Query 005931
Match_columns 669
No_of_seqs 530 out of 3375
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 6.8E-45 2.3E-49 396.8 39.7 327 4-345 14-372 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-44 4.5E-49 394.5 39.1 313 9-332 51-396 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-39 5E-44 342.1 33.8 294 37-345 22-329 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 3.5E-39 1.2E-43 329.5 31.7 267 39-311 4-284 (285)
5 3utm_A Tankyrase-1; tankyrase, 100.0 3.2E-39 1.1E-43 340.4 32.0 304 7-340 26-332 (351)
6 4g8k_A 2-5A-dependent ribonucl 100.0 4.2E-39 1.5E-43 338.5 32.6 290 7-309 27-330 (337)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-37 4.8E-42 317.6 33.0 263 7-276 7-283 (285)
8 3d9h_A CDNA FLJ77766, highly s 100.0 2.7E-37 9.2E-42 316.9 24.7 260 37-307 12-281 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 4.1E-38 1.4E-42 335.8 17.7 287 5-299 37-366 (373)
10 2xai_A ASB-9, ankyrin repeat a 100.0 9.8E-37 3.4E-41 308.5 20.8 217 39-265 2-218 (261)
11 3ljn_A Hypothetical protein; a 100.0 2.7E-37 9.4E-42 328.3 17.0 260 33-299 13-309 (364)
12 2fo1_E LIN-12 protein; beta-ba 100.0 3.4E-37 1.2E-41 328.6 17.6 275 43-332 69-365 (373)
13 2xai_A ASB-9, ankyrin repeat a 100.0 2.1E-36 7.3E-41 306.1 21.8 249 73-332 2-257 (261)
14 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-35 3.8E-40 304.9 24.7 243 71-322 12-264 (285)
15 1oy3_D Transcription factor in 100.0 6E-36 2.1E-40 305.5 21.9 267 33-327 2-272 (282)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 9.6E-36 3.3E-40 299.7 22.4 241 33-299 3-243 (253)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-35 3.6E-40 299.4 22.0 216 47-266 30-245 (253)
18 3utm_A Tankyrase-1; tankyrase, 100.0 3.5E-35 1.2E-39 309.4 26.0 286 33-342 17-305 (351)
19 3ljn_A Hypothetical protein; a 100.0 5.2E-36 1.8E-40 318.4 17.2 256 67-331 13-307 (364)
20 3b7b_A Euchromatic histone-lys 100.0 5.1E-34 1.7E-38 283.7 26.6 222 35-296 6-227 (237)
21 3b7b_A Euchromatic histone-lys 100.0 6.2E-34 2.1E-38 283.1 25.6 220 4-230 11-230 (237)
22 1oy3_D Transcription factor in 100.0 2.1E-34 7.1E-39 294.0 22.3 260 67-356 2-264 (282)
23 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-34 5E-39 288.1 20.4 232 33-300 2-237 (241)
24 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-34 9.4E-39 286.2 21.5 221 68-329 3-232 (241)
25 3aji_A 26S proteasome non-ATPa 100.0 1.6E-33 5.5E-38 278.9 24.8 222 38-299 4-225 (231)
26 3aji_A 26S proteasome non-ATPa 100.0 1.6E-33 5.5E-38 278.9 24.6 218 7-230 8-225 (231)
27 2dzn_A Probable 26S proteasome 100.0 1.3E-33 4.6E-38 278.8 22.7 221 40-299 2-225 (228)
28 2dzn_A Probable 26S proteasome 100.0 2.3E-33 7.9E-38 277.1 23.8 215 74-323 2-218 (228)
29 3eu9_A Huntingtin-interacting 100.0 1E-32 3.5E-37 274.1 24.2 226 34-299 3-230 (240)
30 1s70_B 130 kDa myosin-binding 100.0 2.7E-33 9.1E-38 288.8 19.8 277 11-340 4-288 (299)
31 1s70_B 130 kDa myosin-binding 100.0 1.3E-33 4.3E-38 291.2 17.2 243 7-299 42-284 (299)
32 3eu9_A Huntingtin-interacting 100.0 2.2E-32 7.5E-37 271.7 25.4 220 8-232 12-232 (240)
33 4b93_B Ankyrin repeat domain-c 100.0 1.5E-33 5.2E-38 286.1 13.9 216 35-255 6-229 (269)
34 3kea_A K1L; tropism, ANK repea 100.0 1.2E-32 4.2E-37 282.2 18.9 208 12-230 6-215 (285)
35 2f8y_A Notch homolog 1, transl 100.0 4.1E-32 1.4E-36 267.3 21.1 210 51-299 2-211 (223)
36 3kea_A K1L; tropism, ANK repea 100.0 2.6E-32 8.8E-37 279.8 19.6 249 50-320 9-259 (285)
37 4b93_B Ankyrin repeat domain-c 100.0 8.9E-33 3.1E-37 280.4 15.8 223 69-324 6-229 (269)
38 2f8y_A Notch homolog 1, transl 100.0 1.3E-31 4.5E-36 263.6 20.5 211 16-231 2-212 (223)
39 1sw6_A Regulatory protein SWI6 100.0 1.1E-33 3.8E-38 295.9 5.5 263 38-323 21-326 (327)
40 1ikn_D Protein (I-kappa-B-alph 100.0 1E-31 3.6E-36 267.1 9.1 220 35-286 3-226 (236)
41 1sw6_A Regulatory protein SWI6 100.0 1.8E-31 6.2E-36 279.1 9.8 252 18-290 32-327 (327)
42 2rfa_A Transient receptor pote 100.0 2.5E-29 8.5E-34 249.0 23.4 205 39-268 2-221 (232)
43 3hra_A Ankyrin repeat family p 100.0 3.9E-29 1.3E-33 241.7 22.6 192 38-231 3-199 (201)
44 2rfa_A Transient receptor pote 100.0 7.4E-29 2.5E-33 245.6 22.5 198 73-302 2-220 (232)
45 3hra_A Ankyrin repeat family p 100.0 1.1E-28 3.7E-33 238.6 22.1 189 141-332 4-197 (201)
46 1ikn_D Protein (I-kappa-B-alph 100.0 7.3E-30 2.5E-34 253.7 12.9 214 70-322 4-228 (236)
47 2pnn_A Transient receptor pote 100.0 6.5E-29 2.2E-33 252.6 15.0 226 33-282 6-270 (273)
48 2pnn_A Transient receptor pote 100.0 1.5E-28 5.3E-33 249.8 17.0 224 67-317 6-271 (273)
49 2etb_A Transient receptor pote 100.0 1.7E-28 5.8E-33 247.0 16.9 204 39-267 1-244 (256)
50 2etb_A Transient receptor pote 100.0 2.2E-28 7.5E-33 246.2 17.0 203 73-302 1-244 (256)
51 4gpm_A Engineered protein OR26 100.0 3E-27 1E-31 221.8 19.8 159 42-204 6-164 (169)
52 4gpm_A Engineered protein OR26 99.9 7.1E-27 2.4E-31 219.3 20.0 159 144-308 6-164 (169)
53 3jxi_A Vanilloid receptor-rela 99.9 3.4E-27 1.2E-31 237.9 16.0 206 71-303 2-249 (260)
54 3jxi_A Vanilloid receptor-rela 99.9 2.4E-27 8.2E-32 239.1 14.3 207 37-267 2-248 (260)
55 2aja_A Ankyrin repeat family p 99.9 4.2E-29 1.4E-33 264.3 -0.1 256 37-329 89-365 (376)
56 3v30_A DNA-binding protein rfx 99.9 4.4E-26 1.5E-30 214.6 17.4 170 142-316 2-171 (172)
57 2rfm_A Putative ankyrin repeat 99.9 7.5E-26 2.6E-30 217.2 17.9 164 31-198 26-189 (192)
58 4hbd_A KN motif and ankyrin re 99.9 2.3E-26 8E-31 234.2 14.4 190 76-267 78-273 (276)
59 3v30_A DNA-binding protein rfx 99.9 7.6E-26 2.6E-30 213.0 16.9 170 40-213 2-171 (172)
60 4hbd_A KN motif and ankyrin re 99.9 4.7E-26 1.6E-30 232.0 15.1 195 38-235 74-275 (276)
61 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.4E-25 4.8E-30 208.8 16.3 159 39-201 4-162 (162)
62 3v31_A Ankyrin repeat family A 99.9 5.8E-25 2E-29 205.9 16.8 160 39-202 2-161 (167)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-24 4.7E-29 203.9 18.8 159 37-199 11-169 (169)
64 2rfm_A Putative ankyrin repeat 99.9 7.1E-25 2.4E-29 210.4 16.1 158 170-332 29-186 (192)
65 3v31_A Ankyrin repeat family A 99.9 2.7E-24 9.2E-29 201.3 18.8 153 142-299 3-155 (167)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.5E-24 5.2E-29 201.8 16.2 161 1-166 1-161 (162)
67 2vge_A RELA-associated inhibit 99.9 2.2E-27 7.6E-32 234.7 -4.5 192 33-230 14-208 (229)
68 3twr_A Tankyrase-2; ankyrin re 99.9 1.5E-24 5.2E-29 202.6 14.8 160 37-200 5-164 (165)
69 3f6q_A Integrin-linked protein 99.9 2.6E-24 8.7E-29 204.0 15.9 167 142-313 5-171 (179)
70 3f6q_A Integrin-linked protein 99.9 2.9E-24 9.9E-29 203.7 15.8 165 38-205 3-167 (179)
71 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.2E-23 4E-28 197.6 19.5 153 142-299 14-166 (169)
72 1awc_B Protein (GA binding pro 99.9 1.1E-23 3.8E-28 194.2 18.2 149 41-228 3-151 (153)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.8E-24 3E-28 195.3 17.4 153 142-300 2-154 (156)
74 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.5E-24 2.6E-28 195.8 16.8 154 40-198 2-155 (156)
75 1awc_B Protein (GA binding pro 99.9 1.5E-23 5E-28 193.3 18.6 149 144-298 4-152 (153)
76 2vge_A RELA-associated inhibit 99.9 7.7E-27 2.6E-31 230.8 -4.4 160 56-218 1-164 (229)
77 3twr_A Tankyrase-2; ankyrin re 99.9 4.8E-24 1.6E-28 199.2 13.7 153 142-299 8-160 (165)
78 2aja_A Ankyrin repeat family p 99.9 8.4E-26 2.9E-30 239.0 0.5 253 7-299 94-369 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.9E-24 3.1E-28 210.3 8.2 177 141-324 4-192 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.2E-23 4E-28 209.5 6.7 161 38-203 3-166 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-22 6E-27 186.8 11.0 145 170-320 6-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 1.9E-21 6.4E-26 175.4 12.5 130 169-304 5-135 (136)
83 1d9s_A Cyclin-dependent kinase 99.9 1.6E-21 5.6E-26 175.8 11.7 130 32-165 4-134 (136)
84 3t8k_A Uncharacterized protein 99.9 9.7E-22 3.3E-26 187.3 9.3 158 178-340 8-181 (186)
85 3t8k_A Uncharacterized protein 99.8 1.9E-21 6.5E-26 185.3 9.9 149 8-163 9-175 (186)
86 1bi7_B P16INK4A, MTS1, multipl 99.8 4.5E-21 1.5E-25 177.3 11.0 141 36-215 8-149 (156)
87 2jab_A H10-2-G3; HER2, darpin, 99.8 2.3E-20 7.8E-25 168.2 14.0 125 37-164 11-135 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.8 4.5E-20 1.5E-24 163.2 15.2 125 175-304 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.8 2.4E-20 8.1E-25 168.2 13.5 125 172-300 10-134 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.8 5.7E-20 2E-24 162.5 15.6 124 39-165 1-124 (126)
91 3ui2_A Signal recognition part 99.8 1.7E-20 5.7E-25 187.2 9.4 144 37-201 42-185 (244)
92 3deo_A Signal recognition part 99.8 2.5E-20 8.6E-25 177.2 9.9 141 37-198 41-181 (183)
93 3ehr_A Osteoclast-stimulating 99.8 4.1E-20 1.4E-24 181.4 8.9 138 173-314 70-207 (222)
94 3ui2_A Signal recognition part 99.8 7.5E-21 2.6E-25 189.7 1.7 138 142-301 45-182 (244)
95 3c5r_A BARD-1, BRCA1-associate 99.8 8.7E-20 3E-24 164.5 8.1 122 173-298 7-128 (137)
96 3c5r_A BARD-1, BRCA1-associate 99.8 7.2E-20 2.5E-24 165.1 7.1 123 35-160 5-127 (137)
97 3aaa_C Myotrophin, protein V-1 99.8 4.7E-19 1.6E-23 156.5 9.9 111 37-150 4-114 (123)
98 2b0o_E UPLC1; arfgap, structur 99.8 8.6E-19 2.9E-23 180.2 13.1 142 175-326 150-299 (301)
99 2b0o_E UPLC1; arfgap, structur 99.8 8.9E-19 3E-23 180.1 13.2 142 73-223 150-299 (301)
100 3deo_A Signal recognition part 99.8 5.4E-19 1.8E-23 168.0 10.4 104 142-265 76-180 (183)
101 3aaa_C Myotrophin, protein V-1 99.8 9.1E-19 3.1E-23 154.7 10.4 108 209-320 6-113 (123)
102 1dcq_A PYK2-associated protein 99.8 1E-17 3.5E-22 170.2 18.1 124 176-302 130-261 (278)
103 3ehr_A Osteoclast-stimulating 99.8 4.3E-19 1.5E-23 174.1 7.5 130 37-203 70-200 (222)
104 1dcq_A PYK2-associated protein 99.8 4.3E-18 1.5E-22 173.0 13.2 193 70-268 62-262 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.7 1.1E-17 3.7E-22 139.9 11.3 92 39-132 1-92 (93)
106 3jue_A Arfgap with coiled-coil 99.7 2.2E-17 7.5E-22 173.8 14.5 147 173-323 196-347 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.7 4.6E-17 1.6E-21 179.6 14.2 139 37-185 129-276 (497)
108 3jue_A Arfgap with coiled-coil 99.7 5E-17 1.7E-21 171.1 13.6 123 40-165 199-324 (368)
109 3lvq_E ARF-GAP with SH3 domain 99.7 8E-17 2.7E-21 177.7 14.6 131 176-310 132-270 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.7 2.1E-16 7.2E-21 132.0 11.9 88 209-299 1-88 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.7 6.1E-17 2.1E-21 141.0 8.9 108 206-317 5-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 7.9E-17 2.7E-21 140.3 7.9 108 35-145 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 1.8E-15 6.3E-20 130.6 10.2 95 31-127 15-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.5 3.1E-14 1.1E-18 122.8 9.8 89 207-298 21-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 72.6 8.1 0.00028 39.3 7.9 90 6-95 38-130 (351)
116 4ev6_A Magnesium transport pro 67.8 14 0.00047 37.4 8.3 20 556-575 282-301 (339)
117 3k49_A MRNA-binding protein PU 61.3 37 0.0013 34.6 10.2 88 7-94 44-134 (369)
118 3mkq_B Coatomer subunit alpha; 59.1 54 0.0019 29.5 9.6 133 4-164 7-140 (177)
119 3gvo_A Pumilio 2, pumilio homo 57.4 15 0.00052 37.2 6.4 94 35-128 32-129 (351)
120 2knc_B Integrin beta-3; transm 54.5 11 0.00038 29.0 3.6 40 584-623 10-49 (79)
121 2iub_A CORA, divalent cation t 36.5 56 0.0019 33.1 6.7 20 556-575 306-325 (363)
122 3k49_A MRNA-binding protein PU 32.9 61 0.0021 32.9 6.3 94 35-128 37-134 (369)
123 3mkq_B Coatomer subunit alpha; 24.0 2.8E+02 0.0095 24.7 8.2 54 41-99 9-62 (177)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-45 Score=396.77 Aligned_cols=327 Identities=24% Similarity=0.333 Sum_probs=214.0
Q ss_pred ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931 4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83 (669)
Q Consensus 4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~ 83 (669)
+.++ |+.|+..|+.+.++.|++ . +..++.++..|.||||+||..|+.++|++|++.+++ ++.++..|.||||+|+.
T Consensus 14 g~t~-L~~Aa~~g~~~~v~~Ll~-~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 14 GLTP-LHVASFMGHLPIVKNLLQ-R-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp -CCH-HHHHHHHTCHHHHHHHHH-T-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHH
T ss_pred CCCH-HHHHHHCCCHHHHHHHHH-c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHH
Confidence 4455 888888888888888887 2 244566677778888888888888888888887776 66777777888888888
Q ss_pred cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163 (669)
Q Consensus 84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 163 (669)
.|+.+++++|+++|+++... +..|.||||+|+..|+.+++++|++.+.... ..+..|.||||.|+..|+.+++++|++
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 88888888888777765443 5666666666666666666666666554433 233344555555555555555555555
Q ss_pred cCCcc--------------------------------cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCC
Q 005931 164 VRPRF--------------------------------AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGY 211 (669)
Q Consensus 164 ~~~~~--------------------------------~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~ 211 (669)
.+.+. ++..+.+|.||||+|+..|+.+++++|+++|++++.. +..|.
T Consensus 168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~ 246 (437)
T 1n11_A 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGV 246 (437)
T ss_dssp TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Confidence 44432 1333444455555555555555555555555554443 55566
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC
Q 005931 212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291 (669)
Q Consensus 212 tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~ 291 (669)
||||+|+..|+.++++.|+.. +.+++..+..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSC
T ss_pred CHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCc
Confidence 666666666666666655543 355666667777777777777777777777765 55667777778888888888888
Q ss_pred HHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCC
Q 005931 292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSP 345 (669)
Q Consensus 292 ~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~ 345 (669)
.+++++|+ +.|+|++.+|..|+||||+|+..++.+ ++++|...|+....
T Consensus 324 ~~~v~~Ll-~~gad~n~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 324 IKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp SHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCC
T ss_pred HHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHCChHH----HHHHHHHCcCCCCC
Confidence 88888777 557778888888888888887777544 34445556655443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-44 Score=394.52 Aligned_cols=313 Identities=24% Similarity=0.324 Sum_probs=249.8
Q ss_pred HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931 9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE 88 (669)
Q Consensus 9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e 88 (669)
|+.|+..|+.+.++.|++ . +..++.++..|.||||+||..|+.++|++|++.+++ ++..+..|.||||+|+..|+.+
T Consensus 51 L~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~ 127 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQ-N-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVE 127 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH-H-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHh-C-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHH
Confidence 777777777777777776 2 244566677777777777777777777777777665 4555555555555555555555
Q ss_pred HHHHHHhhC---------------------------------CccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 005931 89 VSAFLMEAN---------------------------------PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135 (669)
Q Consensus 89 ivk~Ll~~~---------------------------------~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~ 135 (669)
++++|++.+ +++... +..|.||||+|+..|+.+++++|++.+.+..
T Consensus 128 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 128 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206 (437)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred HHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 555555544 443322 4556666666666666666666666665543
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHH
Q 005931 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215 (669)
Q Consensus 136 ~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh 215 (669)
..+..|.||||.|+..|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|++++++++.. +..|.||||
T Consensus 207 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~ 283 (437)
T 1n11_A 207 -SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLH 283 (437)
T ss_dssp -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHH
T ss_pred -CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHHH
Confidence 34556788999999999999999999988774 677889999999999999999999999999999876 999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 005931 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFV 295 (669)
Q Consensus 216 ~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv 295 (669)
+|+..|+.++++.|+.. +.+++..+..|+||||+|+.+|+.+++++|++. +.++|.+|..|+||||+|+..|+.+++
T Consensus 284 ~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~n~~~~~g~t~L~~A~~~g~~~iv 360 (437)
T 1n11_A 284 LVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIV 360 (437)
T ss_dssp HHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHCChHHHH
Confidence 99999999999988876 578999999999999999999999999999996 778899999999999999999999999
Q ss_pred HHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931 296 EYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332 (669)
Q Consensus 296 ~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l 332 (669)
++|+ +.|+|++.+|.+|+||+++|.+.++.+..+.+
T Consensus 361 ~~Ll-~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 361 TLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp HHHH-HTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHH-HCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999 67899999999999999999999986554444
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-39 Score=342.07 Aligned_cols=294 Identities=21% Similarity=0.218 Sum_probs=194.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENE-KLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLA 115 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~-~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A 115 (669)
+..|+|+||.||+.|+.++|++||+.|++ ++.++. .|+||||+||..|+.++|++|+++|+++... +..+.++++.+
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~ 99 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhh-ccCCCchhHHH
Confidence 34567777777777777777777777766 444443 4677777777777777777777777766544 66777777777
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc---------CCCCCCCChHHHHHHhc
Q 005931 116 CRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA---------GKTDKNGFSPLHYASSI 186 (669)
Q Consensus 116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~~ 186 (669)
+..+..+++..+++.+.+.+ ..+..|.||||.|+..|+.++++++++.+.+.. ...+..|.||||+|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 77777777777777666654 455667777777777777777777777655432 12344577777777777
Q ss_pred CCHHHHHHHHh-cCCccccccCCCCChHHHHHHHcCC---HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHH
Q 005931 187 GNVNMTKLLLN-HNKDLALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKF 262 (669)
Q Consensus 187 g~~eiv~~Ll~-~g~~~~~~~~~~g~tpLh~Aa~~g~---~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~ 262 (669)
|+.+++++|++ .|++++.. |..|.|+++.++..+. .+.+..+|...+++++.+|..|+||||+|+..++.+++++
T Consensus 179 g~~~~v~~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 257 (337)
T ss_dssp TCHHHHHHHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence 77777777774 46666654 6777777776655432 3334444555566777777777777777777777777777
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931 263 LAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI 342 (669)
Q Consensus 263 Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~ 342 (669)
|++. .+.++|.+|.+|+||||+|+..|+.++|++|| +.|+|+|.+ +||++|...++.+ ++++|..+||.
