Query 005930
Match_columns 669
No_of_seqs 128 out of 156
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 11:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9e_A Peregrin; four-helix bu 98.9 1.5E-09 5E-14 97.5 6.0 53 2-54 61-113 (121)
2 3rcw_A Bromodomain-containing 98.9 1.3E-09 4.5E-14 98.9 5.1 56 2-57 67-122 (135)
3 2grc_A Probable global transcr 98.9 2.4E-09 8E-14 97.0 6.1 55 2-56 72-126 (129)
4 2yyn_A Transcription intermedi 98.8 7.6E-09 2.6E-13 94.4 6.8 56 2-57 75-130 (135)
5 3d7c_A General control of amin 98.8 8.7E-09 3E-13 90.8 6.5 49 2-50 61-109 (112)
6 2i7k_A Bromodomain-containing 98.8 9E-09 3.1E-13 92.2 6.7 51 2-52 62-112 (117)
7 3jvl_A Bromodomain-containing 98.8 7.2E-09 2.5E-13 92.2 5.7 51 2-52 68-118 (120)
8 2dat_A Possible global transcr 98.7 8.3E-09 2.8E-13 92.6 5.9 48 2-49 73-120 (123)
9 3hme_A Bromodomain-containing 98.7 6.6E-09 2.3E-13 93.4 5.2 50 2-51 67-116 (123)
10 3iu5_A Protein polybromo-1; PB 98.7 1E-08 3.6E-13 90.8 6.4 49 2-50 65-113 (116)
11 3mb4_A Protein polybromo-1; PB 98.7 1.1E-08 3.7E-13 91.8 6.6 49 2-50 75-123 (124)
12 3g0l_A Hwalp4, bromodomain adj 98.7 1.1E-08 3.8E-13 90.6 6.4 48 2-49 67-114 (117)
13 4alg_A Bromodomain-containing 98.7 9.5E-09 3.3E-13 95.9 6.2 51 2-52 88-138 (154)
14 3ljw_A Protein polybromo-1; al 98.7 1.3E-08 4.4E-13 90.9 6.4 48 2-49 68-115 (120)
15 3p1f_A CREB-binding protein; s 98.7 1.6E-08 5.4E-13 89.9 6.4 49 2-50 68-116 (119)
16 2ouo_A HUNK1 protein, bromodom 98.7 1.5E-08 5.2E-13 91.9 6.1 48 2-49 81-128 (130)
17 2oss_A HUNK1 protein, bromodom 98.7 1.5E-08 5.1E-13 91.7 5.8 49 2-50 77-125 (127)
18 1e6i_A Transcriptional activat 98.7 1.7E-08 5.7E-13 90.5 6.1 48 2-49 67-114 (121)
19 3tlp_A Protein polybromo-1; PB 98.7 1.9E-08 6.6E-13 92.7 6.6 55 2-56 85-139 (150)
20 3k2j_A Protein polybromo-1; PB 98.7 1.9E-08 6.3E-13 91.6 6.1 50 2-51 77-126 (130)
21 3uv4_A Second bromodomain of h 98.7 8.9E-09 3E-13 96.7 4.1 56 2-57 84-139 (158)
22 3mqm_A Probable histone-lysine 98.7 1.4E-08 4.6E-13 91.3 5.0 52 2-53 69-120 (126)
23 3nxb_A CAT eye syndrome critic 98.7 1.8E-08 6E-13 89.2 5.5 46 2-47 70-115 (116)
24 3fkm_X Signaling protein; brom 98.6 2.8E-08 9.4E-13 93.8 6.2 51 2-52 77-127 (166)
25 3mb3_A PH-interacting protein; 98.6 4.7E-08 1.6E-12 88.7 6.4 51 2-52 75-126 (135)
26 3q2e_A Bromodomain and WD repe 98.6 6.8E-08 2.3E-12 86.5 5.9 51 2-52 64-115 (123)
27 3aad_A Transcription initiatio 98.5 7.5E-08 2.6E-12 97.7 4.9 59 2-60 224-282 (292)
28 3uv5_A Transcription initiatio 98.5 1.4E-07 4.6E-12 94.3 6.2 58 2-59 191-248 (265)
29 2ro1_A Transcription intermedi 98.5 1.2E-07 4.3E-12 90.9 5.4 51 2-53 131-181 (189)
30 2r10_A Chromatin structure-rem 98.3 7.2E-07 2.5E-11 93.1 6.4 47 2-48 267-313 (361)
31 2r0y_A Chromatin structure-rem 98.3 8E-07 2.7E-11 91.3 6.4 47 2-48 217-263 (311)
32 3uv5_A Transcription initiatio 98.2 5.3E-07 1.8E-11 90.0 4.5 51 2-52 68-118 (265)
33 3dai_A ATPase family AAA domai 98.2 1.4E-06 4.7E-11 78.9 6.2 45 2-46 64-112 (130)
34 2dkw_A Hypothetical protein KI 98.2 1.7E-06 5.9E-11 79.0 5.9 48 2-49 61-113 (131)
35 2r0y_A Chromatin structure-rem 98.2 1.7E-06 5.7E-11 89.0 6.1 46 3-48 83-129 (311)
36 2r10_A Chromatin structure-rem 98.1 2.2E-06 7.4E-11 89.5 6.0 44 5-48 136-179 (361)
37 3iu6_A Protein polybromo-1; PB 98.1 4.1E-06 1.4E-10 78.9 6.1 52 2-53 63-114 (147)
38 3aad_A Transcription initiatio 98.0 2.1E-06 7.2E-11 87.2 2.5 47 2-48 101-147 (292)
39 3u5n_A E3 ubiquitin-protein li 97.6 1E-05 3.6E-10 77.9 0.0 38 2-39 137-174 (207)
40 3lqh_A Histone-lysine N-methyl 97.0 0.00068 2.3E-08 65.5 6.1 56 2-57 118-173 (183)
41 1dum_A Magainin 2; antibiotic, 33.9 2.3 7.8E-05 29.5 -2.8 17 247-263 6-22 (26)
No 1
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=97.53 Aligned_cols=53 Identities=25% Similarity=0.346 Sum_probs=49.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIER 54 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~ 54 (669)
.|.++++|++||.|||+||+.||.+|+.+|+.|..|++.+.+.++.++...+.
T Consensus 61 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 61 RYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999888876543
