Query 005929
Match_columns 669
No_of_seqs 153 out of 323
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 15:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 4.4E-37 9.5E-42 263.2 -2.8 78 172-249 1-78 (79)
2 PF10866 DUF2704: Protein of u 71.9 3.2 7E-05 41.3 2.8 31 586-616 123-160 (168)
3 cd02969 PRX_like1 Peroxiredoxi 41.5 43 0.00092 31.4 4.5 47 566-612 117-169 (171)
4 PF14901 Jiv90: Cleavage induc 37.2 16 0.00035 33.7 1.0 19 209-227 25-43 (94)
5 PRK00241 nudC NADH pyrophospha 35.6 12 0.00026 38.8 -0.0 37 185-222 92-128 (256)
6 PRK07217 replication factor A; 35.5 22 0.00049 38.6 1.9 80 127-214 144-232 (311)
7 PF09297 zf-NADH-PPase: NADH p 34.2 13 0.00028 27.1 -0.0 31 190-221 1-31 (32)
8 COG2816 NPY1 NTP pyrophosphohy 33.5 14 0.00031 39.5 0.1 36 185-221 104-139 (279)
9 PF11013 DUF2851: Protein of u 24.6 1.1E+02 0.0023 34.2 4.8 65 568-653 256-320 (377)
10 PF10915 DUF2709: Protein of u 19.2 76 0.0016 33.1 2.1 35 566-603 82-121 (238)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=4.4e-37 Score=263.21 Aligned_cols=78 Identities=65% Similarity=1.119 Sum_probs=63.1
Q ss_pred CcccCCChhhhccchhhhccccccccccccceeeeCCchhhHhhhhhcccCCCccccccchHHHHHHHHHHhhccCCC
Q 005929 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 (669)
Q Consensus 172 ~CQVdGC~adLs~~k~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rLa~Hn~RRRk~qp 249 (669)
+||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999765
No 2
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=71.87 E-value=3.2 Score=41.26 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=25.2
Q ss_pred hHHHHHHHHhcCCCC-------CCcccccCCceeeeeh
Q 005929 586 TLRKEIYNWLSNSPS-------EMESYIRPGCVILSLY 616 (669)
Q Consensus 586 ~LR~QI~~WLs~sPt-------dmEsYIRPGCiiLTiy 616 (669)
++..+|+|-|.+.=+ .--|||.|.|||+|.-
T Consensus 123 T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf~ 160 (168)
T PF10866_consen 123 TFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTFN 160 (168)
T ss_pred HHHHHHHHHHhhhccccccccccccCccCCCeEEEeee
Confidence 578899999987655 3469999999999964
No 3
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=41.46 E-value=43 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=34.6
Q ss_pred CccccEEEEe-cCCCC-----CCCchhHHHHHHHHhcCCCCCCcccccCCcee
Q 005929 566 DCTGRIIFKL-FDKDP-----SQFPGTLRKEIYNWLSNSPSEMESYIRPGCVI 612 (669)
Q Consensus 566 ~RT~RI~FKL-F~k~P-----~dfP~~LR~QI~~WLs~sPtdmEsYIRPGCii 612 (669)
++.|||+|.= ++-.. .-=...|+..|-.||+..+...|--+-+||.+
T Consensus 117 d~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 117 DPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred CCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 5778888751 11111 11235699999999999999999999999975
No 4
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=37.21 E-value=16 Score=33.68 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=15.3
Q ss_pred chhhHhhhhhcccCCCccc
Q 005929 209 QMQRFCQQCSRFHPLSEFD 227 (669)
Q Consensus 209 ~~qRFCQQCsRFH~L~eFD 227 (669)
..-||||+|..+|+..+=|
T Consensus 25 ~~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 25 SAARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhhHhHHHhhhhcccccCC
Confidence 3569999999999876644
No 5
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=35.55 E-value=12 Score=38.80 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=28.1
Q ss_pred chhhhccccccccccccceeeeCCchhhHhhhhhcccC
Q 005929 185 AKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222 (669)
Q Consensus 185 ~k~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~ 222 (669)
+-.+|++||-|..+-....+. .+...|.|..|+..|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEEC
Confidence 457999999998777665554 4556689999997763
No 6
>PRK07217 replication factor A; Reviewed
Probab=35.54 E-value=22 Score=38.64 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCCcccccCCCccccccCCCCCCCCCC-CCCCccccCCCCCCCCCCCcccCCChhhhccchhhhccccccccccccc---
Q 005929 127 DDGRLDLNLGGGLTAVDVEQPEPPVVT-SKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKST--- 202 (669)
Q Consensus 127 ~~~~l~l~Lgg~~~~~~~~~~~~~~~~-~~p~Kr~R~g~~g~~~~~~CQVdGC~adLs~~k~YhrRhrVCe~H~KA~--- 202 (669)
-.++++||||..+......+....... .......=.-++|++--.+|-.+||+.-|+. -.|+.|=+..
