ 141 (669)
..|.+|+++.||.. |+|..+|+.+.+ .+.++.++++++++|+.+++. + -..+.+++.+.+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 35789999999975 789999999999 555442367888888865542 1 1236667889999
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 142 vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
+||++|+| +|.+|..++.|++|+... .++||++++++.|... .+.......+...|..+|+..+.+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~~-----~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv~~ 154 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDTD-----ALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVVPT 154 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCTT-----TTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEECSC
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhhh-----hcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEcCc
Confidence 99999999 999999999999999653 2899999999987432 333222234777888999987744
No 84
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.54 E-value=8.8e-07 Score=87.03 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=110.0
Q ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHhhhCCCeeE-EecCCCCCcc------------chhHHhhhccCCeEEEEEe
Q 005924 83 KTKVTVFYGT--QTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMD------------DEQYEEKLKKETLAFFMVA 147 (669)
Q Consensus 83 ~~~v~I~YgS--qtGtte~~A~~la~~l~~~~~g~~~~-v~dl~~~~~~------------~~~~~~~l~~~~~vi~~~s 147 (669)
.+||++++|| ..++|+.+|+.+++.+. . |++++ ++|+.+...- -..+.+.+.+.+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP-E--GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC-T--TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc-C--CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 3689999999 66999999999998885 4 67888 8888654321 1235566889999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe-c-ceee------c
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV-P-LGLG------D 219 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~-~-~g~g------D 219 (669)
+| ++..|.-.+.|++|+.... ...++||++++++.+-..++.. .+...+...|..+|++.+. + +..+ |
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~~--~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~~~v~i~~~~~~fd 158 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVD 158 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTSS--SCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCSSCEEECSGGGTBC
T ss_pred cc-CCCcCHHHHHHHHHhcccC--CcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCCCeEEeechhhhcC
Confidence 99 9999999999999997621 2348999999999865444322 2456788888899998874 2 2222 2
Q ss_pred C--CCCcHHHHHHHHHHHHHHHHhh
Q 005924 220 D--DQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 220 ~--~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
+ +.-.+++..+-.+.+...|...
T Consensus 159 ~~~g~l~d~~~~~~l~~~~~~l~~~ 183 (199)
T 4hs4_A 159 AQTLELSDVATREFLARQLDALAAL 183 (199)
T ss_dssp SSSCCBCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 2 2222455666666666666553
No 85
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.50 E-value=2.6e-06 Score=84.70 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=113.6
Q ss_pred CCCeEEEEEECCC------chHHHHHHHHHHHHHhhhCCCeeEEecCCC-CCccchhHHhhhccCCeEEEEEecCCCCCC
Q 005924 82 GKTKVTVFYGTQT------GTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (669)
Q Consensus 82 ~~~~v~I~YgSqt------Gtte~~A~~la~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 154 (669)
.|++|+|++||.. +.+..+|+.+.+.+.+. |.+++++|+++ +|.. ...+.+...+.|||++|.| .+.+
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~--g~ev~~~dL~~~~Dv~--~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRES--GHQVKITTVDQGYDIE--SEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHT--TCCEEEEEGGGCCCHH--HHHHHHHHCSEEEEEEECB-TTBC
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhC--CCEEEEEECCCccCHH--HHHHHHHhCCEEEEECChH-hccC
Confidence 5789999999973 67899999999999887 88999999974 3333 3567788999999999999 9999
Q ss_pred ChhHHHHHHHHhcC--C-----------------CCCCCCCCceEEEEEecCcchHHH-------HH-----HHHHHHHH
Q 005924 155 TDNAARFYKWFTEG--N-----------------DRGPWLQQLKFGVFGLGNRQYEHF-------NK-----IGIVLDEE 203 (669)
Q Consensus 155 p~~a~~F~~~L~~~--~-----------------~~~~~l~~~~~avFGlGds~Y~~f-------~~-----~~k~ld~~ 203 (669)
|...+.|++.+... . ..+..|+||++.++-..+...+.| +. ...-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 99999999987321 1 112358999988887654442223 22 11224666
Q ss_pred HHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhhh
Q 005924 204 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 243 (669)
Q Consensus 204 L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 243 (669)
|.-+|.+.+-+....+-.. ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778999886665554432 4578888888877777654
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.47 E-value=1.3e-06 Score=85.49 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=112.8
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc-------------------cchhHHhhhccCCeE
Q 005924 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DDEQYEEKLKKETLA 142 (669)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~-------------------~~~~~~~~l~~~~~v 142 (669)
|||+|++||.. +++..+|+.+.+.+ +. |.+++++|+.+.+. +-..+.+++.+.+.|
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SK--EHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CT--TSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cC--CCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 58999999964 47899999999999 55 78899999875532 113456678889999
Q ss_pred EEEEecCCCCCCChhHHHHHHHHhcCC------C--CCCCCCCceEEEEEecCcc--hHHH--HHHHHHHHHHHHHcCCe
Q 005924 143 FFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQ--YEHF--NKIGIVLDEELCKQGGA 210 (669)
Q Consensus 143 i~~~sTyG~G~~p~~a~~F~~~L~~~~------~--~~~~l~~~~~avFGlGds~--Y~~f--~~~~k~ld~~L~~lGa~ 210 (669)
||++|.| .+.+|...+.|++++.... . ....|+||++.++..+... |..+ ......+...|.-+|++
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 9999999999999984321 0 0124899999999886655 4211 11124455556668998
Q ss_pred EEecceeecCCCCcHHHHHHHHHHHHHHHHhhh
Q 005924 211 RLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 243 (669)
Q Consensus 211 ~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 243 (669)
.+.......-....++...+|.+++.....+++
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776665554444567889999998877776644
No 87
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.42 E-value=3.7e-06 Score=86.60 Aligned_cols=159 Identities=14% Similarity=-0.008 Sum_probs=109.2
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---------------------------------
Q 005924 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------------------- 127 (669)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~--------------------------------- 127 (669)
||+|+|+|+|.. |+|..+|+.+.+.+.+. |.+++++|+.+.+.
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~--g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKK--GWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT--TCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhC--CCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 68999999999999876 88899999876542
Q ss_pred --cc-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCceEEEEEecCcc---hHH-
Q 005924 128 --DD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ---YEH- 192 (669)
Q Consensus 128 --~~-~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~--------~~~~l~~~~~avFGlGds~---Y~~- 192 (669)
++ ....+.+...+.|||++|.| .+.+|...+.|++++..... ....++||++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 12334478899999999999 89999999999999854210 0134899999998874433 421
Q ss_pred -HH----HHHHHHH-HHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhhhC
Q 005924 193 -FN----KIGIVLD-EELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLR 244 (669)
Q Consensus 193 -f~----~~~k~ld-~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 244 (669)
.+ .....+. ..|.-+|++.+.+..........++..++|.+.....+.++..
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~ 216 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWD 216 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 1222222 2445679887755444333223456777788777777776543
No 88
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.76 E-value=3.5e-08 Score=97.08 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=94.8
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEe-cCCCCC---cc---------chhHHhhhccCCeEEEEEe
Q 005924 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVV-DLDDYA---MD---------DEQYEEKLKKETLAFFMVA 147 (669)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~-dl~~~~---~~---------~~~~~~~l~~~~~vi~~~s 147 (669)
+|+|+|+|||.. |+|+.+|+.+++.+.+ |++++++ |+.++. .+ -..+.+.+.+.+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~---g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 468999999987 8999999999998873 5778888 887621 11 1124556788999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 148 TyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
+| +|.+|...+.|++|+..... ..++||++++|+.+...++ ...+...+...|..+|+..+..
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~~--~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~~ 145 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVSP--QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLNR 145 (199)
Confidence 99 88899999999999965310 1389999999996433333 2345677888888899987744
No 89
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.37 E-value=5.1e-06 Score=83.29 Aligned_cols=159 Identities=15% Similarity=0.067 Sum_probs=111.7
Q ss_pred CCeEEEEEECCCch--HHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---------------------------------
Q 005924 83 KTKVTVFYGTQTGT--AEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------------------- 127 (669)
Q Consensus 83 ~~~v~I~YgSqtGt--te~~A~~la~~l~~~~~g~~~~v~dl~~~~~--------------------------------- 127 (669)
.|||+|++||...+ +..+|+.+.+.+.+. |.+++++|+.+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~--g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 78 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQ--GCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS 78 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHH--TCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCC
Confidence 36899999997654 999999999999988 89999999876431
Q ss_pred --cc-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCceEEEEEecCcc---hHH-
Q 005924 128 --DD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ---YEH- 192 (669)
Q Consensus 128 --~~-~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~--------~~~~l~~~~~avFGlGds~---Y~~- 192 (669)
++ ....+.+...+.|||++|.| .+.+|.-.+.|++++..... ....|+||++.++...... |..
T Consensus 79 ~~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~ 157 (228)
T 3tem_A 79 LASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKT 157 (228)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhc
Confidence 01 11334477889999999999 99999999999999853210 0135899999998764433 421
Q ss_pred -HHHHHHHHHH-----HHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhhhC
Q 005924 193 -FNKIGIVLDE-----ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLR 244 (669)
Q Consensus 193 -f~~~~k~ld~-----~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 244 (669)
++...+.+-. .+.-+|++.+.+....+-....+++..+|.++....|..+..
