BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005930
(669 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKG2|BRD7_CHICK Bromodomain-containing protein 7 OS=Gallus gallus GN=BRD7 PE=2 SV=1
Length = 651
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 10 LSDVF-LICTNAMQYNAPDTVYHKQAR-----AIQELAKKKFHRLRAGIE 53
L D F L+CTNAM YN PDT+Y+K A+ ++ L++++ L+ IE
Sbjct: 196 LKDNFKLMCTNAMTYNKPDTIYYKAAKKLLHSGMKILSQERIQSLKQSIE 245
>sp|Q3UQU0|BRD9_MOUSE Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1
Length = 596
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 11 SDVFLICTNAMQYNAPDTVYHKQARAI 37
+D L+C NAM YN PDTVY+K A+ I
Sbjct: 203 ADFKLMCDNAMTYNRPDTVYYKLAKKI 229
>sp|Q9H8M2|BRD9_HUMAN Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2
Length = 597
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 11 SDVFLICTNAMQYNAPDTVYHKQARAI 37
+D L+C NAM YN PDTVY+K A+ I
Sbjct: 203 ADFKLMCDNAMTYNRPDTVYYKLAKKI 229
>sp|Q5R8B0|BRD7_PONAB Bromodomain-containing protein 7 OS=Pongo abelii GN=BRD7 PE=2 SV=1
Length = 651
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 10 LSDVF-LICTNAMQYNAPDTVYHKQAR-----AIQELAKKKFHRLRAGIE 53
L D F L+CTNAM YN P+T+Y+K A+ ++ L++++ L+ I+
Sbjct: 196 LKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|Q9NPI1|BRD7_HUMAN Bromodomain-containing protein 7 OS=Homo sapiens GN=BRD7 PE=1 SV=1
Length = 651
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 10 LSDVF-LICTNAMQYNAPDTVYHKQAR-----AIQELAKKKFHRLRAGIE 53
L D F L+CTNAM YN P+T+Y+K A+ ++ L++++ L+ I+
Sbjct: 196 LKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|O88665|BRD7_MOUSE Bromodomain-containing protein 7 OS=Mus musculus GN=Brd7 PE=1 SV=1
Length = 651
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 10 LSDVF-LICTNAMQYNAPDTVYHKQAR-----AIQELAKKKFHRLRAGIE 53
L D F L+CTNAM YN P+T+Y+K A+ ++ L++++ L+ I+
Sbjct: 196 LKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens
GN=BRPF3 PE=1 SV=2
Length = 1205
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 12 DVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKEL 71
D LI TN M+YNA DT++H+ A +++L R E + PE+ +L +
Sbjct: 657 DFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENIGYD--PERGTHLPESP 714
Query: 72 RLEKDLKSEPKTKSSILVKKQTKKHFSRTIQ 102
+LE + + +IL+ + + H S +Q
Sbjct: 715 KLEDFYRFSWEDVDNILI-PENRAHLSPEVQ 744
>sp|Q6NVM8|BRD9_XENTR Bromodomain-containing protein 9 OS=Xenopus tropicalis GN=brd9 PE=2
SV=1
Length = 596
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 11 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFH 46
+D L+C NAM YN P+TVY+K LAKK H
Sbjct: 215 ADFKLMCDNAMTYNRPETVYYK-------LAKKLLH 243
>sp|Q6GLP7|BRD9_XENLA Bromodomain-containing protein 9 OS=Xenopus laevis GN=brd9 PE=2
SV=1
Length = 527
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 11 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFH 46
+D L+C NAM YN P+TVY+K LAKK H
Sbjct: 145 ADFKLMCDNAMTYNRPETVYYK-------LAKKLLH 173
>sp|Q7ZUF2|BRD9_DANRE Bromodomain-containing protein 9 OS=Danio rerio GN=brd9 PE=2 SV=1
Length = 631
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 11 SDVFLICTNAMQYNAPDTVYHKQARAI 37
+D L+C NAM YN P+TVY+K A+ +
Sbjct: 233 ADFKLMCDNAMVYNRPETVYYKAAKKL 259
>sp|C7R3Z4|MSHC_JONDD L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside
ligase OS=Jonesia denitrificans (strain ATCC 14870 / DSM
20603 / CIP 55134) GN=mshC PE=3 SV=1
Length = 423
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 297 AFRIPIPAKVHPVHRPISE-----GNSPLFRPANGLTPEGKTPHFSSAGKKPSTP 346
A+R+P+PA+ PVH P + + P F +G T E + F+ G P+TP
