Query 005930
Match_columns 669
No_of_seqs 128 out of 156
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 15:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0955 PHD finger protein BR1 99.6 3E-16 6.5E-21 182.3 4.6 239 2-261 619-866 (1051)
2 cd05513 Bromo_brd7_like Bromod 98.9 2.3E-09 5E-14 95.3 4.8 43 2-44 55-97 (98)
3 cd05512 Bromo_brd1_like Bromod 98.8 2.8E-09 6.2E-14 94.4 4.0 43 2-44 55-97 (98)
4 cd05507 Bromo_brd8_like Bromod 98.7 3.5E-08 7.6E-13 88.0 5.8 47 2-48 57-103 (104)
5 cd05511 Bromo_TFIID Bromodomai 98.6 3.2E-08 7E-13 89.5 5.4 53 2-54 54-106 (112)
6 cd05504 Bromo_Acf1_like Bromod 98.6 4.4E-08 9.4E-13 89.1 6.2 49 2-50 66-114 (115)
7 cd05509 Bromo_gcn5_like Bromod 98.6 5.7E-08 1.2E-12 85.3 5.9 47 2-48 55-101 (101)
8 cd05492 Bromo_ZMYND11 Bromodom 98.6 6.7E-08 1.4E-12 88.0 6.3 48 2-49 60-107 (109)
9 cd05508 Bromo_RACK7 Bromodomai 98.6 5.3E-08 1.1E-12 86.8 5.2 43 2-44 56-98 (99)
10 cd05510 Bromo_SPT7_like Bromod 98.6 7.4E-08 1.6E-12 87.6 6.1 48 2-49 62-110 (112)
11 cd05495 Bromo_cbp_like Bromodo 98.6 1E-07 2.3E-12 85.7 6.2 47 2-48 60-106 (108)
12 cd05524 Bromo_polybromo_I Brom 98.6 1E-07 2.2E-12 86.5 6.2 48 2-49 62-109 (113)
13 cd05516 Bromo_SNF2L2 Bromodoma 98.5 1.1E-07 2.5E-12 85.2 5.9 47 2-48 61-107 (107)
14 cd05497 Bromo_Brdt_I_like Brom 98.5 1.2E-07 2.6E-12 85.3 5.9 47 2-48 61-107 (107)
15 cd05501 Bromo_SP100C_like Brom 98.5 1.4E-07 3.1E-12 85.1 6.1 46 2-48 54-99 (102)
16 cd05502 Bromo_tif1_like Bromod 98.5 1.9E-07 4.2E-12 83.5 6.2 47 2-48 60-106 (109)
17 cd05520 Bromo_polybromo_III Br 98.5 2.1E-07 4.6E-12 83.2 5.5 43 2-44 60-102 (103)
18 smart00297 BROMO bromo domain. 98.5 3E-07 6.4E-12 79.8 6.0 46 2-47 61-106 (107)
19 cd05503 Bromo_BAZ2A_B_like Bro 98.4 3.5E-07 7.7E-12 80.5 5.5 43 2-44 54-96 (97)
20 cd05519 Bromo_SNF2 Bromodomain 98.4 3.1E-07 6.6E-12 81.5 5.1 44 2-45 60-103 (103)
21 cd05498 Bromo_Brdt_II_like Bro 98.4 3.6E-07 7.8E-12 80.4 5.2 43 2-44 59-101 (102)
22 cd05505 Bromo_WSTF_like Bromod 98.4 3.7E-07 8E-12 81.0 5.2 43 2-44 54-96 (97)
23 cd05529 Bromo_WDR9_I_like Brom 98.4 4E-07 8.8E-12 84.2 5.6 46 2-47 82-127 (128)
24 cd05499 Bromo_BDF1_2_II Bromod 98.4 4.3E-07 9.4E-12 80.2 5.2 43 2-44 59-101 (102)
25 cd05515 Bromo_polybromo_V Brom 98.4 5.4E-07 1.2E-11 80.6 5.7 44 2-45 60-103 (105)
26 cd05500 Bromo_BDF1_2_I Bromodo 98.4 5E-07 1.1E-11 80.2 5.2 43 2-44 60-102 (103)
