BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005931
(669 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 167/390 (42%), Gaps = 67/390 (17%)
Query: 33 LLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKL---ETPLHEAC 82
LLQR AS N T LH+AAR GH TE+ K + A N K +TPLH A
Sbjct: 33 LLQRGASPNVSNVKVETPLHMAARAGH----TEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 83 CQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS 140
G+ + L+E ANP +AT H + +A R+GH++ V L+ + E +
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLALLEK----EASQAC 141
Query: 141 VES---TPIYLAISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
+ TP+++A G +A +LE P AG KNG +PLH A N+++ KLL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG---KNGLTPLHVAVHHNNLDIVKLL 198
Query: 196 L----------------------NHNKDLA---LQYNKD-------GYTPLHLAAINGRV 223
L + ++A LQY G TPLHLAA G
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVL 283
+ +VA L S A+ + G T HL + L + + + + G T L
Sbjct: 259 E-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTRMGYTPL 315
Query: 284 HLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIG 343
H+A N + V+++++ D+ + + L Q G D T L K + +
Sbjct: 316 HVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 344 SPELSPPAAEVKLTLESPINLVKVTSSSTS 373
S +P A +L S +++KV + TS
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 133/294 (45%), Gaps = 36/294 (12%)
Query: 25 VGCSNK-RILLQRDASLN-------TALHLAARFGHVELV-----TEITKLCPELVAAEN 71
+G +N ++LL+ +A+ N T LH+AAR GHVE V E ++ C
Sbjct: 90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MT 143
Query: 72 EKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
+K TPLH A G V+ L+E A+P A K + +A +LD+VKLL+
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLP 200
Query: 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK---NGFSPLHYASSI 186
+ TP+++A + ++AR +L+ + G + G +PLH A+
Sbjct: 201 RGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQ----YGGSANAESVQGVTPLHLAAQE 255
Query: 187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET 246
G+ M LLL+ + L NK G TPLHL A G V + + D T G T
Sbjct: 256 GHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYT 313
Query: 247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
H+A + KFL + + + + + G + LH A + + V ++K
Sbjct: 314 PLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 110 SAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA 169
+ +A GHL +VK L+ + VE TP+++A GHT++A+ +L+ + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAF 229
K K+ +PLH A+ IG+ NM KLLL +N + L G+TPLH+AA G V+ ++A
Sbjct: 75 AKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLAL 132
Query: 230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLR 289
L AS +T G T H+A ++ K + L E G++ G T LH+AV
Sbjct: 133 LEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHH 189
Query: 290 KNYQFVEYII 299
N V+ ++
Sbjct: 190 NNLDIVKLLL 199
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 17/233 (7%)
Query: 31 RILLQRDASLNTA-------LHLAARFGHVELVTEITKLCPELVAAENEKLE--TPLHEA 81
+LL+RDA N A LH+A ++++V L P + + TPLH A
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK---LLLPRGGSPHSPAWNGYTPLHIA 219
Query: 82 CCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSV 141
Q EV+ L++ + A + + + LA ++GH ++V LL+++ S
Sbjct: 220 AKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS- 277
Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201
TP++L GH +A ++L T + G++PLH AS GN+ + K LL H D
Sbjct: 278 GLTPLHLVAQEGHVPVA-DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF 254
+ + K GY+PLH AA G I+ L + AS + +++ G T +A R
Sbjct: 337 VNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRL 387
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
+PLH AS +G++ + K LL + N TPLH+AA G ++ +L + A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEV-AKYLLQNKAK 72
Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
+ +T H A R N K L E N + G+T LH+A + + V
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLE--NNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 297 YIIKETVLDIYCRNHKNQTALDIIEQAG 324
++++ C K T L + + G
Sbjct: 131 ALLEKEASQA-CMTKKGFTPLHVAAKYG 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
++ LA R GHL+VVKLL+ + +D TP++LA GH ++ + +LE
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
K DKNG +PLH A+ G++ + KLLL D+ + +K+G TPLHLAA NG ++++
Sbjct: 62 NAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKL 119
Query: 229 FLSS 232
L +
Sbjct: 120 LLEA 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
TP++LA GH ++ + +LE K DKNG +PLH A+ G++ + KLLL D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
+ +K+G TPLHLAA NG +++ V L + A + G T HLA R K L
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 264 AES 266
E+
Sbjct: 121 LEA 123
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
T LHLAAR GH+E+V + + + V A+++ TPLH A G+ EV L+EA V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI 161
K + ++ LA R GHL+VVKLL+ + +D TP++LA GH ++ + +
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 162 LE 163
LE
Sbjct: 121 LE 122
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
NG +PLH A+ G++ + KLLL D+ + +K+G TPLHLAA NG +++ V L +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
A + G T HLA R K L E+ + +D+ G T LHLA + +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 295 VEYIIK 300
V+ +++
Sbjct: 117 VKLLLE 122
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D + T LHLAAR GH+E+V + + + V A+++ TPLH A G+ EV L+E
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
A V K + ++ LA R GHL+VVKLL+
Sbjct: 90 AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 121
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D + T LHLAAR GH+E+V + + + V A+++ TPLH A G+ EV L+E
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 96 A 96
A
Sbjct: 123 A 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
E++ +PLH A G+ ++ L++A + T + + ++ A HL+ VK LI
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV 189
L++ +D+ ST ++LA +GH ++ + +L D G++P+ +A+ +V
Sbjct: 66 AGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
++ KLLL+ D+ ++ N++ LH AA +G V I L ++ + +G++ H
Sbjct: 125 DLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLH 182
Query: 250 LAVRFDKYNAFK-FLAESFNTCLFHGQDQFGNTVLHLAVL 288
+A R ++Y+ FL+ + L +++ G T L A L
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTL---KNKEGETPLQCASL 219
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 6/189 (3%)
Query: 44 LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNH-EVSAFLMEANPTVAT 102
LH AA GHV++ + + + +E TPL EA + NH E +L++A V
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAA-ENNHLEAVKYLIKAGALVDP 72
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
K + E + LA ++GH +VV+ L++ + +D TP+ A H D+ + +L
Sbjct: 73 K-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR 222
+ ++ LH+A+ G V++ ++LL DL N G +PLH+AA R
Sbjct: 132 SKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENR 189
Query: 223 VKILVAFLS 231
+V FLS
Sbjct: 190 YDCVVLFLS 198
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+DA +T LHLAA+ GH E+V + V +++ TP+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM----------------- 115
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
A H+D+VKLL+++ + D+ E+ ++ A G
Sbjct: 116 -----------------IWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCV 157
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
DIA +L + + +G SPLH A+ + L L+ + D+ L+ NK+G TPL
Sbjct: 158 DIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQ 215
Query: 216 LAAINGRV 223
A++N +V
Sbjct: 216 CASLNSQV 223
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCL 271
+PLH AA G V I L + A+ D + T A + A K+L ++ L
Sbjct: 13 SPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GAL 69
Query: 272 FHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
+D G+T LHLA + +Y+ V+Y++ +D+ C++ T +
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
A+ ++AT+ + +S++A AC GH ++V+ L+ Q + ++D +P+++A S G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
+I + +L V+ ++NG +PLHYA+S + +LL N D Y+ T
Sbjct: 87 EIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TA 142
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
+H AA G +K +V L AS + T G T HLA ++ KFL
Sbjct: 143 MHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
G LD +K +L ++S ++DS T ++ A S GHT+I +L++ K D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
+SPLH A+S G + K LL + N++G TPLH AA R +I V L A+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAV---RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ 293
D Y T H A + F S N QD GNT LHLA + +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-----QDTEGNTPLHLACDEERVE 186
Query: 294 FVEYIIKETVLDIYCRNHKNQTALDI 319
++++ + IY N + +T L +
Sbjct: 187 EAKFLVTQGA-SIYIENKEEKTPLQV 211
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 41/211 (19%)
Query: 28 SNKRILLQRDASLNTALHLAARFGHVELVTEITKL-CPELVAAENEKLETPLHEACCQGN 86
++K + + D TALH A GH E+V + +L P V +++ +PLH A G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGR 85
Query: 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146
E+ L+ + H++ V NQ+ TP+
Sbjct: 86 DEIVKALL---------------------VKGAHVNAV----NQNG----------CTPL 110
Query: 147 YLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206
+ A S+ +IA +LE K D + +H A++ GN+ M +LL + +Q
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ- 168
Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASF 237
+ +G TPLHLA RV+ FL + AS
Sbjct: 169 DTEGNTPLHLACDEERVE-EAKFLVTQGASI 198
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
A+ ++AT+ + +S++A AC GH ++V+ L+ Q + ++D +P+++A S G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXD 86
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
+I + +L V+ ++NG +PLHYA+S + +LL N D Y+ T
Sbjct: 87 EIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TA 142
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
+H AA G +K +V L AS + T G T HLA ++ KFL
Sbjct: 143 MHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
G LD +K +L ++S ++DS T ++ A S GHT+I +L++ K D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
+SPLH A+S G + K LL + N++G TPLH AA R +I V L A+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAV---RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ 293
D Y T H A + F S N QD GNT LHLA + +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-----QDTEGNTPLHLACDEERVE 186
Query: 294 FVEYIIKETVLDIYCRNHKNQTALDI 319
++++ + IY N + +T L +
Sbjct: 187 EAKFLVTQGA-SIYIENKEEKTPLQV 211
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 41/211 (19%)
Query: 28 SNKRILLQRDASLNTALHLAARFGHVELVTEITKL-CPELVAAENEKLETPLHEACCQGN 86
++K + + D TALH A GH E+V + +L P V +++ +PLH A G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGX 85
Query: 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146
E+ L+ + H++ V NQ+ TP+
Sbjct: 86 DEIVKALL---------------------VKGAHVNAV----NQNG----------CTPL 110
Query: 147 YLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206
+ A S+ +IA +LE K D + +H A++ GN+ M +LL + +Q
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ- 168
Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASF 237
+ +G TPLHLA RV+ FL + AS
Sbjct: 169 DTEGNTPLHLACDEERVE-EAKFLVTQGASI 198
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAAR GH+E+V + K + V A+++ TPLH A
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 77
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++A V K + + + LA R+GHL++V++L+ + +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGK 135
Query: 144 TPIYLAISRGHTDIAREILE 163
TP LAI GH DIA E+L+
Sbjct: 136 TPFDLAIREGHEDIA-EVLQ 154
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DK+G++PLH A+ G++ + ++LL D+ + +
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 65
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
KDGYTPLHLAA G ++I+ L + A + G T HLA R + L ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 123
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
+ QD+FG T LA+ + E + K
Sbjct: 124 -GADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + +KDGYTPLHLAA G ++I+ L + A +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G T HLA R + L ++ + +D+ G T LHLA + + VE ++K
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
D+ ++ +T D+ + G D A L+K
Sbjct: 125 A-DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAAR GH+E+V + K + V A+++ TPLH A
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 77
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++A V K + + + LA R+GHL++V++L+ + +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGK 135
Query: 144 TPIYLAISRGHTDIAREILE 163
TP LAI G+ DIA E+L+
Sbjct: 136 TPFDLAIDNGNEDIA-EVLQ 154
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DK+G++PLH A+ G++ + ++LL D+ + +
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 65
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
KDGYTPLHLAA G ++I+ L + A + G T HLA R + L ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 123
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
+ QD+FG T LA+ N E + K
Sbjct: 124 -GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + +KDGYTPLHLAA G ++I+ L + A +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G T HLA R + L ++ + +D+ G T LHLA + + VE ++K
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
D+ ++ +T D+ G D A L+K
Sbjct: 125 A-DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 12/142 (8%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK--- 171
A R G D V++L+ + D TP++L ++ GH EI+EV ++A
Sbjct: 21 AARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHL----EIIEVLLKYAADVNA 75
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDL-ALQYNKDGYTPLHLAAINGRVKILVAFL 230
+DK+G++PLH A+ G++ + ++LL + D+ A+ Y GYTPLHLAA +G ++I+ L
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ--GYTPLHLAAEDGHLEIVEVLL 133
Query: 231 SSSPASFDRLTTYGETVFHLAV 252
A + +G+T F +++
Sbjct: 134 KYG-ADVNAQDKFGKTAFDISI 154
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHL GH+E++ + K + V A ++ TPLH A
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAY 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++ V ++++ + LA GHL++V++L+ + +D
Sbjct: 90 RGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 32 ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
+LL+ A +N T LHLAA GH+E+V + K + V A+++ +T +
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDN 156
Query: 85 GNHEVSAFLMEAN 97
GN +++ L + N
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM AN +H + LA GHL++V++L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
+ +DS+ TP++LA RGH ++ E+L D NGF+PLH A++IG++ + +
Sbjct: 73 VN-ADDSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
