Query 005930
Match_columns 669
No_of_seqs 128 out of 156
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 11:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dwya1 a.29.2.1 (A:1084-1197) 98.7 4.5E-09 3.2E-13 91.1 5.9 50 2-51 63-112 (114)
2 d3d7ca1 a.29.2.1 (A:731-832) G 98.7 9.5E-09 6.9E-13 87.5 6.4 45 2-46 56-100 (102)
3 d1eqfa1 a.29.2.1 (A:1359-1497) 98.7 6.2E-09 4.5E-13 93.3 5.0 52 2-53 80-131 (139)
4 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 98.7 1.4E-08 1E-12 87.6 6.6 48 2-49 57-104 (111)
5 d1wuma1 a.29.2.1 (A:715-832) P 98.6 1.4E-08 1E-12 88.6 5.5 49 2-50 67-115 (118)
6 d1eqfa2 a.29.2.1 (A:1498-1625) 98.6 1.1E-08 7.7E-13 90.7 4.8 51 2-52 64-114 (128)
7 d1p7ga2 d.44.1.1 (A:104-222) F 8.4 1.4E+02 0.01 24.6 3.9 45 205-253 65-117 (119)
8 d1wb8a2 d.44.1.1 (A:93-208) Fe 7.0 1.8E+02 0.013 23.8 3.9 39 205-247 70-116 (116)
9 d1tvia_ d.92.1.15 (A:) Hypothe 6.2 2.8E+02 0.02 23.7 4.8 42 14-60 79-120 (150)
10 d1nqka_ c.1.16.4 (A:) Alkanesu 6.2 88 0.0064 28.5 1.5 33 215-267 26-58 (362)
No 1
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.73 E-value=4.5e-09 Score=91.13 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=47.3
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 51 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d 51 (669)
.|.|+++|++||.|||.||+.||.+|+.+|+.|..|++.+++.++.|.++
T Consensus 63 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 112 (114)
T d3dwya1 63 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112 (114)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999887654
No 2
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.69 E-value=9.5e-09 Score=87.47 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=42.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFH 46 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe 46 (669)
.|.|+++|++||.|||.||+.||.+|+.+|+.|..|++.+.++++
T Consensus 56 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~f~~~~k 100 (102)
T d3d7ca1 56 YYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 100 (102)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999999999999999998877664
No 3
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.67 E-value=6.2e-09 Score=93.30 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=48.4
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIE 53 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~ 53 (669)
.|.|+++|.+||.|||.||+.||.+++.+|+.|..|.+.+...+..+.....
T Consensus 80 ~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 131 (139)
T d1eqfa1 80 LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLA 131 (139)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999988776553
No 4
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.66 E-value=1.4e-08 Score=87.58 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=45.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 49 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr 49 (669)
.|.|+++|++||.|||.||+.||.+|+.+|+.|..|...+.+.+..|.
T Consensus 57 ~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~ip 104 (111)
T d1e6ia_ 57 KYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP 104 (111)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999999999999999999999999998874
No 5
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.62 E-value=1.4e-08 Score=88.61 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=45.9
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 50 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~ 50 (669)
.|.++++|++||.|||.||+.||.+++.+|+.|..|.+++.+.++.+..
T Consensus 67 ~Y~s~~ef~~Dv~li~~Na~~yn~~~s~~~~~A~~l~~~f~~~~~e~~l 115 (118)
T d1wuma1 67 YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGL 115 (118)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 5999999999999999999999999999999999999999998877653
No 6
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.61 E-value=1.1e-08 Score=90.71 Aligned_cols=51 Identities=27% Similarity=0.426 Sum_probs=47.1
Q ss_pred ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccc
Q 005930 2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGI 52 (669)
Q Consensus 2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~ 52 (669)
.|.|+++|++||.|||.||+.||.+|+.+|+.|..|.+.+.+.+..+....