27 cd05528 Bromo_AAA Bromodomain; 98.4 6.5E-07 1.4E-11 81.4 5.9 47 2-48 57-107 (112)
28 cd05521 Bromo_Rsc1_2_I Bromodo 98.4 6.2E-07 1.3E-11 80.9 5.6 43 3-45 60-102 (106)
29 cd05518 Bromo_polybromo_IV Bro 98.4 5.5E-07 1.2E-11 80.7 5.3 42 2-43 60-101 (103)
30 cd04369 Bromodomain Bromodomai 98.4 6.2E-07 1.3E-11 74.5 5.2 43 2-44 56-98 (99)
31 cd05506 Bromo_plant1 Bromodoma 98.4 6.6E-07 1.4E-11 78.2 5.6 43 2-44 56-98 (99)
32 PF00439 Bromodomain: Bromodom 98.3 7.5E-07 1.6E-11 74.2 4.5 35 2-36 50-84 (84)
33 cd05525 Bromo_ASH1 Bromodomain 98.3 1.1E-06 2.3E-11 79.3 5.5 41 2-42 62-102 (106)
34 cd05517 Bromo_polybromo_II Bro 98.3 1.1E-06 2.3E-11 78.8 5.3 41 2-42 60-100 (103)
35 cd05526 Bromo_polybromo_VI Bro 98.3 1.6E-06 3.4E-11 79.6 6.2 49 2-50 61-109 (110)
36 cd05496 Bromo_WDR9_II Bromodom 98.3 1.7E-06 3.7E-11 79.7 6.2 52 2-53 59-111 (119)
37 cd05522 Bromo_Rsc1_2_II Bromod 98.2 2E-06 4.3E-11 77.0 5.4 42 2-43 61-102 (104)
38 KOG1474 Transcription initiati 98.0 6.2E-06 1.3E-10 93.7 6.4 57 2-58 278-334 (640)
39 COG5076 Transcription factor i 97.7 4.2E-05 9.1E-10 81.2 5.1 51 1-51 201-251 (371)
40 cd05491 Bromo_TBP7_like Bromod 97.1 0.00028 6E-09 66.0 2.4 29 2-30 78-106 (119)
41 KOG1828 IRF-2-binding protein 97.0 0.00028 6E-09 76.6 2.1 36 3-39 263-298 (418)
42 KOG1828 IRF-2-binding protein 93.7 0.012 2.7E-07 64.2 -1.3 39 2-40 73-111 (418)
43 KOG1827 Chromatin remodeling c 93.1 0.081 1.7E-06 61.1 3.9 42 2-43 112-153 (629)
44 KOG1472 Histone acetyltransfer 91.8 0.081 1.8E-06 61.9 1.8 47 2-48 660-706 (720)
45 KOG0008 Transcription initiati 90.4 0.21 4.6E-06 61.7 3.4 44 2-45 1436-1479(1563)
46 PF12024 DUF3512: Domain of un 89.7 0.35 7.6E-06 50.5 3.9 76 169-244 96-182 (245)
47 KOG0386 Chromatin remodeling c 75.8 2.7 5.9E-05 51.4 4.0 50 1-50 1083-1132(1157)
48 KOG1472 Histone acetyltransfer 48.9 12 0.00026 44.6 2.6 32 2-33 340-371 (720)
49 KOG0008 Transcription initiati 41.4 25 0.00054 44.8 3.7 44 2-45 1315-1358(1563)
No 1
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.61 E-value=3e-16 Score=182.27 Aligned_cols=239 Identities=19% Similarity=0.127 Sum_probs=150.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhhhhHHHHHhhhhccCCC
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE-KELKPEKELNLEKELRLEKDLKSE 80 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E-~e~k~~~~~~~~~~~~~e~~~k~~ 80 (669)
.|.+||+||+||+|||+|||.||+.||||||+|.+++|++.++|.+.+.+.+..+ .+.. ..+-.+....
