Query 005932
Match_columns 669
No_of_seqs 380 out of 1554
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2505 Ankyrin repeat protein 100.0 8E-122 2E-126 982.7 35.8 553 10-603 4-589 (591)
2 PTZ00448 hypothetical protein; 99.6 6.8E-17 1.5E-21 171.9 4.7 54 75-128 311-364 (373)
3 KOG2785 C2H2-type Zn-finger pr 99.5 2.2E-15 4.8E-20 160.3 3.8 50 77-126 2-51 (390)
4 PF13857 Ank_5: Ankyrin repeat 99.2 6.9E-12 1.5E-16 100.8 2.9 47 429-475 10-56 (56)
5 PF13637 Ank_4: Ankyrin repeat 98.9 6.6E-10 1.4E-14 88.0 3.9 53 435-487 1-53 (54)
6 KOG4412 26S proteasome regulat 98.8 8.4E-09 1.8E-13 101.7 5.3 60 429-488 66-126 (226)
7 PF00023 Ank: Ankyrin repeat H 98.8 9.9E-09 2.2E-13 73.8 4.4 33 434-466 1-33 (33)
8 PF12796 Ank_2: Ankyrin repeat 98.7 1.3E-08 2.9E-13 87.2 5.4 58 435-492 26-83 (89)
9 PF13606 Ank_3: Ankyrin repeat 98.7 1.1E-08 2.5E-13 72.8 4.0 30 434-463 1-30 (30)
10 PHA02798 ankyrin-like protein; 98.5 7.4E-08 1.6E-12 107.9 4.9 67 429-495 252-318 (489)
11 PHA03095 ankyrin-like protein; 98.5 9E-08 1.9E-12 105.3 5.2 66 429-494 251-316 (471)
12 PHA02989 ankyrin repeat protei 98.5 1.3E-07 2.9E-12 105.9 5.1 65 429-493 250-314 (494)
13 KOG4412 26S proteasome regulat 98.4 1.4E-07 3E-12 93.3 3.9 63 429-491 100-162 (226)
14 PHA02736 Viral ankyrin protein 98.4 2.1E-07 4.6E-12 88.0 5.1 61 431-491 87-149 (154)
15 KOG0512 Fetal globin-inducing 98.4 3.6E-07 7.7E-12 89.9 5.3 65 429-493 91-155 (228)
16 PHA02741 hypothetical protein; 98.3 4.9E-07 1.1E-11 87.5 4.9 54 434-487 97-151 (169)
17 KOG0502 Integral membrane anky 98.3 4.1E-07 8.9E-12 92.2 4.0 70 430-499 155-226 (296)
18 PHA02743 Viral ankyrin protein 98.3 6.5E-07 1.4E-11 86.7 5.4 60 431-490 89-150 (166)
19 PHA02795 ankyrin-like protein; 98.3 6.2E-07 1.3E-11 99.8 5.8 63 430-492 216-286 (437)
20 PHA02946 ankyin-like protein; 98.3 6.3E-07 1.4E-11 100.0 5.8 65 429-493 66-132 (446)
21 PHA03100 ankyrin repeat protei 98.3 6E-07 1.3E-11 99.2 5.3 64 430-493 245-308 (480)
22 PHA02730 ankyrin-like protein; 98.3 6.5E-07 1.4E-11 104.0 5.6 61 430-490 36-101 (672)
23 PHA02791 ankyrin-like protein; 98.3 7E-07 1.5E-11 94.4 5.1 59 434-492 159-218 (284)
24 KOG4214 Myotrophin and similar 98.3 6.3E-07 1.4E-11 80.3 3.7 72 433-508 32-103 (117)
25 PHA02791 ankyrin-like protein; 98.3 8.1E-07 1.8E-11 93.9 5.2 56 435-490 61-116 (284)
26 KOG0509 Ankyrin repeat and DHH 98.3 5.4E-07 1.2E-11 102.1 3.9 42 435-476 112-153 (600)
27 PHA02741 hypothetical protein; 98.2 9.9E-07 2.1E-11 85.3 4.8 61 429-489 54-119 (169)
28 PHA02743 Viral ankyrin protein 98.2 9.3E-07 2E-11 85.6 4.0 59 430-488 52-114 (166)
29 PTZ00322 6-phosphofructo-2-kin 98.2 1.3E-06 2.8E-11 102.2 5.8 62 429-490 109-170 (664)
30 PHA02875 ankyrin repeat protei 98.2 1.4E-06 3.1E-11 94.8 5.3 63 430-492 130-192 (413)
31 PHA02875 ankyrin repeat protei 98.2 1.8E-06 3.8E-11 94.1 5.4 66 429-494 162-228 (413)
32 PHA02884 ankyrin repeat protei 98.2 1.9E-06 4.1E-11 91.9 5.3 43 434-476 103-145 (300)
33 PHA02878 ankyrin repeat protei 98.2 1.7E-06 3.8E-11 96.4 5.3 63 430-492 196-259 (477)
34 PHA02716 CPXV016; CPX019; EVM0 98.2 1.2E-06 2.6E-11 103.4 4.0 65 430-494 492-566 (764)
35 KOG0515 p53-interacting protei 98.1 2.3E-06 5.1E-11 95.1 5.4 59 431-489 579-637 (752)
36 KOG0514 Ankyrin repeat protein 98.1 1.8E-06 3.9E-11 92.8 4.1 58 433-490 338-395 (452)
37 PHA02874 ankyrin repeat protei 98.1 3E-06 6.5E-11 93.3 5.6 63 430-492 152-214 (434)
38 PLN03192 Voltage-dependent pot 98.1 2.3E-06 5.1E-11 102.2 5.0 60 429-488 552-611 (823)
39 PHA02859 ankyrin repeat protei 98.1 2.3E-06 5E-11 86.0 4.0 49 431-479 154-203 (209)
40 PHA02874 ankyrin repeat protei 98.1 3.6E-06 7.9E-11 92.7 5.4 57 430-487 185-241 (434)
41 PHA02878 ankyrin repeat protei 98.1 3.7E-06 8.1E-11 93.8 5.4 61 429-491 228-290 (477)
42 KOG0512 Fetal globin-inducing 98.0 3.4E-06 7.4E-11 83.1 3.6 60 429-488 124-184 (228)
43 PHA02876 ankyrin repeat protei 98.0 5.6E-06 1.2E-10 96.5 5.5 60 430-489 173-232 (682)
44 PHA02736 Viral ankyrin protein 98.0 1.8E-06 3.9E-11 81.7 1.1 60 430-489 50-113 (154)
45 PHA02798 ankyrin-like protein; 98.0 5.6E-06 1.2E-10 92.9 5.1 63 430-492 104-172 (489)
46 KOG4177 Ankyrin [Cell wall/mem 98.0 5.1E-06 1.1E-10 100.7 4.8 59 431-489 536-594 (1143)
47 COG0666 Arp FOG: Ankyrin repea 98.0 1.2E-05 2.6E-10 76.7 5.9 61 429-489 141-201 (235)
48 KOG0195 Integrin-linked kinase 97.9 7.9E-06 1.7E-10 85.7 4.7 56 432-487 31-86 (448)
