Query 005927
Match_columns 669
No_of_seqs 286 out of 1269
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 94.7 0.086 3E-06 41.2 6.8 28 92-119 44-73 (76)
2 1wj2_A Probable WRKY transcrip 94.7 0.068 2.3E-06 41.9 6.2 28 92-119 47-76 (78)
3 2rpr_A Flywch-type zinc finger 80.7 1.7 5.8E-05 35.0 4.4 24 92-120 51-74 (87)
4 3kks_A Integrase, IN; beta-str 61.6 13 0.00044 32.3 6.0 66 235-310 2-67 (152)
5 2lju_A Putative oxidoreductase 41.2 23 0.0008 29.5 3.8 40 9-52 47-88 (108)
6 3hph_A Integrase, IN; protein- 38.6 47 0.0016 30.9 6.2 66 236-311 61-126 (219)
7 1cxq_A Avian sarcoma virus int 33.2 1E+02 0.0034 26.9 7.2 71 235-310 11-81 (162)
8 3hot_A Transposable element ma 32.2 98 0.0033 31.0 7.8 56 248-306 186-252 (345)
9 2l69_A Rossmann 2X3 fold prote 30.8 34 0.0012 27.2 3.0 30 24-53 6-35 (134)
10 2jya_A AGR_C_3324P, uncharacte 30.7 30 0.001 28.7 2.7 40 10-53 40-81 (106)
11 1c0m_A Protein (integrase); HI 26.1 1.4E+02 0.0047 28.1 7.2 70 235-309 10-79 (238)
12 3l3u_A POL polyprotein; DNA in 24.8 84 0.0029 27.3 5.1 63 235-307 9-71 (163)
13 1x9b_A Hypothetical membrane p 24.7 79 0.0027 22.0 3.5 44 348-392 8-51 (53)
14 1bco_A MUA domain II, bacterio 21.2 1.1E+02 0.0037 30.7 5.6 70 235-307 16-93 (327)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=94.74 E-value=0.086 Score=41.18 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=25.1
Q ss_pred cccceEEEEEE--cCeEEEEEeeccCCCCC
Q 005927 92 GCKVLMRFTVS--NGVWVISHINFEHNHEL 119 (669)
Q Consensus 92 gCpa~i~v~~~--~~~w~V~~~~~~HNH~l 119 (669)
||||+=.|.+. +....++.+..+|||++
T Consensus 44 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 44 GCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp TCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 99999999987 66788899999999987
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=94.68 E-value=0.068 Score=41.94 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.2
Q ss_pred cccceEEEEEE--cCeEEEEEeeccCCCCC
Q 005927 92 GCKVLMRFTVS--NGVWVISHINFEHNHEL 119 (669)
Q Consensus 92 gCpa~i~v~~~--~~~w~V~~~~~~HNH~l 119 (669)
||||+=.|.+. +....++.+..+|||++
T Consensus 47 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 47 GCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred CCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 99999999987 66788889999999987
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=80.69 E-value=1.7 Score=34.96 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=16.9
Q ss_pred cccceEEEEEEcCeEEEEEeeccCCCCCC
Q 005927 92 GCKVLMRFTVSNGVWVISHINFEHNHELA 120 (669)
Q Consensus 92 gCpa~i~v~~~~~~w~V~~~~~~HNH~l~ 120 (669)
+|+|++.... +. | .....|||++.
T Consensus 51 kCrARi~T~~--~~--~-~~~~~HnH~p~ 74 (87)
T 2rpr_A 51 GCRSRAITQG--HR--I-MVMRSHCHQPD 74 (87)
T ss_dssp CCCCEEEEET--TE--E-EECSCCSSCCC
T ss_pred CCCEEEEEcC--CC--E-ECCCCcCCCCc
Confidence 8999987653 23 3 25678999874
No 4
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=61.58 E-value=13 Score=32.25 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=46.4
Q ss_pred CCEEEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHHHHH
Q 005927 235 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 310 (669)
Q Consensus 235 ~dvv~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a~~~ 310 (669)
++++.+|.|+..++ +.++.+|..-+.+ +++. +.+++.+...-+|..+....+ |..|.||+......