T Consensus 158 g~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 158 GVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp STTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred cccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1211222211 223468887766655555445678889999998888887654
No 90
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.36 E-value=2.7e-06 Score=83.08 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=107.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCC----ccchhHHhhhccCCeEEEEEecCCCCCCChhH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA----MDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~----~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a 158 (669)
|+||+|++||..++...+++.+.+.+++. |.+++++|+.+.. .+-....+.+...+.|||++|.| .+.+|...
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~--g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQH--TDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTC--TTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhC--CCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 57899999999987668999999999876 7778888875322 22233567788999999999999 99999999
Q ss_pred HHHHHHHhcCC----CCCCCCCCceEEEEEecCcc---hH-------HHHHHHHHHHHHHHHcCCeEEecceeecCCC--
Q 005924 159 ARFYKWFTEGN----DRGPWLQQLKFGVFGLGNRQ---YE-------HFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-- 222 (669)
Q Consensus 159 ~~F~~~L~~~~----~~~~~l~~~~~avFGlGds~---Y~-------~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-- 222 (669)
+.|++.+.... ..+..|+||++.++...... |. ......+-+...+.-+|++.+.+....+-..
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999974321 11245999999999875544 32 1122333456677889999876655443321
Q ss_pred ----CcHHHHHHHHHHHHHHHHhh
Q 005924 223 ----CIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 223 ----~~e~~f~~W~~~l~~~L~~~ 242 (669)
..++++++..++....|.++
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Confidence 13455655555555555553
No 91
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.36 E-value=4.5e-06 Score=82.64 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=112.4
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc-----------------------------c
Q 005924 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-----------------------------D 129 (669)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~-----------------------------~ 129 (669)
|++|+|++||-. ++|..+|+.+.+.+.++++|.+++++||.+.+.. -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 689999999965 7899999999999988766788999988654320 0
Q ss_pred hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------C--CCCCCCCceEEEEEecCcchHH-----HHHH
Q 005924 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQYEH-----FNKI 196 (669)
Q Consensus 130 ~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~------~--~~~~l~~~~~avFGlGds~Y~~-----f~~~ 196 (669)
..+.+++...+.+||++|.| .+.+|...+.|++++.... . ....|+||++.++......|.+ +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 22445677889999999999 9999999999999985321 0 1124889999988864444532 2334
Q ss_pred HHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhh
Q 005924 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
...+...|.-+|++.+..+.....+ ...+.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~-~~~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHN-QFPDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTT-TSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEeccc-cCchHHHHHHHHHHHHHHHH
Confidence 4667777888999876544332222 23456778887776666543
No 92
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.35 E-value=1e-05 Score=79.70 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=103.1
Q ss_pred CCCeEEEEEECCC------chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCC
Q 005924 82 GKTKVTVFYGTQT------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT 155 (669)
Q Consensus 82 ~~~~v~I~YgSqt------Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p 155 (669)
+..+|+|+.||-. +++..+|+.+.+.+.+. |.+++++|+.+- .+-..+.+.+.+.+.|||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~--g~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL--GHDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHT--TCEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc--CCEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4568999999988 89999999999999987 889999999752 12234677889999999999999 89999
Q ss_pred hhHHHHHHHHhcC-------------------CCCCCCCCCceEEEEEecCcchHHHH------------HHHHHHHHHH
Q 005924 156 DNAARFYKWFTEG-------------------NDRGPWLQQLKFGVFGLGNRQYEHFN------------KIGIVLDEEL 204 (669)
Q Consensus 156 ~~a~~F~~~L~~~-------------------~~~~~~l~~~~~avFGlGds~Y~~f~------------~~~k~ld~~L 204 (669)
...+.|++.+... ......++||+++++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 9999999964210 00123589999999987554332221 2223356678
Q ss_pred HHcCCeEEecceeecCCC--CcHHHHHHHHH
Q 005924 205 CKQGGARLVPLGLGDDDQ--CIEDDFTAWRE 233 (669)
Q Consensus 205 ~~lGa~~i~~~g~gD~~~--~~e~~f~~W~~ 233 (669)
.-+|++.+......+-.. ..++.++++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRK 197 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHH
Confidence 889999875554433221 34444444443
No 93
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=98.24 E-value=8.7e-06 Score=79.45 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=107.1
Q ss_pred CCCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeE-EecCCCCCccc-------------hhHHhhhccCCeEEEE
Q 005924 82 GKTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMDD-------------EQYEEKLKKETLAFFM 145 (669)
Q Consensus 82 ~~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~-v~dl~~~~~~~-------------~~~~~~l~~~~~vi~~ 145 (669)
.+++|+++.||- .+++..+|+.+.+.+ .. |++++ ++|+.+...-+ ..+.+.+.+.+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 457899999995 588899999886644 34 78888 88887653211 2245678889999999
Q ss_pred EecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec--c------ee
Q 005924 146 VATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP--L------GL 217 (669)
Q Consensus 146 ~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~--~------g~ 217 (669)
+|+| +|.+|...+.|++|+.... ...++||++++++..-..++.. .+...+...|..+|+..+.. . ..
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 9999999999999997621 1348999999999632223222 35577888889999987631 1 11
Q ss_pred ecCC-C-CcHHHHHHHHHHHHHHHHhhh
Q 005924 218 GDDD-Q-CIEDDFTAWRELVWPELDQLL 243 (669)
Q Consensus 218 gD~~-~-~~e~~f~~W~~~l~~~L~~~~ 243 (669)
-|++ . -.+++..+..+.+...+....
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 2332 2 234566667666666666543
No 94
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=98.17 E-value=4.7e-05 Score=76.01 Aligned_cols=160 Identities=10% Similarity=0.037 Sum_probs=113.5
Q ss_pred CCCeEEEEEECC-----CchHHHHHHHHHHHHHhhhCCC-eeEEecCCCCCcc--c------------------------
Q 005924 82 GKTKVTVFYGTQ-----TGTAEGFAKALAEEIKARYEKA-AVKVVDLDDYAMD--D------------------------ 129 (669)
Q Consensus 82 ~~~~v~I~YgSq-----tGtte~~A~~la~~l~~~~~g~-~~~v~dl~~~~~~--~------------------------ 129 (669)
.|++|+|+.||- .++|..+++.+.+.++++.++. +++++||.+.+.. +
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 478999999995 5889999999999998875567 8999998754321 0
Q ss_pred ---hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------CCC--CCC-CCceEEEEEecCcch------H
Q 005924 130 ---EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------DRG--PWL-QQLKFGVFGLGNRQY------E 191 (669)
Q Consensus 130 ---~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~------~~~--~~l-~~~~~avFGlGds~Y------~ 191 (669)
..+.+++...+.+||++|.| .+.+|...+.|++++.... ..+ ..+ +||++.++......| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 12455677889999999999 9999999999999986421 001 235 789999887743334 2
Q ss_pred HHHHHHHHHHHHHHHcCCeEEecceeec-CCCCcHHHHHHHHHHHHHHHHhh
Q 005924 192 HFNKIGIVLDEELCKQGGARLVPLGLGD-DDQCIEDDFTAWRELVWPELDQL 242 (669)
Q Consensus 192 ~f~~~~k~ld~~L~~lGa~~i~~~g~gD-~~~~~e~~f~~W~~~l~~~L~~~ 242 (669)
.+......+...|.-+|++.+..+.... +....++.++++.+.+....++.
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334556677788889998875443322 22246777778877765555544
No 95
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=98.15 E-value=4.7e-05 Score=74.10 Aligned_cols=153 Identities=10% Similarity=0.117 Sum_probs=102.2
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCc---cc--------hhHHhhhccCCeEEEEEecC
Q 005924 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---DD--------EQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~---~~--------~~~~~~l~~~~~vi~~~sTy 149 (669)
+++|.|+.||. ...++++|+.+++.+. . +++++++|+.+... +. ..+.+.+.+.+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~--~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-G--RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-T--TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-C--CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 45799999995 4557889998877664 3 67888888766432 11 12345577899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec--ceee------cCC
Q 005924 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP--LGLG------DDD 221 (669)
Q Consensus 150 G~G~~p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~--~g~g------D~~ 221 (669)
+|..|.-.+.|++|+..... ...+.||.++++|.+-..++.. .+...+...|..+|+..+.. .... |++
T Consensus 79 -n~s~pg~LKn~iDwlsr~~~-~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~p~~~i~~~~~~fd~~ 155 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPYG-QNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSMPEAYIQWHAEAYAAD 155 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCSTT-CCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCCSCCEEECCGGGBCTT
T ss_pred -cccCCHHHHHHHHHhccccc-CCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccCCEEEEeccHhcCCCC
Confidence 99999999999999964211 1349999999998754444322 23455777788899987632 2111 222
Q ss_pred -CCcHHHHHHHHHHHHHHHHh
Q 005924 222 -QCIEDDFTAWRELVWPELDQ 241 (669)
Q Consensus 222 -~~~e~~f~~W~~~l~~~L~~ 241 (669)
.-.++...+..+.+...|.+
T Consensus 156 G~l~de~~~~~l~~~~~~~~~ 176 (190)
T 3u7r_A 156 GSVTDEKTAKFLQGFVDAFVD 176 (190)
T ss_dssp SCBCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 22345555666655555544
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.98 E-value=9.4e-05 Score=71.12 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=103.0
Q ss_pred CeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
||++|++||-. +.+.+++...++.+ .++++.||.+ +.+-....+.+...+.|||++|.| .+.+|...+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~------~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENF------SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTC------TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcC------CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 57999999975 44444444444332 3488889975 333334678889999999999999 9999999999
Q ss_pred HHHHHhcC---CCCCCCCCCceEEEEEecCcchHHH----------HHHHHHHHHHHHHcCCeEEecceeecCCCCcHHH
Q 005924 161 FYKWFTEG---NDRGPWLQQLKFGVFGLGNRQYEHF----------NKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (669)
Q Consensus 161 F~~~L~~~---~~~~~~l~~~~~avFGlGds~Y~~f----------~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~ 227 (669)
|++.+... -..+..|+||++.++.......+.| ....+-+...+.-+|.+.+.+.....-+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 99986421 0012348999999987755442222 2334445556777899988666555444456788
Q ss_pred HHHHHHHHHHHHHh
Q 005924 228 FTAWRELVWPELDQ 241 (669)
Q Consensus 228 f~~W~~~l~~~L~~ 241 (669)
.++|.++....|.+
T Consensus 153 ~~~~l~~~~~~l~~ 166 (177)
T 3ha2_A 153 QQRLLVAYQQYATN 166 (177)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999988777775
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.66 E-value=0.00059 Score=74.28 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=105.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCC----CCCccchhHHhhhccCCeEEEEEecCCCCCCChhH
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD----DYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~----~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a 158 (669)
+++|+|++||-..+...+.+.+++.+.+. ..+++.|+. +++.+-..+.+.+...+.|||++|.| .+..|.-.