+LL H D+ Q +K G T ++ NG
Sbjct: 131 VLLKHGADVNAQ-DKFGKTAFDISIDNG 157
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA FGH+E+V + K + V A++ TPLH A
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAAD 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ EV L++ V +H + LA GHL++V++L+ + +D
Sbjct: 90 RGHLEVVEVLLKNGADVNAN-DHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + G+TPLHLAA G ++I+ L + A + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDS 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G T HLA + L + N + D G T LHLA + + VE ++K
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 43/178 (24%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PLH A+ IG+ + ++LL H D+ + + DG+TPLHLA
Sbjct: 29 EVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ 277
A NG ++I+ L YG V + QD
Sbjct: 88 ADNGHLEIVEVLLK-----------YGADV-------------------------NAQDA 111
Query: 278 FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
+G T LHLA R + + VE ++K D+ ++ +TA DI G D A L+KL
Sbjct: 112 YGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA GH E+V + K ++ A + + TPLH A
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW-TPLHLAAD 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V + + + LA +GHL++V++L+ + +D
Sbjct: 90 NGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
V A +++ TPLH A G+ E+ L++ V + + + + LA GHL++V++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEV 98
Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186
L+ + +D+ TP++LA RGH +I E+L DK G + +
Sbjct: 99 LLKYGADVN-AQDAYGLTPLHLAADRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 187 GNVNMTKLLLNHN 199
GN ++ ++L N
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
G L+ +K +L ++S ++DS T ++ A S GHT+I +L++ K D G
Sbjct: 18 GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 74
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
+SPLH A+S G + K LL + N++G TPLH AA R +I V L A+
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 132
Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
D Y T H A L + + QD GNT LHLA + + +
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNIQDTEGNTPLHLACDEERVEEAK 190
Query: 297 YIIKETVLDIYCRNHKNQTALDI 319
++ + IY N + +T L +
Sbjct: 191 LLVSQGA-SIYIENKEEKTPLQV 212
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
A+ ++AT+ + +S++A AC GH ++V+ L+ Q + ++D +P+++A S G
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRD 87
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
+I + +L + ++NG +PLHYA+S + +LL N D Y T
Sbjct: 88 EIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA---TA 143
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
+H AA G +K ++ L AS + T G T HLA ++ K L
Sbjct: 144 MHRAAAKGNLK-MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
T LH AC G+ E+ FL++ V K + S +A G ++VK L+ + +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
+ TP++ A S+ +IA +LE K D + +H A++ GN+ M +L
Sbjct: 102 AVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHIL 159
Query: 196 LNHNKDLALQYNKDGYTPLHLAAINGRV---KILVA 228
L + +Q + +G TPLHLA RV K+LV+
Sbjct: 160 LYYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVS 194
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 42/184 (22%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D + + LH+AA G E+V + + V A N+ TPLH A + HE++ L+E
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Query: 96 --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
ANP +H +A A +G+L ++ +L+ +
Sbjct: 129 GGANPDAK---DHYEATAMHRAAAKGNLKMIHILL---------------------YYKA 164
Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP 213
T+I D G +PLH A V KLL++ + ++ NK+ TP
Sbjct: 165 STNI--------------QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTP 209
Query: 214 LHLA 217
L +A
Sbjct: 210 LQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
G L+ +K +L ++S ++DS T ++ A S GHT+I +L++ K D G
Sbjct: 17 GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
+SPLH A+S G + K LL + N++G TPLH AA R +I V L A+
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
D Y T H A L + + QD GNT LHLA + + +
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 297 YIIKETVLDIYCRNHKNQTALDI 319
++ + IY N + +T L +
Sbjct: 190 LLVSQGA-SIYIENKEEKTPLQV 211
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
A+ ++AT+ + +S++A AC GH ++V+ L+ Q + ++D +P+++A S G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
+I + +L + ++NG +PLHYA+S + +LL N D Y T
Sbjct: 87 EIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA---TA 142
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
+H AA G +K ++ L AS + T G T HLA ++ K L
Sbjct: 143 MHRAAAKGNLK-MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
T LH AC G+ E+ FL++ V K + S +A G ++VK L+ + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
+ TP++ A S+ +IA +LE K D + +H A++ GN+ M +L
Sbjct: 101 AVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHIL 158
Query: 196 LNHNKDLALQYNKDGYTPLHLAAINGRV---KILVA 228
L + +Q + +G TPLHLA RV K+LV+
Sbjct: 159 LYYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVS 193
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 42/184 (22%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D + + LH+AA G E+V + + V A N+ TPLH A + HE++ L+E
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 96 --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
ANP +H +A A +G+L ++ +L+ +
Sbjct: 128 GGANPDAK---DHYEATAMHRAAAKGNLKMIHILL---------------------YYKA 163
Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP 213
T+I D G +PLH A V KLL++ + ++ NK+ TP
Sbjct: 164 STNI--------------QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTP 208
Query: 214 LHLA 217
L +A
Sbjct: 209 LQVA 212
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 80 EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
EA GN + L+E V + + ++ A ++GH ++VKLLI++ + +D
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-KD 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
S TP++ A GH +I + ++ K D +G +PLHYA+ G+ + KLL++
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
D+ + DG TPL LA +G +I+
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEIV 152
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
+ + L EA +K + +L+ N + D+ T LH AA+ GH E+V +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLI--ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 65 ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVV 124
+ V A++ TPLH A +G+ E+ L+ V K + + ++ A ++GH ++V
Sbjct: 62 D-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIV 119
Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159
KLLI++ + DS TP+ LA G+ +I +
Sbjct: 120 KLLISKGADVNT-SDSDGRTPLDLAREHGNEEIVK 153
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
A G+ D ++++E +D +G +PLHYA+ G+ + KLL++ D+ + +
Sbjct: 11 AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
DG TPLH AA G K +V L S A + + G T H A + K L
Sbjct: 69 DGRTPLHYAAKEGH-KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
NT D G T L LA N + V+ + K+
Sbjct: 128 DVNTS-----DSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D+ T LH AA+ GH E+V + + V A++ TPLH A +G+ E+ L+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ-SWL 133
V T + + ++ LA G+ ++VKLL Q WL
Sbjct: 125 KGADVNTS-DSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 140 SVESTPIYL-AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+VE + + A+ D+ +++LE + ++ G++PLH A + ++ +LLL H
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
D L+ K+G TP LAAI G VK+L FLS A + YG T F A + K
Sbjct: 62 GADPVLR-KKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVK 119
Query: 259 AFKFL 263
A KFL
Sbjct: 120 ALKFL 124
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 53/251 (21%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE--VRPRFAGKT 172
A + +D+V+ L+ + F+E+ TP++ A+ DI +L P
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL---R 68
Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
KNG +P A+ G+V + KL L+ D+ + + G+T AA+ G+VK L FL
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKAL-KFLYK 126
Query: 233 SPASF----------DRLTTYGETVFHLAVRFDKYNAFKFLAESF----NTC-------- 270
A+ +RL G T A K L + N C
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 271 -------------------LFHGQD-----QFGNTVLHLAVLRKNYQFVEYIIKETVLDI 306
L HG D + G T L LAV +K+ V+ ++++ ++I
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Query: 307 YCRNHKNQTAL 317
+ +TAL
Sbjct: 247 NDTDSDGKTAL 257
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 42 TALHLAARFGHVELV-TEITKLCPELVAAENEKLETPLHEACCQGNHEVSA---FLMEAN 97
TAL AA GHVE++ + ++ ++ A +N +H + +V A L++
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 98 PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI 150
V + ++ LA + HL +V+ L+ Q + + DS T + LA+
Sbjct: 210 ADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 140 SVESTPIYL-AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+VE + + A+ D+ +++LE + ++ G++PLH A + ++ +LLL H
Sbjct: 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81
Query: 199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
D L+ K+G TP LAAI G VK+L FLS A + YG T F A + K
Sbjct: 82 GADPVLR-KKNGATPFILAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVK 139
Query: 259 AFKFL---AESFNTCLFHGQDQ-----FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
A KFL + N +DQ G T L A + + + ++ ++ E D+ +
Sbjct: 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 311 HKNQTAL 317
+ + AL
Sbjct: 200 NMGRNAL 206
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 53/251 (21%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE--VRPRFAGKT 172
A + +D+V+ L+ + F+E+ TP++ A+ DI +L P
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL---R 88
Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
KNG +P A+ G+V + KL L+ D+ + + G+T AA+ G+VK L FL
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKAL-KFLYK 146
Query: 233 SPASF----------DRLTTYGETVFHLAVRFDKYNAFKFLAESF----NTC-------- 270
A+ +RL G T A K L + N C
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Query: 271 -------------------LFHGQD-----QFGNTVLHLAVLRKNYQFVEYIIKETVLDI 306
L HG D + G T L LAV +K+ V+ ++++ ++I
Sbjct: 207 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 266
Query: 307 YCRNHKNQTAL 317
+ +TAL
Sbjct: 267 NDTDSDGKTAL 277
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 42 TALHLAARFGHVELV-TEITKLCPELVAAENEKLETPLHEACCQGNHEVSA---FLMEAN 97
TAL AA GHVE++ + ++ ++ A +N +H + +V A L++
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 98 PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI 150
V + ++ LA + HL +V+ L+ Q + + DS T + LA+
Sbjct: 230 ADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 281
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT-- 172
A R G D V++L+ + D + TP++LA GH EI+EV ++
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHL----EIVEVLLKYGADVNA 75
Query: 173 -DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
D G +PLH A+ G++ + ++LL H D+ + + +G+TPLHLAA +G ++I+ L
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 232 SSPASFDRLTTYGETVFHLAV 252
A + +G+T F +++
Sbjct: 135 YG-ADVNAQDKFGKTAFDISI 154
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA+ GH+E+V + K ++ A +N TPLH A
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAAD 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V K ++E + LA GHL++V++L+ + +D
Sbjct: 90 NGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN---- 129
L L EA G + LM AN + + LA + GHL++V++L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 130 -QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN 188
+W D+ +TP++LA GH +I +L+ K D GF+PLH A+ G+
Sbjct: 73 VNAW------DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGH 125
Query: 189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
+ + ++LL + D+ Q +K G T ++ NG
Sbjct: 126 LEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNG 157
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL TD +G +PLH A++ G++ + ++LL H D+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AID 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
G TPLHLAA+ G ++I+ L A + + T+G+T HLA A E
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
L HG QD+FG T +++ N E + K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
DAS T LHLAA +GH+E+V + K + V A + TPLH A G+ E+ L++
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTD 156
V ++ + LA GHL++V++L+ + +D T ++I G+ D
Sbjct: 103 GADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNED 160
Query: 157 IAREILE 163
+A EIL+
Sbjct: 161 LA-EILQ 166
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DK+G++PLH A+ G++ + ++LL D+ + +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
KDGYTPLHLAA G ++I+ L + A + G T HLA R + L ++
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 135
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
+ QD+FG T +++ N E +
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAAR GH+E+V + K + V A+++ TPLH A
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++A V K + + + LA R+GHL++V++L+ + +D
Sbjct: 90 EGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + +KDGYTPLHLAA G ++I+ L + A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G T HLA R + L ++ + +D+ G T LHLA + + VE ++K
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
D+ ++ +TA DI G D A L+
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 80 EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
EA GN + L+E V + + ++ LA GH +VVKLL++Q +D
Sbjct: 10 EAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KD 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
S TP++LA GH ++ + +L K D +G +PLH A+ G+ + KLLL+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
D + DG TPL LA +G +++
Sbjct: 127 AD-PNTSDSDGRTPLDLAREHGNEEVV 152
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
A G+ D +++LE +D +G +PLH A+ G+ + KLLL+ D + +
Sbjct: 11 AAENGNKDRVKDLLENGADVNA-SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
DG TPLHLAA NG K +V L S A + + G+T HLA K L
Sbjct: 69 DGKTPLHLAAENGH-KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
NT D G T L LA N + V+ + K+
Sbjct: 128 DPNTS-----DSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ GN + K LL + D+ + DG TPLHLAA NG K +V L S A + +
Sbjct: 11 AAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGH-KEVVKLLLSQGADPNAKDS 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE- 301
G+T HLA K L + +D G T LHLA + + V+ ++ +
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQ--GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 302 -----------TVLDIYCRNHKNQTALDIIEQAG 324
T LD+ R H N+ + ++E+ G
Sbjct: 127 ADPNTSDSDGRTPLDL-AREHGNEEVVKLLEKQG 159
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME- 95