T Consensus 619 ~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~----------~~~~~~~~~~ 688 (1051)
T KOG0955|consen 619 AYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRE----------SLSHHDHLVK 688 (1051)
T ss_pred chhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchh----------hhcccchhhh
Confidence 5999999999999999999999999999999999999999999999999987655 2111 0000011111
Q ss_pred CCCCCchhhhhhccCCCCCCCCCcCCCCCCCCcccccccCCCCCCccccCCCCCCCCcccccc-cCCCC----ccccccc
Q 005930 81 PKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIV-DGNSS----LADNNLE 155 (669)
Q Consensus 81 ~k~r~~~~~kk~~Kk~~~r~~~E~~GSdfSsgATLAt~gd~~n~~~~~~~~g~~r~~~~d~~~-~~nss----~~d~~~E 155 (669)
...++. .+..+.+..+-.....-++++...-++..-+-..--...... .. .+-++.+ ....+ |.+.-.|
T Consensus 689 ~~~~~~---~~~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~-~~--~~~~~~~~~~~~s~~r~~~~~~~e 762 (1051)
T KOG0955|consen 689 KLERPY---RPNLWAPEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLS-IP--RNRDSRIIRKEKSRLRKCGIVDTE 762 (1051)
T ss_pred hhccCC---ccccccccccccccccccccChhhhhccccccchhhhhhhcc-cc--cccccccchhhHHHHhhccCcCcc
Confidence 111221 123344444444444445555433222222211000000000 00 0111111 00000 1110111
Q ss_pred c--hhhhh-ccccccccCCCCCCCcCccccccCCCCCCCCcCCCCceecccCccceeEEeccccchhhHHHHHHHHHhhC
Q 005930 156 K--VEELS-SAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLG 232 (669)
Q Consensus 156 k--~~dv~-sgkg~~sK~GkKp~~vDE~RRsTYk~s~qp~~~s~sIfstf~~E~KqLVpVGlq~EhsYARSLARFAAdLG 232 (669)
. ..+.. ++..-+.|+|.+. .+++.+|.+- ...-.++++++.+.++.|++-|++|..+.+|+||+++.+++++
T Consensus 763 ~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~-~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t 837 (1051)
T KOG0955|consen 763 TSGSPSIPSGGEKTVKKDGLNS----KNLKMSSDQA-LSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPT 837 (1051)
T ss_pred ccCCCCCCCccccchhcccccc----cccccccchh-hcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCC
Confidence 1 00111 1122245777664 8899999742 2223689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCCccCCccccCC
Q 005930 233 PVAWKVASRRIEQALPAGCKFGRGWVGEY 261 (669)
Q Consensus 233 PvaW~IAskRIer~LPpg~kFGpGWVGE~ 261 (669)
++||.+|+.+++..++.+..||.||+++.
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~t 866 (1051)
T KOG0955|consen 838 ASANNLASTSCSVTKATFTGNGVGGDVKT 866 (1051)
T ss_pred cccccccccccccccCCccCCCCCccccC
Confidence 99999999999999999999999994443
No 2
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.86 E-value=2.3e-09 Score=95.28 Aligned_cols=43 Identities=37% Similarity=0.484 Sum_probs=41.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.|+++|++||.|||+||+.||.+||.+|++|..|++.++++
T Consensus 55 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~ 97 (98)
T cd05513 55 DYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGMKI 97 (98)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhh
Confidence 5999999999999999999999999999999999999999875
No 3
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.82 E-value=2.8e-09 Score=94.38 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=41.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.|+++|++||.|||.||+.||.+||.+|+.|.+|+++++.+
T Consensus 55 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~~~~ 97 (98)
T cd05512 55 RYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQGGAI 97 (98)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhccc
Confidence 5999999999999999999999999999999999999998764
No 4
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.66 E-value=3.5e-08 Score=87.99 Aligned_cols=47 Identities=26% Similarity=0.267 Sum_probs=44.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.|+++|.+|+.|||.||+.||.+|+.+|+.|..|++.+.+.++.+
T Consensus 57 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 57 TIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999999999999888764
No 5
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.65 E-value=3.2e-08 Score=89.50 Aligned_cols=53 Identities=32% Similarity=0.476 Sum_probs=49.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIER 54 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~ 54 (669)
.|.++++|+.|+.|||.||+.||.+++.+|+.|+.|+.++.+.++.+..+...
T Consensus 54 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 54 KYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 59999999999999999999999999999999999999999999998776643
No 6
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.65 E-value=4.4e-08 Score=89.13 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=46.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.|+++|++|+.|||.||+.||.+|+.+|+.|..|..++.++++.|..
T Consensus 66 ~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~~ 114 (115)
T cd05504 66 EYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLGL 114 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999999999999999999999999999999999998863
No 7
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.62 E-value=5.7e-08 Score=85.32 Aligned_cols=47 Identities=32% Similarity=0.439 Sum_probs=44.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.|+++|++|+.|||.||+.||.+++.+|+.|..|+..+++.++.|
T Consensus 55 ~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 55 YYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999999999999999988764
No 8
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.61 E-value=6.7e-08 Score=87.99 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=45.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|++++||+.||.|||.||+.||.+||++|.+|+.|..-+...+.-|+
T Consensus 60 ~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 60 KYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999998888887765
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.60 E-value=5.3e-08 Score=86.83 Aligned_cols=43 Identities=30% Similarity=0.335 Sum_probs=40.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.++++|.+|+.|||+||+.||.+|+.+|..|+.|.+.|...