T Consensus 258 Ll~~-~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~GAd~n~~-----~~L~~A~~~~~~~----iv~~Ll~~GA~ 326 (337)
T 4g8k_A 258 LLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCG-----DLVMTARRNYDHS----LVKVLLSHGAK 326 (337)
T ss_dssp HHTS-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-TTSCSSTTC-----CHHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred HHHh-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCC-----CHHHHHHHcCCHH----HHHHHHHCcCC
Confidence 7763 34566777777777777777777777777777 556666543 4777777766543 45556666665
Q ss_pred CCC
Q 005931 343 GSP 345 (669)
Q Consensus 343 ~~~ 345 (669)
.+.
T Consensus 327 ~d~ 329 (337)
T 4g8k_A 327 EDF 329 (337)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-39 Score=329.46 Aligned_cols=267 Identities=22% Similarity=0.225 Sum_probs=223.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
+|.|+||.|+..|+.++|++|++.++++....+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHc
Confidence 47788999999999999999988888743334778889999999999999999999888877654 77888899999888
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCC---------CCCCChHHHHHHhcCCH
Q 005931 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT---------DKNGFSPLHYASSIGNV 189 (669)
Q Consensus 119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~Lh~Aa~~g~~ 189 (669)
|+.+++++|++++.+.+ ..+..|.||||.|+..|+.+++++|++.+.+..... +..|.||||+|+..|+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp TCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 88888888888887765 456678888888888888888888888877653221 67789999999999999
Q ss_pred HHHHHHHhc-CCccccccCCCCChHHHHHHHcCC----HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 190 NMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGR----VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA 264 (669)
Q Consensus 190 eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~----~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll 264 (669)
+++++|++. |.+++.. +..|.||||.|+..++ .++++.|+.. +.+++.+|..|+||||+|+..++.+++++|+
T Consensus 162 ~~v~~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 162 EVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999987 8888775 8889999999999998 7777666654 5788889999999999999999999999999
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931 265 ESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH 311 (669)
Q Consensus 265 ~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~ 311 (669)
+. .+.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|.
T Consensus 240 ~~-~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll-~~Ga~~~~~d~ 284 (285)
T 1wdy_A 240 EQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCGDL 284 (285)
T ss_dssp HS-SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHSSCSCCSSC
T ss_pred hc-cCCCccccCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCcccc
Confidence 83 26678889999999999999999999999999 77889988773
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.2e-39 Score=340.37 Aligned_cols=304 Identities=19% Similarity=0.188 Sum_probs=262.5
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN 86 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~ 86 (669)
.+|+.|+..|+.+.++.++. ..+..++.+|..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCC-TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHH-hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCC
Confidence 45999999999999999998 55567788899999999999999999999999999988 78889999999999999999
Q ss_pred HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP 166 (669)
Q Consensus 87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~ 166 (669)
.+++++|+++|+++... +..|.||||+|+..|+.+++++|++++.+.+ ..+..+.++++.|+..+..+.+.+...
T Consensus 104 ~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~--- 178 (351)
T 3utm_A 104 YEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFK--- 178 (351)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhc---
Confidence 99999999999887654 8889999999999999999999999988776 566778999999988877777766553
Q ss_pred cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCC
Q 005931 167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTY 243 (669)
Q Consensus 167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~ 243 (669)
..++..++..++.+.++.++..+..... .+..|.||||+|+.. +..++++.|+. .+.+++..|..
T Consensus 179 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~ 246 (351)
T 3utm_A 179 ----------GHSLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKD 246 (351)
T ss_dssp ----------HHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTT
T ss_pred ----------ccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCC
Confidence 2467888899999999999887765444 488899999999999 44677666665 45889999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHc
Q 005931 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA 323 (669)
Q Consensus 244 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~ 323 (669)
|+||||+|+.+|+.+++++|++. +.++|.+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|+||+++|.
T Consensus 247 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~gad~~~~~~~g~tal~~a~-- 321 (351)
T 3utm_A 247 FMTPLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMGN-- 321 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHSC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCChhhhhh--
Confidence 99999999999999999999996 7788999999999999999999999999999 678999999999999999972
Q ss_pred CCCchHHHHHHHHHHhC
Q 005931 324 GTNDDATSLKKLFKTAG 340 (669)
Q Consensus 324 ~~~~~~~~l~~~l~~~~ 340 (669)
..+++++....
T Consensus 322 ------~~~~~~l~~~~ 332 (351)
T 3utm_A 322 ------EAVQQILSEST 332 (351)
T ss_dssp ------HHHHHHHHHC-
T ss_pred ------HHHHHHHHhcc
Confidence 34455555544
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.2e-39 Score=338.50 Aligned_cols=290 Identities=17% Similarity=0.201 Sum_probs=256.7
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhcccC-CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILLQRD-ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG 85 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d-~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g 85 (669)
..|+.|++.||++.|+.|++ . +..++.++ ..|.||||+||..|+.++|++|++.+++ ++.++..+.+|++.++..+
T Consensus 27 t~L~~Av~~g~~~~V~~LL~-~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE-G-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-H-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHH-C-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcc
Confidence 35999999999999999998 3 35567675 4699999999999999999999999998 7889999999999999999
Q ss_pred CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccc---------ccCCCCCcHHHHHHHcCCHH
Q 005931 86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF---------EEDSVESTPIYLAISRGHTD 156 (669)
Q Consensus 86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~---------~~~~~~~t~L~~A~~~g~~~ 156 (669)
..+++..+++.+.++... +..|.||||+|+..|+.+++++|++.+.+.+. ..+..|.||||.|+..|+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp CHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred cchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 999999999999988665 89999999999999999999999999876542 23456889999999999999
Q ss_pred HHHHHHhcCCcccCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931 157 IAREILEVRPRFAGKTDKNGFSPLHYASSIGN----VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232 (669)
Q Consensus 157 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~ 232 (669)
++++|++.....++..|..|.|+||.++..+. .+++++|+++|++++.. |.+|.||||+|+..|+.++++.|+..
T Consensus 183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 99999976555568889999999998876543 46889999999999986 99999999999999999999999999
Q ss_pred CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q 005931 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR 309 (669)
Q Consensus 233 ~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~ 309 (669)
.+.+++.+|.+|+||||+|+++|+.+++++|++. ++++| +.||||+|+..++.++|++|| +.|+|+|..
T Consensus 262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~--GAd~n-----~~~~L~~A~~~~~~~iv~~Ll-~~GA~~d~~ 330 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR--GASTD-----CGDLVMTARRNYDHSLVKVLL-SHGAKEDFH 330 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT--SCSST-----TCCHHHHHHHTTCHHHHHHHH-HTTCCC---
T ss_pred cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCC-----CCCHHHHHHHcCCHHHHHHHH-HCcCCCCCC
Confidence 8999999999999999999999999999999996 44544 456999999999999999999 778888864
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-37 Score=317.56 Aligned_cols=263 Identities=19% Similarity=0.234 Sum_probs=239.7
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhccc-CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG 85 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~-d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g 85 (669)
..|+.|+..|+.+.++.|++ .+. .++.+ +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~-~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE-GGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHH-cCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcC
Confidence 45999999999999999999 433 34555 88899999999999999999999999988 7888999999999999999
Q ss_pred CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc---------CCCCCcHHHHHHHcCCHH
Q 005931 86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEE---------DSVESTPIYLAISRGHTD 156 (669)
Q Consensus 86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~---------~~~~~t~L~~A~~~g~~~ 156 (669)
+.+++++|+++|+++... +..|.||||+|+..|+.+++++|++.+.+.+... +..|.||||.|+..|+.+
T Consensus 84 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 162 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162 (285)
T ss_dssp CHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred CHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence 999999999999987655 8899999999999999999999999988765332 667899999999999999
Q ss_pred HHHHHHhcCCcccCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931 157 IAREILEVRPRFAGKTDKNGFSPLHYASSIGN----VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232 (669)
Q Consensus 157 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~ 232 (669)
++++|++......+..|..|.||||+|+..++ .+++++|+++|++++.. |..|.||||+|+..|+.++++.|+..
T Consensus 163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 99999998444468889999999999999999 99999999999999976 99999999999999999999999998
Q ss_pred CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Q 005931 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD 276 (669)
Q Consensus 233 ~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D 276 (669)
.+.+++.+|..|+||||+|++.++.+++++|++. +++++.+|
T Consensus 242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~--Ga~~~~~d 283 (285)
T 1wdy_A 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR--GASTDCGD 283 (285)
T ss_dssp SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--SSCSCCSS
T ss_pred cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCCccc
Confidence 8899999999999999999999999999999997 66677666
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=316.90 Aligned_cols=260 Identities=18% Similarity=0.200 Sum_probs=177.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCC----------ccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCC
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCP----------ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNH 106 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~----------~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~ 106 (669)
...|.|+||+|+..|+.+.+..++..++ ...+.+|..|+||||+|+..|+.+++++|++.|.++... +.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII-TA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE-CT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CC
Confidence 5778999999999999877777665532 224567888999999999999999999999998887654 88
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc
Q 005931 107 ESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186 (669)
Q Consensus 107 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~ 186 (669)
.|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+.. .+.+|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHc
Confidence 89999999999999999999998887665 456667788888888888888888888776642 234578888888888
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931 187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266 (669)
Q Consensus 187 g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 266 (669)
|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++. +.+++. +..|+||||+|+..++.+++++|++.
T Consensus 168 g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 8888888888888877765 77788888888888888887777765 456663 67778888888888888888888875
Q ss_pred cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q 005931 267 FNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY 307 (669)
Q Consensus 267 ~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~ 307 (669)
+.+++.+|.+|+||||+|+ ++.+++++|++..++++.
T Consensus 245 --gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 245 --GADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp --TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred --CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 5677777888888888887 445777888766566554
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-38 Score=335.77 Aligned_cols=287 Identities=18% Similarity=0.155 Sum_probs=139.8
Q ss_pred cCHHHHHHHHhCCHHHHHHHHcCcch----------------------hhhcccCCCCChHHHHHHHcCCHHHHHHHHHh
Q 005931 5 MAQNLSEAIVRNDKQALINLVGCSNK----------------------RILLQRDASLNTALHLAARFGHVELVTEITKL 62 (669)
Q Consensus 5 m~~~L~~Ai~~gd~~~l~~ll~~~~~----------------------~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~ 62 (669)
+.++|.+++..|+.+.++.+++.... ......+..|.|+||+|+..|+ +++++|+..
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~ 115 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE 115 (373)
T ss_dssp ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCSTT
T ss_pred cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc
Confidence 56678888888887777766641110 0112335555666666665333 455544332
Q ss_pred CCccccccC-CCCCcHHHHHHHcCCHHHHHHHH--------hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931 63 CPELVAAEN-EKLETPLHEACCQGNHEVSAFLM--------EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133 (669)
Q Consensus 63 ~~~~~~~~n-~~g~TpLh~Aa~~g~~eivk~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~ 133 (669)
+ ++..| ..|.||||+|+..|+.+++++|+ +.|.+++.. |..|.||||+|+..|+.+++++|++++.+
T Consensus 116 --~-~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 191 (373)
T 2fo1_E 116 --S-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKAGAD 191 (373)
T ss_dssp --T-TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred --c-ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-CCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence 1 33344 45666666666666655555444 445554433 55566666666666666666666665555
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--cccCCCCCCCChHHHHHHhcC---CHHHHHHHHhcCCcccc----
Q 005931 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRP--RFAGKTDKNGFSPLHYASSIG---NVNMTKLLLNHNKDLAL---- 204 (669)
Q Consensus 134 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~g~t~Lh~Aa~~g---~~eiv~~Ll~~g~~~~~---- 204 (669)
.+ ..+..|.||||+|+..|+.+++++|++.+. ...+..|..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 192 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 270 (373)
T 2fo1_E 192 PT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270 (373)
T ss_dssp SC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred Cc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence 44 344445566666666666666666655441 122444555666666666555 55666666666555543
Q ss_pred ---ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCc
Q 005931 205 ---QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNT 281 (669)
Q Consensus 205 ---~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~T 281 (669)
..|..|.||||+|+..|+.++++.|+...+.+++..|..|+||||+|+..|+.+++++|++. +.+++.+|..|+|
T Consensus 271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--gad~~~~d~~g~t 348 (373)
T 2fo1_E 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASVEAVDATDHT 348 (373)
T ss_dssp GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCSSSCC
T ss_pred ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccCCCCCCCC
Confidence 12445556666666666666655555555555555555666666666666666666666554 4455555555666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 005931 282 VLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 282 pLh~A~~~~~~~iv~~Ll 299 (669)
|||+|+..|+.+++++|+
T Consensus 349 ~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 349 ARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 666666666666666555
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.8e-37 Score=308.52 Aligned_cols=217 Identities=21% Similarity=0.239 Sum_probs=141.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
+|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHc
Confidence 578889999888888888888888877 7788888888888888888888888888888876554 77788888888888
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198 (669)
Q Consensus 119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~ 198 (669)
|+.+++++|++.+.+.+ .+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 88888888887776553 2233556666666666666666666655543 44555555666666666666666666665
Q ss_pred CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265 (669)
Q Consensus 199 g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~ 265 (669)
|++++. +..|.||||+|+..|+.++++.|++. +++++.+|..|+||+|+|+.++ +++++|++
T Consensus 157 g~~~~~--~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~ 218 (261)
T 2xai_A 157 GADVNQ--GKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPES--PLAQLFLE 218 (261)
T ss_dssp TCCTTC--CBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTTC--THHHHHHH
T ss_pred CCCCCC--CCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccccc--cHHHHHHh
Confidence 555542 44555555555555555554444433 3445555555555555554322 24444444
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.7e-37 Score=328.29 Aligned_cols=260 Identities=18% Similarity=0.161 Sum_probs=171.2
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF 112 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL 112 (669)
.+..|..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.|++.. +..|.|||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L 88 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI 88 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence 456688999999999999999999999999988 78999999999999999999999999999999543 45899999
Q ss_pred HHHHHcCCHHHHHHHHcC----CCcccc----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCcccC
Q 005931 113 SLACRQGHLDVVKLLINQ----SWLMEF----------------EEDSVESTPIYLAISRG--HTDIAREILEVRPRFAG 170 (669)
Q Consensus 113 ~~A~~~g~~eiv~~Ll~~----~~~~~~----------------~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~ 170 (669)
|+|+..|+.+++++|++. +...+. ..+..|.||||+|+..| +.+++++|++.+.+. +
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-T 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-T
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-c
Confidence 999999999999999987 433321 03334555555555555 555555555555443 4
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHhcCCc-----cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 005931 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKD-----LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGE 245 (669)
Q Consensus 171 ~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~-----~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~ 245 (669)
..|..|.||||+|+..|+.+++++|+++|++ ++.. |..|.||||+|+..|+.++++.|++. +.+++..|..|+
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~ 245 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHT 245 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCC
Confidence 4455555555555555555555555555555 4433 55555555555555555555555443 355555555555
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCCC----------CCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 246 TVFHLAVRFDKYNAFKFLAESFNTC----------LFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 246 t~Lh~Av~~~~~~iv~~Ll~~~~~~----------~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
||||+|+..|+.+++++|++.+... .....+..|+|||+.|+..++.+.+..|+
T Consensus 246 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp CHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence 5555555555555555555542210 01113445555555555555555444444
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-37 Score=328.65 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=218.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931 43 ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD 122 (669)
Q Consensus 43 ~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e 122 (669)
+++-+...|+.++++.++. +..+..|.||||+|+..|+ +++++|+.. +++...+..|.||||+|+..|+.+
T Consensus 69 ~~~~~~~~g~~~~~~~~~~------~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~ 139 (373)
T 2fo1_E 69 YGNGNDFLGDFNHTNLQIP------TEPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAE 139 (373)
T ss_dssp -------------------------------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCS
T ss_pred cCCCCCccccccccccccc------cCCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHH
Confidence 4455555566666665543 3457789999999999654 888888764 333332378999999999999998
Q ss_pred HHHHHH--------cCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931 123 VVKLLI--------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194 (669)
Q Consensus 123 iv~~Ll--------~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~ 194 (669)
++++|+ +.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++
T Consensus 140 ~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~ 217 (373)
T 2fo1_E 140 KSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVY 217 (373)
T ss_dssp CCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHH
Confidence 888776 6777766 56778999999999999999999999998875 6788999999999999999999999
Q ss_pred HHhcC---CccccccCCCCChHHHHHHHcC---CHHHHHHHHhcCCCCccc--------ccCCCCcHHHHHHHcCCHHHH
Q 005931 195 LLNHN---KDLALQYNKDGYTPLHLAAING---RVKILVAFLSSSPASFDR--------LTTYGETVFHLAVRFDKYNAF 260 (669)
Q Consensus 195 Ll~~g---~~~~~~~~~~g~tpLh~Aa~~g---~~e~v~~LL~~~~~~i~~--------~d~~g~t~Lh~Av~~~~~~iv 260 (669)
|++++ .+++.. |..|.||||+|+..| +.++++.|+..+ .+++. .|..|+||||+|+..|+.+++
T Consensus 218 Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 295 (373)
T 2fo1_E 218 MLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295 (373)
T ss_dssp HTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred HHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHH
Confidence 99988 677765 999999999999998 889988888765 55554 577999999999999999999
Q ss_pred HHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332 (669)
Q Consensus 261 ~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l 332 (669)
++|++.. +.+++.+|.+|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|...++.+.++.|
T Consensus 296 ~~Ll~~~-~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 296 KYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp HHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhc-CCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999862 4788999999999999999999999999999 67999999999999999999999986654443
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=306.06 Aligned_cols=249 Identities=18% Similarity=0.198 Sum_probs=220.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHc
Q 005931 73 KLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR 152 (669)
Q Consensus 73 ~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 152 (669)
+|+||||+|+..|+.+++++|++.|.++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 5899999999999999999999999887654 8899999999999999999999999998776 5677899999999999
Q ss_pred CCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931 153 GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232 (669)
Q Consensus 153 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~ 232 (669)
|+.+++++|++.+.+.. .+.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999988763 3556999999999999999999999999999886 99999999999999999999999886
Q ss_pred CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC-------cc
Q 005931 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV-------LD 305 (669)
Q Consensus 233 ~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~-------~d 305 (669)
+ .+++. +..|+||||+|+..++.+++++|++. +++++.+|.+|+||||+|+..+ +++++|++..+ ++
T Consensus 157 g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~ 230 (261)
T 2xai_A 157 G-ADVNQ-GKGQDSPLHAVARTASEELACLLMDF--GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCR 230 (261)
T ss_dssp T-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHH
T ss_pred C-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHH
Confidence 5 67774 88999999999999999999999997 7788999999999999999655 58899996544 46
Q ss_pred cccccCCCCCHHHHHHHcCCCchHHHH
Q 005931 306 IYCRNHKNQTALDIIEQAGTNDDATSL 332 (669)
Q Consensus 306 ~~~~n~~g~T~L~~a~~~~~~~~~~~l 332 (669)
++.+|..|.||+|.|.+...+...+.+
T Consensus 231 ~~~r~~~g~t~l~~~~~~~~p~~l~~~ 257 (261)
T 2xai_A 231 LRIRKCFGIQQHHKITKLVLPEDLKQF 257 (261)
T ss_dssp HHHHTTSCTTCGGGGGGSSSCHHHHHH
T ss_pred HHHHHHhchhccccCcccCCcHHHHHH
Confidence 778999999999999887766554443
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=304.85 Aligned_cols=243 Identities=19% Similarity=0.209 Sum_probs=195.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCCc----------cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 005931 71 NEKLETPLHEACCQGNHEVSAFLMEANPT----------VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS 140 (669)
Q Consensus 71 n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~ 140 (669)
...|.|+||+|+..|+.+.+..++..++. .....+..|.||||+|+..|+.+++++|++.+.+.+ ..+.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence 45789999999999998777776654422 233458899999999999999999999999988766 5677
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931 141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220 (669)
Q Consensus 141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~ 220 (669)
.|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++. +.+|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHc
Confidence 7999999999999999999999998775 77899999999999999999999999999999875 55699999999999
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300 (669)
Q Consensus 221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~ 300 (669)
|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++ .|..|+||||+|+..++.+++++|+
T Consensus 168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll- 242 (285)
T 3d9h_A 168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES--GADVN-QGKGQDSPLHAVVRTASEELACLLM- 242 (285)
T ss_dssp TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT--TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHH-
T ss_pred CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC--CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence 999999888875 478999999999999999999999999999997 55666 4899999999999999999999999
Q ss_pred hcCcccccccCCCCCHHHHHHH
Q 005931 301 ETVLDIYCRNHKNQTALDIIEQ 322 (669)
Q Consensus 301 ~~~~d~~~~n~~g~T~L~~a~~ 322 (669)
+.|+|++.+|.+|+|||++|..