D+ T LHLAA GH E+V + + A +++ +TPLH A G+ EV L+
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQ 92
Query: 96 -ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
A+P + + ++ LA GH +VVKLL++Q DS TP+ LA G+
Sbjct: 93 GADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGADPNT-SDSDGRTPLDLAREHGN 148
Query: 155 TDIAR 159
++ +
Sbjct: 149 EEVVK 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D+ T LHLAA GH E+V + + A +++ +TPLH A G+ EV L+
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLS 124
Query: 96 --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ-SWL 133
A+P + + + ++ LA G+ +VVKLL Q WL
Sbjct: 125 QGADPNTS---DSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL TD +G +PLH A++ G++ + ++LL H D+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AID 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
G TPLHLAA+ G ++I+ L A + + T+G+T HLA A E
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
L HG QD+FG T +++ N E + K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
DAS T LHLAA +GH+E+V + K + V A + TPLH A G+ E+ L++
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTD 156
V ++ + LA GHL++V++L+ + +D T ++I G+ D
Sbjct: 103 GADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNED 160
Query: 157 IAREILE 163
+A EIL+
Sbjct: 161 LA-EILQ 166
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
TP++LA GH ++ + +LE K DKNG +PLH A+ G++ + KLLL D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSS 232
+ +K+G TPLHLAA NG ++++ L +
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
T LHLAAR GH+E+V + + + V A+++ TPLH A G+ EV L+EA V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLI 128
K + ++ LA R GHL+VVKLL+
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
++ LA R GHL+VVKLL+ + +D TP++LA GH ++ + +LE
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLL 196
K DKNG +PLH A+ G++ + KLLL
Sbjct: 62 NAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
NG +PLH A+ G++ + KLLL D+ + +K+G TPLHLAA NG +++ V L +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
A + G T HLA R K L E+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
TPLH A G+ EV L+EA V K + ++ LA R GHL+VVKLL+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 136 FEEDSVESTPIYLAISRGHTDIAREILE 163
+D TP++LA GH ++ + +LE
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268
+G TPLHLAA NG +++ V L + A + G T HLA R K L E+
Sbjct: 1 NGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
+ +D+ G T LHLA + + V+ +++
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D + T LHLAAR GH+E+V + + + V A+++ TPLH A G+ EV L+E
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 96 A 96
A
Sbjct: 90 A 90
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
N LH A V E+ P L+ +++ PLH + HE+++FL+ N
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99 TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
+ + + F +AC G+L+VVK L ++ + + + + T ++LA+ + ++
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
++ ++E K DK PLH A+S+G++ + +LL K +K G+TPL A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
G V + A +D + G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
P++ A +E+L +P + D++G PLH++ S +T LL+ +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
D G+TP H+A G +++ V L P +++T G T HLAV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
+FL E N +D+F LH A + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A G D V++L+ + +D+ TP++LA + G +I E+L +D
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
G +PLH A+ G++ + ++LL H D+ Y++ G+TPLHLAA++G+++I+ L
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHG- 128
Query: 235 ASFDRLTTYGETVFHLAV 252
A + G T F +++
Sbjct: 129 ADVNAQDALGLTAFDISI 146
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA G +E+V + K ++ A+++ + TPLH A
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI-TPLHLAAY 81
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V + + LA G L++V++L+ + +D++
Sbjct: 82 DGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN-AQDALGL 139
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I++G D+A EIL+
Sbjct: 140 TAFDISINQGQEDLA-EILQ 158
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
N LH A V E+ P L+ +++ PLH + HE+++FL+ N
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99 TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
+ + + F +AC G+L+VVK L ++ + + + + T ++LA+ + ++
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
++ ++E K DK PLH A+S+G++ + +LL K +K G+TPL A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
G V + A +D + G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
P++ A +E+L +P + D++G PLH++ S +T LL+ +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
D G+TP H+A G +++ V L P +++T G T HLAV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
+FL E N +D+F LH A + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 80 EACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE 137
EA GN + L+E A+P + + + ++ A GH ++VKLL+++ +
Sbjct: 10 EAAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
DS TP++ A GH +I + +L K D +G +PLHYA+ G+ + KLLL+
Sbjct: 67 -DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 198 HNKDLALQYNKDGYTPLHLAAINGRVKIL 226
D + DG TPL LA +G +I+
Sbjct: 125 KGADPNTS-DSDGRTPLDLAREHGNEEIV 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 149 AISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206
A G+ D +++LE P +D +G +PLHYA+ G+ + KLLL+ D +
Sbjct: 11 AAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL--- 263
+ DG TPLH AA NG +I V L S A + + G T H A K L
Sbjct: 67 DSDGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 264 AESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
NT D G T L LA N + V+ + K+
Sbjct: 126 GADPNTS-----DSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME- 95
D+ T LH AA GH E+V + + A +++ TPLH A G+ E+ L+
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSK 92
Query: 96 -ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
A+P + + ++ A GH ++VKLL+++ DS TP+ LA G+
Sbjct: 93 GADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNT-SDSDGRTPLDLAREHGN 148
Query: 155 TDIAR 159
+I +
Sbjct: 149 EEIVK 153
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
+D+ T LH AA GH E+V + + A +++ TPLH A G+ E+ L+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLS 124
Query: 96 --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ-SWL 133
A+P + + + ++ LA G+ ++VKLL Q WL
Sbjct: 125 KGADPNTS---DSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
N LH A V E+ P L+ +++ PLH + HE+++FL+ N
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99 TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
+ + + F +AC G+L+VVK L ++ + + + + T ++LA+ + ++
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
++ ++E K DK PLH A+S+G++ + +LL K +K G+TPL A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
G V + A +D + G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
P++ A +E+L +P + D++G PLH++ S +T LL+ +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
D G+TP H+A G +++ V L P +++T G T HLAV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
+FL E N +D+F LH A + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ D TP+++A + GH +I E+L D
Sbjct: 9 AARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDT 66
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
NG +PLH A+S+G++ + ++LL + D+ + + G TPL+LAA G ++I+ L
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHG- 124
Query: 235 ASFDRLTTYGETVFHLAV 252
A + +G+T F +++
Sbjct: 125 ADVNAQDKFGKTAFDISI 142
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 163 EVRPRFAGKTDKNGF-----SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N + +PLH A+++G++ + ++LL + D+ + +G TPLHLA
Sbjct: 17 EVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLA 75
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG--- 274
A G ++I+ L A + G T +LA + + L L HG
Sbjct: 76 ASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVL-------LKHGADV 127
Query: 275 --QDQFGNTVLHLAVLRKNYQFVEYI 298
QD+FG T +++ N E +
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A N T LH+AA GH+E+V + + ++ A + TPLH A
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG-TTPLHLAAS 77
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V K + + LA GHL++V++L+ + +D
Sbjct: 78 LGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGK 135
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 136 TAFDISIDIGNEDLA-EILQ 154
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL TD +G++PLH A+S G++ + ++LL + D+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
G TPLHLAA G ++I+ L A + G T HLA ++ + L
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVL---- 132
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYI 298
L HG QD+FG T +++ N E +
Sbjct: 133 ---LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA GH+E+V + K ++ A++ + TPLH A
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI-TPLHLAAA 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V +++ + LA + GHL++V++L+ + +D
Sbjct: 90 TGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ N DGYTPLHLAA NG ++I+ L + A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDL 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ-----DQFGNTVLHLAVLRKNYQFVEY 297
G T HLA + L L HG D G+T LHLA + + VE
Sbjct: 79 TGITPLHLAAATGHLEIVEVL-------LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 298 IIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
++K D+ ++ +TA DI G D A L+
Sbjct: 132 LLKHGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 155 TDIAREILE---------VRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNK 200
+D+ R++LE VR A D N G +PLH A+ G++ + ++LL H
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
D+ + GYTPLHLAA G ++I+ L + A + + + G T HLA ++
Sbjct: 72 DVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 261 KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
+ L L HG QD+FG T +++ N E + K
Sbjct: 130 EVL-------LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLNTA-------LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N A LHLAA GH+E+V + K + V A + TPLH A
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAY 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ N ++ + + LA + G+L++V++L+ + +D
Sbjct: 90 WGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 32 ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
+LL+ A +N T LHLAA++G++E+V + K + V A+++ +T +
Sbjct: 98 VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDN 156
Query: 85 GNHEVSAFLMEAN 97
GN +++ L + N
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 80 EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
EA GN + L+E V + + ++ A GH +VVKLLI++ + + D
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-D 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
S TP++ A GH ++ + ++ K D +G +PLH+A+ G+ + KLL++
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
D+ + DG TPL LA +G +++
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEVV 152
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
A G+ D ++++E +D +G +PLH+A+ G+ + KLL++ D+ + +
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
DG TPLH AA NG K +V L S A + + G T H A K L
Sbjct: 69 DGRTPLHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
NT D G T L LA N + V+ + K+
Sbjct: 128 DVNTS-----DSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
+ + L EA +K + +L+ N + D+ T LH AA GH E+V +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLI--ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 65 ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVV 124
+ V A++ TPLH A G+ EV L+ V K + + ++ A GH +VV
Sbjct: 62 D-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVV 119
Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159
KLLI++ + DS TP+ LA G+ ++ +
Sbjct: 120 KLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVK 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM AN + + LA GHL++V++L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
+ +DS+ TP++LA RGH +I E+L +D +GF+PLH A+ G++ + +
Sbjct: 73 VN-AKDSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
+LL + D+ Q +K G T ++ NG
Sbjct: 131 VLLKNGADVNAQ-DKFGKTAFDISIDNG 157
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + D TP++LA GH +I +L+ K D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DS 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
G +PLH A+ G++ + ++LL + D+ + G+TPLHLAA G ++I+ L +
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNG- 136
Query: 235 ASFDRLTTYGETVFHLAV 252
A + +G+T F +++
Sbjct: 137 ADVNAQDKFGKTAFDISI 154
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA FGH+E+V + K ++ A ++ + TPLH A
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV-TPLHLAAR 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++ V +H + LA ++GHL++V++L+ + +D
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSH-GFTPLHLAAKRGHLEIVEVLLKNGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G++PLH A+ G++ + ++LL + D+ + + G TPLHLA
Sbjct: 29 EVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ 277
A G ++I+ L + A + ++G T HLA + + L + N + QD+
Sbjct: 88 ARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLK--NGADVNAQDK 144
Query: 278 FGNTVLHLAVLRKNYQFVEYIIK 300
FG T +++ N E + K
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + + G+TPLHLAA NG ++I+ L + A + +
Sbjct: 21 AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDH 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G T LA F + L + N + D G+T LHLA + + + VE ++K
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLK--NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
DAS T LHLAA GH+E+V + K ++ A ++ + TPL A G+ E+ L++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVLLKN 102
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTD 156
V + E + LA GHL++V++L+ + +D T ++I G+ D
Sbjct: 103 GADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNED 160
Query: 157 IAREILE 163
+A EIL+
Sbjct: 161 LA-EILQ 166
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 104 LNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
+N E S ++ LA GHL++V++L+ + D TP+ LA GH +I E
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIV-E 97
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220
+L D G +PLH A+ G++ + ++LL + D+ Q +K G T ++ N
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDN 156
Query: 221 G 221
G
Sbjct: 157 G 157
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 32 ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
+LL+ A +N T LHLAA FGH+E+V + K + V A+++ +T +
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDN 156
Query: 85 GNHEVSAFLMEAN 97
GN +++ L + N
Sbjct: 157 GNEDLAEILQKLN 169