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~l 311 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLL 311 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHH
Confidence 47899999999887766888888888753 347777662 22222234677788999999999999 89999999
Q ss_pred HHHHHHHhcCC----CCCCCCCCceEEEEEecCcchHHH--------HHHHHHHHHHHHHcCCeEEecceeecCCCCcHH
Q 005924 159 ARFYKWFTEGN----DRGPWLQQLKFGVFGLGNRQYEHF--------NKIGIVLDEELCKQGGARLVPLGLGDDDQCIED 226 (669)
Q Consensus 159 ~~F~~~L~~~~----~~~~~l~~~~~avFGlGds~Y~~f--------~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~ 226 (669)
+.|++++.... ..+..|+||++.++.......++| ......+...|.-+|++.+.+........-.++
T Consensus 312 K~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d~ 391 (413)
T 3l9w_A 312 KLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDE 391 (413)
T ss_dssp HHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCHH
T ss_pred HHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCHH
Confidence 99999984321 112358999998876633322222 223355666777899998765544333333466
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005924 227 DFTAWRELVWPELDQLL 243 (669)
Q Consensus 227 ~f~~W~~~l~~~L~~~~ 243 (669)
+..++.+.....|..+.
T Consensus 392 ~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 392 TLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777766666666543
No 98
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.63 E-value=0.0013 Score=67.62 Aligned_cols=162 Identities=15% Similarity=0.032 Sum_probs=109.0
Q ss_pred CCCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc-------------------------------
Q 005924 82 GKTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD------------------------------- 128 (669)
Q Consensus 82 ~~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~------------------------------- 128 (669)
..|||+|+|++- .+.+..+++.+.+.+++. |.+|+++||-+.+.+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~--G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQA--GHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGT 98 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT--TCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHC--CCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCC
Confidence 456899999984 467889999999999988 899999998543221
Q ss_pred ---c-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCC----------------CCCCCCCceEEEEEecCc
Q 005924 129 ---D-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND----------------RGPWLQQLKFGVFGLGNR 188 (669)
Q Consensus 129 ---~-~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~----------------~~~~l~~~~~avFGlGds 188 (669)
+ ....+.+...+.|||++|.| .+.+|.-.+.|++.+-.... ....|+||++.++-.-+.
T Consensus 99 ~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~ 177 (280)
T 4gi5_A 99 QSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGG 177 (280)
T ss_dssp SCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSS
T ss_pred CcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCC
Confidence 0 12334577889999999999 88999999999998643110 123478999877655333
Q ss_pred chHH-----HHHHHHHHHHHHH-----HcCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHhhhCCC
Q 005924 189 QYEH-----FNKIGIVLDEELC-----KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDE 246 (669)
Q Consensus 189 ~Y~~-----f~~~~k~ld~~L~-----~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~ 246 (669)
..+. |+.....+-..+. -.|++.+-+....+.+...++++.+|.+.+-+.|..+...+
T Consensus 178 ~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 245 (280)
T 4gi5_A 178 WAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLWQTE 245 (280)
T ss_dssp CGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTTTSC
T ss_pred ChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcC
Confidence 3222 2322222211121 24888776666555444678889999999888888765433
No 99
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=70.89 E-value=4.9 Score=40.41 Aligned_cols=76 Identities=14% Similarity=0.000 Sum_probs=45.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F 161 (669)
.|++++|+=|++ -+..|..|.+.|++. |++|++++..+...+ ..+|.++++||+.- +..+.-.+...+.+
T Consensus 3 ~m~~vLiV~g~~---~~~~a~~l~~aL~~~--g~~V~~i~~~~~~~~----~~~L~~yDvIIl~d-~~~~~l~~~~~~~L 72 (259)
T 3rht_A 3 AMTRVLYCGDTS---LETAAGYLAGLMTSW--QWEFDYIPSHVGLDV----GELLAKQDLVILSD-YPAERMTAQAIDQL 72 (259)
T ss_dssp ---CEEEEESSC---TTTTHHHHHHHHHHT--TCCCEEECTTSCBCS----SHHHHTCSEEEEES-CCGGGBCHHHHHHH
T ss_pred CCceEEEECCCC---chhHHHHHHHHHHhC--CceEEEecccccccC----hhHHhcCCEEEEcC-CccccCCHHHHHHH
Confidence 366788882222 244566777778777 888999887776321 12388999999973 22122233455666
Q ss_pred HHHHhc
Q 005924 162 YKWFTE 167 (669)
Q Consensus 162 ~~~L~~ 167 (669)
.+|.++
T Consensus 73 ~~yV~~ 78 (259)
T 3rht_A 73 VTMVKA 78 (259)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 677754
No 100
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=68.17 E-value=11 Score=32.52 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCee--EEecCCCCC
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAV--KVVDLDDYA 126 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~--~v~dl~~~~ 126 (669)
.+++|+++.+|--||+.-++.+|.+.+.+. |+.+ ...++.++.
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~--gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQCRVNEIE 64 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHT--TCCEEEEEECTTTTT
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEecHHHHh
Confidence 467899999999999999999999999887 6654 445666553
No 101
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=68.16 E-value=11 Score=33.84 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=59.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCC-CCCccchhHHhhhccCCe-EEEEEecCCCCCCChhHHHHHHH
Q 005924 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD-DYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~-~~~~~~~~~~~~l~~~~~-vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
.|+-++.-|..-++-..+...+-+.. |+ +++++- +...++ +.....+.+. +|.+|++. +.-...+.++.+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~-G~--~Vi~lG~~~p~e~--~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNA-GF--NVVNIGVLSPQEL--FIKAAIETKADAILVSSLY--GQGEIDCKGLRQK 77 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHT-TC--EEEEEEEEECHHH--HHHHHHHHTCSEEEEEECS--STHHHHHTTHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHC-CC--EEEECCCCCCHHH--HHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHH
Confidence 34445666665555555555544333 44 455553 233333 5555555554 44444444 3334557777778
Q ss_pred HhcCCCCCCCCCCceEEEEEec---CcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLG---NRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
|++.. +.+.++.|=|-. ...| ....+.++++|+..++..