T Consensus 56 ~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 56 AYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999988764
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.59 E-value=7.4e-08 Score=87.59 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=44.3
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCC-chHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPD-TVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~D-TIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.|+++|.+|+.|||.||+.||.++ ++||+.|..|++.+.+.+..|.
T Consensus 62 ~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 62 QYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 69999999999999999999999975 5899999999999999998773
No 11
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.57 E-value=1e-07 Score=85.72 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=45.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|.+|+.|||+||+.||.+|+.+|+.|..|+..+.+.++.+
T Consensus 60 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 60 QYQDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999988765
No 12
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.56 E-value=1e-07 Score=86.47 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=44.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.|+++|+.||.|||+||+.||.+|+..|+.|..|++.+.+.+..+-
T Consensus 62 ~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 62 EYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999999999999888777654
No 13
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.55 E-value=1.1e-07 Score=85.25 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=44.3
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|+.||.|||.||+.||.+++..|+.|..|+.++...++++
T Consensus 61 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 61 KYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999999999999999999998887764
No 14
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.54 E-value=1.2e-07 Score=85.30 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=44.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|.+|+.|||.||+.||.+++.+|+.|..|...+.+++..+
T Consensus 61 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 61 YYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999888753
No 15
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.53 E-value=1.4e-07 Score=85.06 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=43.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.|+++|.+||.|||+||+.||.+| .+|+.|..|...+.+.+..+
T Consensus 54 ~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 54 VYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999 99999999999998888754
No 16
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.50 E-value=1.9e-07 Score=83.53 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=45.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|+++++|.+|+.||+.||+.||.+++.+|+.|..|+..+++.+..+
T Consensus 60 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 60 HYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998765
No 17
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.47 E-value=2.1e-07 Score=83.23 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=40.5
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|+++++|+.||.|||+||+.||.+++.+|+.|..|+.+++.+
T Consensus 60 ~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 60 EYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999987653
No 18
>smart00297 BROMO bromo domain.
Probab=98.46 E-value=3e-07 Score=79.82 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=43.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHR 47 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~ 47 (669)
.|.++++|++|+.||+.||+.||.+|+.+|+.|..|.+.+.+.++.
T Consensus 61 ~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 61 KYSSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999999999999999999999998887764
No 19
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.42 E-value=3.5e-07 Score=80.47 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=40.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|+|+++|.+|+.||+.||+.||.+|+.+|+.|..|++.++.+
T Consensus 54 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~ 96 (97)
T cd05503 54 QYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKR 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999987764
No 20
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.41 E-value=3.1e-07 Score=81.53 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=41.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~f 45 (669)
.|.|+++|++|+.|||+||+.||.+|+.+|+.|+.|+..++.+|
T Consensus 60 ~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 60 AYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999999887764
No 21
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.40 E-value=3.6e-07 Score=80.43 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=41.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.|+++|+.|+.|||.||+.||.+++..|+.|+.|++.+.++
T Consensus 59 ~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 59 EYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999988765
No 22
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.40 E-value=3.7e-07 Score=81.02 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=40.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.|+++|.+|+.|||.||+.||.+++..|+.|.+|.+.+...
T Consensus 54 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 54 SYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999988754
No 23
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.39 E-value=4e-07 Score=84.25 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=43.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHR 47 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~ 47 (669)
.|+++++|+.||.|||.||+.||.+++.+|+.|+.|...+.+.+..
T Consensus 82 ~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 82 YYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999988887653
No 24
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.38 E-value=4.3e-07 Score=80.19 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=41.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|+++++|+.|+.||+.||+.||.+++..|+.|..|+.++.++
T Consensus 59 ~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~~ 101 (102)
T cd05499 59 QYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDK 101 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999988765
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.37 E-value=5.4e-07 Score=80.57 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=41.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~f 45 (669)
.|.|+++|+.||.|||+||+.||.+++..|+.|..|+.++.+..
T Consensus 60 ~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 60 QYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999876654
No 26
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.36 E-value=5e-07 Score=80.15 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=40.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.++++|..|+.|||.||+.||.+++.+|..|+.|+..+.+.