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL D G +PLH A+ G++ + ++LL H D+ +
Sbjct: 19 LEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
G+TPLHLAA+ G ++I+ L YG V NAF
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLK-----------YGADV----------NAF------- 109
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
D G+T LHLA + + VE ++K D+ ++ +TA DI G D
Sbjct: 110 --------DMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNED 160
Query: 328 DATSLK 333
A S +
Sbjct: 161 LAKSCR 166
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA GH+E+V + K ++ AA+ TPLH A
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF-TPLHLAAM 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V + + LA +GHL++V++L+ + +D
Sbjct: 90 TGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAR 159
T ++I G+ D+A+
Sbjct: 148 TAFDISIDNGNEDLAK 163
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEAN 97
+ L L AAR G + V + ++ A +N L TPLH A G+ E+ L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHG 70
Query: 98 PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDI 157
V + + LA GHL++V++L+ + D STP++LA GH
Sbjct: 71 ADVDAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHL-- 126
Query: 158 AREILEVRPRFAGKT---DKNGFSPLHYASSIGNVNMTK 193
EI+EV ++ DK G + + GN ++ K
Sbjct: 127 --EIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNT 269
G+TPLHLAA G ++I+ L + A + T G T HLA F + L + N
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG-ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK--NG 103
Query: 270 CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA 329
+ +D G T LHLA R + + VE ++K D+ ++ +TA DI G D A
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGNEDLA 162
Query: 330 TSLKKL 335
L+KL
Sbjct: 163 EILQKL 168
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + D V TP++LA GH +I E+L D
Sbjct: 21 AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDT 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
G +PLH A+ G++ + ++LL + D+ + + +G TPLHLAA G ++I+ L
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKYG- 136
Query: 235 ASFDRLTTYGETVFHLAV 252
A + +G+T F +++
Sbjct: 137 ADVNAQDKFGKTAFDISI 154
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 110 SAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA 169
+ LA GHL++V++L+ + D++ STP++LA GH +I +L+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
K D NG +PLH A++ G++ + ++LL + D+ Q +K G T ++ NG
Sbjct: 108 AK-DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNG 157
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLNTA-------LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N A LHLAA +GH+E+V + K + V A + TPLH A
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAH 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ V K + + LA +GHL++V++L+ + +D
Sbjct: 90 FGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I+ G+ D+A EIL+
Sbjct: 148 TAFDISINNGNEDLA-EILQ 166
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
T ++G SPLH A+ G ++ LLL H + A N D PLHLA G +++ L
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291
S+ A ++ G T A + L + + + + GNT LH AV+ K+
Sbjct: 141 SN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEAVIEKH 197
Query: 292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQ 322
VE ++ + N + +TA+D EQ
Sbjct: 198 VFVVELLLLHGA-SVQVLNKRQRTAVDCAEQ 227
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
+ + S +A G D++ LL+ ++ ++ P++LA +GH + + +L+
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
+ K D +G +PL YA S G+ + LLL H + NK G T LH A I V
Sbjct: 142 NAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHVF 199
Query: 225 ILVAFL 230
++ L
Sbjct: 200 VVELLL 205
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
++ LH+AA G +L+ + K A N PLH AC QG+ +V L+++N
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK- 144
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLI 128
K + + AC GH ++V LL+
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLL 172
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKL---ETPLHEACCQGNHEVSAF 92
R+A LHLA + GH ++V K + A N+K TPL AC G+HE+ A
Sbjct: 115 RNADQAVPLHLACQQGHFQVV----KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL 170
Query: 93 LMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
L++ ++ N++ +A A + H+ VV+LL+
Sbjct: 171 LLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLL 205
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM AN + ++ LA +GHL++V++L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
+ D + TP++LA GH +I E+L TD GF+PLH A+ G++ + +
Sbjct: 73 VN-AADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
+LL + D+ Q +K G T ++ NG
Sbjct: 131 VLLKYGADVNAQ-DKFGKTAFDISIDNG 157
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + + G TPLHLAAI G ++I+ L A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADK 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
G+T HLA + + L + N + D +G T LHLA + + VE ++K
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA GH+E+V + K ++ AA+ +TPLH A
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG-DTPLHLAAL 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
G+ E+ L++ N + + LA GHL++V++L+ + +D
Sbjct: 90 YGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL D++G +PLH A+ +G++ + ++LL + D+ + N
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
G TPLHLAAI G ++I+ L A + +G+T F +++
Sbjct: 79 F-GITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 38/153 (24%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ ++DG TPLHLAA G ++I+ L
Sbjct: 21 AARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLK----------- 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
YG V + +D FG T LHLA +R + + VE ++K
Sbjct: 69 YGADV-------------------------NAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 104 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA+ GH+E+V + K ++ A +N + TPLH A
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI-TPLHLAAI 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ E+ L++ V + + ++AF ++ G+ D+ ++L
Sbjct: 90 RGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM AN L+ + + LA + GHL++V++L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
+ ED+ TP++LA RGH +I E+L DK G + + GN ++ +
Sbjct: 73 VN-AEDNFGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 194 LLLNHN 199
+L N
Sbjct: 131 ILQKLN 136
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + +D TP+YLA + GH +I E+L D
Sbjct: 21 AARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDA 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
GF+PLH A+ IG++ + ++LL H D+ Q +K G T ++ NG
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNG 124
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PL+ A++ G++ + ++LL + D+ + G+TPLHLA
Sbjct: 29 EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
A G ++I L A + +G+T F +++
Sbjct: 88 AFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T L+LA GH+E+V + K ++ A + TPLH A
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF-TPLHLAAF 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
G+ E++ L++ V + + ++AF ++ G+ D+ ++L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASF 237
+PLH+A+ G+++M L+ + D +L + +G + +HLAA G I VA+L +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSI-VAYLIAKGQDV 135
Query: 238 DRLTTYGET-VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
D + G T + A R + + L +FN + G NT LH AVL N +
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 297 YIIKETVLDIYCRNHKNQTALDIIEQ 322
++ E ++ +N K ++ALD+ +Q
Sbjct: 195 LLL-EAGANVDAQNIKGESALDLAKQ 219
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 43/194 (22%)
Query: 28 SNKRILLQRDASLN-TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN 86
S I+ Q LN T LH A R GH+ +V ++ K
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY------------------------ 98
Query: 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146
A+P++ ++ E S LA + GH +V LI + ++ D TP+
Sbjct: 99 --------GADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPL 146
Query: 147 YLAISRGHT-DIAREIL--EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
A R H+ D R +L V K KN + LH+A GN + LLL ++
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--TALHWAVLAGNTTVISLLLEAGANVD 204
Query: 204 LQYNKDGYTPLHLA 217
Q N G + L LA
Sbjct: 205 AQ-NIKGESALDLA 217
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDL-ALQYNKDGYTPLHL 216
EVR A D N G +PLH A+ +G++ + ++LL + D+ AL ++ G TPLHL
Sbjct: 29 EVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS--GSTPLHL 86
Query: 217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD 276
AA G ++I+ L A + T G T HLA + L + + QD
Sbjct: 87 AAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKY--GADVNAQD 143
Query: 277 QFGNTVLHLAVLRKNYQFVEYI 298
+FG T +++ N E +
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAAR GH+E+V + K + V A + TPLH A
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAK 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
+G+ E+ L++ V + + LA GHL++V++L+ + +D
Sbjct: 90 RGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 144 TPIYLAISRGHTDIAREILE 163
T ++I G+ D+A EIL+
Sbjct: 148 TAFDISIDNGNEDLA-EILQ 166
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 227 VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA 286
V L ++ A + TYG+T HLA R + L + N + D G+T LHLA
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLA 87
Query: 287 VLRKNYQFVEYIIK 300
R + + VE ++K
Sbjct: 88 AKRGHLEIVEVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL D+ G +PLH A+ ++ + ++LL H D+ ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHD 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
DG TPLHLAA+ G ++I+ L A + +G+T F +++
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + D +TP++LA H +I E+L D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDN 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
+G +PLH A+ G++ + ++LL H D+ Q +K G T ++ NG
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 124
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D NT LHLAA + H+E+V + K ++ A +N+ TPLH A G+ E+ L++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLAALFGHLEIVEVLLKH 102
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
V + + ++AF ++ G+ D+ ++L
Sbjct: 103 GADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303
G T HLA +D + L + H D G+T LHLA L + + VE ++K
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDND--GSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 304 LDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 105 -DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLN----HNKDLALQYNKDGYTPLHLAAIN--- 220
A + D++G +PLH A GN+ L+N ++L + YN TPLHLA I
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLP 59
Query: 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF--NTCLFHGQDQF 278
V++LV +SP + DR +G+T HLA + L +S T ++
Sbjct: 60 SVVRLLVTA-GASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 279 GNTVLHLAVLRKNYQFVEYIIK 300
G T LH+AV + + V+ +++
Sbjct: 116 GLTALHVAVNTECQETVQLLLE 137
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 202 LALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
+A + ++DG TPLH+A + G V LV D +T HLAV +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 259 AFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV---LDIYCRNHKNQT 315
+ L + + + D+ G T HLA ++ + ++ LD+ RN+ T
Sbjct: 61 VVRLLVTAGASPM--ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 316 ALDI 319
AL +
Sbjct: 119 ALHV 122
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 10/207 (4%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCP----ELVAAENEKLETPLHEACCQGNHEVSAF 92
D +T LH+A G++ V + L EL N + +TPLH A V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVRL 64
Query: 93 LMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQS--WLMEFEEDSVES-TPIYLA 149
L+ A + L+ Q+A LAC ++ L++ + ++ E + + T +++A
Sbjct: 65 LVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 150 ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD 209
++ + + +LE K+G SPL +A +++M +LLL H ++ Q
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM-YS 182
Query: 210 GYTPLHLAAINGRVKILVAFLSSSPAS 236
G + LH A+ G + ++ + S S
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 100 VATKLNHESQSAFSLACRQGHLDVVKLLIN--QSWLMEFE-EDSVESTPIYLAISRGHTD 156
+AT+ + + + +A QG+L V L+N Q E + +++ TP++LA+
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 157 IAREILEVRPRFAGKT----DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY---NKD 209
+ R ++ AG + D++G + H A + + LL+ L N D
Sbjct: 61 VVRLLVT-----AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFN 268
G T LH+ A+N + V L A D + G + AV + + + L +
Sbjct: 116 GLTALHV-AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
+ Q G++ LH A R V +++ D +N N T L
Sbjct: 175 N--VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPL 220
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 43 ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTV 100
++H A G ++ + E + LV +E+ TPL A G E FL+E A+P +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
K E +SA SLA G+ D+V LL+ + + D TP+ A+ H
Sbjct: 65 LAK---ERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEA 120
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+L + D +G++P+ A ++G + +++ NH
Sbjct: 121 LLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENH 157
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201
+S I+ ++G D +E L K D+ GF+PL +AS+ G + + LL D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
+ K+ + L LA+ G I V L + G T AVR + +
Sbjct: 62 PHI-LAKERESALSLASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 262 FLAESFNTCLFHGQD-----QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
L L G D G T + LAV Y+ V+ +I+ +L ++ N
Sbjct: 120 AL-------LARGADLTTEADSGYTPMDLAV-ALGYRKVQQVIENHILKLFQSN 165
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 174 KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
K+G +PLH A+ G+ K LL+ D+ + +KDG TPLHLAA NG +I V L +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEI-VKLLLAK 64
Query: 234 PASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
A + + G T HLA + + K L
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
NT LH AA+ GH E V ++ + V A ++ TPLH A G+ E+ L+ V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLL 127
+ + + + LA + GH ++VKLL
Sbjct: 69 NAR-SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
KDG TPLH AA NG + + LS A + + G T HLA + K L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR 309
+D GNT HLA +++ V+ ++ D+ R
Sbjct: 66 ADVNARSKD--GNTPEHLAKKNGHHEIVK-LLDAKGADVNAR 104
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