T Consensus 78 l~~~g-----~~~i~v~vGG~~~~~~~~~-------~~~~~~~~~~G~d~~~~~ 119 (137)
T 1ccw_A 78 CDEAG-----LEGILLYVGGNIVVGKQHW-------PDVEKRFKDMGYDRVYAP 119 (137)
T ss_dssp HHHTT-----CTTCEEEEEESCSSSSCCH-------HHHHHHHHHTTCSEECCT
T ss_pred HHhcC-----CCCCEEEEECCCcCchHhh-------hhhHHHHHHCCCCEEECC
Confidence 87643 445666554421 2223 223467889999888754
No 102
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=63.53 E-value=41 Score=33.97 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=46.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCC-CeeEEecC-------CCCCccchhHHhhhccCCeEEEEEecCCCCCC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEK-AAVKVVDL-------DDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g-~~~~v~dl-------~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 154 (669)
..+|+|+-|...-.-+..+..|++.|.+. | ++|.+.+- +.++ ++ |.++++||+ .+.|+--+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~--g~f~V~~~~d~~~~~d~~~f~-~~------L~~~D~vV~--~~~~~~l~ 72 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENS--GRFDVDFVISPEQGKDMSGFV-LD------FSPYQLVVL--DYNGDSWP 72 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHT--TSEEEEEEECCCTTSCCTTCC-CC------CTTCSEEEE--CCCSSCCC
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhc--CCEEEEEEeCCccccchhHHh-hh------hhcCCEEEE--eCCCCcCC
Confidence 45788885544333577788888888876 5 88887632 2222 23 888999884 33333223
Q ss_pred ChhHHHHHHHHhc
Q 005924 155 TDNAARFYKWFTE 167 (669)
Q Consensus 155 p~~a~~F~~~L~~ 167 (669)
+...+.|.+++++
T Consensus 73 ~~~~~~l~~yV~~ 85 (281)
T 4e5v_A 73 EETNRRFLEYVQN 85 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4445667777765
No 103
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=53.65 E-value=29 Score=34.46 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhCCCeeEEecCCCCCcc-chhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 005924 100 FAKALAEEIKARYEKAAVKVVDLDDYAMD-DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (669)
Q Consensus 100 ~A~~la~~l~~~~~g~~~~v~dl~~~~~~-~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~ 167 (669)
++..|++.|.+. ++++++..+++.... + .+.|.++++||+...+.|.--.++..+.|.+++.+
T Consensus 33 ~~~~i~~~L~~~--gf~V~~~t~dd~~~~~~---~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~ 96 (252)
T 1t0b_A 33 MHTVIASYLAEA--GFDAATAVLDEPEHGLT---DEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE 96 (252)
T ss_dssp HHHHHHHHHHHT--TCEEEEEESSSGGGGCC---HHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--CcEEEEEeccCccccCC---HhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc
Confidence 355667888776 788988766554311 1 12388999999865554333344446677788865
No 104
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=52.27 E-value=18 Score=30.88 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe--cCCCCCccchhHHhhhccCCeEEEEEecC
Q 005924 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDYAMDDEQYEEKLKKETLAFFMVATY 149 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~--dl~~~~~~~~~~~~~l~~~~~vi~~~sTy 149 (669)
+++|+++.|+--+|+ -+++++.+.++++ |+.+++. ++.+... .+.+++ +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~--gi~~~i~a~~~~~~~~-------~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKY--EVPVIIEAFPETLAGE-------KGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHS--CCSEEEEEECSSSTTH-------HHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHC--CCCeEEEEecHHHHHh-------hccCCC-EEEEccch
Confidence 568999999999999 8999999999988 7766554 4444321 144566 44444544
No 105
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=51.00 E-value=37 Score=29.11 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEe--cCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~--dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
++++|+++.+ ..++|--+|+++.+.+.++ |+++++. ...+++ + .+.++++++++ |-. +
T Consensus 5 ~~mkIlL~C~-aGmSTsllv~km~~~a~~~--gi~v~i~a~~~~~~~--~-----~~~~~DvvLLg-PQV---------~ 64 (108)
T 3nbm_A 5 KELKVLVLCA-GSGTSAQLANAINEGANLT--EVRVIANSGAYGAHY--D-----IMGVYDLIILA-PQV---------R 64 (108)
T ss_dssp CCEEEEEEES-SSSHHHHHHHHHHHHHHHH--TCSEEEEEEETTSCT--T-----TGGGCSEEEEC-GGG---------G
T ss_pred cCceEEEECC-CCCCHHHHHHHHHHHHHHC--CCceEEEEcchHHHH--h-----hccCCCEEEEC-hHH---------H
Confidence 3567776655 4588888999999999988 8888874 444432 1 14567766553 333 2
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEE
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFG 184 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFG 184 (669)
..++.++.... -.|+.+.+.-
T Consensus 65 y~~~~ik~~~~----~~~ipV~vI~ 85 (108)
T 3nbm_A 65 SYYREMKVDAE----RLGIQIVATR 85 (108)
T ss_dssp GGHHHHHHHHT----TTTCEEEECC
T ss_pred HHHHHHHHHhh----hcCCcEEEeC
Confidence 22333433211 2378888875
No 106
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=50.53 E-value=18 Score=33.80 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
.+..+++|+-.||..-.-++..+..+.++|+++|++...-....||.+.+.+.+..|.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~ 65 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWI 65 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHH
Confidence 6678999999999976667777888999999999986654344454333444554443
No 107
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.60 E-value=1.9e+02 Score=27.98 Aligned_cols=137 Identities=10% Similarity=0.034 Sum_probs=71.8
Q ss_pred CCeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhh--ccCCeEEEEEecCCCCCCChh
Q 005924 83 KTKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL--KKETLAFFMVATYGDGEPTDN 157 (669)
Q Consensus 83 ~~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l--~~~~~vi~~~sTyG~G~~p~~ 157 (669)
...|.|+..+.. .--..+.+.+.+.+.+. |+.+.+++.+.-......+...+ ...+.+|+..+.. ++
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~- 79 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTT--QYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP-----ND- 79 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTS--SCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT-----TC-
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHc--CCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC-----Cc-
Confidence 345777776654 34566777777777766 77777765543222222233333 2456677653221 12
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCc----ch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
..++.+.+. +..+.+++.... .| ...-.+++..-+.|.+.|.+++.=++ ++... ......
T Consensus 80 --~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~-~~~~~---~~~~~R 145 (288)
T 3gv0_A 80 --PRVRFMTER--------NMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIV-PPSRF---SFHDHA 145 (288)
T ss_dssp --HHHHHHHHT--------TCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEEC-CCTTS---HHHHHH
T ss_pred --HHHHHHhhC--------CCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEc-CCccc---chHHHH
Confidence 245555442 344555443211 11 23345677778889999999986443 32221 222334
Q ss_pred HHHHHHHHHh
Q 005924 232 RELVWPELDQ 241 (669)
Q Consensus 232 ~~~l~~~L~~ 241 (669)
.+.+..++.+
T Consensus 146 ~~gf~~~l~~ 155 (288)
T 3gv0_A 146 RKGFNRGIRD 155 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 108
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=47.90 E-value=19 Score=30.78 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=28.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v 119 (669)
++++++.+|--||+ -+|++|.+.+.++ |+.+++
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~--gi~~~i 37 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSK--NINATI 37 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHH--TCSEEE
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHC--CCCeEE
Confidence 57999999999999 9999999999887 765443
No 109
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=46.17 E-value=1.6e+02 Score=28.29 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=73.5
Q ss_pred CCeEEEEEECCCch-HHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCCChhHH
Q 005924 83 KTKVTVFYGTQTGT-AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 83 ~~~v~I~YgSqtGt-te~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
...|.++..+.+.. -..+.+.+.+.+.+. |+.+.+.+...-......++..+. ..+.+|+.... ++...
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~------~~~~~ 76 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN------LDVLN 76 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC------HHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhhhH
Confidence 44677776654433 256778888888877 788877765432221222344443 44666654321 12344
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCc---ch--HHHHHHHHHHHHHHHH--cCCeEEecceeecCCCCcHHHHHHHH
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR---QY--EHFNKIGIVLDEELCK--QGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds---~Y--~~f~~~~k~ld~~L~~--lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
..++.+.+. +..+.+++.... .| ...-.+++.+-+.|.+ .|.+++.-++ ++.+ ......+.
T Consensus 77 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~-~~~~---~~~~~~R~ 144 (291)
T 3l49_A 77 PWLQKINDA--------GIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFN-GFYS---VPVCKIRY 144 (291)
T ss_dssp HHHHHHHHT--------TCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEEC-SCTT---SHHHHHHH
T ss_pred HHHHHHHHC--------CCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEe-CCCC---CchHHHHH
Confidence 456666542 444555543211 11 2233456677777777 8988876442 3222 22334455
Q ss_pred HHHHHHHHh
Q 005924 233 ELVWPELDQ 241 (669)
Q Consensus 233 ~~l~~~L~~ 241 (669)
+.+..++.+
T Consensus 145 ~gf~~~l~~ 153 (291)
T 3l49_A 145 DQMKYVLEA 153 (291)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 565566654
No 110
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=45.06 E-value=35 Score=33.83 Aligned_cols=91 Identities=12% Similarity=-0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCC
Q 005924 98 EGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (669)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~ 172 (669)
+.-|+.+++.|.+. |+++..+.+=+..+.. ...+..+.+++.+||.|++- ...|++.+.....+
T Consensus 23 ~~~a~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~na--------V~~~~~~l~~~~~~- 91 (269)
T 3re1_A 23 AEESAALARVLADA--GIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPA--------ARLAIELIDEVWPQ- 91 (269)
T ss_dssp HHHHHHHHHHHHTT--TCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHH--------HHHHHHHHHHHCSS-
T ss_pred hHHHHHHHHHHHHC--CCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHH--------HHHHHHHHHHhCCC-
Confidence 44467788888877 7766544332221111 12334567889888877654 66677777653222
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEec
Q 005924 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (669)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (669)
+.++++++.| ....+.|++.|.+...+
T Consensus 92 --~~~~~i~aVG-------------~~Ta~aL~~~G~~~~~~ 118 (269)
T 3re1_A 92 --PPMQPWFSVG-------------SATGQILLDYGLDASWP 118 (269)
T ss_dssp --CCCSCEEESS-------------HHHHHHHHHTTCCEECC
T ss_pred --cccCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4557777777 44556788889876543
No 111
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=44.18 E-value=35 Score=33.37 Aligned_cols=89 Identities=11% Similarity=-0.064 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhCCCeeEEecCCCCCccc-----hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCC
Q 005924 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (669)
Q Consensus 99 ~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-----~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~ 173 (669)
.-++.+++.|.+. |+++..+.+=+..+.. ...+..+.+++.+||.|++- ...|++.+.....+
T Consensus 16 ~~~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~a--------V~~~~~~l~~~~~~-- 83 (254)
T 4es6_A 16 EECAALAASLGEA--GVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPA--------ARLGLERLDRYWPQ-- 83 (254)
T ss_dssp HHHHHHHHHHHHT--TCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHH--------HHHHHHHHHHHCSS--
T ss_pred HHhHHHHHHHHHC--CCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHH--------HHHHHHHHHHhCCC--
Confidence 3456677777766 6665444332221110 11334567788888877654 66677777653221
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEe
Q 005924 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (669)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (669)
+.++++++.| ....+.|++.|.+...