T Consensus 243 ~~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 243 DFGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp HTTCCTTCCCTTSCCGGGGSCT
T ss_pred HCCCCCCCcCCCCCCHHHHhcC
Confidence 6789999999999999999983
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6e-36 Score=305.46 Aligned_cols=267 Identities=19% Similarity=0.171 Sum_probs=189.2
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKLCPE--LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS 110 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~--~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t 110 (669)
++.+|..|.||||+||..|+.++|++|++.+++ .++.+|..|.||||+|+..|+.+++++|+++|+++... +..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCC
Confidence 567899999999999999999999999998765 37888999999999999999999999999999998755 889999
Q ss_pred HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCH-
Q 005931 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV- 189 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~- 189 (669)
|||+|+..|+.+++++|++.+......... +.+ ... .......+.++++.++..+..
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~ 138 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASD---TYL----------------TQS---QDCTPDTSHAPAAVDSQPNPEN 138 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHH---HHh----------------hcc---cccCcchhcchhhhccccccch
Confidence 999999999999999999988654321110 000 000 011223455666666655443
Q ss_pred HHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFN 268 (669)
Q Consensus 190 eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~ 268 (669)
.....+...+.+++.. +..|.||||+|+..|+.++++.|+..+ .+++..+. .|+||||+|+..|+.+++++|++.
T Consensus 139 ~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-- 214 (282)
T 1oy3_D 139 EEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-- 214 (282)
T ss_dssp -----CCCGGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred hhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc--
Confidence 3344455556666654 888999999999999999988888754 67777775 499999999999999999999986
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCc
Q 005931 269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327 (669)
Q Consensus 269 ~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~ 327 (669)
+.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||+++|....+.+
T Consensus 215 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tpl~~a~~~~~~~ 272 (282)
T 1oy3_D 215 GADPTARMYGGRTPLGSALLRPNPILARLLR-AHGAPEPEDGGDKLSPCSSSGSDSDSD 272 (282)
T ss_dssp TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH-HTTCCCCCCC-----------------
T ss_pred CCCCcccccCCCCHHHHHHHcCCcHHHHHHH-HcCCCcCcCCCcccccccccCCccccc
Confidence 6788899999999999999999999999999 788899999999999999998866544
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.6e-36 Score=299.75 Aligned_cols=241 Identities=21% Similarity=0.186 Sum_probs=130.9
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF 112 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL 112 (669)
++.+|..|.||||+|+..|+.-. ....+...++.+++++|++.|+++....+..|.|||
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~---------------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L 61 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLE---------------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61 (253)
T ss_dssp ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred CCCCCCCCCcHHHHHHhcccccc---------------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHH
Confidence 45667777777777777662100 000122333555555555555555444455555555
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHH
Q 005931 113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192 (669)
Q Consensus 113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv 192 (669)
|+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++
T Consensus 62 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 140 (253)
T 1yyh_A 62 HLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140 (253)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence 55555555555555555554443 33444556666666666666666666655544456667777777777777777777
Q ss_pred HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 005931 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLF 272 (669)
Q Consensus 193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~i 272 (669)
++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..|+.+++++|++. +.++
T Consensus 141 ~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~ 216 (253)
T 1yyh_A 141 EDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH--FANR 216 (253)
T ss_dssp HHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCT
T ss_pred HHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCc
Confidence 7777777777765 77777777777777777777666654 466777777777777777777777777777775 5566
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 273 HGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 273 n~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
+.+|..|+||||+|+..|+.+++++|.
T Consensus 217 ~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 217 DITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 777777788888888777777777777
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-35 Score=299.43 Aligned_cols=216 Identities=19% Similarity=0.208 Sum_probs=125.3
Q ss_pred HHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931 47 AARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126 (669)
Q Consensus 47 Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~ 126 (669)
+...++.+++++|++.+++..+..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++
T Consensus 30 ~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~ 108 (253)
T 1yyh_A 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQI 108 (253)
T ss_dssp ----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHH
T ss_pred hhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence 445556666666666666544455566666666666666666666666666555433 5566666666666666666666
Q ss_pred HHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccc
Q 005931 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206 (669)
Q Consensus 127 Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~ 206 (669)
|++.+.......+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 109 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~- 186 (253)
T 1yyh_A 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ- 186 (253)
T ss_dssp HHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-
T ss_pred HHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-
Confidence 666554222244555666666666666666666666665553 455666777777777777777777777777776654
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266 (669)
Q Consensus 207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 266 (669)
|..|.||||+|+..|+.++++.|++. +.+++.+|..|+||+|+|+++|+.+++++|...
T Consensus 187 ~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 187 NNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 66777777777777777776666554 356667777777777777777777777777653
No 18
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.5e-35 Score=309.38 Aligned_cols=286 Identities=19% Similarity=0.163 Sum_probs=251.3
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF 112 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL 112 (669)
....+..+.|+||.||..|+.+.|+.|+......++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.|||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L 95 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHH
Confidence 34457788999999999999999999998755558889999999999999999999999999999987665 88999999
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHH
Q 005931 113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192 (669)
Q Consensus 113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv 192 (669)
|+|+..|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.+|+++++..+..+.+
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHH
Confidence 99999999999999999998776 56777999999999999999999999998875 67789999999999998888877
Q ss_pred HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc---CCHHHHHHHHHhcCC
Q 005931 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF---DKYNAFKFLAESFNT 269 (669)
Q Consensus 193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~---~~~~iv~~Ll~~~~~ 269 (669)
.+... ..++..++..+..+.+..++...... ...+..|.||||+|+.. +..+++++|++. +
T Consensus 174 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~--g 237 (351)
T 3utm_A 174 TYEFK-------------GHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRK--G 237 (351)
T ss_dssp HHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT--T
T ss_pred Hhhhc-------------ccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc--C
Confidence 77653 24788899999999999988776433 34678899999999999 558999999996 6
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931 270 CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI 342 (669)
Q Consensus 270 ~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~ 342 (669)
.+++.+|.+|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|...++.+. .++|...|+.
T Consensus 238 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~t~L~~A~~~~~~~~----v~~Ll~~gad 305 (351)
T 3utm_A 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQT----CRLLLSYGSD 305 (351)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCC
T ss_pred CCcCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHcCCC
Confidence 788999999999999999999999999999 7789999999999999999999987654 4555566654
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.2e-36 Score=318.43 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=221.9
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHH
Q 005931 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146 (669)
Q Consensus 67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L 146 (669)
.+..|..|.||||+||..|+.++|++|++.|+++... +..|.||||+|+..|+.+++++|++.+...+ +..|.|||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L 88 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI 88 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence 4556778999999999999999999999999987655 8999999999999999999999999987543 34689999
Q ss_pred HHHHHcCCHHHHHHHHhc----CCcccCC-----------------CCCCCChHHHHHHhcC--CHHHHHHHHhcCCccc
Q 005931 147 YLAISRGHTDIAREILEV----RPRFAGK-----------------TDKNGFSPLHYASSIG--NVNMTKLLLNHNKDLA 203 (669)
Q Consensus 147 ~~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~~~ 203 (669)
|+|+..|+.+++++|++. +... +. .|..|.||||+|+..| +.+++++|+++|++++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 999999999999999998 4443 22 6778999999999999 9999999999999998
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHhcCCC----CcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Q 005931 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPA----SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFG 279 (669)
Q Consensus 204 ~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~----~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G 279 (669)
.. |..|.||||+|+..|+.++++.|+..... +++..|..|+||||+|+..|+.+++++|++. +.+++.+|..|
T Consensus 168 ~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~~~~d~~g 244 (364)
T 3ljn_A 168 AK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--GIDVNMEDNEH 244 (364)
T ss_dssp CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT--TCCTTCCCTTS
T ss_pred cc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCC
Confidence 86 99999999999999999999999986533 2899999999999999999999999999996 77889999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCccccc------------ccCCCCCHHHHHHHcCCCchHHH
Q 005931 280 NTVLHLAVLRKNYQFVEYIIKETVLDIYC------------RNHKNQTALDIIEQAGTNDDATS 331 (669)
Q Consensus 280 ~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~------------~n~~g~T~L~~a~~~~~~~~~~~ 331 (669)
.||||+|+..|+.+++++|++. +.+++. .+..|+||+..|+..++.+.+..
T Consensus 245 ~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 245 TVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred CCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 9999999999999999999954 545433 56778899888776664444433
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.1e-34 Score=283.69 Aligned_cols=222 Identities=24% Similarity=0.371 Sum_probs=118.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL 114 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~ 114 (669)
.+|..|.||||+||..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|.++..
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------ 72 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP------------ 72 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC------------
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC------------
Confidence 3445555555555555555555555555444 344444555555555555555555555554444322
Q ss_pred HHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194 (669)
Q Consensus 115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~ 194 (669)
.+..|.||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++
T Consensus 73 -----------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 129 (237)
T 3b7b_A 73 -----------------------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129 (237)
T ss_dssp -----------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -----------------------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 223344444444444444555555544433344555666666666666666666666
Q ss_pred HHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Q 005931 195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG 274 (669)
Q Consensus 195 Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~ 274 (669)
|+++|++++.. +..|.||||+|+..|+.++++.|+.. +.+++..|..|.||||+|++.++.+++++|++. +.+++.
T Consensus 130 Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~ 205 (237)
T 3b7b_A 130 LLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTL 205 (237)
T ss_dssp HHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTC
T ss_pred HHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCc
Confidence 66666665543 55566666666666666655555443 245555555555555555555555555555553 444555
Q ss_pred CCCCCCcHHHHHHHcCCHHHHH
Q 005931 275 QDQFGNTVLHLAVLRKNYQFVE 296 (669)
Q Consensus 275 ~D~~G~TpLh~A~~~~~~~iv~ 296 (669)
+|.+|+||||+|+..++...+.
T Consensus 206 ~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 206 KNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp CCTTSCCHHHHSCTTCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 5555555555555555544333
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.2e-34 Score=283.09 Aligned_cols=220 Identities=25% Similarity=0.267 Sum_probs=176.9
Q ss_pred ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931 4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83 (669)
Q Consensus 4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~ 83 (669)
+.++ |+.|+..|+.+.++.|++ . +..++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 11 g~t~-L~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 11 KRSP-LHAAAEAGHVDICHMLVQ-A-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp SCCH-HHHHHHHTCHHHHHHHHH-T-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHHHH
T ss_pred CCCH-HHHHHHcCcHHHHHHHHH-c-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHH
Confidence 4455 999999999999999998 3 355788899999999999999999999999999988 78889999999999999
Q ss_pred cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163 (669)
Q Consensus 84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 163 (669)
.|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 165 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEILLA 165 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999955455558889999999999999999999998877654 445567777777777777777777777
Q ss_pred cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931 164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230 (669)
Q Consensus 164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL 230 (669)
.+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+.+|+.+.+.+++
T Consensus 166 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 166 AKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp TTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred cCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 76654 555667777777777777777777777777777654 777777777777777765554444
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.1e-34 Score=294.03 Aligned_cols=260 Identities=18% Similarity=0.134 Sum_probs=182.2
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCc
Q 005931 67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTV--ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVEST 144 (669)
Q Consensus 67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t 144 (669)
++.+|..|+||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|++++.+.+ ..+..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence 4678899999999999999999999999988762 34457888999999999999999999998887765 45666788
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHH
Q 005931 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224 (669)
Q Consensus 145 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e 224 (669)
|||+|+..|+.+++++|++.++....... .+ ++..+.. .....+.++++.++..+...
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 138 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDAS---DT----------------YLTQSQD---CTPDTSHAPAAVDSQPNPEN 138 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhH---HH----------------Hhhcccc---cCcchhcchhhhccccccch
Confidence 88888888888888888877665421110 00 0011111 11345678888888877777
Q ss_pred HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ-FGNTVLHLAVLRKNYQFVEYIIKETV 303 (669)
Q Consensus 225 ~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~-~G~TpLh~A~~~~~~~iv~~Ll~~~~ 303 (669)
....++...+.+++..+..|.||||+|+..|+.+++++|++. +.+++.++. .|+||||+|+..++.+++++|+ +.|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~g 215 (282)
T 1oy3_D 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAG 215 (282)
T ss_dssp -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred hhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HcC
Confidence 767777777788999999999999999999999999999997 667888885 4999999999999999999999 669
Q ss_pred cccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCCCCCchhhhhc
Q 005931 304 LDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKL 356 (669)
Q Consensus 304 ~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 356 (669)
+|++.+|..|+|||++|...++.+ +.++|...|+........+..++..
T Consensus 216 ad~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 216 ADPTARMYGGRTPLGSALLRPNPI----LARLLRAHGAPEPEDGGDKLSPCSS 264 (282)
T ss_dssp CCTTCCCTTSCCHHHHHHTSSCHH----HHHHHHHTTCCCCCCC---------
T ss_pred CCCcccccCCCCHHHHHHHcCCcH----HHHHHHHcCCCcCcCCCcccccccc
Confidence 999999999999999999988654 5666777888776655555554443
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-34 Score=288.12 Aligned_cols=232 Identities=21% Similarity=0.205 Sum_probs=169.2
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHH----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCC
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITK----LCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHES 108 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~----~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g 108 (669)
++.+|..|.||||+||..|+.+++++|++ .+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g 79 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHG 79 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTS
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCC
Confidence 35678888888888888888888888887 3444 7778888888888888888888888888888776544 6677
Q ss_pred CcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC
Q 005931 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN 188 (669)
Q Consensus 109 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~ 188 (669)
.||||+|+..|+.+++++|++.+.... ...+..|..|.||||+|+..|+
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~ 128 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGT-------------------------------LDLEARNYDGLTALHVAVNTEC 128 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTS-------------------------------CCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcc-------------------------------ccccccCcCCCcHHHHHHHcCC
Confidence 777777777777777777776654210 0124456667777777777777
Q ss_pred HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268 (669)
Q Consensus 189 ~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~ 268 (669)
.+++++|+++|++++...+..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..++.+++++|++.
T Consensus 129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-- 205 (241)
T 1k1a_A 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-- 205 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--
Confidence 77777777777777765336777788888777777777776655 467777777888888888888888888888875
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300 (669)
Q Consensus 269 ~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~ 300 (669)
+.+++.+|..|+||||+|+..++.++++.|++
T Consensus 206 ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp TCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 56677788888888888888888888887773
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-34 Score=286.15 Aligned_cols=221 Identities=24% Similarity=0.267 Sum_probs=171.0
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHh----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCC
Q 005931 68 AAENEKLETPLHEACCQGNHEVSAFLME----ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143 (669)
Q Consensus 68 ~~~n~~g~TpLh~Aa~~g~~eivk~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~ 143 (669)
+.+|..|+||||+|+..|+.+++++|++ .+.++.. .+..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~---------------------------------- 47 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQ---------------------------------- 47 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSC----------------------------------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-ccccCC----------------------------------
Confidence 4556677777777777777777777775 3333322 244444
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC----ccccccCCCCChHHHHHHH
Q 005931 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK----DLALQYNKDGYTPLHLAAI 219 (669)
Q Consensus 144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~----~~~~~~~~~g~tpLh~Aa~ 219 (669)
||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++ +++.. +..|.||||.|+.
T Consensus 48 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~ 125 (241)
T 1k1a_A 48 TPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVN 125 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHH
Confidence 4555555555555555555544443 4456778888888888888888888888876 55554 8899999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931 220 NGRVKILVAFLSSSPASFDRLT-TYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298 (669)
Q Consensus 220 ~g~~e~v~~LL~~~~~~i~~~d-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L 298 (669)
.|+.++++.|+..+ .+++..+ ..|.||||+|+.+++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|
T Consensus 126 ~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 126 TECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999998888764 6788877 8899999999999999999999997 678899999999999999999999999999
Q ss_pred HHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931 299 IKETVLDIYCRNHKNQTALDIIEQAGTNDDA 329 (669)
Q Consensus 299 l~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~ 329 (669)
+ +.|+|++.+|..|+|||++|...++.+..
T Consensus 203 l-~~ga~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 203 V-RSGADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp H-HTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred H-hcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 9 68899999999999999999887654433
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.6e-33 Score=278.92 Aligned_cols=222 Identities=24% Similarity=0.292 Sum_probs=152.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR 117 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~ 117 (669)
..++|+||.||..|+.+.+++|++.++...+..|..|.||||+|+..|+.+++++|++.|.++... +..|.||||+|+.
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 82 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAAS 82 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHHHH
Confidence 346677777777777777777777766666666777777777777777777777777776665433 5556666666666
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931 118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197 (669)
Q Consensus 118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~ 197 (669)
.|+.+++++|++++.+. +..|..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~v~~Ll~~g~~~-----------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 83 AGXDEIVKALLVKGAHV-----------------------------------NAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp HTCHHHHHHHHHTTCCT-----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCC-----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 66666665555554332 3445566677777777777777777777
Q ss_pred cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Q 005931 198 HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ 277 (669)
Q Consensus 198 ~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~ 277 (669)
+|++++.. +..|.||||.|+..|+.++++.|+.. +.+++.+|..|+||||+|+..++.+++++|++. +.+++.+|.
T Consensus 128 ~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~ 203 (231)
T 3aji_A 128 GGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIENK 203 (231)
T ss_dssp TTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCT
T ss_pred cCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCC
Confidence 77766654 66677777777777777776666653 466677777777777777777777777777775 556677777
Q ss_pred CCCcHHHHHHHcCCHHHHHHHH
Q 005931 278 FGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 278 ~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
.|.||||+|+..++.+++++|+
T Consensus 204 ~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 204 EEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp TSCCHHHHSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhHHHHHHHHHc
Confidence 7777777777777777777776
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.6e-33 Score=278.93 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=168.7
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN 86 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~ 86 (669)
.+|+.|+..|+++.++.+++ ..+..++.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHH-HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC
T ss_pred chHHHHHHhCCHHHHHHHHH-hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcCH
Confidence 44999999999999999999 66677888899999999999999999999999999988 78899999999999999999
Q ss_pred HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP 166 (669)
Q Consensus 87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~ 166 (669)
.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.
T Consensus 86 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 86 DEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 99999999999987654 8889999999999999999999988776654 344456666666666666666666666555
Q ss_pred cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931 167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230 (669)
Q Consensus 167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL 230 (669)
+. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..++.++++.|+
T Consensus 164 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 164 ST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp CS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred Cc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHhhHHHHHHHHHc
Confidence 43 445556666666666666666666666666665543 556666666666555555544443
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-33 Score=278.79 Aligned_cols=221 Identities=22% Similarity=0.296 Sum_probs=158.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhC--CccccccCCCCCcHHHHHHH
Q 005931 40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEAN--PTVATKLNHESQSAFSLACR 117 (669)
Q Consensus 40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~--~~~~~~~~~~g~tpL~~A~~ 117 (669)
|+||||+||..|+.++|++|++.+++..+..|..|.||||+|+..|+.+++++|++.+ .++....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6778888888888888888887777766667777788888888888888888888777 44443245566666666666
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931 118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197 (669)
Q Consensus 118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~ 197 (669)
.|+.+++++|++.+.. .+ .+..|..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~--------------------------------~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLK--------------------------------PD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp HCCHHHHHHHHSSSSC--------------------------------CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCC--------------------------------cc-cccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 6666666666655411 22 24456667777777777777777777777
Q ss_pred cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH-HhcCCCCCccCC
Q 005931 198 HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA-ESFNTCLFHGQD 276 (669)
Q Consensus 198 ~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll-~~~~~~~in~~D 276 (669)
+|++++.. +..|.||||+|+..|+.++++.|+..++.+++..|..|+||||+|+..++.+++++|+ +. +.+++.+|
T Consensus 129 ~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~--ga~~~~~~ 205 (228)
T 2dzn_A 129 NGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY--GAEYDLVD 205 (228)
T ss_dssp TTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH--CCCSCCBC
T ss_pred cCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--CCCCCccC
Confidence 77777765 7777888888888888887777777666777777888888888888888888888888 54 56777788
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHH
Q 005931 277 QFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 277 ~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
.+|.||||+|+.. +++++|+
T Consensus 206 ~~g~t~l~~A~~~---~~~~~l~ 225 (228)
T 2dzn_A 206 NKGAKAEDVALNE---QVKKFFL 225 (228)
T ss_dssp TTSCBGGGGCSST---THHHHHH
T ss_pred CCCCcHHHHHHHH---HHHHHHH
Confidence 8888888888644 4555555
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.3e-33 Score=277.11 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=180.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931 74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153 (669)
Q Consensus 74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g 153 (669)
|+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-------------------- 61 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-------------------- 61 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT--------------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc--------------------
Confidence 678888888888888888888877776665566667777777666666666666665532
Q ss_pred CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC--CccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN--KDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231 (669)
Q Consensus 154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g--~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~ 231 (669)
.+.....+..|.||||+|+..|+.+++++|+++| ++++.. +..|.||||.|+..|+.++++.|++
T Consensus 62 ------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 62 ------------VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp ------------CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ------------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 2222225778999999999999999999999998 777765 8899999999999999999998887
Q ss_pred cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH 311 (669)
Q Consensus 232 ~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~ 311 (669)
. +.+++..|..|+||||+|+..|+.+++++|++.+ ..+++.+|..|+||||+|+..++.+++++|+++.|+|++.+|.