TPLH A G+ E L+ V + + + + LA + GH ++VKLL+ + +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 136 FEEDSVESTPIYLAISRGHTDIAR 159
+TP +LA GH +I +
Sbjct: 70 ARSKD-GNTPEHLAKKNGHHEIVK 92
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A + GH + VK L+++ + +TP++LA GH +I + +L ++ K
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVNARS-K 73
Query: 175 NGFSPLHYASSIGNVNMTKLL 195
+G +P H A G+ + KLL
Sbjct: 74 DGNTPEHLAKKNGHHEIVKLL 94
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 43 ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTV 100
++H A G ++ + E + LV +E+ TPL A G E FL+E A+P +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
K E +SA SLA G+ D+V LL+ + + D TP+ A+ H
Sbjct: 65 LAK---ERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVHGNHVKCVEA 120
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+L + D +G++P+ A ++G + +++ NH
Sbjct: 121 LLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENH 157
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 15/174 (8%)
Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201
+S I+ ++G D +E L K D+ GF+PL +AS+ G + + LL D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
+ K+ + L LA+ G I V L + G T AV + +
Sbjct: 62 PHI-LAKERESALSLASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVE 119
Query: 262 FLAESFNTCLFHGQD-----QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
L L G D G T + LAV Y+ V+ +I+ +L ++ N
Sbjct: 120 AL-------LARGADLTTEADSGYTPMDLAV-ALGYRKVQQVIENHILKLFQSN 165
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 35/234 (14%)
Query: 33 LLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG 85
LL+R A +N TALH A +V++V + + + +NE PLH A G
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCG 117
Query: 86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTP 145
+++ +L+ V +N E + +A + ++++ +N+ + + E E
Sbjct: 118 YLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEER 175
Query: 146 IYLAISR-----GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
I L +R GH + R K+G + LH A++ G + KLL+
Sbjct: 176 IMLRDARQWLNSGHINDVRHA------------KSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 201 DLALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLA 251
D+ ++ + DG+TPLH AA G+ +ILV L A + G+T F +A
Sbjct: 224 DVNIK-DYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVA 272
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 91/244 (37%), Gaps = 56/244 (22%)
Query: 81 ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI----------NQ 130
AC G+ E L+E + N + +A AC ++D+VK L+ N+
Sbjct: 47 ACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI---- 186
W+ P++ A S G+ DIA E L + G + G +PL A
Sbjct: 106 GWI-----------PLHAAASCGYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 187 ---GNVNM-------------------TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
VN + LN +++ K G T LH+AA G +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 225 ILVAFLSSSPASFD-RLTTY-GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
+L + A +D + Y G T H A + K A + L E N C ++ G T
Sbjct: 214 VLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQTA 268
Query: 283 LHLA 286
+A
Sbjct: 269 FDVA 272
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + +D+ TP++LA RGH +I E+L +D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNASDS 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
G +PLH A+++G++ + ++LL + D+ Q +K G T ++ NG
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PLH A+ G++ + ++LL H D+ + G TPLHLA
Sbjct: 29 EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
A G ++I+ L A + +G+T F +++
Sbjct: 88 ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA+ GH+E+V + K ++ A+++ TPLH A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG-RTPLHLAAT 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
G+ E+ L+E V + + ++AF ++ G+ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 38/153 (24%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + G TPLHLAA G ++I+ L
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLK----------- 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
+G V + D +G T LHLA + + VE ++ E
Sbjct: 69 HGADV-------------------------NASDSWGRTPLHLAATVGHLEIVEVLL-EY 102
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 45 HLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVAT 102
LAA+ + L T I + ++ +E+ TPL A G V FL++ A+P +
Sbjct: 25 QLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 80
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
L +SA SLAC +G+ D+VK+L++ + E D TP+ A+ H + +L
Sbjct: 81 -LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLL 138
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
E +TD +G++ + A ++G ++ +++ +H
Sbjct: 139 ESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 173
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
TD+ GF+PL +A++ G + + + LL + D L K + L LA G I V L
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDI-VKMLL 105
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
+ G T AV + K L ES
Sbjct: 106 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
A ++ T +EIL+ + D G +PL+ A ++ + K L++ D+ LQ N
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NS 70
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268
+P A GR +IL L + ++ YG A + K L E
Sbjct: 71 ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 269 TCLFHGQDQFGNTVLHLAV-LRKNYQFVEYIIK---ETVLDIYCRNHKNQTALDIIEQAG 324
+ Q+ FG T L AV LR+ Q + I+K E D +++ +TA+D Q G
Sbjct: 131 EDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D NT L++A +E+ + + + +N ++P A QG E+ A++++
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL-MEFEEDSVESTPI-YLAISRG- 153
K N +A A +GH+D VKLL+ ++F+ D + I + + G
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 154 --HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
+ DI + ++E + K D +G + + YA+ G ++K+L +N
Sbjct: 155 QLYQDIVKLLMENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
+++ E + ++A +++ K LI++ + + +S+ +P A ++G T+I +L
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYML 92
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK-DLALQYNKDGYTPL 214
+ K ++ G + L A+ G+++ KLLL + D+ Q N GYT L
Sbjct: 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTAL 144
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 45 HLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVAT 102
LAA+ + L T I + ++ +E+ TPL A G V FL++ A+P +
Sbjct: 9 QLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 64
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
L +SA SLAC +G+ D+VK+L++ + E D TP+ A+ H + +L
Sbjct: 65 -LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
E +TD +G++ + A ++G ++ +++ +H
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 157
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
TD+ GF+PL +A++ G + + + LL + D L K + L LA G I V L
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDI-VKMLL 89
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
+ G T AV + K L ES
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
D +STP++LA I + +L+ K DK G PLH A S G+ +T+LLL H
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 199 NKDL-ALQYNKDGYTPLHLAAINGRVKILVAFLS 231
+ A+ + +TPLH AA RV++ LS
Sbjct: 114 GACVNAMDLWQ--FTPLHEAASKNRVEVCSLLLS 145
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 31 RILLQRDASLNT-------ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
++LLQ A ++ LH A +GH E VTE+ V A + TPLHEA
Sbjct: 75 QLLLQHGADVHAKDKGGLVPLHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAAS 133
Query: 84 QGNHEVSAFLME--ANPTVATKLNHESQSAFSL---------------------ACRQGH 120
+ EV + L+ A+PT+ +N +SA + A R+
Sbjct: 134 KNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD 190
Query: 121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR--EILEVRPRFAGKTDKNGFS 178
L VK + ++ F++ T ++ A++ H + E+L + + +K+ +
Sbjct: 191 LAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 179 PLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
PLH A+ + ++ ++L H + + G T LH AA+ G ++ LS
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALHRAALAGHLQTCRLLLS 301
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 39/265 (14%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D +T LHLAA + V +V + + ++ A + L PLH AC G++EV+ L++
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL-VPLHNACSYGHYEVTELLLKH 113
Query: 97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ----SWLMEFEEDSVESTPIYLAISR 152
V ++ + A + ++V LL++ + + + +V+ P R
Sbjct: 114 GACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 153 ------GHT--DIARE--ILEVRPRFA-----GKTDKNGFSPLHYASSI---GNVNMTKL 194
GH+ ARE + +V+ A K ++ + LH A + + +L
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Query: 195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF 254
LL ++ + NKD TPLH+AA ++ L A + L + G+T H A
Sbjct: 233 LLRKGANVN-EKNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAA-- 288
Query: 255 DKYNAFKFLAESFNTC---LFHGQD 276
LA TC L +G D
Sbjct: 289 --------LAGHLQTCRLLLSYGSD 305
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 46 LAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVATK 103
LAA+ + L T I + ++ +E+ TPL A G V FL++ A+P +
Sbjct: 8 LAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--- 62
Query: 104 LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163
L +SA SLAC +G+ D+VK+L++ + E D TP+ A+ H + +LE
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+TD +G++ + A ++G ++ +++ +H
Sbjct: 122 SGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 155
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
TD+ GF+PL +A++ G + + + LL + D L K + L LA G I V L
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDI-VKMLL 87
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
+ G T AV + K L ES
Sbjct: 88 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + +D+ TP++LA RGH +I E+L +D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNASDI 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
G +PLH A+++G++ + ++LL + D+ Q +K G T ++ NG
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PLH A+ G++ + ++LL H D+ + G TPLHLA
Sbjct: 29 EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
A G ++I+ L A + +G+T F +++
Sbjct: 88 ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA+ GH+E+V + K + V A + TPLH A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAAT 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
G+ E+ L+E V + + ++AF ++ G+ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 38/153 (24%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + G TPLHLAA G ++I+ L
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLK----------- 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
+G V + D +G T LHLA + + VE ++ E
Sbjct: 69 HGADV-------------------------NASDIWGRTPLHLAATVGHLEIVEVLL-EY 102
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 209 DGYTPLHLAAING-------------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
DG+TPL +A+ +G ++ F+ + ++ GET HLA R+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
+ +A K L E+ QD G T LH AV + +I+ D+ R H T
Sbjct: 69 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 316 AL 317
L
Sbjct: 127 PL 128
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+TD+ G + LH A+ + K LL + D +Q N G TPLH A + +
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 110
Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
+ D G T LA R + L S + D G + LH
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSALH 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
Q D + TALHLAAR+ + + + + +N TPLH A V L+
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG-RTPLHAAVSADAQGVFQILI 110
Query: 95 EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
T H+ + LA R +++ LIN H
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-----------------------H 147
Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPL 214
D+ D G S LH+A+++ NV+ +LL + + +Q N++ TPL
Sbjct: 148 ADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-ETPL 194
Query: 215 HLAAING 221
LAA G
Sbjct: 195 FLAAREG 201
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 209 DGYTPLHLAAING-------------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
DG+TPL +A+ +G ++ F+ + ++ GET HLA R+
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
+ +A K L E+ QD G T LH AV + +I+ D+ R H T
Sbjct: 70 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 316 AL 317
L
Sbjct: 128 PL 129
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 45/235 (19%)
Query: 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
Q D + TALHLAAR+ + + + + +N TPLH A V L+
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG-RTPLHAAVSADAQGVFQILI 111
Query: 95 EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
T H+ + LA R +++ LIN H
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-----------------------H 148
Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPL 214
D+ D G S LH+A+++ NV+ +LL + + +Q N++ TPL
Sbjct: 149 ADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-ETPL 195
Query: 215 HLAAINGR---VKILVAFLSSSPAS--FDRL--TTYGETVFHLAVR-FDKYNAFK 261
LAA G K+L+ ++ + DRL E + H VR D+YN +
Sbjct: 196 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 250
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+TD+ G + LH A+ + K LL + D +Q N G TPLH A + +
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 111
Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
+ D G T LA R + L S + D G + LH
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSALH 163
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 82 CCQGNHEVSAFLMEANPTVATKLNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEE 138
C +GN ++ LN FS ACR+G VV++LI + +
Sbjct: 13 CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+ TP++LA S GH DI +++L+ + +++G PLHYA G + + L+
Sbjct: 70 RG-DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-A 126
Query: 199 NKDLALQYNKDGYTPLHLA 217
N L NK G P+ A
Sbjct: 127 NGALVSICNKYGEMPVDKA 145
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194
EF +D I+ G+ R L+ + D +GFSPLH+A G + ++
Sbjct: 4 EFMDD------IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM 57
Query: 195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
L+ + + N+ TPLHLAA +G I+ L A + + +G H A
Sbjct: 58 LIMRGARINVM-NRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYAC 113
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 32 ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
+L+ R A +N T LHLAA GH ++V ++ + ++ A NE PLH AC
Sbjct: 57 MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFW 115
Query: 85 GNHEVSAFLMEANPTVATKLN 105
G +V+ L+ AN + + N
Sbjct: 116 GQDQVAEDLV-ANGALVSICN 135