No 2
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=98.87 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=51.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEK 57 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~ 57 (669)
.|.++++|++||.|||.||+.||.+|+.+|+.|..|.+.+.+.++.++.+.+..+.
T Consensus 67 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 122 (135)
T 3rcw_A 67 GYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 122 (135)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 59999999999999999999999999999999999999999999999887765443
No 3
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.85 E-value=2.4e-09 Score=97.00 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=49.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE 56 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E 56 (669)
.|.++++|.+||.|||.||+.||.+++.+|+.|..|..++.+.+..|..+.+..+
T Consensus 72 ~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 72 KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 5999999999999999999999999999999999999999999999987775444
No 4
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=98.77 E-value=7.6e-09 Score=94.44 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=49.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEK 57 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~ 57 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|..|.+.+.+.+..|--+.+--++
T Consensus 75 ~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~p~~ 130 (135)
T 2yyn_A 75 MYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPKS 130 (135)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 59999999999999999999999999999999999999999999988766654333
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.76 E-value=8.7e-09 Score=90.82 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=46.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|..|.+.+.+.+..++.
T Consensus 61 ~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 61 YYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 5999999999999999999999999999999999999999999988764
No 6
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=98.76 E-value=9e-09 Score=92.19 Aligned_cols=51 Identities=31% Similarity=0.387 Sum_probs=47.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|..||.|||+||+.||.+++.+|+.|+.|++.+.+.+..+-.++
T Consensus 62 ~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 62 DYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999998876654
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=98.75 E-value=7.2e-09 Score=92.19 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=47.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|.+||.|||.||+.||.+++.+|+.|+.|.+.+.+.+..|..+.
T Consensus 68 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 68 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 599999999999999999999999999999999999999999999887543
No 8
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=8.3e-09 Score=92.60 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=44.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|..|.+++.+.++.+-
T Consensus 73 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 73 KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999999888887653
No 9
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=98.74 E-value=6.6e-09 Score=93.38 Aligned_cols=50 Identities=38% Similarity=0.419 Sum_probs=46.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 51 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d 51 (669)
.|.++++|+.||.|||.||+.||.+|+.+|+.|..|.+.+.+.+...+..
T Consensus 67 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (123)
T 3hme_A 67 EYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKERLL 116 (123)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999998876654
No 10
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=90.83 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=46.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|..|++++.+.++.|-.