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQV-IPEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEE-eCCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 46788999988433 5566677765554 4444 457888877777766666554 99999999987754
No 5
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=41.23 E-value=23 Score=29.46 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=28.6
Q ss_pred ccccCCCCCCCC--CCCCccCCHHHHHHHHHHHHHhcCceEEecce
Q 005927 9 EALEGIGNDGEL--KVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHV 52 (669)
Q Consensus 9 ~~~~~~~~~~~p--~~G~~F~S~eea~~fy~~YA~~~GF~vr~~~s 52 (669)
.-|.|+--...| .+.+.|+|.|+|.. ||.++|....+.-.
T Consensus 47 nPLMGWtsS~D~~~qv~L~F~skE~Aia----yAek~G~~y~V~ep 88 (108)
T 2lju_A 47 EPLMNWTGSHDTKQQVCLSFTTRELAIA----YAVAHKIDYTVLQD 88 (108)
T ss_dssp CCCCCCSSSCCCCCCSCEEESSHHHHHH----HHHHTTCEEEEECS
T ss_pred CCCccccCCCCccccceEecCCHHHHHH----HHHHcCCEEEEecC
Confidence 345555444444 57889999999985 78999998876544
No 6
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=38.63 E-value=47 Score=30.91 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.1
Q ss_pred CEEEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHHHHHH
Q 005927 236 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKA 311 (669)
Q Consensus 236 dvv~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a~~~A 311 (669)
+++.+|.|+..++ +.++.+|..-+-+ .+. .+.+.+.+...-+|..+....+ |.+|.||+.......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAE-RVKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEE-EeCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 6777888876543 4566677766655 433 3567777777777666555554 999999999877543
No 7
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=33.19 E-value=1e+02 Score=26.89 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=46.9
Q ss_pred CCEEEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHHHHH
Q 005927 235 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 310 (669)
Q Consensus 235 ~dvv~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a~~~ 310 (669)
.+++.+|.|+.....+ -.+.++.+|..-+.+ +|+.+- +.+.+...-+|+......+ .|..|.||+.....+
T Consensus 11 ~~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGTT-SCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCCC-CEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 3678888887654333 355566777765544 455544 7777777666666655554 488999999987653
No 8
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=32.24 E-value=98 Score=30.96 Aligned_cols=56 Identities=5% Similarity=0.028 Sum_probs=34.9
Q ss_pred cCCceeeeEEEeccCCChhhhhhhhhc---CCChhHHHHHHHHHHHHh----CC----CCCcEEeCcccH
Q 005927 248 KYNLICAPFVGVNHHWKNMLFGCAFLL---DESTHSYVWLFESFLESM----GN----TQPKTIFTNENE 306 (669)
Q Consensus 248 ~y~~pl~~~~gv~~~~~~~~~~~al~~---~Et~es~~w~l~~f~~~~----~~----~~p~~iitD~~~ 306 (669)
..+.-+....+++..| ++++.++. .-+.+.|.-+|+.++..+ +. ..+.+++.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3444555556666666 45566665 567888888887776554 22 235688999754
No 9
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.84 E-value=34 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.7
Q ss_pred CccCCHHHHHHHHHHHHHhcCceEEeccee
Q 005927 24 TEVKSDAEAYNLCNNYAFRKGFSLRKGHVR 53 (669)
Q Consensus 24 ~~F~S~eea~~fy~~YA~~~GF~vr~~~s~ 53 (669)
.+|.+.||...-+...-+++||.||..+|-
T Consensus 6 vvfstdeetlrkfkdiikkngfkvrtvrsp 35 (134)
T 2l69_A 6 VVFSTDEETLRKFKDIIKKNGFKVRTVRSP 35 (134)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEEEecCH
Confidence 368889999999999999999999887774
No 10
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=30.69 E-value=30 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=28.9
Q ss_pred cccCCCCCCCC--CCCCccCCHHHHHHHHHHHHHhcCceEEeccee
Q 005927 10 ALEGIGNDGEL--KVGTEVKSDAEAYNLCNNYAFRKGFSLRKGHVR 53 (669)
Q Consensus 10 ~~~~~~~~~~p--~~G~~F~S~eea~~fy~~YA~~~GF~vr~~~s~ 53 (669)
-|.|+-....| .+.+.|+|.|+|.. ||.++|....+.-..