T Consensus 129 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~ 206 (228)
T 2dzn_A 129 N-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206 (228)
T ss_dssp T-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred c-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC-cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence 6 6889999999999999999999999999999862 2678999999999999999999999999999888999999999
Q ss_pred CCCCHHHHHHHc
Q 005931 312 KNQTALDIIEQA 323 (669)
Q Consensus 312 ~g~T~L~~a~~~ 323 (669)
.|+||+++|...
T Consensus 207 ~g~t~l~~A~~~ 218 (228)
T 2dzn_A 207 KGAKAEDVALNE 218 (228)
T ss_dssp TSCBGGGGCSST
T ss_pred CCCcHHHHHHHH
Confidence 999999999643
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=274.11 Aligned_cols=226 Identities=22% Similarity=0.260 Sum_probs=145.7
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHH
Q 005931 34 LQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFS 113 (669)
Q Consensus 34 ~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~ 113 (669)
+..|..|.|+||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+++.....+..|.||||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 34577777888888888888888888887766 66777778888888888888888888888777766555555666666
Q ss_pred HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHH
Q 005931 114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193 (669)
Q Consensus 114 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~ 193 (669)
+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------~~~~~g~t~l~~A~~~~~~~~~~ 126 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPS-----------------------------------LIDGEGCSCIHLAAQFGHTSIVA 126 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-----------------------------------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCc-----------------------------------ccCCCCCCHHHHHHHcCHHHHHH
Confidence 6666666666666666554433 33445555555555555555666
Q ss_pred HHHhcCCccccccCCCCChHHHHHHHcCC-HHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 005931 194 LLLNHNKDLALQYNKDGYTPLHLAAINGR-VKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFNTCL 271 (669)
Q Consensus 194 ~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~-~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~ 271 (669)
+|+++|++++.. +..|.||||.|+..++ .++ ..+|...+.+++..+. .|.||||+|+.+++.+++++|++. +.+
T Consensus 127 ~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~-~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~ 202 (240)
T 3eu9_A 127 YLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDP-TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GAN 202 (240)
T ss_dssp HHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTT-HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCC
T ss_pred HHHhcCCCcccc-CCCCCcHHHHHHHhCChHHH-HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCC
Confidence 666555555543 5556666666665444 333 3333334455555554 566666666666666666666665 455
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 272 FHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 272 in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
++.+|..|.||||+|+..++.+++++|+
T Consensus 203 ~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 203 VDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 5666666666666666666666666666
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-33 Score=288.76 Aligned_cols=277 Identities=21% Similarity=0.226 Sum_probs=190.7
Q ss_pred HHHHhCCHHHHHHHHcCcch---h----hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931 11 EAIVRNDKQALINLVGCSNK---R----ILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83 (669)
Q Consensus 11 ~Ai~~gd~~~l~~ll~~~~~---~----~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~ 83 (669)
.++..+..+.++.++..... . .....+..|.|+||.||..|+.++|++|++.+.+ ++..|..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence 35677777778777772211 0 0111134567888888888888888888888777 67777788888888888
Q ss_pred cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163 (669)
Q Consensus 84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 163 (669)
.|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++++.+.+
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~---------------------------- 133 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHVG---------------------------- 133 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------------------
T ss_pred cCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC----------------------------
Confidence 88888888888887776543 6667777777777777766666666654433
Q ss_pred cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc-CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005931 164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242 (669)
Q Consensus 164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~ 242 (669)
..|..|.||||+|+..++.++++.++.. +.++... +..+.++++ ..+..++..........+.
T Consensus 134 -------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 134 -------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-RKEEERIML--------RDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp -------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHH--------HHHHHHHHHTCCCCCCCTT
T ss_pred -------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhh-hhhhhhHHH--------HHHHHHHhccCcchhhhcC
Confidence 3344555555555555555555554432 3332221 111222222 2235566666666666778
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ 322 (669)
Q Consensus 243 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~ 322 (669)
.|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|.+
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCTTTSCCS
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHH
Confidence 899999999999999999999986 6778889999999999999999999999999 6788999999999999999843
Q ss_pred cCCCchHHHHHHHHHHhC
Q 005931 323 AGTNDDATSLKKLFKTAG 340 (669)
Q Consensus 323 ~~~~~~~~~l~~~l~~~~ 340 (669)
+....+.++++...
T Consensus 275 ----~~~~~l~~l~~~~~ 288 (299)
T 1s70_B 275 ----DILGYLEELQKKQN 288 (299)
T ss_dssp ----GGGHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 34555555555543
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-33 Score=291.21 Aligned_cols=243 Identities=19% Similarity=0.224 Sum_probs=165.5
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN 86 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~ 86 (669)
..|+.|+..|+.+.++.|++ . +..++.+|..|.||||+||..|+.++|++|++.+++ ++..|..|.||||+|+..|+
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLE-R-GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-H-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred cHHHHHHHcCCHHHHHHHHH-c-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCC
Confidence 45999999999999999998 3 355788899999999999999999999999999988 78899999999999999999
Q ss_pred HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931 87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP 166 (669)
Q Consensus 87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~ 166 (669)
.+++++|+++|+++... +..|.||||+|+..++.+++++++.............+.+++ ...+..++..+.
T Consensus 119 ~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~ 189 (299)
T 1s70_B 119 LDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWLNSGH 189 (299)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHHhccC
Confidence 99999999999987655 889999999999999999999888643221100000011111 122223333333
Q ss_pred cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCc
Q 005931 167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET 246 (669)
Q Consensus 167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t 246 (669)
...... +..|.||||+|+..|+.++++.|+.. +.+++..|..|+|
T Consensus 190 ~~~~~~----------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~t 234 (299)
T 1s70_B 190 INDVRH----------------------------------AKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWT 234 (299)
T ss_dssp CCCCCC----------------------------------TTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCC
T ss_pred cchhhh----------------------------------cCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCc
Confidence 332333 44455555555555555554444432 3455555555556
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 247 ~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
|||+|+.+|+.+++++|++. +++++.+|..|+||||+|+.. ..+.++.|+
T Consensus 235 pL~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~ 284 (299)
T 1s70_B 235 PLHAAAHWGKEEACRILVEN--LCDMEAVNKVGQTAFDVADED-ILGYLEELQ 284 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTTTSCCSG-GGHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHH-HHHHHHHHH
Confidence 66666666666666666654 445555666666666666432 333333333
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=271.70 Aligned_cols=220 Identities=25% Similarity=0.232 Sum_probs=156.1
Q ss_pred HHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCH
Q 005931 8 NLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNH 87 (669)
Q Consensus 8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~ 87 (669)
+|+.|+..|+.+.++.+++ .+ ..++.++..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.
T Consensus 12 ~l~~A~~~g~~~~~~~Ll~-~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 12 DIVKATQYGIYERCRELVE-AG-YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp CHHHHHHTTCHHHHHHHHH-TT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHHHHcCChHHHHHHHH-cC-CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 4999999999999999999 33 557888999999999999999999999999999987667777799999999999999
Q ss_pred HHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC-HHHHHHHHhcCC
Q 005931 88 EVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH-TDIAREILEVRP 166 (669)
Q Consensus 88 eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~-~~iv~~Ll~~~~ 166 (669)
+++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..++ .++++.|++.+.
T Consensus 90 ~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~ 167 (240)
T 3eu9_A 90 SMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167 (240)
T ss_dssp HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC
T ss_pred HHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHHHhcCC
Confidence 9999999999887654 7888899999999888888888888776544 334445555555554333 445555555444
Q ss_pred cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931 167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232 (669)
Q Consensus 167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~ 232 (669)
+.....+..|.||||+|+..|+.+++++|+++|++++.. |..|.|||++|+..|+.++++.|++.
T Consensus 168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 432221124455555555555555555555555544433 44445555555555555544444443
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=286.08 Aligned_cols=216 Identities=24% Similarity=0.302 Sum_probs=118.4
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCcc-------ccccCCCCCcHHHHHHHcCCH-HHHHHHHhhCCccccccCC
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNH-EVSAFLMEANPTVATKLNH 106 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~-------~~~~n~~g~TpLh~Aa~~g~~-eivk~Ll~~~~~~~~~~~~ 106 (669)
.+|..+.++|+.||..|+.++|++|++.+.+. .+..+..|.||||.|+..++. .+++.|++.|++++.. |.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-SQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-CT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-CC
Confidence 45777788999999999999999998877542 345566778888888877665 3777788877776544 67
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc
Q 005931 107 ESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186 (669)
Q Consensus 107 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~ 186 (669)
+|.||||+|+..|+.+++++|++.+.+.. ..+..|.||++.|+..++.++++.|++.+.+. +..|..|.||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence 77777777777777777777777666554 34444566666666666666666666655543 45555666666666666
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcC
Q 005931 187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255 (669)
Q Consensus 187 g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~ 255 (669)
|+.+++++|+++|++++.. +..|.||||+|+..|+.++++.|++. +++++.+|..|+||||+|++++
T Consensus 163 g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 163 GHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTC
T ss_pred CCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCC
Confidence 6666666666666655544 55556666666665555555555443 3555555555555555555444
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-32 Score=282.19 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=129.8
Q ss_pred HHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHH
Q 005931 12 AIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSA 91 (669)
Q Consensus 12 Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk 91 (669)
++...+.+.+.+++... .++.+|..|.||||+||..|+.++|++|++.+++ ++.. +|.||||+|+..|+.++++
T Consensus 6 ~i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp TGGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred HHHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHH
Confidence 35667777777777622 3567778888888888888888888888887766 4444 3778888888888888888
Q ss_pred HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCC-CcHHHHHHHcCCHHHHHHHHhcCCcccC
Q 005931 92 FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVE-STPIYLAISRGHTDIAREILEVRPRFAG 170 (669)
Q Consensus 92 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 170 (669)
+|+++|+++... +..|.||||+|+..|+.+++++|++++.+.+ ..+..| .||||.|+..|+.+++++|++.++....
T Consensus 80 ~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 157 (285)
T 3kea_A 80 ILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD 157 (285)
T ss_dssp HHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC
T ss_pred HHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Confidence 888877776543 6677777777777777777777777665554 333334 4555555555555555555555544311
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChH-HHHHHHcCCHHHHHHHH
Q 005931 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP-LHLAAINGRVKILVAFL 230 (669)
Q Consensus 171 ~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tp-Lh~Aa~~g~~e~v~~LL 230 (669)
. ..|.||||+|+..|+.+++++|+++|++++.. |..|.|| ||+|+..|+.++++.|+
T Consensus 158 ~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll 215 (285)
T 3kea_A 158 L--AILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALF 215 (285)
T ss_dssp C--STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred c--cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHH
Confidence 1 14555555555555555555555555554443 4444444 45555444444444433
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.1e-32 Score=267.27 Aligned_cols=210 Identities=21% Similarity=0.220 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 005931 51 GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130 (669)
Q Consensus 51 g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~ 130 (669)
|+.+++++|++.++++.+..|..|.||||+|+..|+.+++++|++.|+++... +..|
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g---------------------- 58 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMG---------------------- 58 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTS----------------------
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCC----------------------
Confidence 44555555555555544444555666666666666666666666555554332 4444
Q ss_pred CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCC
Q 005931 131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG 210 (669)
Q Consensus 131 ~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g 210 (669)
.||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|++++.. +..|
T Consensus 59 ------------~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g 125 (223)
T 2f8y_A 59 ------------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLG 125 (223)
T ss_dssp ------------CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTS
T ss_pred ------------CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCC
Confidence 445555555555555555555444344555666667777777777777777777777666654 6667
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931 211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK 290 (669)
Q Consensus 211 ~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~ 290 (669)
.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..+
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~ 202 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH--FANRDITDHMDRLPRDIAQERM 202 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc--CCCCccccccCCCHHHHHHHhc
Confidence 7777777777777776666655 466667777777777777777777777777775 4566667777777777777777
Q ss_pred CHHHHHHHH
Q 005931 291 NYQFVEYII 299 (669)
Q Consensus 291 ~~~iv~~Ll 299 (669)
+.+++++|+
T Consensus 203 ~~~i~~~L~ 211 (223)
T 2f8y_A 203 HHDIVRLLD 211 (223)
T ss_dssp CHHHHHHHH
T ss_pred chHHHHHHH
Confidence 777777777
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.6e-32 Score=279.77 Aligned_cols=249 Identities=15% Similarity=0.125 Sum_probs=208.9
Q ss_pred cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHc
Q 005931 50 FGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129 (669)
Q Consensus 50 ~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~ 129 (669)
..+.+-+..++..+ + ++.+|..|.||||+|+..|+.+++++|++.|+++... +|.||||+|+..|+.+++++|++
T Consensus 9 ~~~~~~v~~lL~~~-~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp GCCHHHHHHHHHST-T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred hcCHHHHHHHHHhC-C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444444444443 3 6788999999999999999999999999999987655 58999999999999999999999
Q ss_pred CCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCC-ChHHHHHHhcCCHHHHHHHHhcCCccccccCC
Q 005931 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG-FSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208 (669)
Q Consensus 130 ~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~ 208 (669)
++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..| .||||+|+..|+.+++++|+++|++... ..
T Consensus 84 ~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~ 159 (285)
T 3kea_A 84 SGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LA 159 (285)
T ss_dssp TTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CS
T ss_pred CCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--cc
Confidence 998876 46778999999999999999999999998775 6778888 7999999999999999999999987732 23
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHH
Q 005931 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETV-FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV 287 (669)
Q Consensus 209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~-Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~ 287 (669)
.|.||||+|+..|+.++++.|+.. +.+++..|..|+|| ||+|+..++.+++++|++. +++++.+| +.|+
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~--gad~~~~~-------~~a~ 229 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSAN-------LENV 229 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS--CBCSTTTT-------GGGG
T ss_pred CCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc--CCCCCCCC-------hhhh
Confidence 889999999999999999888877 57889999999997 9999999999999999986 66777776 4677
Q ss_pred HcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDII 320 (669)
Q Consensus 288 ~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a 320 (669)
..++.+++++|+ +.|++++..+.. ..++++
T Consensus 230 ~~~~~~iv~~Ll-~~g~~~~~~~~~--~~~~~~ 259 (285)
T 3kea_A 230 LLDDAEIAKMII-EKHVEYKSDSYT--KDLDIV 259 (285)
T ss_dssp TTTCHHHHHHHH-HHHHHHTTCTTT--TTCHHH
T ss_pred hcCCHHHHHHHH-HcCCCCCCcccc--chHHHH
Confidence 889999999999 667777655543 334444
No 37
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-33 Score=280.43 Aligned_cols=223 Identities=23% Similarity=0.276 Sum_probs=146.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHH
Q 005931 69 AENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL 148 (669)
Q Consensus 69 ~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~ 148 (669)
.+|.++.+||+.||+.|+.++|++|++.++....... ......+..+.|||+.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~~~~t~L~~ 58 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADPEFCHPLCQ 58 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCccCCCHHHH
Confidence 4566778899999999999999999988765422100 0001223345667777
Q ss_pred HHHcCCH-HHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHH
Q 005931 149 AISRGHT-DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV 227 (669)
Q Consensus 149 A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~ 227 (669)
|+..+.. .+++.|++.+.+. +..|.+|.||||+|+..|+.+++++|++.++++... +.+|.||+|.|+..++.++++
T Consensus 59 a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~ 136 (269)
T 4b93_B 59 CPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVK 136 (269)
T ss_dssp ----------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHH
Confidence 6665554 3566666666553 666777888888888888888888888888877765 777888888888888888777
Q ss_pred HHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q 005931 228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY 307 (669)
Q Consensus 228 ~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~ 307 (669)
.|+.. +.+++.+|..|+||||+|+..|+.+++++|++. +.++|.+|..|+||||+|+..|+.++|++|+ +.|+|++
T Consensus 137 ~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~--gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~Gad~~ 212 (269)
T 4b93_B 137 CLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH--GASINASNNKGNTALHEAVIEKHVFVVELLL-LHGASVQ 212 (269)
T ss_dssp HHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCSC
T ss_pred HHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCccccCCCcHHHHHHHcCCHHHHHHHH-HCCCCCC
Confidence 66654 467788888888888888888888888888875 5677888888888888888888888888888 5677888
Q ss_pred cccCCCCCHHHHHHHcC
Q 005931 308 CRNHKNQTALDIIEQAG 324 (669)
Q Consensus 308 ~~n~~g~T~L~~a~~~~ 324 (669)
.+|.+|+|||++|.+.+
T Consensus 213 ~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 213 VLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp CCCTTSCCSGGGSCTTC
T ss_pred CcCCCCCCHHHHHHhCC
Confidence 88888888888886543
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=1.3e-31 Score=263.60 Aligned_cols=211 Identities=19% Similarity=0.236 Sum_probs=145.9
Q ss_pred CCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931 16 NDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95 (669)
Q Consensus 16 gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~ 95 (669)
|+.+.++.|++ .+.......|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEE-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHH-cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 56677778887 54455555689999999999999999999999999988 78899999999999999999999999999
Q ss_pred hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCC
Q 005931 96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKN 175 (669)
Q Consensus 96 ~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~ 175 (669)
.++......+..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 9885555567888888888888888888888888766544 33444555555555555555555555554442 344455
Q ss_pred CChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231 (669)
Q Consensus 176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~ 231 (669)
|.||||+|+..|+.+++++|+++|++++.. |..|.|||++|+.+|+.++++.|++
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCccc-cccCCCHHHHHHHhcchHHHHHHHH
Confidence 555555555555555555555555554443 4445555555555555555444443
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=1.1e-33 Score=295.88 Aligned_cols=263 Identities=14% Similarity=0.071 Sum_probs=203.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccc--------------
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATK-------------- 103 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~-------------- 103 (669)
..+.+|+| ....++|++|++.+.+ ++..+..|.|+++ |+.++|+.|+++|.+....
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~ 90 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 90 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------
T ss_pred cccccchh----hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccc
Confidence 33445555 4566789999999988 7788889999987 9999999999988664321
Q ss_pred --cCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHH
Q 005931 104 --LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLH 181 (669)
Q Consensus 104 --~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh 181 (669)
......+.+|+|+..+..+++++|++.+.+.+...+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||
T Consensus 91 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh 169 (327)
T 1sw6_A 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLV 169 (327)
T ss_dssp -------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHH
T ss_pred ccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence 01112234578888888899999999998887547888999999999999999999999998775 788999999999
Q ss_pred HHHhcCC---HHHHHHHHhcC-CccccccCCCCChHHHHHHH----cCCHHHHHHHHhcC-------------------C
Q 005931 182 YASSIGN---VNMTKLLLNHN-KDLALQYNKDGYTPLHLAAI----NGRVKILVAFLSSS-------------------P 234 (669)
Q Consensus 182 ~Aa~~g~---~eiv~~Ll~~g-~~~~~~~~~~g~tpLh~Aa~----~g~~e~v~~LL~~~-------------------~ 234 (669)
+|+..|+ .++++.|++.+ ++++.. |..|.||||+|+. .|+.++++.|++.. +
T Consensus 170 ~A~~~g~~~~~~~~~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g 248 (327)
T 1sw6_A 170 KAVKSVNNYDSGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248 (327)
T ss_dssp HHHHSSHHHHTTCHHHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----
T ss_pred HHHHhcccccHHHHHHHHHhhhccccCC-CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhccc
Confidence 9999998 67888888877 556654 9999999999999 89999999988763 7
Q ss_pred CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCC
Q 005931 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQ 314 (669)
Q Consensus 235 ~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~ 314 (669)
.+++..+..|.||||.|+. +++|++. ++|.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|..|+
T Consensus 249 ~~~~~~~~~g~t~L~~a~~------~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~Gad~~~~d~~G~ 317 (327)
T 1sw6_A 249 SKPNDKNGERKDSILENLD------LKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGL 317 (327)
T ss_dssp -----------CHHHHHCS------HHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSC
T ss_pred CCcccccccCCChhHHHHH------HHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCC
Confidence 8899999999999999985 8999986 58899999999999999999999999999 77999999999999
Q ss_pred CHHHHHHHc
Q 005931 315 TALDIIEQA 323 (669)
Q Consensus 315 T~L~~a~~~ 323 (669)
||||+|++.