T Consensus 144 y~G~~~lnlg~~t~I~~~de~IeV~~~~vei~G~lVdi~~GsglI~rCP~~~C~Rvl~~--------g~C~~HG~ve~~~ 215 (311)
T PRK07217 144 YQGRFSVKLNRTTSIEELDEDIEVGDDEVEVEGALVDIQSGSGLIKRCPEEDCTRVLQN--------GRCSEHGKVEGEF 215 (311)
T ss_pred ECCEEEEEeCCceEEEeCCCCccccCccccceeEEEEEeCCCCCeecCCccccCccccC--------CCCCCCCCcCCce
Confidence 347889999987655533332111111 1111111133455677889999999999965 4799998765
Q ss_pred -----eeeeCCchhhHh
Q 005929 203 -----KALVGKQMQRFC 214 (669)
Q Consensus 203 -----~V~v~G~~qRFC 214 (669)
.|+=+|.....|
T Consensus 216 DLrik~vlDDGt~~~~~ 232 (311)
T PRK07217 216 DLRIKGVLDDGEEVQEV 232 (311)
T ss_pred eeEEEEEEECCCCeEEE
Confidence 244466654443
No 7
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=34.25 E-value=13 Score=27.12 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=17.0
Q ss_pred ccccccccccccceeeeCCchhhHhhhhhccc
Q 005929 190 RRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (669)
Q Consensus 190 rRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH 221 (669)
++||-|.. .-++++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~-CG~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGR-CGAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TT-T--BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCc-CCccccCCCCcCEeECCCCcCEe
Confidence 45777743 45666666666778888888654
No 8
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=33.54 E-value=14 Score=39.54 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=29.2
Q ss_pred chhhhccccccccccccceeeeCCchhhHhhhhhccc
Q 005929 185 AKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (669)
Q Consensus 185 ~k~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH 221 (669)
+-.+|++||.| -++-.++....|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFC-g~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFC-GRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCC-CCCCCcCccccCceeeeCCCCCCcc
Confidence 34689999999 4667777778888889999999765
No 9
>PF11013 DUF2851: Protein of unknown function (DUF2851); InterPro: IPR021272 This bacterial family of proteins has no known function.
Probab=24.62 E-value=1.1e+02 Score=34.23 Aligned_cols=65 Identities=22% Similarity=0.427 Sum_probs=49.5
Q ss_pred cccEEEEecCCCCCCCchhHHHHHHHHhcCCCCCCcccccCCceeeeehhcCChhhHHHHHHhHHHHHHHhhcCCCchhh
Q 005929 568 TGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFW 647 (669)
Q Consensus 568 T~RI~FKLF~k~P~dfP~~LR~QI~~WLs~sPtdmEsYIRPGCiiLTiyl~m~~~aWeeL~~~l~~~l~~Ll~~s~~~fW 647 (669)
.++..+|.|.--|.-||-.==+|+.+|+...+. +|- .=++..-...|.+|++...++||
T Consensus 256 ~~~~~w~f~rlRP~NFPtiRLAqLA~L~~~~~~--------------Lfs-------~l~~~~~~~~l~~lf~v~~s~YW 314 (377)
T PF11013_consen 256 MDRSEWKFFRLRPANFPTIRLAQLAALYHKSQN--------------LFS-------KLLEAKSLEELYKLFSVEASEYW 314 (377)
T ss_pred CCcccceECCCCCCCCCHHHHHHHHHHHHcCch--------------HHH-------HHHccCCHHHHHHHhCCCCChHH
Confidence 345679999999999999989999999998421 111 11223455678999999999999
Q ss_pred ccceeE
Q 005929 648 RNARFL 653 (669)
Q Consensus 648 ~~g~~~ 653 (669)
.++..+
T Consensus 315 ~~Hy~F 320 (377)
T PF11013_consen 315 KTHYTF 320 (377)
T ss_pred hhhccC
Confidence 999865
No 10
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=19.16 E-value=76 Score=33.15 Aligned_cols=35 Identities=31% Similarity=0.686 Sum_probs=26.9
Q ss_pred CccccEEE-----EecCCCCCCCchhHHHHHHHHhcCCCCCCc
Q 005929 566 DCTGRIIF-----KLFDKDPSQFPGTLRKEIYNWLSNSPSEME 603 (669)
Q Consensus 566 ~RT~RI~F-----KLF~k~P~dfP~~LR~QI~~WLs~sPtdmE 603 (669)
.-|-||-- |.|+-|-..=|. .-|++|||..|.++|
T Consensus 82 E~TkkIYICPFTGKVF~DNt~~nPQ---DAIYDWvSkCPeN~E 121 (238)
T PF10915_consen 82 EQTKKIYICPFTGKVFGDNTHPNPQ---DAIYDWVSKCPENTE 121 (238)
T ss_pred cccceEEEcCCcCccccCCCCCChH---HHHHHHHhhCCccch
Confidence 45666653 888887665555 579999999999988
Done!