49 PHA02884 ankyrin repeat protei 97.9 8.5E-06 1.8E-10 87.0 4.6 60 432-491 67-127 (300)
50 PHA03095 ankyrin-like protein; 97.9 1E-05 2.3E-10 89.1 5.4 62 431-492 79-143 (471)
51 KOG0510 Ankyrin repeat protein 97.9 8.5E-06 1.8E-10 94.6 4.6 61 429-489 267-327 (929)
52 PF12796 Ank_2: Ankyrin repeat 97.9 1E-05 2.2E-10 69.2 4.0 37 429-465 53-89 (89)
53 KOG0508 Ankyrin repeat protein 97.9 4.9E-06 1.1E-10 91.9 2.1 61 429-489 144-204 (615)
54 KOG0195 Integrin-linked kinase 97.9 6.9E-06 1.5E-10 86.1 2.8 57 431-487 63-119 (448)
55 PHA02859 ankyrin repeat protei 97.9 1.7E-05 3.6E-10 79.7 5.4 60 430-489 118-180 (209)
56 PHA03100 ankyrin repeat protei 97.9 1.4E-05 3E-10 88.5 5.0 63 430-492 136-200 (480)
57 KOG0509 Ankyrin repeat and DHH 97.9 1.2E-05 2.6E-10 91.5 4.4 60 429-488 139-198 (600)
58 COG0666 Arp FOG: Ankyrin repea 97.8 2.2E-05 4.7E-10 74.9 5.3 62 429-490 100-169 (235)
59 KOG0818 GTPase-activating prot 97.8 1.3E-05 2.8E-10 88.8 3.6 51 433-483 165-215 (669)
60 PHA02792 ankyrin-like protein; 97.8 2.1E-05 4.6E-10 91.0 5.0 48 430-477 405-452 (631)
61 KOG0508 Ankyrin repeat protein 97.8 3.1E-05 6.8E-10 85.7 5.9 59 434-492 116-174 (615)
62 PHA02917 ankyrin-like protein; 97.8 2.8E-05 6E-10 91.2 5.5 64 430-493 447-511 (661)
63 PHA02716 CPXV016; CPX019; EVM0 97.7 1.9E-05 4.1E-10 93.5 4.1 48 429-476 206-255 (764)
64 PHA02989 ankyrin repeat protei 97.7 3.2E-05 7E-10 86.9 5.0 60 431-490 141-207 (494)
65 KOG4177 Ankyrin [Cell wall/mem 97.7 3.1E-05 6.6E-10 94.2 4.9 82 431-512 569-656 (1143)
66 KOG0505 Myosin phosphatase, re 97.7 0.00011 2.4E-09 82.3 8.8 79 432-510 195-274 (527)
67 PLN03192 Voltage-dependent pot 97.7 4.1E-05 8.9E-10 91.7 5.4 58 435-492 622-679 (823)
68 cd00204 ANK ankyrin repeats; 97.6 7E-05 1.5E-09 65.1 5.2 59 432-490 4-62 (126)
69 PHA02730 ankyrin-like protein; 97.6 5E-05 1.1E-09 88.6 5.4 64 430-493 457-523 (672)
70 KOG0510 Ankyrin repeat protein 97.6 3.6E-05 7.8E-10 89.6 3.5 63 430-492 336-401 (929)
71 PHA02917 ankyrin-like protein; 97.6 3.9E-05 8.5E-10 89.9 3.7 51 430-480 27-80 (661)
72 PHA02946 ankyin-like protein; 97.6 5.4E-05 1.2E-09 84.7 4.3 60 432-492 320-379 (446)
73 KOG0502 Integral membrane anky 97.6 1.9E-05 4.1E-10 80.4 0.5 51 431-481 222-272 (296)
74 KOG0505 Myosin phosphatase, re 97.6 0.00016 3.6E-09 81.1 7.7 63 430-492 68-130 (527)
75 PHA02876 ankyrin repeat protei 97.6 7.6E-05 1.6E-09 87.1 5.3 59 430-488 370-429 (682)
76 KOG1710 MYND Zn-finger and ank 97.6 7.1E-05 1.5E-09 78.7 4.4 56 430-485 74-129 (396)
77 KOG0522 Ankyrin repeat protein 97.5 4.5E-05 9.7E-10 85.4 2.7 50 430-479 50-99 (560)
78 cd00204 ANK ankyrin repeats; 97.5 0.00016 3.5E-09 62.9 5.1 61 430-490 35-95 (126)
79 TIGR00870 trp transient-recept 97.5 9.2E-05 2E-09 87.4 4.6 58 432-489 125-196 (743)
80 KOG0514 Ankyrin repeat protein 97.4 9.6E-05 2.1E-09 79.8 3.8 58 430-487 368-426 (452)
81 PHA02792 ankyrin-like protein; 97.4 0.00014 3.1E-09 84.3 4.6 59 431-489 171-238 (631)
82 KOG0507 CASK-interacting adapt 97.4 0.0001 2.2E-09 85.4 3.2 61 430-490 110-170 (854)
83 PHA02795 ankyrin-like protein; 97.4 0.00015 3.1E-09 81.2 4.2 59 433-491 186-244 (437)
84 KOG0506 Glutaminase (contains 97.3 9.1E-05 2E-09 82.0 1.9 59 429-487 533-592 (622)
85 KOG2505 Ankyrin repeat protein 97.3 0.00059 1.3E-08 76.2 7.4 61 448-508 404-471 (591)
86 smart00248 ANK ankyrin repeats 97.2 0.00055 1.2E-08 44.0 4.1 29 434-462 1-29 (30)
87 KOG4214 Myotrophin and similar 97.2 0.00035 7.7E-09 63.0 3.5 56 429-484 61-116 (117)
88 KOG1710 MYND Zn-finger and ank 96.9 0.00041 8.9E-09 73.2 2.3 59 430-488 40-99 (396)
89 KOG0705 GTPase-activating prot 96.9 0.00088 1.9E-08 75.8 4.5 60 431-490 657-716 (749)
90 TIGR00870 trp transient-recept 96.8 0.0004 8.6E-09 82.1 1.3 48 432-479 172-219 (743)
91 PF13637 Ank_4: Ankyrin repeat 96.8 0.001 2.3E-08 52.5 3.2 26 430-455 29-54 (54)
92 KOG0507 CASK-interacting adapt 96.7 0.00092 2E-08 77.8 3.2 66 431-496 78-143 (854)
93 PTZ00322 6-phosphofructo-2-kin 96.7 0.0014 3.1E-08 77.0 4.6 56 436-491 83-138 (664)
94 KOG2384 Major histocompatibili 96.7 0.0013 2.9E-08 65.9 3.6 59 430-488 7-66 (223)
95 smart00451 ZnF_U1 U1-like zinc 96.6 0.0014 3E-08 47.5 2.3 33 77-109 2-34 (35)
96 KOG3676 Ca2+-permeable cation 96.3 0.0034 7.4E-08 73.7 4.4 70 428-497 266-338 (782)
97 KOG3676 Ca2+-permeable cation 96.3 0.0033 7.3E-08 73.8 3.9 57 433-489 238-294 (782)
98 PF13857 Ank_5: Ankyrin repeat 95.7 0.0037 8.1E-08 50.1 0.7 37 454-490 1-38 (56)