T Consensus 60 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 60 VYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999887764
No 27
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=98.36 E-value=6.5e-07 Score=81.40 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=43.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCc----hHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDT----VYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DT----IyyraA~~l~e~akk~fe~L 48 (669)
.|.|+++|++|+.|||+||+.||.++| ..|..|..|++.++++++.+
T Consensus 57 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 57 QYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 599999999999999999999999974 88999999999999988764
No 28
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.35 E-value=6.2e-07 Score=80.94 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=40.5
Q ss_pred cccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH
Q 005930 3 AISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45 (669)
Q Consensus 3 Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~f 45 (669)
|.++++|++|+.|||+||+.||.+++..|+.|..|...+..++
T Consensus 60 Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 60 YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998877654
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.35 E-value=5.5e-07 Score=80.69 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=39.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKK 43 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk 43 (669)
.|.|+++|++|+.|||.||+.||.+++.+|+.|..|..+.+.
T Consensus 60 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 60 KYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999999999999999999877653
No 30
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.35 E-value=6.2e-07 Score=74.49 Aligned_cols=43 Identities=33% Similarity=0.334 Sum_probs=40.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.++++|++|+.|||.||+.||..++.+|+.|..|...+...
T Consensus 56 ~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 56 EYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999887654
No 31
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.35 E-value=6.6e-07 Score=78.25 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=40.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 44 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~ 44 (669)
.|.++++|++|+.||+.||+.||.+++..|+.|..|+..+.++
T Consensus 56 ~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 56 EYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETR 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999877653
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=98.30 E-value=7.5e-07 Score=74.21 Aligned_cols=35 Identities=37% Similarity=0.334 Sum_probs=33.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARA 36 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~ 36 (669)
.|.++++|++||.+||.||+.||.++++.|+.|++
T Consensus 50 ~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 50 KYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 69999999999999999999999999999999974
No 33
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.28 E-value=1.1e-06 Score=79.34 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=39.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAK 42 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~ak 42 (669)
.|.++++|+.|+.|||.||+.||.+|+..|+.|..|++++.
T Consensus 62 ~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~ 102 (106)
T cd05525 62 YYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYY 102 (106)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998754
No 34
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.27 E-value=1.1e-06 Score=78.77 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=38.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAK 42 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~ak 42 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|..|+.++.
T Consensus 60 ~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~ 100 (103)
T cd05517 60 YYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFT 100 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999988654
No 35
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.27 E-value=1.6e-06 Score=79.57 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=45.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.+|++|.+|++|||.||+.||..|+..|.-|..|+.++.+.-+.|..
T Consensus 61 ~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~~~ 109 (110)
T cd05526 61 RYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDELCK 109 (110)
T ss_pred CcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999999998887776653
No 36
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.25 E-value=1.7e-06 Score=79.68 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=47.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHhhcccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAP-DTVYHKQARAIQELAKKKFHRLRAGIE 53 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~-DTIyyraA~~l~e~akk~fe~Lr~d~~ 53 (669)
.|.++++|.+|+.|||.||+.||.+ ++..|..|..|...+.+.+..|..+..
T Consensus 59 ~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 59 NYDDPMEFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999984 899999999999999999999876653
No 37
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.20 E-value=2e-06 Score=76.96 Aligned_cols=42 Identities=29% Similarity=0.216 Sum_probs=39.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKK 43 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk 43 (669)
.|.++++|++|+.|||.||+.||.+|+..|..|..|+..+.+
T Consensus 61 ~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 61 KYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999887765
No 38
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.03 E-value=6.2e-06 Score=93.75 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=52.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKE 58 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~e 58 (669)
.|.+.++|.+||.|||+|||.||..+...|..|+.|++.+..++..+....+..+..
T Consensus 278 ~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~ 334 (640)
T KOG1474|consen 278 EYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESA 334 (640)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 599999999999999999999999999999999999999999999988777655543
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.69 E-value=4.2e-05 Score=81.24 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=46.4
Q ss_pred CccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 005930 1 MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 51 (669)
Q Consensus 1 ~~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d 51 (669)
..|+++++|..||+|||+||..||.+|..-|+-|..|...+.+.+..+-..