T Consensus 65 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 65 EYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999988754
No 11
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.74 E-value=1.1e-08 Score=91.80 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=46.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|..|..++.+.++.|..
T Consensus 75 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 75 KYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999999999999988754
No 12
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=98.74 E-value=1.1e-08 Score=90.60 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=45.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.++++|++||.|||.||+.||.+++.+|+.|..|.+.+.+.+..|-
T Consensus 67 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 67 QYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999988764
No 13
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=98.74 E-value=9.5e-09 Score=95.91 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=48.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|+.|.+.+.+.+..|..+.
T Consensus 88 ~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 88 YYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 599999999999999999999999999999999999999999999887544
No 14
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.72 E-value=1.3e-08 Score=90.89 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=45.7
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|+.|++.+.+.+..|.
T Consensus 68 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 68 SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999999999999999999999999988764
No 15
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=98.71 E-value=1.6e-08 Score=89.88 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=46.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|+.|.+.+.+.++.+-.
T Consensus 68 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 68 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999998887754
No 16
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=98.69 E-value=1.5e-08 Score=91.93 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=45.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.++++|.+||.|||+||+.||.+++.+|+.|..|++.+.+.+..|.
T Consensus 81 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 81 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 599999999999999999999999999999999999999999998775
No 17
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=98.69 E-value=1.5e-08 Score=91.65 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=46.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|.+||.|||+||+.||.+++.+|+.|..|.+.+.+.+..|..
T Consensus 77 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 77 YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 5999999999999999999999999999999999999999999887753
No 18
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=98.69 E-value=1.7e-08 Score=90.53 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=45.8
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|..|...+.+.+..|.
T Consensus 67 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 67 KYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 599999999999999999999999999999999999999999998873
No 19
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=92.69 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=48.3
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE 56 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E 56 (669)
.|.++++|++||.|||.||+.||.+++.+|+.|+.|..++.+.+..|...++..+
T Consensus 85 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~ 139 (150)
T 3tlp_A 85 KYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDD 139 (150)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhh
Confidence 5999999999999999999999999999999999999999999999987665443
No 20
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=91.63 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=47.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 51 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d 51 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|+.|.+.+.+.++.|...
T Consensus 77 ~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 77 EYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999999888643
No 21
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=98.68 E-value=8.9e-09 Score=96.70 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=51.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEK 57 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~ 57 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|..|.+.+.+.+..+.......|.
T Consensus 84 ~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~ 139 (158)
T 3uv4_A 84 KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEK 139 (158)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999877755444
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=91.27 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIE 53 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~ 53 (669)
.|.++++|.+||.|||.||+.||.+++.+|+.|..|.+.+.+.+..+....+
T Consensus 69 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 69 YYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999988888765543
No 23
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=98.67 E-value=1.8e-08 Score=89.23 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=43.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHR 47 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~ 47 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|..|.+.+.+.+.+
T Consensus 70 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 70 LYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999999999999999999999999888763
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=98.64 E-value=2.8e-08 Score=93.82 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=48.5
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|+.|.+.+.+.+..+..+.
T Consensus 77 ~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~~ 127 (166)
T 3fkm_X 77 QYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNN 127 (166)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccccc
Confidence 599999999999999999999999999999999999999999999988655
No 25
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=98.60 E-value=4.7e-08 Score=88.73 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=47.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAP-DTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~-DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|++||.|||.||+.||.+ ++.+|+.|..|.+.+.+.+..+-.+.
T Consensus 75 ~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 75 NYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999997 89999999999999999998875544
No 26
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=98.55 E-value=6.8e-08 Score=86.54 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=47.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAP-DTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~-DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|..||.|||.||+.||.+ ++.+|+.|..|.+.+.+.+..|..+.
T Consensus 64 ~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 64 NYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999995 99999999999999999999887655
No 27
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.48 E-value=7.5e-08 Score=97.73 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=53.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELK 60 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~e~k 60 (669)
.|.++++|.+||.|||+||+.||.+++.+|+.|..|.+.+.+.+..+.......|.+..
T Consensus 224 ~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~l~~le~~i~ 282 (292)
T 3aad_A 224 KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDIC 282 (292)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999998877765565544
No 28
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.47 E-value=1.4e-07 Score=94.30 Aligned_cols=58 Identities=28% Similarity=0.441 Sum_probs=53.2
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKEL 59 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~e~ 59 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|..|...+.+.+..+.......|.+.