99 KOG0515 p53-interacting protei 95.7 0.007 1.5E-07 68.3 2.9 47 430-476 611-658 (752)
100 PF12171 zf-C2H2_jaz: Zinc-fin 95.2 0.013 2.9E-07 40.5 2.0 26 79-104 2-27 (27)
101 PF12874 zf-met: Zinc-finger o 94.8 0.015 3.3E-07 39.0 1.4 25 79-103 1-25 (25)
102 KOG0783 Uncharacterized conser 94.6 0.013 2.7E-07 69.2 1.0 78 433-512 84-170 (1267)
103 KOG0783 Uncharacterized conser 94.6 0.018 3.9E-07 67.9 2.2 60 431-490 48-108 (1267)
104 KOG0520 Uncharacterized conser 93.7 0.038 8.3E-07 66.7 2.6 48 431-478 637-690 (975)
105 KOG4369 RTK signaling protein 92.5 0.068 1.5E-06 65.0 2.2 55 431-485 1023-1077(2131)
106 KOG0521 Putative GTPase activa 92.1 0.084 1.8E-06 63.5 2.4 49 433-481 654-702 (785)
107 KOG0521 Putative GTPase activa 91.5 0.076 1.6E-06 63.8 1.1 48 431-478 685-732 (785)
108 PF06467 zf-FCS: MYM-type Zinc 91.1 0.13 2.9E-06 38.9 1.8 32 630-662 6-43 (43)
109 KOG4369 RTK signaling protein 91.0 0.13 2.8E-06 62.8 2.3 55 434-488 756-810 (2131)
110 KOG0782 Predicted diacylglycer 90.5 0.12 2.7E-06 59.0 1.5 59 431-489 895-955 (1004)
111 PF08394 Arc_trans_TRASH: Arch 89.2 0.2 4.4E-06 37.8 1.3 33 633-666 1-37 (37)
112 KOG0506 Glutaminase (contains 88.0 0.57 1.2E-05 53.0 4.3 69 431-499 502-574 (622)
113 KOG0782 Predicted diacylglycer 87.8 0.27 5.9E-06 56.3 1.8 46 431-476 930-975 (1004)
114 KOG0818 GTPase-activating prot 86.6 0.9 1.9E-05 51.7 4.9 57 429-485 121-184 (669)
115 KOG0163 Myosin class VI heavy 85.7 2.6 5.6E-05 50.2 8.1 75 277-364 638-721 (1259)
116 KOG1144 Translation initiation 84.7 7.3 0.00016 46.8 11.1 14 589-603 287-300 (1064)
117 PF13912 zf-C2H2_6: C2H2-type 84.0 0.63 1.4E-05 31.7 1.5 23 79-101 2-24 (27)
118 PF13894 zf-C2H2_4: C2H2-type 83.1 0.53 1.2E-05 30.3 0.8 22 79-100 1-22 (24)
119 smart00746 TRASH metallochaper 81.9 1.1 2.4E-05 30.6 2.1 32 633-664 1-37 (39)
120 PF00096 zf-C2H2: Zinc finger, 81.3 0.68 1.5E-05 30.3 0.7 22 79-100 1-22 (23)
121 KOG0511 Ankyrin repeat protein 77.9 3.1 6.8E-05 46.2 4.8 30 431-460 65-94 (516)
122 PF13606 Ank_3: Ankyrin repeat 77.1 1.1 2.3E-05 31.8 0.7 26 467-492 1-26 (30)
123 PTZ00266 NIMA-related protein 76.9 16 0.00034 45.8 11.0 11 347-357 283-293 (1021)
124 PTZ00266 NIMA-related protein 76.9 24 0.00051 44.3 12.5 10 632-641 562-571 (1021)
125 KOG0511 Ankyrin repeat protein 75.7 2.5 5.5E-05 46.9 3.4 54 436-489 37-90 (516)
126 KOG3362 Predicted BBOX Zn-fing 75.4 1 2.2E-05 43.6 0.3 33 630-664 118-150 (156)
127 KOG4364 Chromatin assembly fac 75.0 13 0.00029 44.0 9.0 11 593-603 360-370 (811)
128 PF00023 Ank: Ankyrin repeat H 73.7 1.4 3E-05 31.4 0.6 25 467-491 1-25 (33)
129 PF07946 DUF1682: Protein of u 72.2 19 0.0004 39.2 9.1 17 576-593 302-318 (321)
130 PF12756 zf-C2H2_2: C2H2 type 68.8 2.4 5.3E-05 36.5 1.2 30 76-105 48-77 (100)
131 KOG4364 Chromatin assembly fac 67.6 19 0.00042 42.6 8.2 17 587-603 361-377 (811)
132 PF04640 PLATZ: PLATZ transcri 67.2 3.2 7E-05 35.9 1.6 23 629-658 48-70 (72)
133 PRK00807 50S ribosomal protein 66.5 2.9 6.3E-05 33.8 1.1 33 632-664 3-40 (52)
134 PF04570 DUF581: Protein of un 66.2 4.4 9.6E-05 33.7 2.1 32 631-662 17-50 (58)
135 KOG3408 U1-like Zn-finger-cont 65.7 6 0.00013 37.5 3.1 51 74-126 53-103 (129)
136 COG2075 RPL24A Ribosomal prote 64.5 2.9 6.4E-05 35.5 0.8 32 630-661 3-39 (66)
137 PRK01343 zinc-binding protein; 63.3 4.9 0.00011 33.3 1.8 25 630-660 9-33 (57)
138 smart00355 ZnF_C2H2 zinc finge 58.0 6.1 0.00013 25.4 1.3 21 79-99 1-21 (26)
139 KOG1144 Translation initiation 57.8 62 0.0013 39.5 10.0 13 582-594 288-300 (1064)
140 KOG0520 Uncharacterized conser 57.6 4.2 9.1E-05 49.9 0.7 32 457-488 630-661 (975)
141 KOG0522 Ankyrin repeat protein 57.3 7.5 0.00016 44.9 2.6 56 437-492 22-79 (560)
142 KOG0705 GTPase-activating prot 57.2 9.6 0.00021 44.5 3.4 33 430-462 689-721 (749)
143 KOG2507 Ubiquitin regulatory p 57.0 15 0.00033 41.5 4.8 26 582-607 249-275 (506)
144 KOG3609 Receptor-activated Ca2 56.1 9.7 0.00021 46.1 3.4 35 432-466 128-162 (822)
145 PHA00616 hypothetical protein 56.0 4.3 9.2E-05 32.0 0.3 22 79-100 2-23 (44)
146 PF09889 DUF2116: Uncharacteri 55.7 9.3 0.0002 31.9 2.2 28 631-665 4-31 (59)
147 PRK00247 putative inner membra 53.5 95 0.0021 35.5 10.5 15 291-305 85-99 (429)
148 PRK00247 putative inner membra 50.2 96 0.0021 35.5 9.8 10 591-600 367-376 (429)
149 PF07946 DUF1682: Protein of u 49.1 31 0.00067 37.6 5.6 8 449-456 238-245 (321)
150 PHA02768 hypothetical protein; 48.1 8.2 0.00018 31.8 0.8 25 78-102 5-29 (55)