T Consensus 64 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~l~~~~~~~ 114 (128)
T d1eqfa2 64 KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 114 (128)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 599999999999999999999999999999999999999999988775433
No 7
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=8.35 E-value=1.4e+02 Score=24.63 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=33.6
Q ss_pred ccceeEEeccccchhh--------HHHHHHHHHhhChhHHHHHHHHHHhhcCCCCcc
Q 005930 205 ETKHLVAVGLHAEYSY--------ARSLARFAATLGPVAWKVASRRIEQALPAGCKF 253 (669)
Q Consensus 205 E~KqLVpVGlq~EhsY--------ARSLARFAAdLGPvaW~IAskRIer~LPpg~kF 253 (669)
....|+.+- -.||+| +.=|..|-. =+=|.+|.+|++++|...+.+
T Consensus 65 ~~~pll~lD-vWEHAYylDy~n~r~~Yi~~~~~---~inW~~v~~r~~~A~~~~~~~ 117 (119)
T d1p7ga2 65 DAQVLLALD-VWEHAYYLQYKNDRGSYVDNWWN---VVNWDDVERRLQKALNGQIAL 117 (119)
T ss_dssp TCEEEEEEE-CSGGGTHHHHTTCHHHHHHHHGG---GBCHHHHHHHHHHHHTTBCCS
T ss_pred CCeeEEEEe-chhhhhHHhhhccHHHHHHHHHH---HcCHHHHHHHHHHHHcCCccc
Confidence 345788887 679998 234555553 478999999999999887654
No 8
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.96 E-value=1.8e+02 Score=23.84 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=28.2
Q ss_pred ccceeEEeccccchhhH--------HHHHHHHHhhChhHHHHHHHHHHhhc
Q 005930 205 ETKHLVAVGLHAEYSYA--------RSLARFAATLGPVAWKVASRRIEQAL 247 (669)
Q Consensus 205 E~KqLVpVGlq~EhsYA--------RSLARFAAdLGPvaW~IAskRIer~L 247 (669)
....|+.+- -.||||= .=|..|- -=+=|+++.+|++++|
T Consensus 70 ~~~piL~lD-vWEHAYyldY~n~r~~Yi~~~~---~~iNW~~ve~rl~~~~ 116 (116)
T d1wb8a2 70 EIPIILILD-EFEHAYYLQYKNKRADYVNAWW---NVVNWDAAEKKLQKYL 116 (116)
T ss_dssp SCCEEEEEE-CSGGGTHHHHTTCHHHHHHHHG---GGBCHHHHHHHHHHTC
T ss_pred CCceeeeec-chhhhhHHHHhccHHHHHHHHH---HHcCHHHHHHHHHHhC
Confidence 455778888 7899982 2344443 4568999999999986
No 9
>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]}
Probab=6.22 E-value=2.8e+02 Score=23.74 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 005930 14 FLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELK 60 (669)
Q Consensus 14 ~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E~e~k 60 (669)
..|..+|..|+.. |++.-..| +.+-.+|.+++|+++.+.+.+
T Consensus 79 ~~i~~~A~~~~~~---~~~el~~l--~iHG~LHLlGyDH~~~~~~~~ 120 (150)
T d1tvia_ 79 LIVEENAREFNNT---FEKELLEV--VIHGILHLAGYDHEFEDKNSK 120 (150)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHH--HHHHHHHHHSCSSCCTTSCCH
T ss_pred HHHHHHHHHhCch---HHHHhHHH--HHHHHHHHcCCCCCCChHHHH
Confidence 4678899999875 44333222 467789999999987665443
No 10
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]}
Probab=6.15 E-value=88 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.6
Q ss_pred ccchhhHHHHHHHHHhhChhHHHHHHHHHHhhcCCCCccCCccccCCCCCCCC
Q 005930 215 HAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTP 267 (669)
Q Consensus 215 q~EhsYARSLARFAAdLGPvaW~IAskRIer~LPpg~kFGpGWVGE~E~~p~p 267 (669)
..++.|.+-||+-|-+|| |..-||+|+-..+-|
T Consensus 26 ~~~~~~~~~la~~AE~lG--------------------fd~~w~~eh~~~~dp 58 (362)
T d1nqka_ 26 PVDHGYLQQIAQAADRLG--------------------YTGVLIPTGRSCEDA 58 (362)
T ss_dssp CCCHHHHHHHHHHHHHHT--------------------CSEEEECCSTTSCCH
T ss_pred CCCHHHHHHHHHHHHHcC--------------------CCEEEeCCCCCCCCH
Confidence 346688999999999998 999999998764433
Done!