T Consensus 84 -~~~~~i~aVG-------------~~Ta~~L~~~G~~~~~ 109 (254)
T 4es6_A 84 -PPQQTWCSVG-------------AATAAILEAYGLDVTY 109 (254)
T ss_dssp -CCSCEEEESS-------------HHHHHHHHHHTCCEEC
T ss_pred -cccCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 4557777777 4445667788987654
No 112
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=41.98 E-value=18 Score=31.43 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=37.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchh-HHhhhccCCeEEEE
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFM 145 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vi~~ 145 (669)
.-++|.|||+.+.+.+.|+.|. ++ |+.+.++++..+.+=+.+ +.+-+.+.+.++++
T Consensus 15 dv~iv~~Gs~~~~a~eA~~~L~----~~--Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 15 DITFVTWGSQKGPILDVIEDLK----EE--GISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHH----HT--TCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CEEEEEECccHHHHHHHHHHHH----HC--CCceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 3467779999999998887664 35 677888887766544422 34445555666554
No 113
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=40.16 E-value=17 Score=33.65 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCCceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 175 l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
.+..+++|+-.||.-+ .-++..+..+.+.|+++|++...-....|| +.+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4567999999999876 456777888999999999987643334455 55556665554
No 114
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=39.47 E-value=37 Score=32.82 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhCCCeeEEecCCCCCc--cchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCce
Q 005924 102 KALAEEIKARYEKAAVKVVDLDDYAM--DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLK 179 (669)
Q Consensus 102 ~~la~~l~~~~~g~~~~v~dl~~~~~--~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~L~~~~~~~~~l~~~~ 179 (669)
..+++.|.+. |+++..+.+=+..+ +....+..+.+++.+||.|++- ...|++.+... +.+++
T Consensus 14 ~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a--------V~~~~~~l~~~------l~~~~ 77 (240)
T 3mw8_A 14 AAMASALDAL--AIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA--------VSFATPWLKDQ------WPKAT 77 (240)
T ss_dssp HHHHHHHHHH--TCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH--------HHHHHHHHTTC------CCSSE
T ss_pred HHHHHHHHHC--CCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH--------HHHHHHHHHhh------CcCCe
Confidence 4455566655 66554332211111 1122445577889888877654 56667777531 66788
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 180 FGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 180 ~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
+++.| ....+.|++.|.+..
T Consensus 78 ~~aVG-------------~~Ta~~L~~~G~~~~ 97 (240)
T 3mw8_A 78 YYAVG-------------DATADALALQGITAE 97 (240)
T ss_dssp EEESS-------------HHHHHHHHHTTCCCE
T ss_pred EEEEC-------------HHHHHHHHHcCCCCc
Confidence 88877 455567888998653
No 115
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=38.81 E-value=15 Score=31.59 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=28.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (669)
.+++|+++.+|--||+.-++.+|.+.+.+. ++.
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~--gi~ 49 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQL--GVS 49 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHT--TCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHc--CCC
Confidence 367899999999999999999999999877 665
No 116
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=36.97 E-value=16 Score=34.44 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCceEEEEEecCcch-------HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQY-------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 175 l~~~~~avFGlGds~Y-------~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
.+..+++|+-.||..+ .-++..+..+.++|+++|++...-....||.+.+.+.+.+|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a 76 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA 76 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 6778999999999655 23566678888999999998664333334432333444444
No 117
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=35.55 E-value=2.5e+02 Score=26.88 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=75.9
Q ss_pred CeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCCChhHHH
Q 005924 84 TKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAAR 160 (669)
Q Consensus 84 ~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a~~ 160 (669)
..|.++..+.+. --..+.+.+.+.+.+. |+.+.+++...-.......+..+. ..+.+|+..... ..++....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS---ALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST---TSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc---cccCCcHH
Confidence 567777766544 3567788888888877 888887765432222222344443 345666543322 11222233
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCc--c--h--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHH
Q 005924 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR--Q--Y--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (669)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds--~--Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~ 234 (669)
.++.+... +..+.+++.... . | ...-.+++..-+.|.++|.+++.-++ +... .....+.+.
T Consensus 91 ~~~~~~~~--------~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~-~~~~----~~~~~R~~g 157 (298)
T 3tb6_A 91 YYLNLEKN--------GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIF-KADD----TQGVKRMNG 157 (298)
T ss_dssp HHHHHHHT--------TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEE-ESSS----HHHHHHHHH
T ss_pred HHHHHHhc--------CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEc-CCCC----ccHHHHHHH
Confidence 56666542 445555543211 1 1 22345667777888899998886443 2221 233344555
Q ss_pred HHHHHHh
Q 005924 235 VWPELDQ 241 (669)
Q Consensus 235 l~~~L~~ 241 (669)
+.+++.+
T Consensus 158 f~~~l~~ 164 (298)
T 3tb6_A 158 FIQAHRE 164 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566665
No 118
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.39 E-value=25 Score=32.72 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCceEEEEEecCcchHH-------HHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQYEH-------FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~-------f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
.+..+++|+-.||+.|+- ....+..+.++|+++|++.+.-....|+.+.+.+.+..|
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~ 76 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA 76 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 467899999999987731 244577899999999998765444455432333344333
No 119
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.31 E-value=2.1e+02 Score=27.44 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=72.1
Q ss_pred CCeEEEEEEC------CCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCC
Q 005924 83 KTKVTVFYGT------QTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEP 154 (669)
Q Consensus 83 ~~~v~I~YgS------qtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~ 154 (669)
...|.|+..+ ...-...+.+.+.+.+.+. |+.+.+++.++-......++..+. ..+.+|+..+..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~----- 80 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE----- 80 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT-----
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC-----
Confidence 3456666665 2334567777888888877 787777654322111122333343 346666643322
Q ss_pred ChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCc-----ch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHH
Q 005924 155 TDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (669)
Q Consensus 155 p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGds-----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~ 227 (669)
++ ..++.+... +..+.+++.... .| ...-.+++..-+.|.+.|.+++.-++ ++.. ...
T Consensus 81 ~~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~-~~~~---~~~ 145 (292)
T 3k4h_A 81 ND---RIIQYLHEQ--------NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIG-GGSD---LLV 145 (292)
T ss_dssp TC---HHHHHHHHT--------TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE-SCTT---BHH
T ss_pred Ch---HHHHHHHHC--------CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEe-Cccc---chh
Confidence 12 245555442 455555553211 11 22345677777888889999876443 3222 122
Q ss_pred HHHHHHHHHHHHHh
Q 005924 228 FTAWRELVWPELDQ 241 (669)
Q Consensus 228 f~~W~~~l~~~L~~ 241 (669)
.....+.+..++.+
T Consensus 146 ~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 146 TRDRLAGMSDALKL 159 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555566665
No 120
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=34.01 E-value=1.4e+02 Score=32.09 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=61.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCC---------CC-
Q 005924 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD---------GE- 153 (669)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~---------G~- 153 (669)
.+|.|+ |+.. ...+..|.+.|.+. |+++..+- .+...++ +..+.+..+.+++++.++. |.
T Consensus 197 ~~vnil-G~~~---~~~~~ei~~lL~~~--Gi~v~~~~-~~~~~~e---l~~~~~A~~ni~~~~~~~~~A~~Le~~~giP 266 (460)
T 2xdq_A 197 PPLVLF-GSLP---DPVVTQLTLELKKQ--GIKVSGWL-PAKRYTE---LPVIDEGYYVAGVNPFLSRTATTLIRRRKCQ 266 (460)
T ss_dssp CCEEEE-SCCC---HHHHHHHHHHHGGG--TCCEEEEE-SCSSGGG---CCCCCTTCEEEESSTTCHHHHHHHHHTTCCE
T ss_pred CcEEEE-EecC---ccHHHHHHHHHHHc--CCeEEEEe-CCCCHHH---HHccccCcEEEEcCHhHHHHHHHHHHHcCCC
Confidence 356655 7753 55567788888876 77776541 1223333 2234455666665555421 11
Q ss_pred -----CC---hhHHHHHHHHhcCCCCC-------------------CCCCCceEEEEEecCcchHHHHHHHHHHHHHHHH
Q 005924 154 -----PT---DNAARFYKWFTEGNDRG-------------------PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCK 206 (669)
Q Consensus 154 -----~p---~~a~~F~~~L~~~~~~~-------------------~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~ 206 (669)
.| ++..+|++.|.+..... ..+.|++++|||= ..+. .-+.+.|.+
T Consensus 267 ~~~~~~P~G~~~T~~~Lr~ia~~~g~~~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~--~~~~------~~la~~L~e 338 (460)
T 2xdq_A 267 LITAPFPIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSDYLELVRGKSVFFMGD--NLLE------ISLARFLIR 338 (460)
T ss_dssp EECCCCSBHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTTHHHHHHHTTCEEEECCC--SSCH------HHHHHHHHH
T ss_pred ceecCcCccHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC--chHH------HHHHHHHHH
Confidence 12 44455555554321110 2378999999973 3442 234456678
Q ss_pred cCCeEEe
Q 005924 207 QGGARLV 213 (669)
Q Consensus 207 lGa~~i~ 213 (669)
+|++.+.
