BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005932
(669 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
G T LH A Q S V LL G DP ++ +NG TP++LA+ + F++ D
Sbjct: 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 454 LLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488
LL+ G D ++ E G+TP +LA EK+ +R +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
G T LH A Q S V LL G DP ++ +NG TP++LA+ + F++ D
Sbjct: 58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 454 LLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488
LL+ G D ++ E G+TP +LA EK+ +R +
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V LL QG DP KD +G+TP LA+E + + ++ D
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V LL QG DP KD +G+TP LA+E + + ++ D
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LH AA++ + V LL QG DP D +GRTP LA E
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
L EAA++ +V +LLE G D D +G+TP LA+E + + ++ D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V LL +G DP KD +GRTP A+E + + ++ D
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V LL +G DP KD +GRTP A+E + + ++ D
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
L EAA++ +V +LLE G DP D +GRTP A+E + + ++ D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LH AA++ + V LL +G DP D +GRTP LA E
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLARE 145
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
T LH AA++ + V LLE G D KD+NGRTP LA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
T LH AA++ + V LLE G D KD+NGRTP LA+
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
T LH AA++ + V LLE G D KD+NGRTP LA+
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
T LH AA++ + V LLE G D KD+NGRTP LA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
T LH AA++ + V LLE G D KD+NGRTP LA+
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ A++V +LL +G D + ++G TP LA++ + +A D
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFR 485
T+LH AA+ S + LLE D I+D GRTP A + + F+
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQ 72
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWD 496
T+LH AA+ S + LLE D I+D GRTP A + + F+ + + D
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 497 --WHAAKVPSALTKEM 510
H P L +
Sbjct: 119 ARMHDGTTPLILAARL 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWD 496
T+LH AA+ S + LLE D I+D GRTP A + + F+ + + D
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 497 --WHAAKVPSALTKEM 510
H P L +
Sbjct: 120 ARMHDGTTPLILAARL 135
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFR 485
T+LH AA+ S + LLE D I+D GRTP A + + F+
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V L+ +G D KD +GRTP A+E + + ++ D
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA++ + V L+ +G D KD +GRTP A+E + + ++ D
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LH AA++ + V L+ +G D D +GRTP LA E
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
L EAA++ +V +L+E G D D +GRTP A+E + + ++ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 436 TTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKW 495
T+LH AA S + LLE D I+D GRTP A + + F+ + +
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 496 D--WHAAKVPSALTKEM 510
D H P L +
Sbjct: 118 DARMHDGTTPLILAARL 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 436 TTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
+T LH AA + V LL+ G D KD+NG TP LA+ +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR 123
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 221 EPRDGTHLRVVLLASGGHFAGSVFDGNLVVARKTFH 256
EPR+ + LR+VL+ G AG GN ++ RK FH
Sbjct: 24 EPRN-SQLRIVLVGKTG--AGKSATGNSILGRKVFH 56
>pdb|3LDY|A Chain A, An Extraordinary Mechanism Of Dna Perturbation Exhibited
By The Rare- Cutting Hnh Restriction Endonuclease Paci
pdb|3M7K|A Chain A, Crystal Structure Of Paci-Dna Enzyme Product Complex
Length = 142
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 610 QGSSTSVAPSTLQPKTGLATDINCSCCGASLAGKVPFHRYNYKYCSTSCMHVHR 663
+G + + +T GL+ +C CG S AG HR N + C+ V R
Sbjct: 40 EGHANTFTKATFLAWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDR 93
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LHEAA + LL+ G DP K+ +G TP L +
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LHEAA + LL+ G DP K+ +G TP L +
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LHEAA + LL+ G DP K+ +G TP L +
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA+ + V L+ +G D KD +GRTP A+++ + + ++ D
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
T LH AA+ + V L+ +G D KD +GRTP A+++ + + ++ D
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493
L EAA++ +V +L+E G D D +GRTP A+++ + + ++ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
T LH AA+ + V L+ +G D D +GRTP LA E
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLARE 145
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
L EAA++ +V L+ G D KD+NG TP LA+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 65
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 439 LHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476
L EAA++ +V L+ G D KD+NG TP LA+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 47
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 437 TSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478
T LH AA+ + V LL+ G D KD++G TP LA+ +
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 437 TSLHEAAQSSIAQKVLELL-EQGLDPCIKDENGRTPYMLASEK 478
T+LH AAQ S V L+ E+G + +DE+G+TP LA+++
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQE 323
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477
+TGIT LH AA + + V LL+ G D D +G TP LA++
Sbjct: 78 LTGIT-PLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 183 MLNESESVSYEDDKSFSVNDEGCLSVSEVIERLKSLTCEPRDGTHLRVVLLASGGHFAG 241
M+ + + D KSF N +G +S +++ + CE + T+ ++ ++ASGG F+G
Sbjct: 285 MIISNTTTQINDIKSFE-NKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG 342
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 183 MLNESESVSYEDDKSFSVNDEGCLSVSEVIERLKSLTCEPRDGTHLRVVLLASGGHFAG 241
M+ + + D KSF N +G +S +++ + CE + T+ ++ ++ASGG F+G
Sbjct: 300 MIISNTTTQINDIKSFE-NKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG 357
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492
T T+ +H+AA++ + L+E G D + D G P LA + E F+A+
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-EGHTAVVSFLAAES 130
Query: 493 D 493
D
Sbjct: 131 D 131
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 183 MLNESESVSYEDDKSFSVNDEGCLSVSEVIERLKSLTCEPRDGTHLRVVLLASGGHFAG 241
M+ + + D KSF N +G +S +++ + CE + T+ ++ ++ASGG F+G
Sbjct: 328 MIISNTTTQINDIKSFE-NKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG 385
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492
T T+ +H+AA++ + L+E G D + D G P LA + E F+A+
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-EGHTAVVSFLAAES 124
Query: 493 D 493
D
Sbjct: 125 D 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,244,086
Number of Sequences: 62578
Number of extensions: 577502
Number of successful extensions: 1580
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 84
length of query: 669
length of database: 14,973,337
effective HSP length: 105
effective length of query: 564
effective length of database: 8,402,647
effective search space: 4739092908
effective search space used: 4739092908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)