T Consensus 318 TpL~~A~~~ 326 (327)
T 1sw6_A 318 RPVDFGAGL 326 (327)
T ss_dssp CGGGGTCC-
T ss_pred CHHHHHHhc
Confidence 999998754
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1e-31 Score=267.06 Aligned_cols=220 Identities=23% Similarity=0.254 Sum_probs=137.4
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcH
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLCPE---LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSA 111 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~---~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tp 111 (669)
++|..|.||||+|+..|+.+++++|++.+.. .++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCH
Confidence 4578888888888888888888888877653 36777888888888888888888888888888776554 6777888
Q ss_pred HHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHH
Q 005931 112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNM 191 (669)
Q Consensus 112 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei 191 (669)
||+|+..|+.+++++|++.+..... ....+..+..|.||||+|+..|+.++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHLASIHGYLGI 132 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHHHHHcCCHHH
Confidence 8888888888888887776543210 11124456667777777777777777
Q ss_pred HHHHHhcCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Q 005931 192 TKLLLNHNKDLALQYNK-DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC 270 (669)
Q Consensus 192 v~~Ll~~g~~~~~~~~~-~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~ 270 (669)
+++|+++|++++.. +. .|.||||+|+..|+.++++.|+.. +++++..|..|.||||+|+.+++.+++++|++.+...
T Consensus 133 v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 133 VELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp HHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred HHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence 77777777766654 33 566666666666665555555443 3444544555555555555555555555555443322
Q ss_pred CCccCCCCCCcHHHHH
Q 005931 271 LFHGQDQFGNTVLHLA 286 (669)
Q Consensus 271 ~in~~D~~G~TpLh~A 286 (669)
....++..|.||.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 211 LQMLPESEDEESYDTE 226 (236)
T ss_dssp GSSCCCCCTTTCCCCC
T ss_pred hhcCCccchHHHHhhh
Confidence 2233444444444433
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.8e-31 Score=279.07 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=198.8
Q ss_pred HHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccc-----------------cCCCCCcHHHH
Q 005931 18 KQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAA-----------------ENEKLETPLHE 80 (669)
Q Consensus 18 ~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~-----------------~n~~g~TpLh~ 80 (669)
.+.++.|++ .+..++.++..|.|+++ |+.++|+.|++.+.+ ++. +.....+.+|.
T Consensus 32 ~dlv~~ll~--~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1sw6_A 32 HDLTSDFLS--SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103 (327)
T ss_dssp TTCCCSTTT--SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------
T ss_pred CchHHHHhh--CCcccccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccchhHH
Confidence 344555555 34667888999999988 999999999998754 211 11112234588
Q ss_pred HHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC---HHH
Q 005931 81 ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH---TDI 157 (669)
Q Consensus 81 Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~---~~i 157 (669)
|+..+..+++++|++.|.+++...+..|.||||+|+..|+.++|++|++++.+.+ ..+..|.||||+|+..|+ .++
T Consensus 104 a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~ 182 (327)
T 1sw6_A 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGT 182 (327)
T ss_dssp CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTC
T ss_pred HHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHH
Confidence 8888899999999999999887469999999999999999999999999998887 677889999999999998 677
Q ss_pred HHHHHhcCCcccCCCCCCCChHHHHHHh----cCCHHHHHHHHhc--------------------CCccccccCCCCChH
Q 005931 158 AREILEVRPRFAGKTDKNGFSPLHYASS----IGNVNMTKLLLNH--------------------NKDLALQYNKDGYTP 213 (669)
Q Consensus 158 v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~----~g~~eiv~~Ll~~--------------------g~~~~~~~~~~g~tp 213 (669)
++.|++......+..|..|.||||+|+. .|+.+++++|++. |++++.. +..|.||
T Consensus 183 ~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~ 261 (327)
T 1sw6_A 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDS 261 (327)
T ss_dssp HHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CH
T ss_pred HHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCCh
Confidence 8888887755567889999999999999 8999999999987 7777765 8999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK 290 (669)
Q Consensus 214 Lh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~ 290 (669)
||.|+. ++.|+.. +++.+|..|+||||+|+.+|+.+++++|++. +++++.+|.+|+||||+|+..|
T Consensus 262 L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 262 ILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT--TCCTTCCCTTSCCGGGGTCC--
T ss_pred hHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcC
Confidence 999985 6777776 5889999999999999999999999999997 7789999999999999998764
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.5e-29 Score=248.99 Aligned_cols=205 Identities=24% Similarity=0.260 Sum_probs=168.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccc----cccCCCCCcHHH
Q 005931 39 SLNTALHLAARFGHVELVTEITKL-CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA----TKLNHESQSAFS 113 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~-~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~----~~~~~~g~tpL~ 113 (669)
.|+||||+||..|+.++|++|++. +.+ ++.+|..|+||||+|+..|+.+++++|++.+++.. ...+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 555 88899999999999999999999999999998863 234678999999
Q ss_pred HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHH
Q 005931 114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193 (669)
Q Consensus 114 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~ 193 (669)
+|+..|+.+++++|++++.+.+.. +.. +.+. ...+..|..|.||||+|+..|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSAR-ATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcc-cCC--ccee-------------------ecccccccCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999988776532 211 1110 112445678999999999999999999
Q ss_pred HHHhcCCccccccCCCCChHHHHHHHcCCHHHH----HHHHhcCCCCc------ccccCCCCcHHHHHHHcCCHHHHHHH
Q 005931 194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL----VAFLSSSPASF------DRLTTYGETVFHLAVRFDKYNAFKFL 263 (669)
Q Consensus 194 ~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v----~~LL~~~~~~i------~~~d~~g~t~Lh~Av~~~~~~iv~~L 263 (669)
+|+++|++++.. |.+|.||||+|+..|+.+++ +.|+..+ .+. +..|..|+||||+|++.|+.+++++|
T Consensus 139 ~Ll~~ga~~~~~-d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L 216 (232)
T 2rfa_A 139 LLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216 (232)
T ss_dssp HHHHTTCCTTCC-CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHCCCCCCCC-CCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999988876 88899999999999998877 5565554 444 57888999999999999999999999
Q ss_pred HHhcC
Q 005931 264 AESFN 268 (669)
Q Consensus 264 l~~~~ 268 (669)
++++.
T Consensus 217 l~~g~ 221 (232)
T 2rfa_A 217 MQKRK 221 (232)
T ss_dssp HHHHH
T ss_pred HhcCc
Confidence 98744
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.9e-29 Score=241.67 Aligned_cols=192 Identities=20% Similarity=0.236 Sum_probs=134.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR 117 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~ 117 (669)
..+.|+||.||..|+.+.++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHH
Confidence 456788888888888888888888777457777888888888888888888888888887776544 6677777777777
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC-----HHHH
Q 005931 118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN-----VNMT 192 (669)
Q Consensus 118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-----~eiv 192 (669)
.|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..++ .+++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 77777777777443322224555566667766666666666666666644445666666777777766665 6666
Q ss_pred HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231 (669)
Q Consensus 193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~ 231 (669)
++|+++|++++.. |..|.||||+|+.+|+.++++.|++
T Consensus 162 ~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 162 KLLMENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 7777666666654 6666666666666666666666654
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=7.4e-29 Score=245.58 Aligned_cols=198 Identities=20% Similarity=0.208 Sum_probs=145.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHH
Q 005931 73 KLETPLHEACCQGNHEVSAFLMEA-NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS 151 (669)
Q Consensus 73 ~g~TpLh~Aa~~g~~eivk~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 151 (669)
.|+||||+|++.|+.+++++|++. +.++... |..|.||||+|+..|+.+++++|++.+.+.....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------- 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEP------------- 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-------------
Confidence 478888888888888888888887 6555443 7777888888888888888888877665432100
Q ss_pred cCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccc------------cCCCCChHHHHHHH
Q 005931 152 RGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ------------YNKDGYTPLHLAAI 219 (669)
Q Consensus 152 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~------------~~~~g~tpLh~Aa~ 219 (669)
.+..|..|.||||+|+..|+.+++++|+++|++++.. .+..|.||||+|+.
T Consensus 68 -----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 130 (232)
T 2rfa_A 68 -----------------MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130 (232)
T ss_dssp -----------------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH
T ss_pred -----------------ccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH
Confidence 1233445566666666666666666666666555543 13478999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHH----HHHHHhcCCCC----CccCCCCCCcHHHHHHHcCC
Q 005931 220 NGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF----KFLAESFNTCL----FHGQDQFGNTVLHLAVLRKN 291 (669)
Q Consensus 220 ~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv----~~Ll~~~~~~~----in~~D~~G~TpLh~A~~~~~ 291 (669)
.|+.++++.|++. +.+++.+|..|+||||+|+..++.+++ ++|++.+.... .+.+|..|+||||+|+..|+
T Consensus 131 ~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 131 VGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence 9999998888865 578888999999999999999998888 88888643211 15788999999999999999
Q ss_pred HHHHHHHHHhc
Q 005931 292 YQFVEYIIKET 302 (669)
Q Consensus 292 ~~iv~~Ll~~~ 302 (669)
.+++++|++++
T Consensus 210 ~~~v~~Ll~~g 220 (232)
T 2rfa_A 210 IVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.1e-28 Score=238.57 Aligned_cols=189 Identities=24% Similarity=0.321 Sum_probs=126.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931 141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220 (669)
Q Consensus 141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~ 220 (669)
.+.||||.|+..|+.+.++.|+..++...+..|.+|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence 35566666666666666666666666445566666777777777777777777777777766654 66667777777777
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC-----HHHH
Q 005931 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN-----YQFV 295 (669)
Q Consensus 221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~-----~~iv 295 (669)
|+.++++.|+...+.+++..+..|.||||+|+..++.+++++|++.+ ..+++.+|..|+||||+|+..++ .+++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-REDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 77777777766666666666777777777777777777777777652 24566667777777777776665 6677
Q ss_pred HHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931 296 EYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332 (669)
Q Consensus 296 ~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l 332 (669)
++|+ +.|+|++.+|..|+|||++|...++.+.++.|
T Consensus 162 ~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 162 KLLM-ENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHH-HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 7777 45667777777777777777766655544333
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=7.3e-30 Score=253.69 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=154.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHH
Q 005931 70 ENEKLETPLHEACCQGNHEVSAFLMEANPT---VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146 (669)
Q Consensus 70 ~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L 146 (669)
.|..|.||||+|+..|+.+++++|++.+.. .....+..|.||||+|
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A------------------------------- 52 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA------------------------------- 52 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH-------------------------------
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH-------------------------------
Confidence 455566666666666666666666655432 1122244444444444
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCcc-----ccccCCCCChHHHHHHHcC
Q 005931 147 YLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDL-----ALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 147 ~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~-----~~~~~~~g~tpLh~Aa~~g 221 (669)
+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. ....+..|.||||+|+..|
T Consensus 53 ---~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 53 ---VITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp ---HHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred ---HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC
Confidence 4444445554444444432 445666777777777777777777777777542 2334888999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 222 RVKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~ 300 (669)
+.++++.|+..+ .+++..+. .|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+
T Consensus 129 ~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll- 204 (236)
T 1ikn_D 129 YLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQQLG- 204 (236)
T ss_dssp CHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH-
T ss_pred CHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccCCCCCHHHHHHccCchHHHHHHH-
Confidence 999999888765 78888887 999999999999999999999996 7788999999999999999999999999999
Q ss_pred hcCcccc--cccCCCCCHHHHHHH
Q 005931 301 ETVLDIY--CRNHKNQTALDIIEQ 322 (669)
Q Consensus 301 ~~~~d~~--~~n~~g~T~L~~a~~ 322 (669)
+.|++.. ..+..|.||.+.+..
T Consensus 205 ~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 205 QLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp TTSCGGGSSCCCCCTTTCCCCC--
T ss_pred HcchhhhhcCCccchHHHHhhhcc
Confidence 6777766 888999999876543
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=6.5e-29 Score=252.61 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=144.9
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHh----CCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCCcccc
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKL----CPELVA---AENEKLETPLHEACCQ---GNHEVSAFLMEANPTVAT 102 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~----~~~~~~---~~n~~g~TpLh~Aa~~---g~~eivk~Ll~~~~~~~~ 102 (669)
.+..|..|.|+||.||..|+.++|+.|++. +.++.. ..|..|.||||+|+.. |+.+++++|++.|++...
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 345689999999999999999999988874 333211 4578999999999987 999999999998865321
Q ss_pred ----------ccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCC
Q 005931 103 ----------KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT 172 (669)
Q Consensus 103 ----------~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~ 172 (669)
..|..|.||||+|+..|+.+++++|++++.+.+.. +..+. . ........
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~~~~ 144 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKGRPG 144 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSSSCC
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--cccccccc
Confidence 13457778888888888888888888777665422 22110 0 00011223
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCCcc--
Q 005931 173 DKNGFSPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAINGR---------VKILVAFLSSSPASFD-- 238 (669)
Q Consensus 173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~~g~---------~e~v~~LL~~~~~~i~-- 238 (669)
+..|.||||+|+..|+.+++++|++ +|++++.. |.+|.||||+|+..|+ .++++.|+..+ .+++
T Consensus 145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~ 222 (273)
T 2pnn_A 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPT 222 (273)
T ss_dssp CCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee-CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccc
Confidence 3467777777777777777777777 67777664 7777777777777766 56666666543 4443
Q ss_pred -----cccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcH
Q 005931 239 -----RLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282 (669)
Q Consensus 239 -----~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~Tp 282 (669)
..|..|+||||+|+..|+.+++++|++.+.. +.......+.+|
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-dp~~~~~~~~~~ 270 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-EPECRHAAAHHH 270 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC-Cchhhhhhhhhc
Confidence 4677777777777777777777777776331 333344444444
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.5e-28 Score=249.85 Aligned_cols=224 Identities=19% Similarity=0.250 Sum_probs=168.8
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhh----CCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHcCCCcccc
Q 005931 67 VAAENEKLETPLHEACCQGNHEVSAFLMEA----NPTVAT---KLNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEF 136 (669)
Q Consensus 67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~ 136 (669)
.+..|..|.||||.|++.|+.++|+.|++. +.++.. ..+..|.||||+|+.. |+.+++++|++.+.....
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 456788999999999999999999988874 333321 3477899999999976 889999999987654320
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCC--------
Q 005931 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK-------- 208 (669)
Q Consensus 137 ~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~-------- 208 (669)
++.+++.. ....|..|.||||+|+..|+.+++++|+++|++++.. +.
T Consensus 86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~ 140 (273)
T 2pnn_A 86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTK 140 (273)
T ss_dssp ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCS
T ss_pred ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-cccccccccc
Confidence 12223321 1234678999999999999999999999999998876 44
Q ss_pred ------CCChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCC
Q 005931 209 ------DGYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVRFDK---------YNAFKFLAESFNTCL 271 (669)
Q Consensus 209 ------~g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~ 271 (669)
.|.||||+|+..|+.++++.|+.. .+.+++.+|..|+||||+|+..++ .+++++|++. +.+
T Consensus 141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~ 218 (273)
T 2pnn_A 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--GAK 218 (273)
T ss_dssp SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHH
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--hhh
Confidence 799999999999999999999985 678999999999999999999988 7999999987 344
Q ss_pred Cc-------cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHH
Q 005931 272 FH-------GQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317 (669)
Q Consensus 272 in-------~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L 317 (669)
++ .+|..|+||||+|+..|+.+++++|++.+..|+......+.+|-
T Consensus 219 ~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 44 58999999999999999999999999666668888887777664
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.7e-28 Score=247.01 Aligned_cols=204 Identities=19% Similarity=0.170 Sum_probs=146.0
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHhCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHhhCCccccc----
Q 005931 39 SLNTALHLAARFGHVE----LVTEITKLCPELVAA----ENEKLETPLHEACCQ---GNHEVSAFLMEANPTVATK---- 103 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e----~vk~Ll~~~~~~~~~----~n~~g~TpLh~Aa~~---g~~eivk~Ll~~~~~~~~~---- 103 (669)
.|.||||.||..|+.+ ++++|++.+.+ ++. +|..|.||||+|+.. |+.+++++|++.|++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4789999999999997 55666778877 555 789999999999999 9999999999988776432
Q ss_pred ------cCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCC
Q 005931 104 ------LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGF 177 (669)
Q Consensus 104 ------~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~ 177 (669)
.|..|.||||+|+..|+.+++++|++++.+.+. .+..+.+ +......|..|.
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~---------------------~~~~~~~~~~g~ 137 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFF---------------------QKHQGTCFYFGE 137 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGG---------------------SCCSSSCCCSCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccccccc---------------------cccccccccCCC
Confidence 235677888888888888888888877766542 2222110 001122233477
Q ss_pred hHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHH--cCCHH-------HHHHHHhcCCCCc-------c
Q 005931 178 SPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAI--NGRVK-------ILVAFLSSSPASF-------D 238 (669)
Q Consensus 178 t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~--~g~~e-------~v~~LL~~~~~~i-------~ 238 (669)
||||+|+..|+.+++++|++ +|++++.. |.+|.||||+|+. .++.+ +++.|+..+ .++ +
T Consensus 138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~ 215 (256)
T 2etb_A 138 LPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEE 215 (256)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGG
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCccccccccc
Confidence 77777777777777777777 77777765 7777777777777 66666 666666543 455 6
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931 239 RLTTYGETVFHLAVRFDKYNAFKFLAESF 267 (669)
Q Consensus 239 ~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~ 267 (669)
.+|..|+||||+|+..|+.+++++|++++
T Consensus 216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 77777888888888888888888887763
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2.2e-28 Score=246.16 Aligned_cols=203 Identities=19% Similarity=0.209 Sum_probs=160.2
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHhhCCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHcCCCccccccCCCC
Q 005931 73 KLETPLHEACCQGNHE----VSAFLMEANPTVAT---KLNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEFEEDSVE 142 (669)
Q Consensus 73 ~g~TpLh~Aa~~g~~e----ivk~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~ 142 (669)
.|+||||.|+..|+.+ ++++|++.+.++.. ..+..|.||||+|+.. |+.+++++|++.+.+.+...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---- 76 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK---- 76 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS----
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh----
Confidence 3789999999999997 66777778888766 3488899999999988 88999999988775543111
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCC-------------
Q 005931 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD------------- 209 (669)
Q Consensus 143 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~------------- 209 (669)
.+++. .....|..|.||||+|+..|+.+++++|+++|++++.. +..
T Consensus 77 -----------------~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~ 135 (256)
T 2etb_A 77 -----------------PLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYF 135 (256)
T ss_dssp -----------------CGGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCS
T ss_pred -----------------hhccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccC
Confidence 00111 01234567889999999999999999999999888875 444
Q ss_pred CChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHH--cCCHH-------HHHHHHHhcCCCCC------
Q 005931 210 GYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVR--FDKYN-------AFKFLAESFNTCLF------ 272 (669)
Q Consensus 210 g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~--~~~~~-------iv~~Ll~~~~~~~i------ 272 (669)
|.||||+|+..|+.++++.|++. .+.+++.+|..|+||||+|+. .++.+ ++++|++. +.++
T Consensus 136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~--ga~~~~~~~~ 213 (256)
T 2etb_A 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM--GARLCPTVQL 213 (256)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHSTTCCG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc--CCCccccccc
Confidence 88999999999999998888875 678888889999999999998 77877 88999886 4455
Q ss_pred -ccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931 273 -HGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302 (669)
Q Consensus 273 -n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~ 302 (669)
+.+|..|+||||+|+..|+.+++++|++++
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 778889999999999999999999998443
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=3e-27 Score=221.80 Aligned_cols=159 Identities=28% Similarity=0.412 Sum_probs=122.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931 42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL 121 (669)
Q Consensus 42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 121 (669)
+.|+.||+.|+.++|+.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|+++... |..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence 468888888888888888888877 6788888888888888888888888888888877654 77888888888888888
Q ss_pred HHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 005931 122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201 (669)
Q Consensus 122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~ 201 (669)
+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++
T Consensus 84 ~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 88888888877665 45666778888888888888888888877664 66778888888888888888888888888887
Q ss_pred ccc
Q 005931 202 LAL 204 (669)
Q Consensus 202 ~~~ 204 (669)
+..