151 KOG2357 Uncharacterized conser 47.8 77 0.0017 36.0 8.3 23 581-603 414-436 (440)
152 KOG0163 Myosin class VI heavy 47.1 91 0.002 38.0 9.1 32 287-318 588-620 (1259)
153 PLN03086 PRLI-interacting fact 46.4 1E+02 0.0022 36.5 9.5 7 597-603 62-68 (567)
154 PF02029 Caldesmon: Caldesmon; 45.6 60 0.0013 37.7 7.4 24 579-603 309-334 (492)
155 PTZ00033 60S ribosomal protein 45.5 13 0.00027 35.5 1.7 34 631-664 4-46 (125)
156 PTZ00121 MAEBL; Provisional 45.3 1.3E+02 0.0028 39.3 10.4 9 479-487 1092-1100(2084)
157 COG1644 RPB10 DNA-directed RNA 43.8 8.4 0.00018 32.4 0.2 14 630-643 4-17 (63)
158 PHA03073 late transcription fa 43.6 12 0.00026 36.3 1.3 29 630-659 49-83 (150)
159 PF12156 ATPase-cat_bd: Putati 43.0 31 0.00067 30.7 3.7 39 631-669 1-43 (88)
160 PRK00418 DNA gyrase inhibitor; 41.6 19 0.00041 30.4 2.0 27 630-660 6-34 (62)
161 PRK04016 DNA-directed RNA poly 41.4 8.5 0.00018 32.5 -0.1 12 631-642 5-16 (62)
162 PF01194 RNA_pol_N: RNA polyme 41.3 10 0.00022 31.8 0.3 13 631-643 5-17 (60)
163 PLN00032 DNA-directed RNA poly 41.2 8.7 0.00019 33.2 -0.1 13 631-643 5-17 (71)
164 PF03884 DUF329: Domain of unk 40.4 13 0.00029 30.8 0.9 28 631-660 3-30 (57)
165 PF12756 zf-C2H2_2: C2H2 type 40.1 9.4 0.0002 32.8 0.0 27 81-108 2-28 (100)
166 KOG3497 DNA-directed RNA polym 39.3 11 0.00024 31.7 0.2 14 630-643 4-17 (69)
167 PF10513 EPL1: Enhancer of pol 39.2 24 0.00053 34.1 2.7 26 102-127 130-155 (160)
168 PLN02748 tRNA dimethylallyltra 39.0 21 0.00046 41.1 2.5 35 76-110 416-451 (468)
169 PF04945 YHS: YHS domain; Int 38.7 15 0.00032 28.6 0.9 30 633-662 3-36 (47)
170 PTZ00121 MAEBL; Provisional 38.5 1.7E+02 0.0038 38.2 10.1 8 237-244 727-734 (2084)
171 COG4068 Uncharacterized protei 38.3 20 0.00042 30.1 1.5 27 626-659 4-30 (64)
172 KOG3612 PHD Zn-finger protein 37.3 1.2E+02 0.0025 35.7 7.9 29 632-664 529-558 (588)
173 KOG3054 Uncharacterized conser 36.4 1.4E+02 0.003 31.9 7.6 14 588-601 163-177 (299)
174 PF03464 eRF1_2: eRF1 domain 2 36.3 1.2E+02 0.0026 28.5 6.8 84 229-327 2-90 (133)
175 KOG2072 Translation initiation 36.2 1.2E+02 0.0027 37.2 8.1 12 115-126 310-321 (988)
176 COG5112 UFD2 U1-like Zn-finger 36.0 32 0.0007 32.0 2.7 51 75-127 52-102 (126)
177 KOG4661 Hsp27-ERE-TATA-binding 35.9 1.6E+02 0.0035 34.8 8.7 31 336-367 441-471 (940)
178 cd00472 Ribosomal_L24e_L24 Rib 35.6 23 0.00049 29.1 1.5 34 631-664 4-42 (54)
179 PLN03086 PRLI-interacting fact 35.0 2.4E+02 0.0052 33.5 10.2 21 588-608 47-67 (567)
180 PF13248 zf-ribbon_3: zinc-rib 32.6 25 0.00055 24.3 1.2 11 632-642 4-14 (26)
181 PF13220 DUF4028: Protein of u 31.5 34 0.00073 28.2 1.9 18 347-364 38-55 (65)
182 PF06220 zf-U1: U1 zinc finger 30.9 47 0.001 25.2 2.5 32 78-109 3-36 (38)
183 PRK04011 peptide chain release 29.0 1.9E+02 0.004 32.8 7.9 93 228-329 141-235 (411)
184 PRK13885 conjugal transfer pro 28.1 63 0.0014 35.2 3.8 40 230-269 243-291 (299)
185 PF06128 Shigella_OspC: Shigel 26.6 57 0.0012 34.5 3.0 29 431-459 250-278 (284)
186 KOG0717 Molecular chaperone (D 26.1 30 0.00065 39.6 1.0 33 79-112 293-325 (508)
187 PF02069 Metallothio_Pro: Prok 25.5 33 0.00073 28.0 0.9 32 632-663 9-40 (52)
188 PF01753 zf-MYND: MYND finger; 24.8 42 0.00091 24.7 1.3 22 631-664 10-31 (37)
189 KOG2002 TPR-containing nuclear 24.3 3.4E+02 0.0074 34.2 9.2 18 279-297 492-509 (1018)
190 PF13333 rve_2: Integrase core 23.7 28 0.00061 27.6 0.2 35 86-124 15-49 (52)
191 COG4049 Uncharacterized protei 22.9 30 0.00066 28.8 0.2 29 78-106 17-46 (65)
192 KOG3609 Receptor-activated Ca2 22.1 47 0.001 40.6 1.6 52 438-489 91-152 (822)
193 KOG2462 C2H2-type Zn-finger pr 21.6 41 0.0009 36.1 0.9 26 77-102 214-239 (279)
194 KOG2412 Nuclear-export-signal 21.5 2.6E+02 0.0055 33.1 7.1 8 647-654 376-383 (591)
195 KOG4727 U1-like Zn-finger prot 20.9 59 0.0013 32.8 1.7 36 76-111 73-108 (193)
196 KOG2689 Predicted ubiquitin re 20.9 1.1E+03 0.024 25.7 14.9 34 438-472 20-53 (290)
No 1
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=8.3e-122 Score=982.68 Aligned_cols=553 Identities=37% Similarity=0.511 Sum_probs=428.4
Q ss_pred ccCCCcccccCCCceecCChhHHhhccccCCCcCCCCCCCCCCccccccccccccccccccccccccccccccccccccC
Q 005932 10 TTATTVPQEKRHRSVFDLPSNFFDSCRLLSPLATSMSDNDSRPAAETLKVIHDYEEEDNRSINSVALTRWTCNTCKTEFE 89 (669)
Q Consensus 10 ~~~~~~~~~k~~lyvfdLp~~~l~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~ 89 (669)
+|.-+....+++|||||||.+||++|.|++++.+...... +.|.... ....+.......+++.++|++|++.|.