T Consensus 40 PLMGWtsS~D~~~qv~L~F~skE~Aia----yAek~G~~y~V~ep~ 81 (106)
T 2jya_A 40 PIMGYTSSSDMKQQVKLTFETQEQAEA----YAQRKGIEYRVILPK 81 (106)
T ss_dssp TTTCSCSCCCSEEEEEEEESSHHHHHH----HHHHHTCEEEECCCT
T ss_pred CCcCcCCCCCccccceEecCCHHHHHH----HHHHcCCEEEEeCCC
Confidence 44555554445 47889999999985 788999988776543
No 11
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=26.08 E-value=1.4e+02 Score=28.14 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=48.4
Q ss_pred CCEEEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHHHH
Q 005927 235 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 309 (669)
Q Consensus 235 ~dvv~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a~~ 309 (669)
.+++.+|.|+.....+ -.+.++.+|..-+. ++|+.+- +++.+...-+|.......+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSA-IVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGGCS-SCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHH
T ss_pred CCEEEEeeccccccCC-CEEEEEEEECCCCC-EEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccc
Confidence 4688899998654333 35556667766544 4456554 8888888777777666655 48899999988764
No 12
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=24.78 E-value=84 Score=27.34 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred CCEEEecceeccccCCceeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCcEEeCcccHH
Q 005927 235 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEA 307 (669)
Q Consensus 235 ~dvv~~D~Ty~~n~y~~pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~~iitD~~~a 307 (669)
.+++.+|.|+..++ +.++.+|..-+.+ +++.+ .+++.+...-++..+....+ |.+|.||+...
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~ 71 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSN 71 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHh
Confidence 47888999997653 4666777766654 44444 56777777777666555543 58999998744
No 13
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=24.66 E-value=79 Score=21.96 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhhcCCCchHHHHHHHHhhcccc
Q 005927 348 YLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWC 392 (669)
Q Consensus 348 ~~~~~v~~~~~~~eFe~~w~~l~~~~~~~~~~~l~~~~~~r~~W~ 392 (669)
.|...|. |++...|.....++...-.--+..|...+-+.+++|-
T Consensus 8 ~Fe~~In-S~SK~~Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 51 (53)
T 1x9b_A 8 KFESMIN-SPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHH-SCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CccHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 4555555 8899999999888765322223567777777888884
No 14
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=21.23 E-value=1.1e+02 Score=30.67 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=47.3
Q ss_pred CCEEEecceecccc----CCc--eeeeEEEeccCCChhhhhhhhhcCCChhHHHHHHHHHHHHhCCCCCc--EEeCcccH
Q 005927 235 GDVVSFDATFRLNK----YNL--ICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPK--TIFTNENE 306 (669)
Q Consensus 235 ~dvv~~D~Ty~~n~----y~~--pl~~~~gv~~~~~~~~~~~al~~~Et~es~~w~l~~f~~~~~~~~p~--~iitD~~~ 306 (669)
++++.+|.|+..-. .+. .....+.+|..-+ .++|+.+...++.++..-+|.......+ .|. .|.+|...
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 47888888864332 121 2345556666554 4578888889999988887776665544 577 99999875
Q ss_pred H
Q 005927 307 A 307 (669)
Q Consensus 307 a 307 (669)
.
T Consensus 93 ~ 93 (327)
T 1bco_A 93 G 93 (327)
T ss_dssp S
T ss_pred h
Confidence 4
Done!