T Consensus 162 ie~ 164 (169)
T 4gpm_A 162 LEH 164 (169)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=7.1e-27 Score=219.30 Aligned_cols=159 Identities=26% Similarity=0.337 Sum_probs=132.8
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223 (669)
Q Consensus 144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~ 223 (669)
+.|+.|+..|+.++++.|++.+.+. +.+|.+|.||||+|+..++.+++++|+++|++++.. |.+|.||||+|+.+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence 3688888888888888888888774 677888999999999999999999999999988876 88899999999999999
Q ss_pred HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303 (669)
Q Consensus 224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~ 303 (669)
++++.|++. +++++.+|.+|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|+ +.|
T Consensus 84 ~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~G 159 (169)
T 4gpm_A 84 EVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGNEEVVKLLE-KQG 159 (169)
T ss_dssp HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-TC-
T ss_pred HHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence 988877765 478888899999999999999999999999986 6778888999999999999999999999998 667
Q ss_pred ccccc
Q 005931 304 LDIYC 308 (669)
Q Consensus 304 ~d~~~ 308 (669)
++++.
T Consensus 160 A~ie~ 164 (169)
T 4gpm_A 160 GWLEH 164 (169)
T ss_dssp -----
T ss_pred CCcCC
Confidence 67653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=3.4e-27 Score=237.93 Aligned_cols=206 Identities=18% Similarity=0.190 Sum_probs=161.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHH----hhCCccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHcCCCccccccCC
Q 005931 71 NEKLETPLHEACCQGNHEVSAFLM----EANPTVATK---LNHESQSAFSLAC---RQGHLDVVKLLINQSWLMEFEEDS 140 (669)
Q Consensus 71 n~~g~TpLh~Aa~~g~~eivk~Ll----~~~~~~~~~---~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~~~~~~~ 140 (669)
+..|.||||.|++.|+.+.++.|+ +.+.++... .+..|.||||+|+ ..|+.+++++|++.+......
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--- 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--- 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence 567889999999999999554444 478776544 1366889999888 678889999988876443210
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccC-------------
Q 005931 141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN------------- 207 (669)
Q Consensus 141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~------------- 207 (669)
..+++ ......|..|.||||+|+..|+.+++++|+++|++++.. +
T Consensus 79 ------------------~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~ 136 (260)
T 3jxi_A 79 ------------------REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGY 136 (260)
T ss_dssp ------------------HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCS
T ss_pred ------------------Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCccccccc
Confidence 01111 112445668999999999999999999999999998876 5
Q ss_pred -CCCChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCCC---
Q 005931 208 -KDGYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVRFDK---------YNAFKFLAESFNTCLF--- 272 (669)
Q Consensus 208 -~~g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~i--- 272 (669)
..|.||||+|+..|+.++++.|+.. .+.+++.+|..|+||||+|+..++ .+++++|++.+ .++
T Consensus 137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g--a~~~~~ 214 (260)
T 3jxi_A 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC--AKLFPD 214 (260)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH--HHHCTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC--cccccc
Confidence 5789999999999999998888875 678889999999999999998777 68999998873 334
Q ss_pred ----ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 273 ----HGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303 (669)
Q Consensus 273 ----n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~ 303 (669)
+.+|..|+||||+|+..|+.+++++|+++++
T Consensus 215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 6789999999999999999999999995443
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=2.4e-27 Score=239.07 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=133.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHH----hCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHHhhCCccc----
Q 005931 37 DASLNTALHLAARFGHVELVTEITK----LCPELVAAEN----EKLETPLHEAC---CQGNHEVSAFLMEANPTVA---- 101 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~----~~~~~~~~~n----~~g~TpLh~Aa---~~g~~eivk~Ll~~~~~~~---- 101 (669)
+..+.|+||.||..|+.+.|+.|++ .+.+ ++..+ ..|.||||+|+ +.|+.+++++|++.+++..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 4568899999999999996555544 7766 44433 77999999999 6799999999999875432
Q ss_pred ------cccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCC
Q 005931 102 ------TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKN 175 (669)
Q Consensus 102 ------~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~ 175 (669)
...|..|.||||+|+..|+.+++++|++.+.+.+..... +. ..+......+..
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~--------------------~~~~~~~~~~~~ 139 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG-RF--------------------FQPKDEGGYFYF 139 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEE-CC--------------------CSSSCCCCSCCS
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccc-cc--------------------cCcccccccccC
Confidence 112346677777777777777777777766555422110 00 000001112245
Q ss_pred CChHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCCc------
Q 005931 176 GFSPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAINGR---------VKILVAFLSSSPASF------ 237 (669)
Q Consensus 176 g~t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~~g~---------~e~v~~LL~~~~~~i------ 237 (669)
|.||||+|+..|+.+++++|++ +|++++.. |..|.||||+|+..|+ .++++.|+..+ .++
T Consensus 140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~ 217 (260)
T 3jxi_A 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNL 217 (260)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccch
Confidence 6677777777777777777776 66666654 6667777777776655 46655555443 333
Q ss_pred -ccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931 238 -DRLTTYGETVFHLAVRFDKYNAFKFLAESF 267 (669)
Q Consensus 238 -~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~ 267 (669)
+..|..|+||||+|++.|+.+++++|++++
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 556777777777777777777777777753
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=4.2e-29 Score=264.34 Aligned_cols=256 Identities=16% Similarity=0.099 Sum_probs=151.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccc--cccCCCCCcHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPEL--VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA--TKLNHESQSAF 112 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~--~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~--~~~~~~g~tpL 112 (669)
+.+++||||+||..|+.++|++|++.+... ....|..|.||||+||..|+.++|++|+++|++.. ...+.+ .|||
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence 445567777777777777777777766521 11234456677777777777777777777775311 111112 6777
Q ss_pred HHHHHcCCHHHHHHHHcCCCcccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931 113 SLACRQGHLDVVKLLINQSWLMEF-EEDSVESTPIYLAI-SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190 (669)
Q Consensus 113 ~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e 190 (669)
|+|+..|+.++|++|++++.+.+. ..+..|.||||.|+ ..|+.+++++|++.+. .|.||||+|+..|+.+
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence 777777777777777777765432 13444667777777 7777777777776431 2667777777777777
Q ss_pred HHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHH------------HHHHhcCCCCcccccCCCCcHHHHHHHcCCHH
Q 005931 191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL------------VAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258 (669)
Q Consensus 191 iv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v------------~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~ 258 (669)
++++|+++|++++.. + ++++.|+.+|+.+++ +.++... ..+..+
T Consensus 240 vv~lL~~~ga~~~~~-~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~-------------------~~~~~~ 295 (376)
T 2aja_A 240 VNPFIARHVNRLKEM-H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-------------------DEVLLD 295 (376)
T ss_dssp HHHHHHHHHHHHHHH-H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC-------------------CGGGHH
T ss_pred HHHHHHhcCcccccc-c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc-------------------hhhHHH
Confidence 777777777666543 1 356666666665532 2222221 112356
Q ss_pred HHHHHHHhcC-C--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931 259 AFKFLAESFN-T--CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA 329 (669)
Q Consensus 259 iv~~Ll~~~~-~--~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~ 329 (669)
.+++|++... . ......++.++||||+|+..|+.+++++|++. ...++..|+|++++|...+..+..
T Consensus 296 ~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~ 365 (376)
T 2aja_A 296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLR 365 (376)
T ss_dssp HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC----------------
T ss_pred HHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHH
Confidence 7777776421 0 01122345788999999999999999999953 467889999999999998876543
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=4.4e-26 Score=214.61 Aligned_cols=170 Identities=23% Similarity=0.301 Sum_probs=147.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCC
Confidence 4578999999999999999999888877888999999999999999999999999999998876 889999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~ 301 (669)
+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+ +
T Consensus 81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~-~ 156 (172)
T 3v30_A 81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR--GADLTTEADSGYTPMDLAVALGYRKVQQVIE-N 156 (172)
T ss_dssp CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-H
T ss_pred CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHhCcHHHHHHHH-H
Confidence 99998888865 578999999999999999999999999999996 6788899999999999999999999999999 7
Q ss_pred cCcccccccCCCCCH
Q 005931 302 TVLDIYCRNHKNQTA 316 (669)
Q Consensus 302 ~~~d~~~~n~~g~T~ 316 (669)
.++++..+|..|.||
T Consensus 157 ~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 HILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHSCC-------
T ss_pred HHHHHhcccCCCCCC
Confidence 777999999888887
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=7.5e-26 Score=217.17 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=120.5
Q ss_pred hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931 31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS 110 (669)
Q Consensus 31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t 110 (669)
..++.+|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t 103 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKT 103 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCc
Confidence 45677788899999999999999999999988877 6778888899999999999999999999888876544 777888
Q ss_pred HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e 190 (669)
|||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHH
Confidence 8888888888888888887766554 34455666666666666666666666655543 445556666666666666666
Q ss_pred HHHHHHhc
Q 005931 191 MTKLLLNH 198 (669)
Q Consensus 191 iv~~Ll~~ 198 (669)
++++|+++
T Consensus 182 ~v~~Ll~~ 189 (192)
T 2rfm_A 182 VIKIFTEV 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=234.23 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=136.5
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH----
Q 005931 76 TPLHEACCQGNHEVSAFLMEANPT-VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI---- 150 (669)
Q Consensus 76 TpLh~Aa~~g~~eivk~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~---- 150 (669)
+++|.|+..|+.+.++.+++.+.+ .....|..|.||||+|+..|+.+++++|++.+.......+..|.||||.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 455556666666666665554433 122235556666666666666666666666555222245555666666666
Q ss_pred -HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHH
Q 005931 151 -SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAF 229 (669)
Q Consensus 151 -~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~L 229 (669)
..++.++++.|++.+... ...|..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHH
Confidence 446677777777776543 566777888888888888888888888888888876 88888999999988988888888
Q ss_pred HhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931 230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267 (669)
Q Consensus 230 L~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~ 267 (669)
+...+.+++..|..|+||||+|+.+|+.+++++|+++.
T Consensus 236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 88677888888888999999999999999999888863
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=7.6e-26 Score=212.99 Aligned_cols=170 Identities=25% Similarity=0.307 Sum_probs=124.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931 40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG 119 (669)
Q Consensus 40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 119 (669)
+.||||.||..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCC
Confidence 4578888888888888888888887777788888888888888888888888888888776554 777888888888888
Q ss_pred CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q 005931 120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199 (669)
Q Consensus 120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g 199 (669)
+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 8888888887776655 44556777777777777777777777776654 566777777777777777777777777777
Q ss_pred CccccccCCCCChH
Q 005931 200 KDLALQYNKDGYTP 213 (669)
Q Consensus 200 ~~~~~~~~~~g~tp 213 (669)
++.... +..|.||
T Consensus 159 ~~~~~~-~~~~~~p 171 (172)
T 3v30_A 159 LKLFQS-NLVPADP 171 (172)
T ss_dssp HHHSCC--------
T ss_pred HHHhcc-cCCCCCC
Confidence 766543 5555554
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=231.97 Aligned_cols=195 Identities=21% Similarity=0.285 Sum_probs=168.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPE-LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~-~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
....+++|.|+..|+.+.++.+++.+.+ .++..|..|+||||+|+..|+.+++++|++.|+......+..|.||||+|+
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 3456788999999999999998876544 367888999999999999999999999999998445556889999999999
Q ss_pred -----HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHH
Q 005931 117 -----RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNM 191 (669)
Q Consensus 117 -----~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei 191 (669)
..++.+++++|++.+.... ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence 6788899999998886554 56667899999999999999999999998875 7789999999999999999999
Q ss_pred HHHHHh-cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005931 192 TKLLLN-HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235 (669)
Q Consensus 192 v~~Ll~-~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~ 235 (669)
+++|++ .|++++.. |.+|.||||+|+..|+.++++.|+++.+.
T Consensus 232 v~~Ll~~~gad~~~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 232 AGLLLAVPSCDISLT-DRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHHHTSTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCCcCc-CCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 999999 89998876 99999999999999999999999987653
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=1.4e-25 Score=208.79 Aligned_cols=159 Identities=21% Similarity=0.244 Sum_probs=123.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
...|+||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|++.|+++... +..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence 456788888888888888888887776 57777788888888887 8888888888887776544 77788888888888
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198 (669)
Q Consensus 119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~ 198 (669)
|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+..+..|..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 88888888888776655 45666778888888888888888888887776577788888888888888888888888888
Q ss_pred CCc
Q 005931 199 NKD 201 (669)
Q Consensus 199 g~~ 201 (669)
|++
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=5.8e-25 Score=205.87 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=118.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
.|.||||.||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence 478888888888888888888888766 7788888888888888888888888888888776544 77778888888888
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198 (669)
Q Consensus 119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~ 198 (669)
|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 88888888887766554 44555666666666666666666666665553 45566666666666666666666666666
Q ss_pred CCcc
Q 005931 199 NKDL 202 (669)
Q Consensus 199 g~~~ 202 (669)
+.+.
T Consensus 158 ~~~~ 161 (167)
T 3v31_A 158 LLKL 161 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.4e-24 Score=203.87 Aligned_cols=159 Identities=27% Similarity=0.366 Sum_probs=113.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
...+.|+||.||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Confidence 55667888888888888888888888877 6778888888888888888888888888888776544 677788888888
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll 196 (669)
..|+.+++++|++++.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 8888888887777766554 34445566666666666666666666655543 445556666666666666666666666
Q ss_pred hcC
Q 005931 197 NHN 199 (669)
Q Consensus 197 ~~g 199 (669)
+.|
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 543
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.92 E-value=7.1e-25 Score=210.37 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=86.3
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHH
Q 005931 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249 (669)
Q Consensus 170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh 249 (669)
+.+|..|.||||+|+..|+.+++++|++++++++.. +..|.||||+|+..|+.++++.|+..+ .+++..|..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHH
Confidence 344555555555555555555555555555555443 555555555555555555555555442 445555555555555
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931 250 LAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA 329 (669)
Q Consensus 250 ~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~ 329 (669)
+|+..++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||+++|...++.+.+
T Consensus 107 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 55555555555555554 4445555555555555555555555555555 33555555555555555555555554444
Q ss_pred HHH
Q 005931 330 TSL 332 (669)
Q Consensus 330 ~~l 332 (669)
+.|
T Consensus 184 ~~L 186 (192)
T 2rfm_A 184 KIF 186 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=2.7e-24 Score=201.30 Aligned_cols=153 Identities=23% Similarity=0.259 Sum_probs=89.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
|.||||.|+..|+.+++++|++.+.. .+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcC
Confidence 45566666666666666666665544 2455555666666666666666666666666555544 555566666666666
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
+.++++.|+.. +.+++..|..|.||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 66655555544 345555555566666666666666666666553 4445555556666666666666666666555
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=1.5e-24 Score=201.76 Aligned_cols=161 Identities=20% Similarity=0.228 Sum_probs=144.6
Q ss_pred CccccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHH
Q 005931 1 MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHE 80 (669)
Q Consensus 1 ~~~~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~ 80 (669)
|++.+..+|+.|+..|+.+.++.+++ . +..++.+|..|.||||+|+. |+.+++++|++.+.+ ++.+|..|.||||+
T Consensus 1 m~~~~~~~L~~A~~~g~~~~v~~Ll~-~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 1 MAEPWGNELASAAARGDLEQLTSLLQ-N-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHD 76 (162)
T ss_dssp ----CHHHHHHHHHHTCHHHHHHHTT-S-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CcchHhhHHHHHHHcCCHHHHHHHHh-C-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 67778888999999999999999998 3 35568889999999999999 999999999999988 78899999999999
Q ss_pred HHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931 81 ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160 (669)
Q Consensus 81 Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~ 160 (669)
|+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+++++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999887665 88999999999999999999999999987544677889999999999999999999
Q ss_pred HHhcCC
Q 005931 161 ILEVRP 166 (669)
Q Consensus 161 Ll~~~~ 166 (669)
|++++.
T Consensus 156 Ll~~GA 161 (162)
T 1ihb_A 156 MQANGA 161 (162)
T ss_dssp HHHTC-
T ss_pred HHHhCC
Confidence 999875
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.2e-27 Score=234.71 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=133.0
Q ss_pred hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931 33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF 112 (669)
Q Consensus 33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL 112 (669)
.+..+.++.|+||+||..|+.++|++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++... |..|.|||
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpL 91 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPL 91 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHH
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence 344467778888888888888888888888877 6778888888888888888888888888888876554 77788888
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHH--HHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931 113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA--ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190 (669)
Q Consensus 113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e 190 (669)
|+|+..|+.+++++|++.+.+.+...+..|.||||+| +..|+.+++++|++.+.+. +..|..|.|+++.++..+.
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~-- 168 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG-- 168 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSST--
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhccc--
Confidence 8888888888888888777766543344566777776 6666677777776666553 4556666666664444332
Q ss_pred HHHHHHhcCCcccc-ccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931 191 MTKLLLNHNKDLAL-QYNKDGYTPLHLAAINGRVKILVAFL 230 (669)
Q Consensus 191 iv~~Ll~~g~~~~~-~~~~~g~tpLh~Aa~~g~~e~v~~LL 230 (669)
.++|++.|+++.. ..|.+|.||||+|+.+|+.++++..+
T Consensus 169 -~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp -TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred -cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 2455666665321 23566666666666666666655433
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.5e-24 Score=202.55 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=127.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
|..|.|+||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHH
Confidence 6678889999999999999999988766667777888889999999999999999999988887654 778888888888
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll 196 (669)
..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+. |+.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHh
Confidence 8888888888888877665 45566778888888888888888888777664 6677788888888665 7778888888
Q ss_pred hcCC
Q 005931 197 NHNK 200 (669)
Q Consensus 197 ~~g~ 200 (669)
++|+
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 7764
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=2.6e-24 Score=204.04 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=139.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+.++|+.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcC
Confidence 5568888888888888888888877667788888889999999999999999999988888875 888889999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~ 301 (669)
+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+ +
T Consensus 84 ~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~-~ 159 (179)
T 3f6q_A 84 HRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLRELLRERAE-K 159 (179)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHHHHHHHHHHH-H
Confidence 98888877765 478888888899999999999999999999886 6678888889999999998888888888888 6
Q ss_pred cCcccccccCCC
Q 005931 302 TVLDIYCRNHKN 313 (669)
Q Consensus 302 ~~~d~~~~n~~g 313 (669)
.|++++..+..+
T Consensus 160 ~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 MGQNLNRIPYKD 171 (179)
T ss_dssp TTCCCSCBCCCC
T ss_pred hhcCcccCCccc
Confidence 777887766554
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=2.9e-24 Score=203.66 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=123.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR 117 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~ 117 (669)
..+.++||.||..|+.++|++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHH
Confidence 346677888888888888888888766667777778888888888888888888888877776554 6777788888888
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931 118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197 (669)
Q Consensus 118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~ 197 (669)
.|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++
T Consensus 82 ~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 888888888777776655 45566777777777777777777777777664 6667788888888888888888888888
Q ss_pred cCCccccc
Q 005931 198 HNKDLALQ 205 (669)
Q Consensus 198 ~g~~~~~~ 205 (669)
+|++++..
T Consensus 160 ~g~~~~~~ 167 (179)
T 3f6q_A 160 MGQNLNRI 167 (179)
T ss_dssp TTCCCSCB
T ss_pred hhcCcccC
Confidence 88877654
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=1.2e-23 Score=197.55 Aligned_cols=153 Identities=25% Similarity=0.423 Sum_probs=104.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+.++|+.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcC
Confidence 455666666666666666666666553 455666777777777777777777777777666654 666777777777777
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+
T Consensus 92 ~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 92 HLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 77776666654 356666677777777777777777777777765 4556667777777777777777777777776
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=1.1e-23 Score=194.16 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=89.7
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH 120 (669)
Q Consensus 41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 120 (669)
.|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence 46777777777777777777776652 2 4666777777777777777777777766665433 5556666666666666
Q ss_pred HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q 005931 121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200 (669)
Q Consensus 121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~ 200 (669)
.+++++|++++.+. +..|..|.||||+|+..|+.+++++|+++|+
T Consensus 80 ~~~v~~Ll~~g~~~-----------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 124 (153)
T 1awc_B 80 ANIVEVLLKHGADV-----------------------------------NAKDMLKMTALHWATEHNHQEVVELLIKYGA 124 (153)
T ss_dssp HHHHHHHHTTTCCT-----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCC-----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 66666666555443 3334445555555555555555555555555
Q ss_pred ccccccCCCCChHHHHHHHcCCHHHHHH
Q 005931 201 DLALQYNKDGYTPLHLAAINGRVKILVA 228 (669)
Q Consensus 201 ~~~~~~~~~g~tpLh~Aa~~g~~e~v~~ 228 (669)
+++.. |..|.||||+|+.+|+.++++.