T Consensus 4 a~~mg~~~k~~~l~if~l~~~i~~~l~L~s~s~te~~~~~----~~Tsd~~--~~~~e~~~r~~v~sd~~~CstCq~~F~ 77 (591)
T KOG2505|consen 4 APDMGFTLKSNELLIFSLPADIFESLELESASETEEELIV----PETSDSM--SLEEEGDMRDSVISDSDQCSTCQIPFG 77 (591)
T ss_pred cccccCccccCccceecCchHHHhhcccCCCCchhhhhcC----CcCCCcc--chhhccchhhhhhcccccccccCCccc
Confidence 4455667889999999999999999999988765532111 1111100 001111112334678999999999999
Q ss_pred CHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHHHhhcccCCCCCCCCCCCccccccccCC-------CCCCCC-----
Q 005932 90 SLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEELTSDSLKDYDVSSISGSEDEADKLSCR-------HDPRGE----- 157 (669)
Q Consensus 90 ~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~~~~~~~~~~d~sSiSGSese~d~~~~~-------~~~~~~----- 157 (669)
++++||+||||||||||+||+|+|+|+||+++|+.++++ |++||||||+|.++.+.+ .+...+
T Consensus 78 s~~eqr~HyksD~HR~N~Krkl~~~~ils~edFe~i~s~-----d~ssiSgsEde~~s~tsSdheq~ek~~dr~~~~~~~ 152 (591)
T KOG2505|consen 78 SRQEQREHYKSDWHRFNTKRKLRGKPILSEEDFEGIISS-----DLSSISGSEDEAESLTSSDHEQTEKGLDRDKLDEEF 152 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhhhc-----ccccccccccccccCCcchhHHHHHhhhhhhhhHHH
Confidence 999999999999999999999999999999999999863 789999999864322211 000000
Q ss_pred -C-CCccc-------ccceeeccCCceeEEEeecccCccCccccccccccccccccccchHHHHHHhhhcccCCCCCCce
Q 005932 158 -S-VPSVR-------TKLFIRLQSGERVSFWKCLMLNESESVSYEDDKSFSVNDEGCLSVSEVIERLKSLTCEPRDGTHL 228 (669)
Q Consensus 158 -~-~~~~~-------~~~~~~~~~g~~~si~r~~l~~~~~~~~~~~~~a~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 228 (669)
+ ..... +...|.+..|.+++||+|+|+...+. +..++-.|+++|. .++..
T Consensus 153 ds~~~~~~qk~l~~~~~~s~~~e~~~~l~vyr~~~~~~n~~------------------~~~~~~~~~N~q~---~~p~~ 211 (591)
T KOG2505|consen 153 DSLDEPANQKPLIMDHRVSFSIENGSVLSVYRCILHVGNER------------------TESLVLLLRNLQS---RGPFD 211 (591)
T ss_pred hhhcccCcccchhhHHHHHhhhcCCceEEEeeecccccCCC------------------CHHHHHHHHhhcc---CCchh
Confidence 0 00001 12245567899999999999874221 2345556777774 45677
Q ss_pred EEEEEecCCceeEEEecCCeeEEeeccccceeecccCCcccccccCCCcccccccchhhccHHHHHHHHHHHHHhhHHhh
Q 005932 229 RVVLLASGGHFAGSVFDGNLVVARKTFHRYVVRAKAGKKQSSKDASGKAANSAGAALRRYNELALKKDLQELLASWKPYF 308 (669)
Q Consensus 229 ~~i~m~~gGhFAg~vf~~~~~~~HKtfhrYtvR~KqGg~Qs~~D~~~g~akSAGa~lRRynE~al~~~i~~lL~~W~~~l 308 (669)
+||||+||||||||||+|..||+|||||||||||||||+||++|++||++|||||+||||||++|++|||+||++|+.||
T Consensus 212 ~avfm~~GGHFAgaIfs~~~vvahKTFHRYttRaKqGgsQs~~Da~gG~ahSAGa~LRRYNE~aLkkDIQ~llasW~~~L 291 (591)
T KOG2505|consen 212 CAVFMAGGGHFAGAIFSGDKVVAHKTFHRYTTRAKQGGSQSAHDAGGGAAHSAGAQLRRYNEQALKKDIQSLLASWKKYL 291 (591)
T ss_pred eeeeeecCcchhHHHhcCcchhhhhhHHHHHHHHhcccccchhhccCCccccchHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceeEEecCCCCcccccCCCCCccCCCCCccccCCCCCCCCCHHHHHHHHHhhheEEee-ccccchh--hhhccccc-
Q 005932 309 DASICVFIYAPSTNRQLLFNGDKSYFSHQCCTIQNIPLAVRRPTLKETQRVYRQLTQVAYE-VDEKDIS--LETCESSR- 384 (669)
Q Consensus 309 ~~~~~Ifira~~~~r~~lf~~~~~~l~~~d~Rir~iPf~trrpt~~El~Rv~~~L~~v~~~-~~e~~~~--~~~~~~~~- 384 (669)
++|++||||||.+.|++||++.+++|..+|||||.|||+|+|||+.|++|||++|++|++. +++.-+. ++.+....