T Consensus 191 ~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e~~i 248 (265)
T 3uv5_A 191 KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 248 (265)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999988776555543
No 29
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=90.92 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=46.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIE 53 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~ 53 (669)
.|.++++|.+||.||++||++|| +|+.+|++|+.|.+.+.+.+..+-.+..
T Consensus 131 ~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 131 PYSSPQEFAQDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 69999999999999999999999 6888889999999999999998876543
No 30
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.27 E-value=7.2e-07 Score=93.05 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=44.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|..|.+.+.+.+..+
T Consensus 267 ~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 267 QYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999988774
No 31
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.27 E-value=8e-07 Score=91.34 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=44.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|++||.|||+||+.||.+++.+|+.|+.|.+.+.+.+..+
T Consensus 217 ~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 217 QYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999988774
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.25 E-value=5.3e-07 Score=90.04 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=47.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.++++|+.||.|||.||+.||.+++.+|+.|..|.+.+.+.+..+....
T Consensus 68 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 68 LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999999999999999999999999999888775433
No 33
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=98.22 E-value=1.4e-06 Score=78.89 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=40.6
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCc----hHHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDT----VYHKQARAIQELAKKKFH 46 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DT----IyyraA~~l~e~akk~fe 46 (669)
.|.++++|..||.|||.||+.||.+++ +.|..|..|++.+...+.
T Consensus 64 ~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 64 KYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999987 558888999998888775
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.7e-06 Score=78.97 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=40.3
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchH----HHHHHHHHHHHHHHH-HHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVY----HKQARAIQELAKKKF-HRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIy----yraA~~l~e~akk~f-e~Lr 49 (669)
.|.++++|.+||.|||.||+.||.+++.+ |..|..|++.+...+ ..|.
T Consensus 61 ~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 61 NYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999843 567788888877766 3443
No 35
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.16 E-value=1.7e-06 Score=88.96 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=42.5
Q ss_pred cc-cHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 3 AI-SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 3 Y~-SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
|. ++++|+.||.|||+||+.||.+++.+|++|..|++++.+.+.+.
T Consensus 83 y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 83 YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 44 89999999999999999999999999999999999998877654
No 36
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.12 E-value=2.2e-06 Score=89.51 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=41.3
Q ss_pred cHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 5 SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 5 SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
++++|+.||.|||+||+.||.+++.+|+.|..|++++.+.+.+.
T Consensus 136 ~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 136 GPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999988877654
No 37
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=98.06 E-value=4.1e-06 Score=78.93 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=49.5
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIE 53 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~ 53 (669)
.|++|++|+.||+|||.||+.||..|..-|..|..|+.++.+..+.|..+-+
T Consensus 63 ~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 63 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 6999999999999999999999999999999999999999999999987754
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.97 E-value=2.1e-06 Score=87.17 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=43.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 48 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~L 48 (669)
.|.++++|..||.|||.||+.||.+++.+|+.|+.|.+.+.+.+..+
T Consensus 101 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 101 LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 59999999999999999999999999999999999999877766554
No 39
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.57 E-value=1e-05 Score=77.94 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=29.0
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQE 39 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e 39 (669)
.|.++++|+.||.|||.||+.||.+++.+|..|..|..
T Consensus 137 ~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~ 174 (207)
T 3u5n_A 137 HYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEI 174 (207)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CcCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHh
Confidence 59999999999999999999999999999999887766
No 40
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.05 E-value=0.00068 Score=65.51 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=50.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEK 57 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~ 57 (669)
.|.|+++|..||.||+.||+.||..+.-..++..+|+....+.|+++=-.....++
T Consensus 118 ~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~ 173 (183)
T 3lqh_A 118 NYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKS 173 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCcccc
Confidence 59999999999999999999999999999999999999999999988766654443
No 41
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=33.92 E-value=2.3 Score=29.48 Aligned_cols=17 Identities=47% Similarity=0.900 Sum_probs=12.1
Q ss_pred cCCCCccCCccccCCCC
Q 005930 247 LPAGCKFGRGWVGEYEP 263 (669)
Q Consensus 247 LPpg~kFGpGWVGE~E~ 263 (669)
|-.--|||..||||-.+
T Consensus 6 lhsakkfgkawvgeimn 22 (26)
T 1dum_A 6 LHSAKKFGKAWVGEIMN 22 (26)
T ss_dssp TTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHh
Confidence 33445799999998654
Done!