T Consensus 339 lGm~vv~ 345 (460)
T 2xdq_A 339 CGMRVLE 345 (460)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 9998876
No 121
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.62 E-value=3.4e+02 Score=26.36 Aligned_cols=138 Identities=11% Similarity=0.025 Sum_probs=71.0
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCcc-chhHHhhhc--cCCeEEEEEecCCCCCCChhHH
Q 005924 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-DEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~-~~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
..|.|+..+.+ .--..+.+.+.+.+.+. |+.+.+.+.+ .+.+ ...++..+. ..+.+|+..... +...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~ 73 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYNG------QVLS 73 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSST------TSCH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh------hhhH
Confidence 35666665433 33466777888888877 7888777653 2322 122344443 345666543322 2223
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCc-----ch--HHHHHHHHHHHHHHH-HcCCeEEecceeecCCCCcHHHHHHH
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELC-KQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds-----~Y--~~f~~~~k~ld~~L~-~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
..++.+.+. +..+.+++.... .| ...-.+++..-+.|. ++|.+++.=++ ++... .....+
T Consensus 74 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~-g~~~~---~~~~~R 141 (313)
T 3m9w_A 74 NVVKEAKQE--------GIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMG-GSPVD---NNAKLF 141 (313)
T ss_dssp HHHHHHHTT--------TCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEE-SCTTC---HHHHHH
T ss_pred HHHHHHHHC--------CCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEE-CCCCC---ccHHHH
Confidence 455666542 455555543211 11 123345666666776 89998876432 33221 233344
Q ss_pred HHHHHHHHHhh
Q 005924 232 RELVWPELDQL 242 (669)
Q Consensus 232 ~~~l~~~L~~~ 242 (669)
.+.+..+|.+.
T Consensus 142 ~~Gf~~~l~~~ 152 (313)
T 3m9w_A 142 RAGQMKVLKPY 152 (313)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 45555566553
No 122
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=33.25 E-value=64 Score=28.28 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCC-e--eEEecCCCC
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA-A--VKVVDLDDY 125 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~-~--~~v~dl~~~ 125 (669)
.+++|+++.++--||+..++.+|.+.+.+. ++ . +...++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~--gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDA--GLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHT--TCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHC--CCceEEEEEeeHHHC
Confidence 467899999999999999999999999876 65 3 444455554
No 123
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=32.38 E-value=42 Score=32.56 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEe-c-CC---CCccCCCCeEEEeccC
Q 005924 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDV-S-GT---GITYETGDHVGVYVEN 340 (669)
Q Consensus 291 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di-~-~~---~~~Y~~GD~l~I~p~N 340 (669)
...++.++|+..+.++. +++.++|.. + +. .+.|+||.++.|..++
T Consensus 7 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 7 EVGSFEAEVVGLNWVSS-----NTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp CSSEEEEEBCCCEEEET-----TEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred CcceEEEEEEEEEEcCC-----CeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 34557788988888863 688999987 6 43 5899999999998754
No 124
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=31.85 E-value=1.9e+02 Score=28.24 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeeEEecCCCCC
Q 005924 83 KTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYA 126 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~~~v~dl~~~~ 126 (669)
+++|.|++|.++---+. .+..+++.+++. |+++.++|.++..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~--G~~v~~~~~~~~~ 46 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG--GIDAYPVDPKEVD 46 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT--TCEEEEECTTTSC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHC--CCeEEEEecCchH
Confidence 36899999877643332 567788888877 8889888887554
No 125
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.82 E-value=3e+02 Score=24.86 Aligned_cols=127 Identities=12% Similarity=-0.016 Sum_probs=67.0
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCC-CCccchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005924 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (669)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~~F~~~ 164 (669)
-.|+-++.-|..-.+-..+...+-+.. | .+++++.- ...++ +...+.+.+.-+++.|.. .+.-.+.+.++.+.
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~-G--~eVi~lG~~~p~e~--lv~aa~~~~~diV~lS~~-~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDA-G--FEVVYTGLRQTPEQ--VAMAAVQEDVDVIGVSIL-NGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHT-T--CEEECCCSBCCHHH--HHHHHHHTTCSEEEEEES-SSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHC-C--CEEEECCCCCCHHH--HHHHHHhcCCCEEEEEee-chhhHHHHHHHHHH
Confidence 345556777777666655555554444 4 55666643 33333 555566555434444443 23344667777888
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHHHHHHHH
Q 005924 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 239 (669)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L 239 (669)
|++.. +.+.++.|=| - .. . ... +.+++.|+..++..+ ....+...|...++..-
T Consensus 93 L~~~g-----~~~i~v~vGG--~-~~---~---~~~-~~l~~~G~d~v~~~~------~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 93 LRELG-----ADDIPVVLGG--T-IP---I---PDL-EPLRSLGIREIFLPG------TSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHTT-----CTTSCEEEEE--C-CC---H---HHH-HHHHHTTCCEEECTT------CCHHHHHHHHHHHHHHH
T ss_pred HHhcC-----CCCCEEEEeC--C-Cc---h---hcH-HHHHHCCCcEEECCC------CCHHHHHHHHHHHHHHh
Confidence 87643 3345555444 1 11 1 111 357789998655321 12344556766665543
No 126
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=30.27 E-value=35 Score=31.54 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
.+..+++|+-.||.--.-++..+..+.++|+++|++...-....||.+.+.+.+..|
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 67 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAG 67 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 466899999999987334556677788899999998664433444432344444444
No 127
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=29.65 E-value=84 Score=31.03 Aligned_cols=42 Identities=5% Similarity=0.169 Sum_probs=33.7
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~I~p~N 340 (669)
.+.++|+..+.++. ++++++|..++ ..+.|+||.||.|..+.
T Consensus 9 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 9 EWECEVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEEEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 35688998888863 68899998875 46889999999997654
No 128
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=28.57 E-value=3.5e+02 Score=26.07 Aligned_cols=138 Identities=7% Similarity=0.025 Sum_probs=72.4
Q ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccc-hhHHhhhc--cCCeEEEEEecCCCCCCChhH
Q 005924 83 KTKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLK--KETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 83 ~~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~-~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a 158 (669)
.++|.++..+.. .--..+.+.+.+.+.+. |+.+.++...+.+.+. ...+..+. ..+.+|+..... +..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~ 75 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP------VEL 75 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST------TTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH------HHH
Confidence 345555554433 34567777888888877 7877764333333322 12333332 346666543221 222
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCc-----ch--HHHHHHHHHHHHHHHHc--CCeEEecceeecCCCCcHHHHH
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCKQ--GGARLVPLGLGDDDQCIEDDFT 229 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds-----~Y--~~f~~~~k~ld~~L~~l--Ga~~i~~~g~gD~~~~~e~~f~ 229 (669)
...++.+.+. +..+.+++.... .| ...-.+++.+-+.|.+. |.+++.=++ +... ....
T Consensus 76 ~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~-~~~~----~~~~ 142 (305)
T 3g1w_A 76 TDTINKAVDA--------GIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT-LPNQ----LNHQ 142 (305)
T ss_dssp HHHHHHHHHT--------TCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE-CTTC----HHHH
T ss_pred HHHHHHHHHC--------CCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe-CCCc----ccHH
Confidence 3355565542 445555543211 11 22345667777788888 888886554 4321 3445
Q ss_pred HHHHHHHHHHHh
Q 005924 230 AWRELVWPELDQ 241 (669)
Q Consensus 230 ~W~~~l~~~L~~ 241 (669)
.+.+.+..++.+
T Consensus 143 ~R~~gf~~~l~~ 154 (305)
T 3g1w_A 143 ERTTGFKETLEA 154 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555666666665
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.13 E-value=4.1e+02 Score=25.56 Aligned_cols=136 Identities=8% Similarity=0.060 Sum_probs=73.4
Q ss_pred CCeEEEEEEC----C-CchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCCC
Q 005924 83 KTKVTVFYGT----Q-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPT 155 (669)
Q Consensus 83 ~~~v~I~YgS----q-tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~p 155 (669)
...|.++..+ . ..--..+.+.+.+.+.+. |+.+.+.+.++ ......++..+. ..+.+|+..... +
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~-----~ 77 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIPDEP-GEKYQSLIHLVETRRVDALIVAHTQP-----E 77 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEEECT-TCCCHHHHHHHHHTCCSEEEECSCCS-----S
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCC-----C
Confidence 3457777652 2 223456777788888877 88888877665 333333444443 456666654332 1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecC--cc--h--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHH
Q 005924 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGN--RQ--Y--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (669)
Q Consensus 156 ~~a~~F~~~L~~~~~~~~~l~~~~~avFGlGd--s~--Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~ 229 (669)
+ ..++.+... +..+.+++-.. .. | ...-.+++..-+.|.++|.++|.=++ +.... ....