T Consensus 125 ~~~~~-~~~g~t~l~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 125 DVHTQ-SKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp CTTCC-CTTSCCHHHHHHHTTCHHHHHH
T ss_pred Ccccc-CCCCCCHHHHHHHcCCHHHHHH
Confidence 55443 5555555555555555555443
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=8.8e-24 Score=195.31 Aligned_cols=153 Identities=24% Similarity=0.291 Sum_probs=129.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+.|+||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|+++|++++.. |..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence 34788888888888888888887444557778889999999 8889999999999999888875 888999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~ 300 (669)
+.++++.|+.. +.+++..|..|+||||+|+..|+.+++++|++. .+++.+|.+|.||||+|+..++.+++++|++
T Consensus 80 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99988877765 478888888999999999999999999999885 5778888899999999999999999998884
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=7.5e-24 Score=195.80 Aligned_cols=154 Identities=23% Similarity=0.287 Sum_probs=95.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931 40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG 119 (669)
Q Consensus 40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 119 (669)
+.|+||.||..|+.+++++|++.....++..|..|.||||+ +..|+.+++++|++.|+++... +..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence 45667777777777777777766333356666667777777 6667777777777766665443 566666666666666
Q ss_pred CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931 120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198 (669)
Q Consensus 120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~ 198 (669)
+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++. .+ .+..|.+|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 6666666666665443 3444455666666666666666666655 22 345555666666666666666666666543
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=1.5e-23 Score=193.33 Aligned_cols=149 Identities=26% Similarity=0.353 Sum_probs=91.0
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223 (669)
Q Consensus 144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~ 223 (669)
++|+.|+..|+.+++++|++.+.+.. .|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcChH
Confidence 45666666666666666666555431 3555666666666666666666666666665554 55666666666666666
Q ss_pred HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298 (669)
Q Consensus 224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L 298 (669)
++++.|+.. +.+++..|..|+||||+|+.+++.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 665555543 355666666666666666666666666666664 445556666666666666666666666654
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.7e-27 Score=230.81 Aligned_cols=160 Identities=17% Similarity=0.137 Sum_probs=108.1
Q ss_pred HHHHHHhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931 56 VTEITKLCPEL--VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133 (669)
Q Consensus 56 vk~Ll~~~~~~--~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~ 133 (669)
++.|++.+.+. .+..+..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+..|+.+++++|++.+.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 35667766542 3344556778888899999999999999888876554 77888888888888888888888887766
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHH--HhcCCHHHHHHHHhcCCccccccCCCCC
Q 005931 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA--SSIGNVNMTKLLLNHNKDLALQYNKDGY 211 (669)
Q Consensus 134 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--a~~g~~eiv~~Ll~~g~~~~~~~~~~g~ 211 (669)
.+ ..+..|.||||+|+..|+.+++++|++.+.+.....+.+|.||||+| +..|+.+++++|+++|++++.. |..|.
T Consensus 80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~~~~~ 157 (229)
T 2vge_A 80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NSGAV 157 (229)
T ss_dssp TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-GGGEE
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-cCCch
Confidence 65 45556777777777777777777777776665333335677777777 6777777777777777776654 56666
Q ss_pred hHHHHHH
Q 005931 212 TPLHLAA 218 (669)
Q Consensus 212 tpLh~Aa 218 (669)
+|++.++
T Consensus 158 ~~l~~~~ 164 (229)
T 2vge_A 158 YALWDYS 164 (229)
T ss_dssp EESSCBC
T ss_pred HHHHHHh
Confidence 6666443
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=4.8e-24 Score=199.18 Aligned_cols=153 Identities=21% Similarity=0.293 Sum_probs=98.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+.++|+.|+..|+.++++.|++..+......+..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHcC
Confidence 4456666666666666666665544444555566666666666666666666666666666654 666666666666666
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|.+|+||||+|+. ++.+++++|+
T Consensus 87 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 87 HYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred cHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 66666655543 356666666666777777777777777776664 45566666677777777555 6666666666
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=8.4e-26 Score=239.03 Aligned_cols=253 Identities=19% Similarity=0.174 Sum_probs=176.4
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchh-hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCc----cccccCCCCCcHHHHH
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKR-ILLQRDASLNTALHLAARFGHVELVTEITKLCPE----LVAAENEKLETPLHEA 81 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~-~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~----~~~~~n~~g~TpLh~A 81 (669)
.+|+.|+..|+.+.++.|++...+. .....+..|.||||+||..|+.++|++|++.+++ ..+..+ .||||+|
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~A 170 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLA 170 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHH
Confidence 4599999999999999999833211 1223456788999999999999999999999974 123333 8999999
Q ss_pred HHcCCHHHHHHHHhhCCcccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHH
Q 005931 82 CCQGNHEVSAFLMEANPTVAT-KLNHESQSAFSLAC-RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159 (669)
Q Consensus 82 a~~g~~eivk~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~ 159 (669)
|..|+.++|++|+++|+++.. ..+..|.||||+|+ ..|+.++|++|++.+.. +.|||+.|+..|+.++++
T Consensus 171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHH
T ss_pred HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHH
Confidence 999999999999999998765 24778999999999 99999999999996632 679999999999999999
Q ss_pred HHHhcCCcccCCCCCCCChHHHHHHhcCCHHH------------HHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHH
Q 005931 160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNM------------TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV 227 (669)
Q Consensus 160 ~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei------------v~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~ 227 (669)
+|++.+.+.. . ..++++.|+..|+.++ ++.|+..+. .+..+.++
T Consensus 243 lL~~~ga~~~-~----~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~ 298 (376)
T 2aja_A 243 FIARHVNRLK-E----MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-------------------EVLLDDIR 298 (376)
T ss_dssp HHHHHHHHHH-H----HHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-------------------GGGHHHHH
T ss_pred HHHhcCcccc-c----ccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-------------------hhHHHHHH
Confidence 9999876542 2 1247888888888663 344444431 12245556
Q ss_pred HHHhcCCCC----cccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 228 AFLSSSPAS----FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299 (669)
Q Consensus 228 ~LL~~~~~~----i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll 299 (669)
.|+...... .......+.|+||+|+..|+.+++++|++.+ ..+|..|+|++.+|-..|..++.+.-+
T Consensus 299 ~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-----SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp HHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH-----HHHHSCC--------------------
T ss_pred HHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh-----HHHHHHHHhccccccccccccHHHHHH
Confidence 665432211 1122345678999999999999999999852 456788999999999999888776544
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=8.9e-24 Score=210.29 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=115.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931 141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220 (669)
Q Consensus 141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~ 220 (669)
.|.||||.|+..++.+.++.|++++.+.. .+..|.||||.|+..|+.+++++|++.|++++.. |..|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence 36677777777777777777777766652 2356788888888888888888888888887765 88888888888888
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC-cHHHHH--HHcCCHHHHHH
Q 005931 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGN-TVLHLA--VLRKNYQFVEY 297 (669)
Q Consensus 221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~-TpLh~A--~~~~~~~iv~~ 297 (669)
|+.++++.|+.. +.+++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|. ||||+| +..|+.+++++
T Consensus 81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 888888887766 577888888888888888888888888888886 667788887776 999988 77788889998
Q ss_pred HHHhcCcccccc---------cCCCCCHHHHHHHcC
Q 005931 298 IIKETVLDIYCR---------NHKNQTALDIIEQAG 324 (669)
Q Consensus 298 Ll~~~~~d~~~~---------n~~g~T~L~~a~~~~ 324 (669)
|+ ..+++++.. +..+.++++++...+
T Consensus 158 Ll-~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 158 LY-GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp HH-HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred HH-HhhhcccccccceEEEEeccCCCCCCcccccCC
Confidence 88 556677665 455666666655444
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=1.2e-23 Score=209.47 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931 38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR 117 (669)
Q Consensus 38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~ 117 (669)
..|.||||.|+..|+.+.++.|++.+.++ +. +..|.||||.|+..|+.+++++|++.|+++... |..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHH
Confidence 34667777777777777777777766652 32 345667777777777777777777776655443 6666677777777
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCC-hHHHHH--HhcCCHHHHHH
Q 005931 118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGF-SPLHYA--SSIGNVNMTKL 194 (669)
Q Consensus 118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--a~~g~~eiv~~ 194 (669)
.|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 777777776666665554 34445666666666666666666666666554 33333333 666666 55566666666
Q ss_pred HHhcCCccc
Q 005931 195 LLNHNKDLA 203 (669)
Q Consensus 195 Ll~~g~~~~ 203 (669)
|+++|++++
T Consensus 158 Ll~~~a~~~ 166 (239)
T 1ycs_B 158 LYGVQEKMG 166 (239)
T ss_dssp HHHHHHHTT
T ss_pred HHHhhhccc
Confidence 666655544
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=1.8e-22 Score=186.83 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCc-HH
Q 005931 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET-VF 248 (669)
Q Consensus 170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t-~L 248 (669)
...+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+ .|+.++++.|+.. +.+++.+|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence 445778999999999999999999999999998876 889999999985 8999998888876 5889999999999 99
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931 249 HLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII 320 (669)
Q Consensus 249 h~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a 320 (669)
|+|+..|+.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||.+-+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLR-AAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS-SCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHH-HcCCCCCccCcCcCcccccC
Confidence 999999999999999997 6788999999999999999999999999999 78999999999999997743
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.86 E-value=1.9e-21 Score=175.41 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=111.0
Q ss_pred cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-CCcH
Q 005931 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY-GETV 247 (669)
Q Consensus 169 ~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~-g~t~ 247 (669)
.+..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+. |+.++++.|+..+ .+++..|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence 4667788899999999999999999999998888875 8888999999998 9999888888754 678888888 8999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 005931 248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVL 304 (669)
Q Consensus 248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~ 304 (669)
||+|+..++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+ +.|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLH-AATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH-HHHC
T ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCC
Confidence 9999999999999999986 6678888999999999999999999999998 4443
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.85 E-value=1.6e-21 Score=175.79 Aligned_cols=130 Identities=23% Similarity=0.251 Sum_probs=91.2
Q ss_pred hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCC-CCc
Q 005931 32 ILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHE-SQS 110 (669)
Q Consensus 32 ~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~-g~t 110 (669)
.++.++..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+. |+.+++++|++.|+++... +.. |.|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCC
Confidence 3566677888888888888888888888888776 67777788888888888 8888888888887776554 555 677
Q ss_pred HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~ 165 (669)
|||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..++.+++++|++++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 7777777777777777777665544 33444555555555555555555555543
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=9.7e-22 Score=187.35 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=84.3
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHH----HHHHHHhcCCCCcccccCCCCcHHHHHHH
Q 005931 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK----ILVAFLSSSPASFDRLTTYGETVFHLAVR 253 (669)
Q Consensus 178 t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e----~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~ 253 (669)
++|+.|+..|+.+.++.+++.+.+. ..+..|.||||+|+.+|+.+ +++.|+. .|++++.+|..|+||||+|+.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Confidence 3444444444444444444443221 11133445555555444432 3333332 234455555555555555554
Q ss_pred cCC------HHHHHHHHHhcCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931 254 FDK------YNAFKFLAESFNTCLFHGQDQFGN-TVLHLAVLRK-----NYQFVEYIIKETVLDIYCRNHKNQTALDIIE 321 (669)
Q Consensus 254 ~~~------~~iv~~Ll~~~~~~~in~~D~~G~-TpLh~A~~~~-----~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~ 321 (669)
.++ .+++++|++. ++++|.+|..|+ ||||+|+..+ +.+++++|+++.|+|++.+|..|+||||+|.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 443 3556666664 556666666666 6666666633 2346666663366677777777777777776
Q ss_pred HcCCCchHHHHHHHHHHhC
Q 005931 322 QAGTNDDATSLKKLFKTAG 340 (669)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~ 340 (669)
+.++.+.++.|.++....+
T Consensus 163 ~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 6666666666666555443
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=1.9e-21 Score=185.33 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHhCCHHHHHHHHcCcchhhhcccC-CCCChHHHHHHHcCCH----HHHHHHHHhCCccccccCCCCCcHHHHHH
Q 005931 8 NLSEAIVRNDKQALINLVGCSNKRILLQRD-ASLNTALHLAARFGHV----ELVTEITKLCPELVAAENEKLETPLHEAC 82 (669)
Q Consensus 8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d-~~g~T~Lh~Aa~~g~~----e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa 82 (669)
.||.|++.|+.+.++.+++ .+ .+.++ ..|.||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|+
T Consensus 9 ~l~~Aa~~g~~~~~~~l~~-~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 9 TVSAAAMLGTYEDFLELFE-KG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF 83 (186)
T ss_dssp SHHHHHHHSCHHHHHHHHH-HS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh-cC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence 3788888888888888777 32 23444 6688888888888864 478888888877 7777888888888888
Q ss_pred HcCC------HHHHHHHHhhCCccccccCCCCC-cHHHHHHHcCC-----HHHHHHHHc-CCCccccccCCCCCcHHHHH
Q 005931 83 CQGN------HEVSAFLMEANPTVATKLNHESQ-SAFSLACRQGH-----LDVVKLLIN-QSWLMEFEEDSVESTPIYLA 149 (669)
Q Consensus 83 ~~g~------~eivk~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~eiv~~Ll~-~~~~~~~~~~~~~~t~L~~A 149 (669)
..|+ .+++++|+++|++++.. |..|. ||||+|+..+. .+++++|++ .+.+.+ ..+..|.||||+|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCCCCCCHHHHH
Confidence 8776 56778888877777654 66777 77777776432 335555555 444443 3344444444444
Q ss_pred HHcCCHHHHHHHHh
Q 005931 150 ISRGHTDIAREILE 163 (669)
Q Consensus 150 ~~~g~~~iv~~Ll~ 163 (669)
+..|+.+++++|.+
T Consensus 162 ~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 162 KRCQKPIALKMMED 175 (186)
T ss_dssp HTTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44444444444443
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.84 E-value=4.5e-21 Score=177.32 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=67.9
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHH
Q 005931 36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLA 115 (669)
Q Consensus 36 ~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A 115 (669)
.+..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+ .|+.+++++|++.|+++... +..
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~-------- 76 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPA-------- 76 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTT--------
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCC--------
Confidence 344555555555555555555555555544 4445555555555543 55555555555555444322 333
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCc-HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931 116 CRQGHLDVVKLLINQSWLMEFEEDSVEST-PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194 (669)
Q Consensus 116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~ 194 (669)
|.| |||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++
T Consensus 77 --------------------------g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~ 129 (156)
T 1bi7_B 77 --------------------------TLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARY 129 (156)
T ss_dssp --------------------------TCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred --------------------------CCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHH
Confidence 444 555555555555555555554443 4456666677777777777777777
Q ss_pred HHhcCCccccccCCCCChHHH
Q 005931 195 LLNHNKDLALQYNKDGYTPLH 215 (669)
Q Consensus 195 Ll~~g~~~~~~~~~~g~tpLh 215 (669)
|+++|++++.. +..|.||.+
T Consensus 130 Ll~~ga~~~~~-~~~g~t~~~ 149 (156)
T 1bi7_B 130 LRAAAGGTRGS-NHARIDAAE 149 (156)
T ss_dssp HSSCC----------------
T ss_pred HHHcCCCCCcc-CcCcCcccc
Confidence 77777766654 666666655
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.84 E-value=2.3e-20 Score=168.24 Aligned_cols=125 Identities=24% Similarity=0.327 Sum_probs=95.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
...+.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHH
Confidence 56678888888888888888888888877 6778888888888888888888888888888776554 677788888888
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ 164 (669)
..|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 8888888888777766554 3445566666666666666666666654
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.83 E-value=4.5e-20 Score=163.20 Aligned_cols=125 Identities=34% Similarity=0.525 Sum_probs=106.8
Q ss_pred CCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc
Q 005931 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF 254 (669)
Q Consensus 175 ~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~ 254 (669)
+|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..|+.++++.|+.. +.+++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence 4788999999999999999999888888765 88889999999999999988877765 467888888899999999999
Q ss_pred CCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 005931 255 DKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVL 304 (669)
Q Consensus 255 ~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~ 304 (669)
++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+ +.|+
T Consensus 79 ~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA 125 (126)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTC
T ss_pred ChHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHH-HcCC
Confidence 999999999986 6677888899999999999999999999998 4444
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=2.4e-20 Score=168.16 Aligned_cols=125 Identities=23% Similarity=0.343 Sum_probs=107.3
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHH
Q 005931 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251 (669)
Q Consensus 172 ~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~A 251 (669)
....+.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|.||||+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHH
Confidence 3456788999999999999999999999888775 88899999999999999988888765 578888888999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 252 VRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300 (669)
Q Consensus 252 v~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~ 300 (669)
+..++.+++++|++. +.+++.+|.+|+||||+|+..++.+++++|++
T Consensus 88 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 88 AFIGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp HHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 999999999999986 66778889999999999999999999999884
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.83 E-value=5.7e-20 Score=162.54 Aligned_cols=124 Identities=37% Similarity=0.554 Sum_probs=76.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHc
Confidence 366777777777777777777777666 5666677777777777777777777777776665433 55566666666666
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165 (669)
Q Consensus 119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~ 165 (669)
|+.+++++|++++.+.+ ..+..|.|||+.|+..++.+++++|++.+
T Consensus 79 ~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 66666666665554433 23333444444444444444444444443
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=1.7e-20 Score=187.18 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=122.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
+..|.||||+||..|+.++|+.|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++|++++...+..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4578899999999999999999999 666 78889999999999999999999999999999987764588999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll 196 (669)
..|+.+++++|++++.+.+ ..+..|.||||+|+..+. ...+.||||+|+..|+.+++++|+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence 9999999999999988776 567779999999985221 245788999999999999999998
Q ss_pred hcCCc
Q 005931 197 NHNKD 201 (669)
Q Consensus 197 ~~g~~ 201 (669)
+++.+
T Consensus 181 ~~~~~ 185 (244)
T 3ui2_A 181 GQVFE 185 (244)
T ss_dssp HHHEE
T ss_pred Hhccc
Confidence 86543
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=2.5e-20 Score=177.20 Aligned_cols=141 Identities=21% Similarity=0.187 Sum_probs=123.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
+..|.||||+||..|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++....+..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 5688999999999999999999999 666 78899999999999999999999999999999987764588999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll 196 (669)
..|+.+++++|++++.+.+ ..+..|.||||+|+..++. ..+.++|++|+..|+.+++++|.
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence 9999999999999988776 5677899999999874321 34678999999999999999987
Q ss_pred hc
Q 005931 197 NH 198 (669)
Q Consensus 197 ~~ 198 (669)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 65
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=4.1e-20 Score=181.39 Aligned_cols=138 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252 (669)
Q Consensus 173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av 252 (669)
+..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.++++.|+...+.+++..|..|+||||+|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 567899999999999999999999999998876 8999999999999999999999998878999999999999999999
Q ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCC
Q 005931 253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQ 314 (669)
Q Consensus 253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~ 314 (669)
..|+.+++++|++. +.+++.+|.+|+||||+|+..++.++++.|+ ..+++.+.+|.+|+
T Consensus 149 ~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~-~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 149 WKGYADIVQLLLAK--GARTDLRNIEKKLAFDMATNAACASLLKKKQ-GTDAVRTLSNAEDY 207 (222)
T ss_dssp HHTCHHHHHHHHHH--TCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HcCCHHHHHHHHHc--CCCCccccCCCCCHHHHhcchhHHHHHHHHh-ccchhhhccchhhh
Confidence 99999999999997 6788999999999999999999999999998 66667777666543
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=7.5e-21 Score=189.73 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=87.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
|.||||.|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 4556666666666666666665 333 34556666666666666666666666666666666553356666666666666
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~ 301 (669)
+.++++.|+.. +.+++..|..|+||||+|+..++. ..+.||||+|+..|+.+++++|++.
T Consensus 123 ~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 123 RPEVVEALVEL-GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence 66666666554 456666666666776666653322 2357788888888888888877743
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=8.7e-20 Score=164.55 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252 (669)
Q Consensus 173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av 252 (669)
|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHH
Confidence 444555555555555555555555555544443 44455555555555555544444432 2444444444555555555
Q ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931 253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298 (669)
Q Consensus 253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L 298 (669)
..++.+++++|++. +.+++.+|..|+||||+|+..+..+++++|
T Consensus 85 ~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 85 KNGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HTTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 55555555555443 334444445555555555444444444433
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=7.2e-20 Score=165.10 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=76.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL 114 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~ 114 (669)
.+|..|.||||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHHH
Confidence 3466677777777777777777777777666 5666677777777777777777777777776665443 5556666666
Q ss_pred HHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160 (669)
Q Consensus 115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~ 160 (669)
|+..|+.+++++|++.+.+.+ ..+..|.|||++|+..+..+++++
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~ 127 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLL 127 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhh
Confidence 666666666666665555443 334445555555554444444433
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=4.7e-19 Score=156.55 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=86.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
+..|.|+||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHH
Confidence 45678888888888888888888888877 6778888888888888888888888888888776554 777888888888
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI 150 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 150 (669)
..|+.+++++|++++.+.+ ..+..|.||||+|.