T Consensus 292 e~~~~IFiRA~~ssr~l~F~~~~a~is~~d~~ir~~PFttkRPt~~El~rc~~eL~~~kishv~e~~l~~reev~K~~~~ 371 (591)
T KOG2505|consen 292 EKADLIFIRAPASSRNLFFEGDGAGISTGDPRIRTFPFTTKRPTIKELSRCWQELQQVKISHVREEMLEVREEVKKLARK 371 (591)
T ss_pred ccCCeEEEEccccccceeecCCCCccCCCCCcccccCCCCCCCchHHHHHHHHHhhhhhccCCchHHhhccHHHHHHHHH
Confidence 9999999999999999999999899999999999999999999999999999999999864 4333121 11111111
Q ss_pred -cc--ccCCCCCCCChhhHhhhhh---cc--cchhhchhcccccccCCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005932 385 -IN--SISNCDPGSSKEDLADKLD---LK--ETFEASSSCKQYSEQCLSSESESEVTGITTSLHEAAQSSIAQKVLELLE 456 (669)
Q Consensus 385 -~~--~~~~~~~~~s~e~~~~~l~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLH~AA~~G~~~iV~~LLe 456 (669)
.+ .+..+....+++.....++ .+ .+.-+.++..+..+.+|.+.|+..+....|+|||||.+|...+|.+||+
T Consensus 372 v~k~~~ksee~e~k~e~~~Te~i~s~lkk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le 451 (591)
T KOG2505|consen 372 VAKKKRKSEENEDKSEEKKTEHIISRLKKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE 451 (591)
T ss_pred HhhhhcccccccchhhhhhhHHHHHHHhccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH
Confidence 11 1111111222222222221 12 2333456666777888888899999999999999999999999999999
Q ss_pred CCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005932 457 QGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLR 536 (669)
Q Consensus 457 ~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~Dw~~A~VP~plskE~e~~q~~k~~ekk~~~k~r~kE~ek~k 536 (669)
.||||+++|..|+|||+++.++++|++|+.++..|+.+|||+.+|||.|||+||+++|++|++|+++.+|++++.+++++
T Consensus 452 eg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~~~l~es~~nW~~t~i~~PltrEq~~eq~ekkkek~anqka~kk~kkelr 531 (591)
T KOG2505|consen 452 EGCDPSTKDGAGRTPYSLSANKDVKSIFIARRVLNESFGNWARTHIPEPLTREQEREQAEKKKEKKANQKAKKKLKKELR 531 (591)
T ss_pred hcCCchhcccCCCCcccccccHHHHHHHHHHHHhcccccchhhhcCCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005932 537 KAREKRAAQAQAAENAAVADNQLTPSSVLKGEAQLRGLHISKEEELKRSQAAEREKRAAAAERRMAA 603 (669)
Q Consensus 537 ke~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eEe~~~~~~~eREkRA~AAE~Rl~~ 603 (669)
+.+++++.+++++.+ +.|+.++..+. ....+.+++ + ++++|+.+||+||.|||.||+.
T Consensus 532 kaeekqk~ae~sere--g~gk~l~i~~v-~~v~~l~sl--~----~e~r~r~~re~ra~aa~~rm~~ 589 (591)
T KOG2505|consen 532 KAEEKQKYAEMSERE--GDGKLLGIPPV-LRVHQLGSL--L----PETRFRYSRESRACAAEHRMAN 589 (591)
T ss_pred HHHHHHHHHHHHhhc--cCccccCCChH-HHHHHHhcc--C----chhhHHHHHHHHHHHHHHhhcc
Confidence 988877665533222 33344322221 112222222 2 3688999999999999999964
No 2
>PTZ00448 hypothetical protein; Provisional
Probab=99.65 E-value=6.8e-17 Score=171.94 Aligned_cols=54 Identities=26% Similarity=0.476 Sum_probs=50.3
Q ss_pred ccccccccccccccCCHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHHHhhc
Q 005932 75 ALTRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEELTSD 128 (669)
Q Consensus 75 ~~~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~~~~~ 128 (669)
.++.++|++|++.|.+.++||+||||||||||||||++|+|||||++|++++++
T Consensus 311 ~~~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~eF~~~i~d 364 (373)
T PTZ00448 311 KSNMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQQD 364 (373)
T ss_pred ccCCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 345789999999999999999999999999999999999999999999999754
No 3
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=99.54 E-value=2.2e-15 Score=160.26 Aligned_cols=50 Identities=44% Similarity=0.819 Sum_probs=47.9
Q ss_pred ccccccccccccCCHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHHHh
Q 005932 77 TRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEELT 126 (669)
Q Consensus 77 ~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~~~ 126 (669)
+.|+|++|.+.|.+.++||.||||||||||||||+.++||||.++|+..+
T Consensus 2 t~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~ 51 (390)
T KOG2785|consen 2 TGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKV 51 (390)
T ss_pred CcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHH
Confidence 56899999999999999999999999999999999999999999999775
No 4
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.20 E-value=6.9e-12 Score=100.77 Aligned_cols=47 Identities=36% Similarity=0.425 Sum_probs=31.8
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeec
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLA 475 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA 475 (669)
..+|..|.||||+||..|+.++|++||..|+|++++|.+|+||+|+|
T Consensus 10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 34788999999999999999999999999999999999999999987
No 5
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.94 E-value=6.6e-10 Score=88.03 Aligned_cols=53 Identities=36% Similarity=0.379 Sum_probs=43.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 435 ITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 435 g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
|+||||+|+..|+.++|++|++.|+||+.+|.+|.||+|+|+..+..++++.+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L 53 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL 53 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence 78999999999999999999999999999999999999999988888887754
No 6
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=8.4e-09 Score=101.67 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=44.6
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQ-GLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~-GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
.+.|..||||||+||..|..++|+.||.. |+|||+.++.|+||+|||+.++-..+.+.+.
T Consensus 66 ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl 126 (226)
T KOG4412|consen 66 DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL 126 (226)
T ss_pred CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH
Confidence 34567778888888888888888888875 8888888888888888887777666666554
No 7
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.75 E-value=9.9e-09 Score=73.82 Aligned_cols=33 Identities=36% Similarity=0.335 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccC
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDE 466 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~ 466 (669)
+|.||||+||..|+.++|++||+.||||+++|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999884
No 8
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.74 E-value=1.3e-08 Score=87.16 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=53.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 435 ITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 435 g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
|.||||+|+..|+.++|++|++.|+||+.+|..|.||+++|...+..++++.+...+.
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 83 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGA 83 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999999999999999999998775543
No 9
>PF13606 Ank_3: Ankyrin repeat
Probab=98.73 E-value=1.1e-08 Score=72.76 Aligned_cols=30 Identities=37% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCC
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCI 463 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~i 463 (669)
+|+||||+||..|+.+||++||++||||+.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999974
No 10
>PHA02798 ankyrin-like protein; Provisional
Probab=98.52 E-value=7.4e-08 Score=107.86 Aligned_cols=67 Identities=22% Similarity=0.122 Sum_probs=60.7
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCcc
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKW 495 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~ 495 (669)
..+|..|+||||+||..|+.++|++||+.||||+++|..|+||+++|...+..++++.+...+|+..
T Consensus 252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 252 NQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred CCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 3467789999999999999999999999999999999999999999999999999998887666553
No 11
>PHA03095 ankyrin-like protein; Provisional
Probab=98.51 E-value=9e-08 Score=105.31 Aligned_cols=66 Identities=24% Similarity=0.242 Sum_probs=59.4
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCc
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDK 494 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~ 494 (669)
..+|..|+||||+|+..|+.++|++||+.||||+++|.+|+||+++|...+..++++.+...+++.