T Consensus 78 ~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~-~~~~~---~~~~ 142 (294)
T 3qk7_A 78 D---FRLQYLQKQ--------NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVS-TDARI---SYVD 142 (294)
T ss_dssp C---HHHHHHHHT--------TCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEE-ESSCC---HHHH
T ss_pred h---HHHHHHHhC--------CCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEe-CCccc---chHH
Confidence 1 245555542 34555555321 11 1 22345667777888899999886443 33221 2233
Q ss_pred HHHHHHHHHHHh
Q 005924 230 AWRELVWPELDQ 241 (669)
Q Consensus 230 ~W~~~l~~~L~~ 241 (669)
...+.+..+|.+
T Consensus 143 ~R~~Gf~~al~~ 154 (294)
T 3qk7_A 143 QRLQGYVQTMSE 154 (294)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344455556654
No 130
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=27.65 E-value=94 Score=29.49 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=32.0
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
+.++|+..+.++. ++++++|..++ .+.|+||.++.|..++
T Consensus 3 ~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGq~v~l~~~~ 42 (232)
T 1qfj_A 3 LSCKVTSVEAITD-----TVYRVRIVPDA-AFSFRAGQYLMVVMDE 42 (232)
T ss_dssp EEEEEEEEEESSS-----SCEEEEEEESS-CCCCCTTCEEEEESSS
T ss_pred eEEEEEEEEecCC-----CEEEEEEecCC-CCCcCCCCEEEEECCC
Confidence 4578888888863 67888888764 6899999999998753
No 131
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=26.85 E-value=70 Score=31.30 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=32.9
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 005924 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (669)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N~ 341 (669)
.++|+..+.++. ++++++|..++....|+||.|+.|..++.
T Consensus 7 ~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~ 47 (262)
T 1ep3_B 7 MMTVVSQREVAY-----NIFEMVLKGTLVDEMDLPGQFLHLAVPNG 47 (262)
T ss_dssp EEEEEEEEEEET-----TEEEEEEESGGGGGCCSTTCEEEECCSCT
T ss_pred ceEEEEEEEecC-----CEEEEEEEcCcccccCCCCceEEEEcCCC
Confidence 588998888873 68899998765346899999999987653
No 132
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=26.57 E-value=1e+02 Score=30.06 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCCeeEEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 005924 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (669)
Q Consensus 292 ~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~--~~~Y~~GD~l~I~p~ 339 (669)
...+.++|+..++++. +++.++|..++. .+.|+||.++.|..+
T Consensus 10 ~~~~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 54 (270)
T 2cnd_A 10 RGRIHCRLVAKKELSR-----DVRLFRFSLPSPDQVLGLPIGKHIFVCAT 54 (270)
T ss_dssp -CCEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred CceEEEEEEEEEEeCC-----CeEEEEEECCCCccccCCCCCCEEEEEee
Confidence 4456789999999873 688899987653 478999999999754
No 133
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=26.06 E-value=1e+02 Score=31.33 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.2
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEeccC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVEN 340 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~~--~~~Y~~GD~l~I~p~N 340 (669)
++.++|+..+.++. ++++++|..++. .+.|+||.++.|..++
T Consensus 108 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 151 (338)
T 1krh_A 108 HFEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLPG 151 (338)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEEEEEcCC-----CEEEEEEEeCCCCCCCCcCCCCeEEEEcCC
Confidence 45688988888873 689999998763 6899999999998654
No 134
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=25.46 E-value=1.5e+02 Score=28.28 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=33.5
Q ss_pred CCCeeEEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 005924 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (669)
Q Consensus 292 ~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~--~~~Y~~GD~l~I~p~ 339 (669)
.....++|+..+.++. +++.++|.+++. ...|+||.|+.|..+
T Consensus 9 ~~~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~ 53 (243)
T 2eix_A 9 NEYKKFMLREKQIINH-----NTRLFRFNLHHPEDVVGLPIGQHMSVKAT 53 (243)
T ss_dssp SSCEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred CceEEEEEEEEEEeCC-----CeEEEEEEcCCCCcccCcCCceEEEEEEe
Confidence 3345689999999874 677888887752 578999999999865
No 135
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=24.12 E-value=1.4e+02 Score=30.06 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCC-C-CccCCCCeEEEeccC
Q 005924 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVEN 340 (669)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~-~~Y~~GD~l~I~p~N 340 (669)
.+.++|+..+.++. +++.++|..++. . ..|+||.||.|..+|
T Consensus 8 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 8 FLRLKIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred cEEEEEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 45688999998873 688999987753 2 389999999998764
No 136
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=24.09 E-value=5.5e+02 Score=25.68 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEEecc
Q 005924 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (669)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (669)
+....+++.. ...++++++.- .|.+.....+.+.+.+++.|++.+...
T Consensus 127 ~~~~~~~~~~-------~g~k~vaii~~---~~~~g~~~~~~~~~~~~~~g~~vv~~~ 174 (371)
T 4f06_A 127 TVPAAKVAKQ-------KGATKVAIAVS---DYGPGIDAETAFKKTFEAEGGKVVEAV 174 (371)
T ss_dssp HHHHHHHHHH-------TTCCEEEEEEE---SSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhhhhhhhh-------cCceEEEEEcC---CcccchhHHHHHHHHHHhcCCceEEEE
Confidence 4445566655 34678898872 345556677888899999999887654
No 137
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=23.50 E-value=1.5e+02 Score=29.72 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeeEEecCCCC
Q 005924 83 KTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDY 125 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~~~v~dl~~~ 125 (669)
+++|.|+||..+.--+- -|+.+.+.|.+. |+++.++|..+.
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~--g~~v~~i~~~~~ 56 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDA--GIDAHPFDPAER 56 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT--TCEEEEECTTTS
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 56899999977764433 477888888877 888888885544
No 138
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.73 E-value=3.6e+02 Score=25.75 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=67.4
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCCChhHH
Q 005924 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
...|.|+..+.+. --..+.+.+.+.+.+. |+.+.+++.+.-.......+..+. ..+.+|+... . ++...
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~-~-----~~~~~ 79 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVATSQNSRISEREQILEFVHLKVDAIFITTL-D-----DVYIG 79 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS-C-----TTTTH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC-C-----hHHHH
Confidence 3457777665443 3456677777888777 788877765422111122344443 3466665432 2 12223
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCc-----ch--HHHHHHHHHHHHHHHH-c-CCe-----EEecceeecCCCCcH
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCK-Q-GGA-----RLVPLGLGDDDQCIE 225 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds-----~Y--~~f~~~~k~ld~~L~~-l-Ga~-----~i~~~g~gD~~~~~e 225 (669)
..++.+.+. +..+.+++.... .| ...-.+++.+-+.|.+ + |.+ ++.-++ |+.. .
T Consensus 80 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~-g~~~---~ 147 (293)
T 3l6u_A 80 SAIEEAKKA--------GIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEIT-GTAN---V 147 (293)
T ss_dssp HHHHHHHHT--------TCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEE-CSTT---C
T ss_pred HHHHHHHHc--------CCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEE-CCCC---C
Confidence 355555542 344555543211 11 2233455666666666 5 776 765432 3222 1
Q ss_pred HHHHHHHHHHHHHHH
Q 005924 226 DDFTAWRELVWPELD 240 (669)
Q Consensus 226 ~~f~~W~~~l~~~L~ 240 (669)
.......+.+..++.
T Consensus 148 ~~~~~R~~gf~~~l~ 162 (293)
T 3l6u_A 148 YTTNERHRGFLKGIE 162 (293)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH
Confidence 233344445445554
No 139
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.17 E-value=2.4e+02 Score=28.16 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCee---EEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAV---KVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~---~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a 158 (669)
+.+++.|+| +.+...+..++.+.+.+.+. |..+ ..++..+.+... .+..+.+.+.=++++...+. .+
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~~--g~~v~~~~~~~~~~~d~~~--~~~~l~~~~~d~v~~~~~~~-----~a 207 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTAG--GGEIVEEIKVPLANPDFAP--FLQRMKDAKPDAMFVFVPAG-----QG 207 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHHT--TCEEEEEEEECSSSCCCHH--HHHHHHHHCCSEEEEECCTT-----CH
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCcHHH--HHHHHHhcCCCEEEEeccch-----HH
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchHHH
Q 005924 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF 193 (669)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f 193 (669)
..|++.+.+.. +.+..+.++|.++...+.+
T Consensus 208 ~~~~~~~~~~g-----~~~~~v~~~~~~~~~~~~~ 237 (368)
T 4eyg_A 208 GNFMKQFAERG-----LDKSGIKVIGPGDVMDDDL 237 (368)
T ss_dssp HHHHHHHHHTT-----GGGTTCEEEEETTTTCHHH
T ss_pred HHHHHHHHHcC-----CCcCCceEEecCcccCHHH
No 140
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=22.09 E-value=46 Score=31.07 Aligned_cols=56 Identities=20% Similarity=0.072 Sum_probs=38.0
Q ss_pred ceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHH
Q 005924 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (669)
Q Consensus 178 ~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~ 233 (669)
++++|+-.||.-. .-.+..+..+.+.|+++|++...-...+||.+.+.+.+.+|.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~ 61 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE 61 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 6899999998754 3455567778889999999866544445554345555555543
No 141
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=21.96 E-value=78 Score=29.78 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=32.9
Q ss_pred eEEEE-EECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005924 85 KVTVF-YGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 85 ~v~I~-YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
+|+|+ ||+ ||+.-++++| ++. |+++.+++ ++++ +.+.+.+|+ | |-|.+.+.+.