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhC
Confidence 8888888888887776654 45566777777773
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=180.25 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCChHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCc
Q 005931 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTYGET 246 (669)
Q Consensus 175 ~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~g~t 246 (669)
...++|+.|+..|+.+.++.|++.|++++.. .+..|.||||+|+.. |+.++++.|+.. +.+++.+|..|+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence 3457788888888888888888888887763 477888899998886 788888888776 4788888888999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCC
Q 005931 247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTN 326 (669)
Q Consensus 247 ~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~ 326 (669)
|||+|+..|+.+++++|++. +++++.+|.+|+||||+|+..++.+++++|++ .+++ .|.||||+|+..++.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCCc
Confidence 99999999999999999886 67788888889999999999999999998884 4433 578999988877653
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=180.13 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=113.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHcCCCccccccCCCCCc
Q 005931 73 KLETPLHEACCQGNHEVSAFLMEANPTVATK-----LNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEFEEDSVEST 144 (669)
Q Consensus 73 ~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t 144 (669)
.+.++|+.|+..|+.+.++.|++.|+++... .+..|.||||+|+.. ++.+++++|++++.+.+ ..+..|.|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCCC
Confidence 3457799999999999999999888887653 477889999999987 88999999998888776 46677899
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223 (669)
Q Consensus 145 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~ 223 (669)
|||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 999999999999999999988775 67888999999999999999999999998876 367899999988864
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.77 E-value=5.4e-19 Score=167.95 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTD-KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220 (669)
Q Consensus 142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~ 220 (669)
|.||||+|+..|+.+++++|++.+.+. +..| .+|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 76 GRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREI 153 (183)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHh
Confidence 444444444444444444444444333 2222 45555555555555555555555555555543 55555555555542
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265 (669)
Q Consensus 221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~ 265 (669)
++. ..+.++|++|+..|+.+++++|.+
T Consensus 154 ~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 154 LKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp HHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 211 223455555555555555555544
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.77 E-value=9.1e-19 Score=154.69 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH
Q 005931 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL 288 (669)
Q Consensus 209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~ 288 (669)
.|.||||.|+..|+.++++.|+... .+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|+||||+|+.
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHH
Confidence 3445555555555555555544432 34555555555555555555555555555553 34455555555555555555
Q ss_pred cCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931 289 RKNYQFVEYIIKETVLDIYCRNHKNQTALDII 320 (669)
Q Consensus 289 ~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a 320 (669)
.++.+++++|+ +.|++++.+|..|+||+++|
T Consensus 83 ~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLL-SKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHh
Confidence 55555555555 33555555555555555555
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.76 E-value=1e-17 Score=170.18 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=99.6
Q ss_pred CChHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCcH
Q 005931 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTYGETV 247 (669)
Q Consensus 176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~g~t~ 247 (669)
..++|+.|+..|+.+.+..+++.|.+++.. .+..|.||||+|+.. |+.++++.|+.. +++++.+|..|+||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence 346788888888888888888888875433 267788888888888 788887777766 47788888888888
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931 248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302 (669)
Q Consensus 248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~ 302 (669)
||+|+.+|+.+++++|++. +++++.+|.+|.||||+|+..|+.+++++|++.+
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 8888888888888888885 6678888888888888888888888888888443
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.76 E-value=4.3e-19 Score=174.06 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCccccccCCCCCcHHHHH
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA-NPTVATKLNHESQSAFSLA 115 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~-~~~~~~~~~~~g~tpL~~A 115 (669)
+..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+||..|+.+++++|++. |.++... |..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCCCHHHHH
Confidence 44455555555555555555555555554 455555555555555555555555555555 4443322 44445555555
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHH
Q 005931 116 CRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195 (669)
Q Consensus 116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~L 195 (669)
+..|+.++++ +|++.+.+. +..|.+|.||||+|+..|+.++++.|
T Consensus 148 ~~~~~~~~v~----------------------------------~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l 192 (222)
T 3ehr_A 148 AWKGYADIVQ----------------------------------LLLAKGART-DLRNIEKKLAFDMATNAACASLLKKK 192 (222)
T ss_dssp HHHTCHHHHH----------------------------------HHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred HHcCCHHHHH----------------------------------HHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHH
Confidence 5555544444 444444432 34455555555555555555555555
Q ss_pred HhcCCccc
Q 005931 196 LNHNKDLA 203 (669)
Q Consensus 196 l~~g~~~~ 203 (669)
++.++...
T Consensus 193 ~~~~~~~~ 200 (222)
T 3ehr_A 193 QGTDAVRT 200 (222)
T ss_dssp --------
T ss_pred hccchhhh
Confidence 55555444
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.75 E-value=4.3e-18 Score=172.95 Aligned_cols=193 Identities=14% Similarity=0.138 Sum_probs=142.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHH
Q 005931 70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA 149 (669)
Q Consensus 70 ~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A 149 (669)
.|..+.++++.+...||..+.+++...-+.........+.... .....-..+++................++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 5667888999999999988777665433222110011111111 111111222333322211111111234689999
Q ss_pred HHcCCHHHHHHHHhcCCccc-----CCCCCCCChHHHHHHhc---CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931 150 ISRGHTDIAREILEVRPRFA-----GKTDKNGFSPLHYASSI---GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221 (669)
Q Consensus 150 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~Aa~~---g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g 221 (669)
+..|+.+.++.+++.+.+.. +..|..|.||||+|+.. |+.+++++|+++|++++.. |.+|.||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcC
Confidence 99999999999999888753 34488899999999999 8999999999999999986 999999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268 (669)
Q Consensus 222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~ 268 (669)
+.++++.|+. .+++++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus 217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999888887 568999999999999999999999999999999744
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.74 E-value=1.1e-17 Score=139.87 Aligned_cols=92 Identities=40% Similarity=0.586 Sum_probs=83.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931 39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ 118 (669)
Q Consensus 39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 118 (669)
+|.||||+||..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+++... |..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHc
Confidence 488999999999999999999999988 7889999999999999999999999999999987655 88999999999999
Q ss_pred CCHHHHHHHHcCCC
Q 005931 119 GHLDVVKLLINQSW 132 (669)
Q Consensus 119 g~~eiv~~Ll~~~~ 132 (669)
|+.+++++|++.++
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 99999999998774
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=2.2e-17 Score=173.84 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=116.1
Q ss_pred CCCCChHHHHHHhc-CCHHHHHHHHhcCCccccccC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHH
Q 005931 173 DKNGFSPLHYASSI-GNVNMTKLLLNHNKDLALQYN--KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249 (669)
Q Consensus 173 d~~g~t~Lh~Aa~~-g~~eiv~~Ll~~g~~~~~~~~--~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh 249 (669)
+..+.|+||.|+.. |+.++++.|+++|++++.. + ..|.||||+|+..|+.++++.|+.. +++++..|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence 34567899999999 9999999999999999976 5 8899999999999999999888876 6899999999999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC--cccccccCCCCCHHHHHHHc
Q 005931 250 LAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV--LDIYCRNHKNQTALDIIEQA 323 (669)
Q Consensus 250 ~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~--~d~~~~n~~g~T~L~~a~~~ 323 (669)
+|+..|+.+++++|++. +++++.+|.+|+||||+|+..++.+++++|+.... .+....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~--Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKR--GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHC--cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999997 77889999999999999999999999999995542 34456667888998887653
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.71 E-value=4.6e-17 Score=179.63 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCCcccccc------CCCCCcHHHHHHH---cCCHHHHHHHHhhCCccccccCCC
Q 005931 37 DASLNTALHLAARFGHVELVTEITKLCPELVAAE------NEKLETPLHEACC---QGNHEVSAFLMEANPTVATKLNHE 107 (669)
Q Consensus 37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~------n~~g~TpLh~Aa~---~g~~eivk~Ll~~~~~~~~~~~~~ 107 (669)
.....+.||.|+..|+.+.|+.|++.+++ ++.. |..|.||||+||. .|+.+++++|+++|++++.. |..
T Consensus 129 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~-d~~ 206 (497)
T 3lvq_E 129 CTPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AAD 206 (497)
T ss_dssp CC-CHHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC-CSS
T ss_pred ccccHHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc-CCC
Confidence 44445788888888888888888888877 4444 7778888888865 88888888888888877654 778
Q ss_pred CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHh
Q 005931 108 SQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASS 185 (669)
Q Consensus 108 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~ 185 (669)
|.||||+|+..|+.+++++|++++++.+ ..+..|.||||+|+..|+.+++++|++.+.+... +|+|.+..
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~~~~ 276 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHVDYS 276 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Ccceeecc
Confidence 8888888888888888888888887766 5566788888888888888888888888776522 57776654
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=5e-17 Score=171.10 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=74.6
Q ss_pred CChHHHHHHHc-CCHHHHHHHHHhCCccccccC--CCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931 40 LNTALHLAARF-GHVELVTEITKLCPELVAAEN--EKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC 116 (669)
Q Consensus 40 g~T~Lh~Aa~~-g~~e~vk~Ll~~~~~~~~~~n--~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~ 116 (669)
+.|+||.|+.. |+.++++.|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH
Confidence 34566666666 666666666666665 44444 56666666666666666666666666665433 556666666666
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165 (669)
Q Consensus 117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~ 165 (669)
..|+.+++++|++++.+.+ ..+..|.||||+|+..++.+++++|++.+
T Consensus 277 ~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 6666666666666655544 34445556666666666666666655443
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=8e-17 Score=177.66 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=111.3
Q ss_pred CChHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHH---cCCHHHHHHHHhcCCCCcccccCCCCcH
Q 005931 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAI---NGRVKILVAFLSSSPASFDRLTTYGETV 247 (669)
Q Consensus 176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~---~g~~e~v~~LL~~~~~~i~~~d~~g~t~ 247 (669)
..+.||.|+..|+.++++.|++.|++++.. .+..|.||||+|+. .|+.++++.|+..+ ++++.+|..|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcH
Confidence 347899999999999999999999988754 36789999999966 89999988888754 7899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q 005931 248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310 (669)
Q Consensus 248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n 310 (669)
||+|+.+|+.+++++|++. +++++.+|.+|+||||+|+..|+.+++++|+ +.|+|++...
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-~~ga~~~~~~ 270 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLE-QAQAGTFAFP 270 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHT--CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHH-HTCC------
T ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HhCCCCCCCc
Confidence 9999999999999999996 7788999999999999999999999999999 7788887743
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.68 E-value=2.1e-16 Score=131.95 Aligned_cols=88 Identities=33% Similarity=0.496 Sum_probs=62.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH
Q 005931 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL 288 (669)
Q Consensus 209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~ 288 (669)
+|+||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..++.+++++|++. +.+++.+|.+|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHH
Confidence 366777777777777776666654 356677777777777777777777777777775 55667777777777777777
Q ss_pred cCCHHHHHHHH
Q 005931 289 RKNYQFVEYII 299 (669)
Q Consensus 289 ~~~~~iv~~Ll 299 (669)
.++.+++++|+
T Consensus 78 ~~~~~~~~~Ll 88 (93)
T 1n0q_A 78 NGHLEVVKLLL 88 (93)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 77777777777
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.68 E-value=6.1e-17 Score=140.97 Aligned_cols=108 Identities=28% Similarity=0.304 Sum_probs=92.5
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHH
Q 005931 206 YNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHL 285 (669)
Q Consensus 206 ~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~ 285 (669)
.|.+|.||||.|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|+||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 477888899998888888888877765 467888888999999999999999999999986 66788899999999999
Q ss_pred HHHcCCHHHHHHHHHhcCcccccccCCCCCHH
Q 005931 286 AVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317 (669)
Q Consensus 286 A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L 317 (669)
|+..++.+++++|+ +.|+|++.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll-~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLD-AKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHH-TTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHH-HcCCCCCcCCccccccc
Confidence 99999999999999 77899999999998873
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.67 E-value=7.9e-17 Score=140.25 Aligned_cols=108 Identities=28% Similarity=0.338 Sum_probs=92.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL 114 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~ 114 (669)
.+|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHH
Confidence 4588999999999999999999999999888 7888999999999999999999999999999887654 8889999999
Q ss_pred HHHcCCHHHHHHHHcCCCccccccCCCCCcH
Q 005931 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTP 145 (669)
Q Consensus 115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~ 145 (669)
|+..++.+++++|++++.+.+ ..+..+.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVN-ARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHH-HHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCC-cCCcccccc
Confidence 999999999999999988876 344445544
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.61 E-value=1.8e-15 Score=130.56 Aligned_cols=95 Identities=28% Similarity=0.360 Sum_probs=82.8
Q ss_pred hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931 31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS 110 (669)
Q Consensus 31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t 110 (669)
......|.+|.|+||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+++... |..|.|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t 92 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKT 92 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccCCCc
Confidence 44566799999999999999999999999999887 7888999999999999999999999999999987654 889999
Q ss_pred HHHHHHHcCCHHHHHHH
Q 005931 111 AFSLACRQGHLDVVKLL 127 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~L 127 (669)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999986
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.52 E-value=3.1e-14 Score=122.76 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=45.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHH
Q 005931 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA 286 (669)
Q Consensus 207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A 286 (669)
+.+|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++. +.+++.+|..|+||||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHHH
Confidence 44445555555555555554444433 344455555555555555555555555555553 344555555555555555
Q ss_pred HHcCCHHHHHHH
Q 005931 287 VLRKNYQFVEYI 298 (669)
Q Consensus 287 ~~~~~~~iv~~L 298 (669)
+..++.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 555555555544
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=72.61 E-value=8.1 Score=39.32 Aligned_cols=90 Identities=9% Similarity=-0.006 Sum_probs=53.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHcCcchhhh-cccCCCCChHHHHHHHcCCHHHHHHHHHhC-Ccc-ccccCCCCCcHHHHHH
Q 005931 6 AQNLSEAIVRNDKQALINLVGCSNKRIL-LQRDASLNTALHLAARFGHVELVTEITKLC-PEL-VAAENEKLETPLHEAC 82 (669)
Q Consensus 6 ~~~L~~Ai~~gd~~~l~~ll~~~~~~~l-~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~-~~~-~~~~n~~g~TpLh~Aa 82 (669)
++-|...+..++.+..+.+++.-.+..+ -..|..|+..+.-....|+.+....+++.- +.+ .-..+..|...+..+.
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~l 117 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL 117 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHH
Confidence 3445566777777777666652112222 234888888888888888887777776642 121 1234556666666666
Q ss_pred HcCCHHHHHHHHh
Q 005931 83 CQGNHEVSAFLME 95 (669)
Q Consensus 83 ~~g~~eivk~Ll~ 95 (669)
.....+-...+++
T Consensus 118 e~~~~~~~~~i~~ 130 (351)
T 3gvo_A 118 ESISSDQQSEMVK 130 (351)
T ss_dssp HHSCHHHHHHHHG
T ss_pred HhCCHHHHHHHHH
Confidence 6666554444443
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=67.79 E-value=14 Score=37.41 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 005931 556 VMWVSISFMATAYIAATRIT 575 (669)
Q Consensus 556 ~~~~~~~~~~~a~~~~~~~~ 575 (669)
+..++++++..+|++|+|-+
T Consensus 282 LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 56778889999999999843
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=61.29 E-value=37 Score=34.56 Aligned_cols=88 Identities=7% Similarity=-0.041 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCHHHHHHHHcCcchhhhc-ccCCCCChHHHHHHHcCCHHHHHHHHHhCC-cc-ccccCCCCCcHHHHHHH
Q 005931 7 QNLSEAIVRNDKQALINLVGCSNKRILL-QRDASLNTALHLAARFGHVELVTEITKLCP-EL-VAAENEKLETPLHEACC 83 (669)
Q Consensus 7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~-~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~-~~-~~~~n~~g~TpLh~Aa~ 83 (669)
+-+.+++..++.+....+++.-.+..+. ..|..|+..+......+..+..+.+++.-. .. .-..+..|...+.-+..
T Consensus 44 R~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le 123 (369)
T 3k49_A 44 RFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALE 123 (369)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHH
Confidence 3456667777777766666622222222 338888888888888888777766666421 11 11234455555555555
Q ss_pred cCCHHHHHHHH
Q 005931 84 QGNHEVSAFLM 94 (669)
Q Consensus 84 ~g~~eivk~Ll 94 (669)
....+-...++
T Consensus 124 ~~~~~q~~~ii 134 (369)
T 3k49_A 124 YIDSNQRIELV 134 (369)
T ss_dssp HSCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 55544333333
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=59.14 E-value=54 Score=29.45 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=77.5
Q ss_pred ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931 4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83 (669)
Q Consensus 4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~ 83 (669)
..+.++-.|+..||++....+.+ . ++ ....-.+.=..|...|+.++++.......+. ...+.+...
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~-~----l~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~ 72 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAK-K----LN-DSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLV 72 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHH-H----HC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHH-H----hC-CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHH
Confidence 33455677888888888877765 1 00 0111223344566778888888777765542 123455555
Q ss_pred cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHH-HHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931 84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD-VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162 (669)
Q Consensus 84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e-iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll 162 (669)
.|+.+-++.|.+.- ....+-..+++.+...|+.+ .++.|.+.+.... +...|-.+|..+.++.++
T Consensus 73 tg~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e---------A~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 73 TGDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL---------AYAVAKANGDEAAASAFL 138 (177)
T ss_dssp HTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH---------HHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH---------HHHHHHHcCcHHHHHHHH
Confidence 77777666654421 01222335667776777754 6666665543332 566677778888888777
Q ss_pred hc
Q 005931 163 EV 164 (669)
Q Consensus 163 ~~ 164 (669)
+.
T Consensus 139 ~~ 140 (177)
T 3mkq_B 139 EQ 140 (177)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=57.39 E-value=15 Score=37.23 Aligned_cols=94 Identities=6% Similarity=-0.100 Sum_probs=57.6
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhC-Ccc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhh--CCccccccCCCCCc
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLC-PEL-VAAENEKLETPLHEACCQGNHEVSAFLMEA--NPTVATKLNHESQS 110 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~-~~~-~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~--~~~~~~~~~~~g~t 110 (669)
..|..|...|......++.+-.+.+.+.- +.. .-..|..|+..+.-....|+.+....+++. |.-..-..+..|..
T Consensus 32 a~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~r 111 (351)
T 3gvo_A 32 SQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCR 111 (351)
T ss_dssp HTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHH
T ss_pred hcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHH
Confidence 33777778888888888877666665531 111 224677888888888888887777766652 22222234556666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 005931 111 AFSLACRQGHLDVVKLLI 128 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~Ll 128 (669)
.+..+......+-...++
T Consensus 112 vvQk~le~~~~~~~~~i~ 129 (351)
T 3gvo_A 112 VIQKALESISSDQQSEMV 129 (351)
T ss_dssp HHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 666666666555444444
No 120
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.46 E-value=11 Score=28.97 Aligned_cols=40 Identities=20% Similarity=-0.048 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 005931 584 WVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKL 623 (669)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (669)
...+++.++++.+++.+.+++.++++..+-.++.++|-.+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555556666677777666555555444443
No 121
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=36.50 E-value=56 Score=33.15 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 005931 556 VMWVSISFMATAYIAATRIT 575 (669)
Q Consensus 556 ~~~~~~~~~~~a~~~~~~~~ 575 (669)
+..+++++|..+|++|+|-+
T Consensus 306 LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 57788999999999999843
No 122
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=32.85 E-value=61 Score=32.85 Aligned_cols=94 Identities=7% Similarity=-0.081 Sum_probs=55.3
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhC-Cc-cccccCCCCCcHHHHHHHcCCHHHHHHHHhh--CCccccccCCCCCc
Q 005931 35 QRDASLNTALHLAARFGHVELVTEITKLC-PE-LVAAENEKLETPLHEACCQGNHEVSAFLMEA--NPTVATKLNHESQS 110 (669)
Q Consensus 35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~-~~-~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~--~~~~~~~~~~~g~t 110 (669)
..|..|...+.-+...+..+-.+.+.+.- +. ..-..|..|+..+.-....+..+..+.+++. |.-..-..+..|..
T Consensus 37 ~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~r 116 (369)
T 3k49_A 37 CKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACR 116 (369)
T ss_dssp HTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHH
T ss_pred HcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHH
Confidence 33777888888888888877766666541 11 1224677888888888888887766666653 11111122445555
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 005931 111 AFSLACRQGHLDVVKLLI 128 (669)
Q Consensus 111 pL~~A~~~g~~eiv~~Ll 128 (669)
.+..+......+-...++
T Consensus 117 VlQk~le~~~~~q~~~ii 134 (369)
T 3k49_A 117 VIQKALEYIDSNQRIELV 134 (369)
T ss_dssp HHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 555555555444333333
No 123
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.01 E-value=2.8e+02 Score=24.74 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=26.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCc
Q 005931 41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPT 99 (669)
Q Consensus 41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~ 99 (669)
++=+.+|...|+++....+.+...+ ...-.+.=..|...|+.++++....+-.+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3446666677776666555442111 00111222344556666666666655444
Done!