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 60 TKLCPE-LVAAENEKLETPLHEACCQGNHEVSAFLMEA--NPTVATKLNHESQSAFSLAC 116
T L P VA + E ++ PLHEA +GN ++L E N L+ +A AC
Sbjct: 58 TGLIPSNYVAEQAESIDNPLHEAAKRGNL---SWLRECLDNRVGVNGLDKAGSTALYWAC 114
Query: 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR 167
GH D+V+ L Q + +++ + T ++ A +G+ DI + +L R
Sbjct: 115 HGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + +D+ TP++LA RGH +I E+L D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNARDI 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
G +PLH A+++G++ + ++LL + D+ Q +K G T ++ NG
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PLH A+ G++ + ++LL H D+ + + G TPLHLA
Sbjct: 29 EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
A G ++I+ L A + +G+T F +++
Sbjct: 88 ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA+ GH+E+V + K + V A + TPLH A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAAT 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
G+ E+ L+E V + + ++AF ++ G+ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 38/153 (24%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + G TPLHLAA G ++I+ L
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLK----------- 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
+G V + +D +G T LHLA + + VE ++ E
Sbjct: 69 HGADV-------------------------NARDIWGRTPLHLAATVGHLEIVEVLL-EY 102
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
D+ ++ +TA DI G D A L+KL
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 68 AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
A N + + L EA G+ E L + + A + VV+ L
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG 187
+ + +D P++ A S GH ++A E+L D F+PLH A++ G
Sbjct: 62 LQHGADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
+ KLLL H D + N+DG TPL L
Sbjct: 120 KYEICKLLLQHGAD-PTKKNRDGNTPLDL 147
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
N E+ A + G ++ VK L + + + +STP++ A + +L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
K DK G PLH A S G+ + +LL+ H + + + +TPLH AA G+ +
Sbjct: 65 GADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYE 122
Query: 225 I 225
I
Sbjct: 123 I 123
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 104 LNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
LN FS ACR+G VV++LI + + + TP++LA S GH DI ++
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQK 85
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
+L+ + +++G PLHYA G + + L+ N L NK G P+ A
Sbjct: 86 LLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKA 140
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
D +GFSPLH+A G + ++L+ + + N+ TPLHLAA +G I+ L
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 233 SPASFDRLTTYGETVFHLA 251
A + + +G H A
Sbjct: 90 K-ADINAVNEHGNVPLHYA 107
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 32 ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
+L+ R A +N T LHLAA GH ++V ++ + + + A NE PLH AC
Sbjct: 52 MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFW 110
Query: 85 GNHEVSAFLMEANPTVA 101
G +V+ L+ V+
Sbjct: 111 GQDQVAEDLVANGALVS 127
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 71 NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
N + + L EA G+ E L + + A + VV+ L+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190
+ +D P++ A S GH ++A E+L D F+PLH A++ G
Sbjct: 67 GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHL 216
+ KLLL H D + N+DG TPL L
Sbjct: 125 ICKLLLQHGAD-PTKKNRDGNTPLDL 149
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
N E+ A + G ++ VK L + + + +STP++ A + +L+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
K DK G PLH A S G+ + +LL+ H + + + +TPLH AA G+ +
Sbjct: 67 GADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYE 124
Query: 225 I 225
I
Sbjct: 125 I 125
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
++ N + + L EA G+ E L + + A + VV+
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186
L+ + +D P++ A S GH ++A E+L D F+PLH A++
Sbjct: 65 LLQHGADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAK 122
Query: 187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
G + KLLL H D + N+DG TPL L
Sbjct: 123 GKYEICKLLLQHGAD-PTKKNRDGNTPLDL 151
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
N E+ A + G ++ VK L + + + +STP++ A + +L+
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
K DK G PLH A S G+ + +LL+ H + + + +TPLH AA G+ +
Sbjct: 69 GADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYE 126
Query: 225 I 225
I
Sbjct: 127 I 127
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + +K G TPLHLAA+N ++I+ L + A + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDA 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEY 297
GET HL + + L L HG QD+FG T +++ N E
Sbjct: 79 IGETPLHLVAMYGHLEIVEVL-------LKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 298 IIK 300
+ K
Sbjct: 132 LQK 134
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ + ED V TP++LA H +I E+L D
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
G +PLH + G++ + ++LL H D+ Q +K G T ++ NG
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 124
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DK G +PLH A+ ++ + ++LL + D+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AID 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
G TPLHL A+ G ++I+ L A + +G+T F +++
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAA H+E+V + K + V A + ETPLH
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAM 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
G+ E+ L++ V + + ++AF ++ G+ D+ ++L
Sbjct: 90 YGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
DA T LHL A +GH+E+V + K + V A+++ +T + GN +++ L +
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Query: 97 N 97
N
Sbjct: 136 N 136
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
G + LHYA+ + N + K L+ + ++DG TP+ LAA GR+++ V +L A
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV-VXYLIQQGA 337
Query: 236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC 270
S + + T LA + +N + + F+ C
Sbjct: 338 SVEAVDATDHTARQLAQANNHHN----IVDIFDRC 368
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 206 YNKDGYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVR---FDKYNAF 260
YNK + LH AA N V L+S+ + L G T + D+ +
Sbjct: 195 YNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASA 254
Query: 261 KFLAESFNTCLFHG------QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQ 314
K L E + G + G T LH A N V+Y++ E + ++ +
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 315 TALDIIEQAG 324
T + + Q G
Sbjct: 315 TPIXLAAQEG 324
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 36/186 (19%)
Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSP----------LHYASSIGN 188
D E+TP+ LA+ L R R K G P LH A++ +
Sbjct: 163 DCDENTPLXLAV-----------LARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRD 211
Query: 189 VNMTKLLLNHNK---DLALQYNKDGYTPLHLAAIN-GRVKILVAFL---------SSSPA 235
LN K D+ + +++G T L + A N GR ++ A L A
Sbjct: 212 FGXXVYXLNSTKLKGDIE-ELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFV 295
D G T H A + K+L + QD+ G T + LA + V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK-DKQDEDGKTPIXLAAQEGRIEVV 329
Query: 296 EYIIKE 301
Y+I++
Sbjct: 330 XYLIQQ 335
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
EVR A D N G +PLH A+ +G++ + ++LL + D+ N G TPLHLA
Sbjct: 29 EVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
A ++I+ L A + +G+T F +++
Sbjct: 88 AWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L + D TP++LA GH +I E+L T
Sbjct: 21 AARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGN 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
G +PLH A+ ++ + ++LL H D+ Q +K G T ++ NG
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 124
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL A +N T LHLAA GH+E+V + K ++ A N TPLH A
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG-RTPLHLAAW 89
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+ E+ L++ V + + ++AF ++ G+ D+ ++L
Sbjct: 90 ADHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 227 VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA 286
V L+++ A + +G T HLA + L + N + G T LHLA
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK--NGADVNATGNTGRTPLHLA 87
Query: 287 VLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
+ + VE ++K D+ ++ +TA DI G D A L+KL
Sbjct: 88 AWADHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303
G V H A R + + L E N + +D GN LHLA + + VE+++K T
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 304 LDIYCRNHKNQTALDIIEQAGTND 327
++ RNHK TA D+ G N+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 30 KRILLQ------RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
+R+LL+ +D + +H AAR G ++ + + + ++ +NE PLH A
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEG-NLPLHLAAK 112
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ V FL++ + NH+ +A LA G +VV L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D N LHLAA+ GH+ +V + K V N K +T A G +EV + LM+A
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQA 158
Query: 97 N 97
N
Sbjct: 159 N 159
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 49/227 (21%)
Query: 16 NDKQALINLV---GCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELV----A 68
ND QAL L+ GC + QR A TALH+AA + ++E + + PELV
Sbjct: 14 NDVQALSKLLKFEGCE----VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 69 AENEKLETPLHEACCQGNHEVSAFLMEANPTVATK------------LNHESQSAFSLAC 116
+E + +T LH A N + L+ +V+ + L + + S A
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
G ++V+LLI + +DS+ +T +++ I + + A ++ + + G
Sbjct: 130 CVGSEEIVRLLIEHGADIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG----- 183
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223
+H K L L N G TP LA + G +
Sbjct: 184 --------------------DHLKSLELVPNNQGLTPFKLAGVEGNI 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 18/167 (10%)
Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
+P+ LA ++L+ + G + LH A+ N+ +L+ +L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 204 LQYNK----DGYTPLHLAAINGRVKILVAFLSSSPASFDR------------LTTYGETV 247
+ +G T LH+A IN V ++ A L+ + R L YGE
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
A + L E + QD GNTVLH+ +L+ N F
Sbjct: 125 LSFAACVGSEEIVRLLIE--HGADIRAQDSLGNTVLHILILQPNKTF 169
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCL 271
+PL LAA V+ L L + GET H+A +D A L E+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 272 FH---GQDQFGNTVLHLAVLRKNYQFVEYII 299
F + G T LH+AV+ +N V ++
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALL 95
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 209 DGYTPLHLAAING-------------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
DG+TPL +A+ +G ++ F+ + ++ G T HLA +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
+ +A K L E+ QD G T LH AV + +I+ D+ R H T
Sbjct: 69 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 316 AL 317
L
Sbjct: 127 PL 128
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+TD+ G + LH A++ + K LL + D +Q N G TPLH A + +
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 110
Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
+ D G T LA R + L S + D G + LH
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSALH 162
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 18/206 (8%)
Query: 76 TPLHEACCQG------NHE--------VSAFLMEANPTVATKLNHESQSAFSLACRQGHL 121
TPL A C G N E +S F+ + ++ + + +A LA
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGATALHLAAAYSRS 70
Query: 122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLH 181
D K L+ S + D++ TP++ A+S + + ++ R +G +PL
Sbjct: 71 DAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 182 YASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLT 241
A+ + M + L+N + D+ + G + LH AA V V L + A+ D
Sbjct: 130 LAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQN 187
Query: 242 TYGETVFHLAVRFDKYNAFKFLAESF 267
ET LA R Y K L + F
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHF 213
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G D V++L+ F D + ++P++LA GH +L +T K
Sbjct: 9 AARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-K 65
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDL 202
+PLH A+S G+ N+ ++LL H D+
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADV 93
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 31 RILLQRDASLNTA------LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ 84
RIL+ A T LHLAA++GH TE+ A + TPLH A +
Sbjct: 19 RILMANGAPFTTDWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASE 77
Query: 85 GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVEST 144
G+ + L++ V K + +A A H +VV+LLI + + + T
Sbjct: 78 GHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK-T 135
Query: 145 PIYLAISRGHTDIAREILE 163
++I G+ D+A EIL+
Sbjct: 136 AFDISIDNGNEDLA-EILQ 153
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
TPLHEAC G+ +V L++ V T +++ S A + GH+D+VKLL+
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGY---TPLHLAAINGRVKILVAF 229
D G++PLH A + G++ + +LLL H AL N GY +PLH AA NG V I V
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHK---AL-VNTTGYQNDSPLHDAAKNGHVDI-VKL 94
Query: 230 LSSSPASFDRLTTYG 244
L S AS + + +G
Sbjct: 95 LLSYGASRNAVNIFG 109
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
NH ++ +A +G + V+ L+ Q+ +D TP++ A + GH + +L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
+ T SPLH A+ G+V++ KLLL++
Sbjct: 66 K-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303
G V H A R + + + L E F + + +D GN LHLA + + VE+++K T
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLE-FQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 304 LDIYCRNHKNQTALDIIEQAGTND 327
++ RNHK TA D+ G N+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 30 KRILLQ------RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
+R+LL+ +D + +H AAR G ++ + + + ++ +NE PLH A
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEG-NLPLHLAAK 112
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ V FL++ + NH+ +A LA G +VV L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D N LHLAA+ GH+ +V + K V N K +T A G +EV + LM+A
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQA 158
Query: 97 N 97
N
Sbjct: 159 N 159
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 41 NTALHLAARFGHVELVTEITKLCPELVAA---ENEKLETPLHEACCQGNHEVSAFLMEAN 97
++ LHLA L E+ + +A +N +TPLH A E++ L+ A
Sbjct: 6 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 65
Query: 98 PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDI 157
+ + + LAC QG L V +L +TP +I +
Sbjct: 66 CDPELR-DFRGNTPLHLACEQGCLASVGVLTQSC-----------TTPHLHSILKA---- 109