T Consensus 251 n~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 346688999999999999999999999999999999999999999999988999998887666543
No 12
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.46 E-value=1.3e-07 Score=105.91 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=58.7
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCC
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d 493 (669)
..+|..|+||||+||..|+.++|++||+.|||++++|..|+||+++|...+..++++.+....|+
T Consensus 250 n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred CCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 34678899999999999999999999999999999999999999999988888888887766554
No 13
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.4e-07 Score=93.26 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=56.8
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcC
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
...+.+|.|+|||||..|..+|+++||+.||.|+++|..|.||+|-|+..+-..++..+....
T Consensus 100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~ 162 (226)
T KOG4412|consen 100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG 162 (226)
T ss_pred ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence 345678999999999999999999999999999999999999999999999888888776544
No 14
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.44 E-value=2.1e-07 Score=88.02 Aligned_cols=61 Identities=21% Similarity=0.150 Sum_probs=54.3
Q ss_pred cc-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCcCCccCCCCcceeecccccHHHHHHHHHHcC
Q 005932 431 EV-TGITTSLHEAAQSSIAQKVLELLE-QGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 431 ~~-~~g~TpLH~AA~~G~~~iV~~LLe-~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
++ ..|+||||+|+..|+.++|++||. .|+|++++|..|+||+++|...+..++++.+...+
T Consensus 87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g 149 (154)
T PHA02736 87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG 149 (154)
T ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 44 489999999999999999999998 59999999999999999999888888888776443
No 15
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.39 E-value=3.6e-07 Score=89.86 Aligned_cols=65 Identities=26% Similarity=0.241 Sum_probs=53.6
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCC
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d 493 (669)
..+|.+|.||||.||++||.+||..||..||||..+...|+||+|-|+.=...++.-++...+.|
T Consensus 91 NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD 155 (228)
T KOG0512|consen 91 NTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD 155 (228)
T ss_pred cccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCc
Confidence 34788999999999999999999999999999999999999999999865555555555544443
No 16
>PHA02741 hypothetical protein; Provisional
Probab=98.33 E-value=4.9e-07 Score=87.45 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHH-CCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 434 GITTSLHEAAQSSIAQKVLELLE-QGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe-~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
.|+||||+|+..|+.++|++||. .|+|++++|.+|+||+++|...+..+++..+
T Consensus 97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L 151 (169)
T PHA02741 97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL 151 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 78899999999999999999987 5899999999999999988865555555543
No 17
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.32 E-value=4.1e-07 Score=92.21 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=63.5
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc--CCCcccccc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS--NPDKWDWHA 499 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~--~~d~~Dw~~ 499 (669)
..|..|.|||.+||+.|+..+|++||+.||||.+..+...+++.+|...+..+++..+... +-.-|||+.
T Consensus 155 ~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNG 226 (296)
T KOG0502|consen 155 ACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNG 226 (296)
T ss_pred CccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCC
Confidence 3578899999999999999999999999999999999999999999999999999988655 456799974
No 18
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.32 E-value=6.5e-07 Score=86.67 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=52.7
Q ss_pred cc-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 431 EV-TGITTSLHEAAQSSIAQKVLELLE-QGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 431 ~~-~~g~TpLH~AA~~G~~~iV~~LLe-~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
++ ..|.||||+|+..|+.++|++||. .|+|++++|..|.||+++|...+..++++.+...
T Consensus 89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ 150 (166)
T PHA02743 89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN 150 (166)
T ss_pred CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44 479999999999999999999995 7999999999999999999988877888876643
No 19
>PHA02795 ankyrin-like protein; Provisional
Probab=98.31 E-value=6.2e-07 Score=99.81 Aligned_cols=63 Identities=21% Similarity=0.088 Sum_probs=54.9
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccccc--------HHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKE--------VRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~--------~Rd~Fr~~~~~~~ 492 (669)
.+|..|.||||+|+..|+.++|++||+.|||++++|..|.||+|+|+..+ ..+++..+...++
T Consensus 216 ~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 216 QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence 36788999999999999999999999999999999999999999998665 4577776665444
No 20
>PHA02946 ankyin-like protein; Provisional
Probab=98.31 E-value=6.3e-07 Score=100.04 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=54.1
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccc--ccHHHHHHHHHHcCCC
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE--KEVRNTFRRFMASNPD 493 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~d--k~~Rd~Fr~~~~~~~d 493 (669)
..+|..|.||||+||..|+.++|++||++|||++.+|..|+||+|+|.. ....++++.+...+.+
T Consensus 66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad 132 (446)
T PHA02946 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK 132 (446)
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 3467889999999999999999999999999999999999999999863 3356666666554443
No 21
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.30 E-value=6e-07 Score=99.20 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=58.1
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD 493 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d 493 (669)
.+|..|.||||+|+..|+.++|++||+.||||+++|..|.||+++|...+..++++.+...+++
T Consensus 245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~ 308 (480)
T PHA03100 245 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 308 (480)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence 3567899999999999999999999999999999999999999999988888888888766654
No 22
>PHA02730 ankyrin-like protein; Provisional
Probab=98.29 E-value=6.5e-07 Score=104.03 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=53.3
Q ss_pred cccCCCCcHHHHHHHcC---CHHHHHHHHHCCCCcCCccCCCCcceeeccccc--HHHHHHHHHHc
Q 005932 430 SEVTGITTSLHEAAQSS---IAQKVLELLEQGLDPCIKDENGRTPYMLASEKE--VRNTFRRFMAS 490 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G---~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~--~Rd~Fr~~~~~ 490 (669)
.+|..|.||||+|+..| +.+||++||++|||++.+|..|.||+|+|+..+ ..++++.+...
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~ 101 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISS 101 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence 46778999999999997 599999999999999999999999999987644 67788877655
No 23
>PHA02791 ankyrin-like protein; Provisional
Probab=98.28 E-value=7e-07 Score=94.41 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcc-eeecccccHHHHHHHHHHcCC
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTP-YMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP-~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
.|.||||+||..|+.+||++||+.||||+.+|..|.|| +++|+..+..++++.+...+.
T Consensus 159 ~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga 218 (284)
T PHA02791 159 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI 218 (284)
T ss_pred cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC
Confidence 48999999999999999999999999999999999987 999999999999998776543
No 24
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.27 E-value=6.3e-07 Score=80.28 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=62.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCccccccCCCCCCCCH
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWDWHAAKVPSALTK 508 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~Dw~~A~VP~plsk 508 (669)
.+|+|||||||-.|+..++.+|+..|||.+-+|+.|-||+--|...++++.+..+...+.|+. -|-|..++-
T Consensus 32 ~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt----~~~PdG~~~ 103 (117)
T KOG4214|consen 32 YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT----IHAPDGTAL 103 (117)
T ss_pred hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc----eeCCCchhH
Confidence 489999999999999999999999999999999999999999999999999998876666552 356666654
No 25
>PHA02791 ankyrin-like protein; Provisional
Probab=98.27 E-value=8.1e-07 Score=93.93 Aligned_cols=56 Identities=27% Similarity=0.279 Sum_probs=38.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 435 ITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 435 g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
|+||||+|+..|+.++|++||..|||++.+|..|+||+|+|+..+..++++.+...