T Consensus 201 ~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 201 GRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 369999999999999999999999999999999999999998888766543
No 40
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.10 E-value=0.00028 Score=66.03 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=27.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVY 30 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIy 30 (669)
.|.+.++|.+|+.||++||..||.+|+++
T Consensus 78 ~Y~tp~~F~~DiklI~~Nc~~ynd~dr~~ 106 (119)
T cd05491 78 YYATPKDFLKDIKRIVRDAKTIGDRERLL 106 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 59999999999999999999999999875
No 41
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.04 E-value=0.00028 Score=76.59 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=34.6
Q ss_pred cccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHH
Q 005930 3 AISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQE 39 (669)
Q Consensus 3 Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e 39 (669)
|.| -+|+.||+|||.|||+||-++|+||..|.+++|
T Consensus 263 y~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 263 YES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 777 799999999999999999999999999999999
No 42
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=93.72 E-value=0.012 Score=64.24 Aligned_cols=39 Identities=23% Similarity=0.025 Sum_probs=36.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQEL 40 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~ 40 (669)
.|.+|-+|+.|++|||+||..||..+|+||.+|++|.-.
T Consensus 73 ~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v 111 (418)
T KOG1828|consen 73 RYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPV 111 (418)
T ss_pred cceechhhhhhhcccccchhhhhcCCccccccccccchh
Confidence 588999999999999999999999999999999998874
No 43
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=93.13 E-value=0.081 Score=61.12 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=38.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKK 43 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk 43 (669)
.|.+++.|+.||+||++||..||.+|.-+|+.|..|...+-.
T Consensus 112 ~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~ 153 (629)
T KOG1827|consen 112 RYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFIS 153 (629)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhh
Confidence 699999999999999999999999999999999998886544
No 44
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=91.85 E-value=0.081 Score=61.90 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=42.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|..++.|..|+..|++||..||..||.||+.|-.+-..+-.++..+
T Consensus 660 ~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 660 QYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred chhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhh
Confidence 59999999999999999999999999999999999888766665544
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=90.38 E-value=0.21 Score=61.67 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=41.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~f 45 (669)
.|.++++|..|++|||.||..||..++.|-+.|++|.+.|...+
T Consensus 1436 ~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1436 KYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred ccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999876554
No 46
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=89.69 E-value=0.35 Score=50.50 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=62.6
Q ss_pred cCCCCCC-CcCcccccc--------CCCCCCCCcCCCCceecccCccceeEEeccccchh--hHHHHHHHHHhhChhHHH
Q 005930 169 KLGRKPA-VPDENRRAT--------YSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYS--YARSLARFAATLGPVAWK 237 (669)
Q Consensus 169 K~GkKp~-~vDE~RRsT--------Yk~s~qp~~~s~sIfstf~~E~KqLVpVGlq~Ehs--YARSLARFAAdLGPvaW~ 237 (669)
..|-..+ ..-|+||+- |-|.+..+-.-+|.|+++..|--.||.-.|..|.+ ||.||.+|+++-|-++..
T Consensus 96 ~~G~~tL~gfkEdrrnkvtpv~yl~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~~~~~y~~~ 175 (245)
T PF12024_consen 96 QSGTNTLQGFKEDRRNKVTPVSYLNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVKDCGSYAYK 175 (245)
T ss_pred cCCcccccccchhhccceeeecccccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhhcCchHHHH
Confidence 3444444 566999983 44555566688999999999999999999888887 999999999999999999
Q ss_pred HHHHHHH
Q 005930 238 VASRRIE 244 (669)
Q Consensus 238 IAskRIe 244 (669)
||...|.
T Consensus 176 ~vd~LLD 182 (245)
T PF12024_consen 176 MVDDLLD 182 (245)
T ss_pred HHhhhhh
Confidence 9999987
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=75.84 E-value=2.7 Score=51.40 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=44.9
Q ss_pred CccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 1 MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 1 ~~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
+.|.++++.+.||.++|.||..||..+..-|.-|..|+.........|-.
T Consensus 1083 ~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1083 HKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhhHHHHhc
Confidence 47999999999999999999999999999999999999877776666655
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=48.93 E-value=12 Score=44.64 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQ 33 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyra 33 (669)
.|.+.++|++|+.+||.||..||.-.-.|-+.
T Consensus 340 ~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~ 371 (720)
T KOG1472|consen 340 PYCSKEEFVNDLMLIWRNCEKYNSEESHGLIE 371 (720)
T ss_pred cccchhHHHHHHHHHHhcchhhccccchhhhh
Confidence 59999999999999999999999987666444
No 49
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=41.45 E-value=25 Score=44.78 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=39.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~f 45 (669)
.|.+-|.|.+|..||.+|..+||.+-.+|-++|..++.++-..+
T Consensus 1315 ~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1315 LYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred HHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhh
Confidence 58888999999999999999999999999999999998765443
Done!