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
T+ NG + LH AS G + + +LL++ D+ Q +G T LHL
Sbjct: 110 --------------TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL- 154
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
A++ + LV+ L A +R+T G + + L
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 53/174 (30%)
Query: 138 EDSVESTPIYLAISRGHTDIAREIL------EVRPRFAGKTDKNGFSPLHYASSIGNVNM 191
+++++ TP++LA+ +IA +L E+R D G +PLH A G +
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-------DFRGNTPLHLACEQGCLAS 90
Query: 192 TKLLLN-----HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET 246
+L H + N +G+T LHLA+I+G + I+ + L + G
Sbjct: 91 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-----------ELLVSLGAD 139
Query: 247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
V NA E N G T LHLAV +N V ++K
Sbjct: 140 V----------NA----QEPCN----------GRTALHLAVDLQNPDLVSLLLK 169
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 275 QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
+D GN LHLA + + VE+++K T ++ RNHK TA D+ G N+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 30 KRILLQ------RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
+R+LL+ +D + +H AAR G ++ + + + ++ +NE PLH A
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAK 112
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ V FL++ + NH+ +A LA G +VV L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 275 QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
+D GN LHLA + + VE+++K T ++ RNHK TA D+ G N+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 30 KRILLQ------RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
+R+LL+ +D + +H AAR G ++ + + + ++ +NE PLH A
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAK 112
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ V FL++ + NH+ +A LA G +VV L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D N LHLAA+ GH+ +V + K V N K +T A G +EV + LM+A
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQA 158
Query: 97 N 97
N
Sbjct: 159 N 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 275 QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
+D GN LHLA + + VE+++K T ++ RNHK TA D+ G N+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 30 KRILLQ------RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
+R+LL+ +D + N +H AAR G ++ + + + ++ +NE PLH A
Sbjct: 54 RRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAK 112
Query: 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
+G+ V FL++ + NH+ +A LA G +VV L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
D N LHLAA+ GH+ +V + K V N K +T A G +EV + LM+A
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQA 158
Query: 97 N 97
N
Sbjct: 159 N 159
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
++ F+ + ++ GET HLA R+ + +A K L E+ QD G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLH 63
Query: 285 LAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
AV + +I+ D+ R H T L
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 45/235 (19%)
Query: 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
Q D + TALHLAAR+ + + + + +N TPLH A V L+
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG-RTPLHAAVSADAQGVFQILI 78
Query: 95 EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
T H+ + LA R +++ LIN H
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-----------------------SH 115
Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPL 214
D+ D G S LH+A+++ NV+ +LL + + +Q N++ TPL
Sbjct: 116 ADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-ETPL 162
Query: 215 HLAAINGR---VKILVAFLSSSPAS--FDRL--TTYGETVFHLAVR-FDKYNAFK 261
LAA G K+L+ ++ + DRL E + H VR D+YN +
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+TD+ G + LH A+ + K LL + D +Q N G TPLH A + +
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 78
Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
+ D G T LA R + L S + D G + LH
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSALH 130
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 31/181 (17%)
Query: 70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
+N +TPLH A E++ L+ A + + + LAC QG L V +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV 189
+TP +I + T+ NG + LH AS G +
Sbjct: 100 SC-----------TTPHLHSILKA------------------TNYNGHTCLHLASIHGYL 130
Query: 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
+ +LL++ D+ Q +G T LHL A++ + LV+ L A +R+T G + +
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHL-AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 189
Query: 250 L 250
L
Sbjct: 190 L 190
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 45/170 (26%)
Query: 138 EDSVESTPIYLAISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
+++++ TP++LA+ +IA +L P D G +PLH A G + +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVL 97
Query: 196 LN-----HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
H + N +G+T LHLA+I+G + I+ + L + G V
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-----------ELLVSLGADV--- 143
Query: 251 AVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
NA E N G T LHLAV +N V ++K
Sbjct: 144 -------NA----QEPCN----------GRTALHLAVDLQNPDLVSLLLK 172
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 100 VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159
+ K + Q+A LA G +DVVK L+ + ++D ST + A GH +IA
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEIAG 233
Query: 160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
+L V TD++G + L A G + +L
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI------NGRVKIL 226
D NG + LHY+ S N + + LL+ + N+ GY+P+ L A+ + +L
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 227 VAF-LSSSPASFDRLTTYGETVFHLAV---RFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
F L + A + + G+T LAV R D A N QD G+T
Sbjct: 168 QLFRLGNINA---KASQAGQTALMLAVSHGRVDVVKALLACEADVNV-----QDDDGSTA 219
Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332
L A + + ++ DI + TAL + AG ++ A+ L
Sbjct: 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+ + +KDGYTPLHLAA G ++I+ L + A +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDK 66
Query: 243 YGETVFHLAV 252
+G+T F +++
Sbjct: 67 FGKTAFDISI 76
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DK+G++PLH A+ G++ + ++LL D+ Q +
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-D 65
Query: 208 KDGYTPLHLAAING 221
K G T ++ NG
Sbjct: 66 KFGKTAFDISIDNG 79
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 31 RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
RIL+ A +N T LHLAAR GH+E+V + K + V A+++ +T +
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISID 77
Query: 84 QGNHEVSAFLMEA 96
GN +++ L +A
Sbjct: 78 NGNEDLAEILQKA 90
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM V K + + + LA R+GHL++V++L+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILE 163
+ +D T ++I G+ D+A EIL+
Sbjct: 61 VN-AQDKFGKTAFDISIDNGNEDLA-EILQ 88
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+A + +K+G TPLHLAA NG +++ V L + A +
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEV-VKLLLEAGADVNAQDK 70
Query: 243 YGETVFHLAV 252
+G+T F +++
Sbjct: 71 FGKTAFDISI 80
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
L +R D IL DKNG +PLH A+ G++ + KLLL D+ Q +
Sbjct: 11 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-D 69
Query: 208 KDGYTPLHLAAING 221
K G T ++ NG
Sbjct: 70 KFGKTAFDISIDNG 83
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM VA K + + LA R GHL+VVKLL+
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILE 163
+ +D T ++I G+ D+A EIL+
Sbjct: 65 VN-AQDKFGKTAFDISIDNGNEDLA-EILQ 92
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
VAA+++ TPLH A G+ EV L+EA V + + ++AF ++ G+ D+ ++
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLAEI 90
Query: 127 L 127
L
Sbjct: 91 L 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
A+ G + ++L+ + D+A + +K+G TPLHLAA NG +++ V L + A
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEV-VKLLLEAGADVXAQDK 88
Query: 243 YGETVFHLAV 252
+G+T F +++
Sbjct: 89 FGKTAFDISI 98
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
A G D R ++ A K DKNG +PLH A+ G++ + KLLL D+ Q +K
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DK 88
Query: 209 DGYTPLHLAAING 221
G T ++ NG
Sbjct: 89 FGKTAFDISIDNG 101
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
L L EA G + LM VA K + + LA R GHL+VVKLL+
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILE 163
+ +D T ++I G+ D+A EIL+
Sbjct: 83 VX-AQDKFGKTAFDISIDNGNEDLA-EILQ 110
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
VAA+++ TPLH A G+ EV L+EA V + + ++AF ++ G+ D+ ++
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEI 108
Query: 127 L 127
L
Sbjct: 109 L 109
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFL 93
+D + +T LHLAAR GH+E+V + + + V A+++ +T + GN +++ L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
+P+HEA G H++S + + + + S AC GHL VK+L+
Sbjct: 5 SPMHEAAIHG-HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG---- 59
Query: 136 FEEDSVES---TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192
+ + V + TP++ A G D +L+ ++D SP+H A+ G+V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECV 117
Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
L+ + ++ + + G TPL+LA N + + L S
Sbjct: 118 NSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESG 157
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
+P+HEA G H++S + + + + S AC GHL VK+L+
Sbjct: 61 SPMHEAAIHG-HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG---- 115
Query: 136 FEEDSVES---TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192
+ + V + TP++ A G D +L+ ++D SP+H A+ G+V
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECV 173
Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
L+ + ++ + + G TPL+LA N + + L S
Sbjct: 174 NSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESG 213
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
++ F+ + ++ GET HLA R+ + +A K L E+ QD G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXI--QDNMGRTPLH 60
Query: 285 LAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
AV + +++ D+ R H T L
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPL 93
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
Q D + TALHLAAR+ + + + + +N TPLH A V L+
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMG-RTPLHAAVSADAQGVFQILL 75
Query: 95 EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
T H+ + LA R +++ LIN H
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINS-----------------------H 112
Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPL 214
D+ D G S LH+A+++ NV+ +LL + + +Q NK+ TPL
Sbjct: 113 ADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKE-ETPL 159
Query: 215 HLAAING 221
LAA G
Sbjct: 160 FLAAREG 166
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+TD+ G + LH A+ + K LL + D +Q N G TPLH A + L
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLHAAVSADAQGVFQILL 75
Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK 290
+ D G T LA R + L S + D G + LH A
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADV--NAVDDLGKSALHWAAAVN 133
Query: 291 NYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLF 336
N ++K + +N+K +T L + + G+ + A L F
Sbjct: 134 NVDAAVVLLKNGA-NKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G LD +K+L+ + DS S PI+LAI GH+ + L + D
Sbjct: 83 AARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHR-DA 139
Query: 175 NGFSPLHYASSIGNVNMTKLLLNH 198
+G +PL A G N+ +L H
Sbjct: 140 SGLTPLELARQRGAQNLMDILQGH 163
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G LD +K+L+ + DS S PI+LAI GH+ + L + D
Sbjct: 81 AARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHR-DA 137
Query: 175 NGFSPLHYASSIGNVNMTKLLLNH 198
+G +PL A G N+ +L H
Sbjct: 138 SGLTPLELARQRGAQNLMDILQGH 161
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 93 LMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR 152
+ + T ++ S S +++A ++ +V L+N L E+ P++ A +
Sbjct: 18 FLSSKDTFKADVHGHSASYYAIA--DNNVRLVCTLLNAGALKNLLENEF---PLHQAATL 72
Query: 153 GHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
T I + +L F+G + D G + L+YA GN KL + N L Y K
Sbjct: 73 EDTKIVKILL-----FSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXF-YGK 126
Query: 209 DGY-TPLHLAAINGRVKILVAFLSSSPASFD 238
G+ T + A V I+ FLS P++FD
Sbjct: 127 TGWKTSFYHAVXLNDVSIVSYFLSEIPSTFD 157
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 75 ETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
E PLH+A + ++ L+ + ++ + + +A A G+ VKL + ++W +
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
Query: 135 EFEEDSVESTPIYLAISRGHTDIAREIL-EVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
F + T Y A+ I L E+ F S +H G+V+
Sbjct: 122 XFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAI---LLSCIHITIKNGHVDXXI 178
Query: 194 LLLNH 198
LLL++
Sbjct: 179 LLLDY 183
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
TALH A GH E+V + + + AA+++ TPLH A N +V FL+E+ V
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 102 TKLNHESQSA 111
+ Q+A
Sbjct: 131 AMTYSDMQTA 140
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
G + LH A G+ + K L+ ++ + DG+TPLH AA V++ + S A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 236 SF 237
F
Sbjct: 129 VF 130
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 177 FSPLHY---ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
F+PL +S G ++ + ++ D +L N +G T LH A G +I V FL
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEI-VKFLVQF 92
Query: 234 PASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
+ + + G T H A + KFL ES
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
TALH A GH E+V + + + AA+++ TPLH A N +V FL+E+ V
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 102 TKLNHESQSA 111
+ Q+A
Sbjct: 131 AMTYSDMQTA 140
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
G + LH A G+ + K L+ ++ + DG+TPLH AA V++ + S A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 236 SF 237
F
Sbjct: 129 VF 130
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 177 FSPLHYA----SSI-GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
F+PL A SS+ G ++ + ++ D +L N +G T LH A G +I V FL
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEI-VKFLV 90
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
+ + + G T H A + KFL ES
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDL 202
+TP+ LA + +++ D +G + LH+A+++ N +LL H+ +
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 203 ALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
Q +KD TPL LAA G + A L +
Sbjct: 178 DAQDDKD-ETPLFLAAREGSYEASKALLDN 206