Sbjct: 151 AYRVPVPAQERPVHSPAYDIYADVTSDPDFGSISGYTSEERVRLFTDRGGDPATP 205
>sp|A5DSF0|YME2_LODEL Mitochondrial escape protein 2 OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=YME2 PE=3 SV=1
Length = 862
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 35 RAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTK 94
+AI+ L +++ + IE+ + LK ++++ + LRLE+ L P++K I++ K +
Sbjct: 506 QAIRSLTDGDYNKYKTNIEKKNRRLKDDEKIEV---LRLEEFLAQHPESKPIIVINKFAR 562
Query: 95 KH--FSRTIQEPVGSDFSSGA-------TLATTGDI 121
K S P+ +D++SG + TT D+
Sbjct: 563 KADVLSNDFIFPLIADWASGLIQNNIAHVVFTTADV 598
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 51 GIERSEKE-LKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQE 103
++R E+E L+ E+EL +++ RLE++ K E K L KK+ +K R IQE
Sbjct: 2662 ALKRQEQERLQKEEELKRQEQERLERE-KQEQLQKEEELRKKEQEKQQQRNIQE 2714
>sp|A4QCS3|GLMU_CORGB Bifunctional protein GlmU OS=Corynebacterium glutamicum (strain R)
GN=glmU PE=3 SV=1
Length = 485
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 168 SKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARF 227
+ +GR VP +I + + + S+F ++GE KH +G H S F
Sbjct: 364 ATIGRGSKVPHLTYVGDATIGEESNIGASSVFVNYDGENKHHTTIGSHVRTG---SDTMF 420
Query: 228 AA--TLGPVAWKVASRRIEQALPAG---CKFGR-----GWVGEYEP 263
A T+G A+ A I+ +P G GR GWV + P
Sbjct: 421 IAPVTVGDGAYSGAGTVIKDDVPPGALAVSGGRQRNIEGWVQKKRP 466
>sp|Q8NRU8|GLMU_CORGL Bifunctional protein GlmU OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=glmU PE=3 SV=1
Length = 485
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 168 SKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARF 227
+ +GR VP +I + + + S+F ++GE KH +G H S F
Sbjct: 364 ATIGRGSKVPHLTYVGDATIGEESNIGASSVFVNYDGENKHHTTIGSHVRTG---SDTMF 420
Query: 228 AA--TLGPVAWKVASRRIEQALPAG---CKFGR-----GWVGEYEP 263
A T+G A+ A I+ +P G GR GWV + P
Sbjct: 421 IAPVTVGDGAYSGAGTVIKDDVPPGALAVSGGRQRNIEGWVQKKRP 466
>sp|Q80UV9|TAF1_MOUSE Transcription initiation factor TFIID subunit 1 OS=Mus musculus
GN=Taf1 PE=2 SV=2
Length = 1891
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 5 SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKEL 59
S + L DV LI N+++YN P++ Y K A+ I + + + + EK++
Sbjct: 1585 SRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDI 1639
>sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 OS=Homo sapiens
GN=TAF1 PE=1 SV=2
Length = 1872
Score = 32.7 bits (73), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 5 SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKEL 59
S + L DV LI N+++YN P++ Y K A+ I + + + + EK++
Sbjct: 1564 SRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 1618
>sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens
GN=TAF1L PE=1 SV=1
Length = 1826
Score = 32.7 bits (73), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 5 SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKEL 59
S + L DV LI N+++YN P++ Y K A+ I + + + + EK++
Sbjct: 1583 SRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNICYQTITEYDEHLTQLEKDI 1637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,269,890
Number of Sequences: 539616
Number of extensions: 10848816
Number of successful extensions: 32749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 32272
Number of HSP's gapped (non-prelim): 577
length of query: 669
length of database: 191,569,459
effective HSP length: 124
effective length of query: 545
effective length of database: 124,657,075
effective search space: 67938105875
effective search space used: 67938105875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)