T Consensus 4 ~I~iiD~g~--~n~~si~~al----~~~--G~~~~v~~----~~~~------l~~~D~lil--P--G~g~~~~~~~ 57 (211)
T 4gud_A 4 NVVIIDTGC--ANISSVKFAI----ERL--GYAVTISR----DPQV------VLAADKLFL--P--GVGTASEAMK 57 (211)
T ss_dssp CEEEECCCC--TTHHHHHHHH----HHT--TCCEEEEC----CHHH------HHHCSEEEE--C--CCSCHHHHHH
T ss_pred EEEEEECCC--ChHHHHHHHH----HHC--CCEEEEEC----CHHH------HhCCCEEEE--C--CCCCHHHHHH
Confidence 46666 776 6777777665 345 67777752 2333 666777766 4 7777655433
No 142
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.93 E-value=70 Score=33.03 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCEEEEecCcc--cchHHHHHHHHHH
Q 005924 544 VPIIMVGPGTG--LAPFRGFLQERMA 567 (669)
Q Consensus 544 ~piImIa~GTG--IAPfrsflq~r~~ 567 (669)
+.|++.|+||| |-|.+++.++...
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~ 28 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQA 28 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 57889999997 8899999988764
No 143
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=21.89 E-value=1.3e+02 Score=29.51 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005924 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (669)
Q Consensus 292 ~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~I~p~N 340 (669)
..++.++|+..+.++. +++.++|..++ .+.|+||.|+.|..+.
T Consensus 14 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 56 (272)
T 2bgi_A 14 VLPDAQTVTSVRHWTD-----TLFSFRVTRPQ-TLRFRSGEFVMIGLLD 56 (272)
T ss_dssp --CEEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEC
T ss_pred EEeEEEEEEEEEEcCC-----CEEEEEEeCCC-CCccCCCCEEEEEecc
Confidence 3456789999999874 68888888664 5789999999998763
No 144
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=21.60 E-value=1.1e+02 Score=32.03 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhccCCeEEEEEe-cC-CCCCC-ChhH
Q 005924 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVA-TY-GDGEP-TDNA 158 (669)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vi~~~s-Ty-G~G~~-p~~a 158 (669)
+..|-.|.+.-..-..+++-+++.+.+.+..| . .+. -.|..... ..+..+.+.--++.+-+ .+ |.+.+ +.++
T Consensus 77 GG~Kggi~~dP~~~~~~~~~r~~~~~~~~l~g-~--~i~-A~D~Gt~~-~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg 151 (364)
T 1leh_A 77 GGGKTVIIGDPFADKNEDMFRALGRFIQGLNG-R--YIT-AEDVGTTV-DDMDLIHQETDYVTGISPAFGSSGNPSPVTA 151 (364)
T ss_dssp EEEEEEEESCTTTTCCHHHHHHHHHHHHTTTT-S--EEB-CBCTTCCH-HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHH
T ss_pred cCcceEEeCCCCCCCHHHHHHHHHHHHHHhcC-c--eEE-cccCCCCH-HHHHHHHHhcchhcccccccCCCCCcccchh
Confidence 35567777777666678888888887776543 2 221 12222211 23444443321211111 00 11111 1222
Q ss_pred HH---HHHHH-hcCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHHHHHHcCCeEE
Q 005924 159 AR---FYKWF-TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (669)
Q Consensus 159 ~~---F~~~L-~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (669)
.- |.+.+ +..-. ...|+|++++|.|+|+ ++..+-++|.++|++.+
T Consensus 152 ~GV~~~~~~~~~~~~G-~~~L~GktV~V~G~G~--------VG~~~A~~L~~~GakVv 200 (364)
T 1leh_A 152 YGVYRGMKAAAKEAFG-SDSLEGLAVSVQGLGN--------VAKALCKKLNTEGAKLV 200 (364)
T ss_dssp HHHHHHHHHHHHHHHS-SCCCTTCEEEEECCSH--------HHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHhhcc-ccCCCcCEEEEECchH--------HHHHHHHHHHHCCCEEE
Confidence 21 22222 21100 0138999999999774 67778888999999865
No 145
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.42 E-value=56 Score=31.09 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=33.6
Q ss_pred CceEEEEEecCcch--HHHHHHHHHHHHHHHHcCCe--EEecceeecCCCCcHHHHHHHH
Q 005924 177 QLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGA--RLVPLGLGDDDQCIEDDFTAWR 232 (669)
Q Consensus 177 ~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~--~i~~~g~gD~~~~~e~~f~~W~ 232 (669)
..+++|+-.||.-+ .-++..+..+.+.|+++|++ .+.-....||.+.+.+.+..|.
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~ 62 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELV 62 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999987 34566677888999999987 3332233344323444444443
No 146
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.03 E-value=4e+02 Score=25.47 Aligned_cols=137 Identities=7% Similarity=-0.011 Sum_probs=74.7
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeeEEecCCCCCccchhHHhhhc--cCCeEEEEEecCCCCCCChhHH
Q 005924 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (669)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~p~~a~ 159 (669)
...|.++..+.+. -...+.+.+.+.+.+. |+.+.+++..+-......++..+. ..+.+|+..... .+
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~--- 77 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-----EH--- 77 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-----CC---
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-----Ch---
Confidence 3457777655443 3456777788888877 788888765432222222444443 346666543322 11
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCc----ch--HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHHHH
Q 005924 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (669)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~ 233 (669)
..++.+.. .+..+.+++.... .| ...-.+++.+-+.|.++|.+++.=++ ++.. ......+.+
T Consensus 78 ~~~~~~~~--------~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~-~~~~---~~~~~~R~~ 145 (291)
T 3egc_A 78 DYLRTELP--------KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIV-GSAG---LMTSRERLK 145 (291)
T ss_dssp HHHHHSSC--------TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEEC-SCTT---SHHHHHHHH
T ss_pred HHHHHhhc--------cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEe-CCCC---CcCHHHHHH
Confidence 24455543 2455555554221 11 23345667777888889998875433 2222 234455566
Q ss_pred HHHHHHHh
Q 005924 234 LVWPELDQ 241 (669)
Q Consensus 234 ~l~~~L~~ 241 (669)
.+..++.+
T Consensus 146 gf~~~l~~ 153 (291)
T 3egc_A 146 GFRAAMSA 153 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 147
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.67 E-value=34 Score=32.35 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=38.5
Q ss_pred CCCceEEEEEecCcch-HHHHHHHHHHHHHHHHcCCeEEecceeecCCCCcHHHHHHH
Q 005924 175 LQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (669)
Q Consensus 175 l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W 231 (669)
.+..+++|+-.||.-+ +.++..+..+.+.|+++|++...-....||.+.+.+.+.+|
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a 85 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTA 85 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 5778999999999875 22777788899999999998664333344432333444433
No 148
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.22 E-value=3.1e+02 Score=23.29 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCeEEEEEECCCchHH--HHHHHHHHHHHhhhCCCeeEEe--cC----CCCCccchhHHhhhccCCeEEEEEecCCCCCC
Q 005924 83 KTKVTVFYGTQTGTAE--GFAKALAEEIKARYEKAAVKVV--DL----DDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (669)
Q Consensus 83 ~~~v~I~YgSqtGtte--~~A~~la~~l~~~~~g~~~~v~--dl----~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 154 (669)
+++++++-+--||-|- ..|+.|.+..+++ |+++++- .. +..+.++ +.+.+.||+..-+- .
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~--G~~ikVEtqgs~g~~n~Lt~~~------I~~AD~VIia~d~~----v 69 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKM--GNLIKVETQGATGIENELTEKD------VNIGEVVIFAVDTK----V 69 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHH--TCEEEEEEEETTEESSCCCHHH------HHHCSEEEEEESSC----C
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHC--CCEEEEEEecCccccCCCCHHH------HhhCCEEEEecccc----c
Confidence 4688999888888654 4589999999888 7776654 22 3333344 77889888886533 2
Q ss_pred ChhHHHHHHHHhcCCCCCCCCCCceEEEEEec
Q 005924 155 TDNAARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (669)
Q Consensus 155 p~~a~~F~~~L~~~~~~~~~l~~~~~avFGlG 186 (669)
++..+ |.|+++.-.+..
T Consensus 70 -~~~~R--------------F~gk~v~~~~v~ 86 (106)
T 2m1z_A 70 -RNKER--------------FDGKVVLEVPVS 86 (106)
T ss_dssp -STHHH--------------HTTSEEEEECTT
T ss_pred -cchhc--------------cCCCcEEEEcHH
Confidence 34444 346777777644
Done!