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G LD +K+L+ + D + PI+LA+ GHT + L + D
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV-SFLAAESDLH-RRDA 131
Query: 175 NGFSPLHYASSIGNVNMTKLLLNH 198
G +PL A G ++ +L H
Sbjct: 132 RGLTPLELALQRGAQDLVDILQGH 155
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
A R G LD +K+L+ + D + PI+LA+ GHT + L + D
Sbjct: 81 AARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV-SFLAAESDLH-RRDA 137
Query: 175 NGFSPLHYASSIGNVNMTKLLLNH 198
G +PL A G ++ +L H
Sbjct: 138 RGLTPLELALQRGAQDLVDILQGH 161
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
+ D G PLH+A+ +G+ + L L DL + + +G PL +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
+ D G PLH+A+ +G+ + L L DL + + +G PL +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
+ D G PLH+A+ +G+ + L L DL + + +G PL +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 279 GNTVLHLAVLRKNYQFVEYIIKETV----LDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
G+T LHLAV+ ++ F+++++ + LD+ +N QTAL + G +A++++K
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILG---EASTVEK 63
Query: 335 LFKTAGNI 342
L+ +
Sbjct: 64 LYAAGAGV 71
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 30/226 (13%)
Query: 12 AIVRNDKQALINLVGCS--NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAA 69
A++ + L L+G S ++ + LQ D TALHLAA G V ++ ++ A
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLG-QTALHLAAILGEASTVEKLYAAGAGVLVA 74
Query: 70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
E T LH AC H + L++ P+ H + +
Sbjct: 75 ERGG-HTALHLACRVRAHTCACVLLQPRPS------HPRDA------------------S 109
Query: 130 QSWLMEFEEDSVESTPIYLAI-SRGHTDIAREILEVRPRFAGKTDK-NGFSPLHYASSIG 187
++L + ++ + +++ A+ S+ + + E + R + + +G +PLH A
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169
Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
+ M +LL + DL G TPLHLA +L L +
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 279 GNTVLHLAVLRKNYQFVEYIIKETV----LDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
G+T LHLAV+ ++ F+++++ + LD+ +N QTAL + G +A++++K
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILG---EASTVEK 63
Query: 335 LFKTAGNI 342
L+ +
Sbjct: 64 LYAAGAGV 71
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 17/222 (7%)
Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
L LQ N G T LHLAAI G V L ++ A G T HLA R +
Sbjct: 38 LDLQ-NDLGQTALHLAAILGEAST-VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC 95
Query: 262 FLA--------ESFNTCLFHGQDQFGNTVLHLAVL--RKNYQFVEYIIKET-VLDIYCRN 310
L ++ +T L QD +T A + + N + E E L + N
Sbjct: 96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 311 HKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSS 370
+ T L + A + DA ++ L ++ PE + + L +E+ V
Sbjct: 156 YDGHTPLHV---AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 371 STSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPK 412
DP+ M+ R+ S + P+L + LL H +P+
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILAR-LLRAHGAPEPE 253
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 30/226 (13%)
Query: 12 AIVRNDKQALINLVGCS--NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAA 69
A++ + L L+G S ++ + LQ D TALHLAA G V ++ ++ A
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLG-QTALHLAAILGEASTVEKLYAAGAGVLVA 74
Query: 70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
E T LH AC H + L++ P+ H + +
Sbjct: 75 ERGG-HTALHLACRVRAHTCACVLLQPRPS------HPRDA------------------S 109
Query: 130 QSWLMEFEEDSVESTPIYLAI-SRGHTDIAREILEVRPRFAGKTDK-NGFSPLHYASSIG 187
++L + ++ + +++ A+ S+ + + E + R + + +G +PLH A
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169
Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
+ M +LL + DL G TPLHLA +L L +
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+ ++ G + LH A N ++ L+ ++ + G+TPLH AA I +A +
Sbjct: 49 QPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALV 107
Query: 231 SSSPASFDRLTTYGETVF 248
A F + G T F
Sbjct: 108 QHGAAIFATTLSDGATAF 125
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 36 RDASLNTALHL--AARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFL 93
R A LN + L AA G +E+V + K + + NE+ T LH A C N+ + FL
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFL 73
Query: 94 MEANPTVATKLNH 106
+ A V + +H
Sbjct: 74 ITAGANVNSPDSH 86
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+T + G PLHYA+ G + + + LL D+ +K TPL A G V + L
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLL 93
Query: 231 S 231
S
Sbjct: 94 S 94
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
+T + G PLHYA+ G + + + LL D+ +K TPL A G V + L
Sbjct: 30 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLL 88
Query: 231 S 231
S
Sbjct: 89 S 89
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVES--TPIYLAISRGHTDIAREILEVRPRFA 169
F A + G LD VK + + E ++E P++ A G +I E L ++
Sbjct: 6 FMWALKNGDLDEVKDYVAKG---EDVNRTLEGGRKPLHYAADCGQLEIL-EFLLLKGADI 61
Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV 227
DK+ +PL A G+V+ KLLL+ D ++ DG T L A N +K L+
Sbjct: 62 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALE-ATDNQAIKALL 117
>pdb|1GX6|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Utp And
Manganese
Length = 531
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAXTRYSAPPGDPPQPEYDLEL 362
>pdb|1GX5|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Gtp And
Manganese
Length = 536
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAXTRYSAPPGDPPQPEYDLEL 362
>pdb|1CSJ|A Chain A, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
pdb|1CSJ|B Chain B, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
Length = 531
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAXTRYSAPPGDPPQPEYDLEL 362
>pdb|1YVF|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00729145
pdb|1Z4U|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00799585
Length = 577
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 324 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 363
>pdb|2DXS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
pdb|2DXS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
Length = 552
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|1OS5|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Novel Non-Competitive Inhibitor
Length = 576
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|3FRZ|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With
Length = 576
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|2BRK|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 1)
pdb|2BRL|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 2)
pdb|2WHO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WHO|B Chain B, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WRM|A Chain A, Identification Of Novel Allosteric Inhibitors Of Hepatitis
C Virus Ns5b Polymerase Thumb Domain (Site Ii) By
Structure-Based Design
Length = 536
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|2HAI|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With Novel Class Of Dihydropyrone-Containing Inhibitor
Length = 576
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|3MF5|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
pdb|3MF5|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
Length = 570
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|2WCX|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase In
Complex With Thienopyrrole-Based Finger-Loop Inhibitors
pdb|2XWY|A Chain A, Structure Of Mk-3281, A Potent Non-Nucleoside Finger-Loop
Inhibitor, In Complex With The Hepatitis C Virus Ns5b
Polymerase
Length = 537
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 324 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 363
>pdb|3CIZ|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CIZ|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ2|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ2|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3FQK|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3FQK|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3G86|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3G86|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3H59|A Chain A, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H59|B Chain B, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H5S|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5S|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5U|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H5U|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H98|A Chain A, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
pdb|3H98|B Chain B, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
Length = 576
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 329 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 368
>pdb|2GIQ|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIQ|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIR|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
pdb|2GIR|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
Length = 568
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 329 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 368
>pdb|2AWZ|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AWZ|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AX0|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX0|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX1|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
pdb|2AX1|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
Length = 580
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|2ZKU|A Chain A, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|B Chain B, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|C Chain C, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|D Chain D, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|3PHE|A Chain A, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|B Chain B, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|C Chain C, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|D Chain D, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3UDL|A Chain A, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|B Chain B, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|C Chain C, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|D Chain D, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
Length = 576
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 329 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 368
>pdb|3BR9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BR9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D28|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D28|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D5M|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D5M|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3GYN|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3GYN|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3H2L|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3H2L|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
Length = 578
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|2D3U|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3U|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D41|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
pdb|2D41|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
Length = 570
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
Hepatitis C Virus
pdb|2GC8|A Chain A, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2GC8|B Chain B, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2QE2|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE2|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|C Chain C, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|D Chain D, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|3VQS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|C Chain C, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|D Chain D, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
Length = 578
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|3HHK|A Chain A, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
pdb|3HHK|B Chain B, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
Length = 563
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 323 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 362
>pdb|1NHU|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHU|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
Length = 578
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 319 IIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
I E AGT +DA SL+ + +P PP E L L
Sbjct: 331 ICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLEL 370
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 315 TALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTS 373
T LD+ E GTN S+ ++ G P + P A E+ + ++ + LV + S S
Sbjct: 57 TELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGEL-LVGILGSLDS 114
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 315 TALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTS 373
T LD+ E GTN S+ ++ G P + P A E+ + ++ + LV + S S
Sbjct: 57 TELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGEL-LVGILGSLDS 114
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 315 TALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTS 373
T LD+ E GTN S+ ++ G P + P A E+ + ++ + LV + S S
Sbjct: 57 TELDVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGEL-LVGILGSLDS 114
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKD-------GYTPLHLAAINGRV 223
G S LH A ++ KLL+ + D+ L+ + K G PL LAA +
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 224 KILVAFLSS--SPASFDRLTTYGETVFHLAV 252
++ L + PAS + + G TV H V
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALV 193
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKD-------GYTPLHLAAINGRV 223
G S LH A ++ KLL+ + D+ L+ + K G PL LAA +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 224 KILVAFLSS--SPASFDRLTTYGETVFHLAV 252
++ L + PAS + + G TV H V
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,451,011
Number of Sequences: 62578
Number of extensions: 666397
Number of successful extensions: 2510
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 420
length of query: 669
length of database: 14,973,337
effective HSP length: 105
effective length of query: 564
effective length of database: 8,402,647
effective search space: 4739092908
effective search space used: 4739092908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)