T Consensus 61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ 116 (284)
T PHA02791 61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 116 (284)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 56777777777777777777777777777777777777777766666666665543
No 26
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.26 E-value=5.4e-07 Score=102.09 Aligned_cols=42 Identities=43% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecc
Q 005932 435 ITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476 (669)
Q Consensus 435 g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~ 476 (669)
+.||||+||.+|+..||.+||++||||+++|.+|.||+|+|+
T Consensus 112 ~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~ 153 (600)
T KOG0509|consen 112 GSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA 153 (600)
T ss_pred CCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH
Confidence 455555555555555555555555555555555555555544
No 27
>PHA02741 hypothetical protein; Provisional
Probab=98.24 E-value=9.9e-07 Score=85.34 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=54.0
Q ss_pred ccccCCCCcHHHHHHHcCC----HHHHHHHHHCCCCcCCccC-CCCcceeecccccHHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSI----AQKVLELLEQGLDPCIKDE-NGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~----~~iV~~LLe~GADP~ikn~-~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
..+|..|+||||+|+..|+ .+++++|++.|+|++.+|. .|.||+|+|+..+..++++.+..
T Consensus 54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~ 119 (169)
T PHA02741 54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCC 119 (169)
T ss_pred hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3467889999999999999 5899999999999999995 99999999998888888887664
No 28
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.22 E-value=9.3e-07 Score=85.60 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=51.2
Q ss_pred cccCCCCcHHHHHHHcCCHHH---HHHHHHCCCCcCCcc-CCCCcceeecccccHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQK---VLELLEQGLDPCIKD-ENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~i---V~~LLe~GADP~ikn-~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
..|..|+||||+||..|+.++ |++|+..|+|++.+| ..|+||+|+|+..+..++++.+.
T Consensus 52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll 114 (166)
T PHA02743 52 RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLC 114 (166)
T ss_pred ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence 457789999999999998654 899999999999998 58999999999877778877655
No 29
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.21 E-value=1.3e-06 Score=102.20 Aligned_cols=62 Identities=32% Similarity=0.388 Sum_probs=56.5
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
..+|.+|+||||+||..|+.++|++||+.|||++++|..|.||+|+|...+..++++.+...
T Consensus 109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170 (664)
T ss_pred CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence 34678999999999999999999999999999999999999999999988888888877543
No 30
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.20 E-value=1.4e-06 Score=94.78 Aligned_cols=63 Identities=21% Similarity=0.140 Sum_probs=56.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
..+..|.||||+|+..|+.++|++||+.|+|++.+|..|.||+++|+..+..++++.+...+.
T Consensus 130 ~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 130 IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 356789999999999999999999999999999999999999999998888899888776544
No 31
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.17 E-value=1.8e-06 Score=94.07 Aligned_cols=66 Identities=21% Similarity=0.117 Sum_probs=58.4
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCC-cceeecccccHHHHHHHHHHcCCCc
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGR-TPYMLASEKEVRNTFRRFMASNPDK 494 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~Gk-TP~~lA~dk~~Rd~Fr~~~~~~~d~ 494 (669)
...|..|.||||+|+..|+.++|++||+.||||+..+..|. ||+++|...+..++++.+...+.+.
T Consensus 162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 34678999999999999999999999999999999998875 8899899889999999888766553
No 32
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.17 E-value=1.9e-06 Score=91.93 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecc
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~ 476 (669)
.|.||||+|+..|+.++|++||+.||||+.+|..|.||+++|.
T Consensus 103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~ 145 (300)
T PHA02884 103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 3555555555555555555555555555555555555555554
No 33
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.16 E-value=1.7e-06 Score=96.41 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=52.6
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccc-cHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK-EVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk-~~Rd~Fr~~~~~~~ 492 (669)
..|..|+||||+|+..|+.++|++||+.|||++.+|..|.||+|+|+.. ...++++.+...+.
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga 259 (477)
T PHA02878 196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV 259 (477)
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence 4677899999999999999999999999999999999999999999854 45677776665543
No 34
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.16 E-value=1.2e-06 Score=103.37 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=55.1
Q ss_pred cccCCCCcHHHHHHHcCCHH-----HHHHHHHCCCCcCCccCCCCcceeecccccHH-----HHHHHHHHcCCCc
Q 005932 430 SEVTGITTSLHEAAQSSIAQ-----KVLELLEQGLDPCIKDENGRTPYMLASEKEVR-----NTFRRFMASNPDK 494 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~-----iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~R-----d~Fr~~~~~~~d~ 494 (669)
..|..|+||||+||..|+.. +|++||+.|||++++|.+|+||+++|..++.. ++++.+...+|+.
T Consensus 492 ~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~ 566 (764)
T PHA02716 492 VCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNV 566 (764)
T ss_pred ccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCc
Confidence 35778999999999999874 45999999999999999999999999976643 8888887666554
No 35
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.3e-06 Score=95.07 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=52.5
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
.|..|-|+||-|.-.||.+||++||+.|||+|..|.+|+||||+|+.-...-+.+.+..
T Consensus 579 pNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe 637 (752)
T KOG0515|consen 579 PNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVE 637 (752)
T ss_pred CCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHh
Confidence 46789999999999999999999999999999999999999999997766666665543
No 36
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.13 E-value=1.8e-06 Score=92.76 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=54.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
.+|.|+|++|+.+|+.+||+.||..|||+|++|.+|-|+|+.|+..++.+++..+.+.
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence 4799999999999999999999999999999999999999999999999999988764
No 37
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.11 E-value=3e-06 Score=93.31 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=48.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
..|..|.||||+|+..|+.++|++||+.|+|+++.|..|.||+|+|+..+..++++.+...+.
T Consensus 152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 356678888888888888888888888888888888888888888887777777776665443
No 38
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.10 E-value=2.3e-06 Score=102.16 Aligned_cols=60 Identities=28% Similarity=0.293 Sum_probs=55.0
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
...|..|.||||+||..|+.++|++||++|||++.+|.+|.||+|+|+..+..++++.+.
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~ 611 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY 611 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999888888887664
No 39
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.10 E-value=2.3e-06 Score=85.96 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=34.8
Q ss_pred ccCCCCcHHHH-HHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccccc
Q 005932 431 EVTGITTSLHE-AAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKE 479 (669)
Q Consensus 431 ~~~~g~TpLH~-AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~ 479 (669)
+|..|.||||. |+..|+.+||.+||+.|+|++++|..|+||+++|...+
T Consensus 154 ~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 154 KDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred ccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 45677777774 44566777777777777777777777777777776543
No 40
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.07 E-value=3.6e-06 Score=92.68 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=49.0
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
..+..|+||||+|+..|+.++|++||+.|+|++.+|..|.||+|+|..... .++..+
T Consensus 185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~L 241 (434)
T PHA02874 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELL 241 (434)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHH
Confidence 357889999999999999999999999999999999999999999985443 344433
No 41
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.07 E-value=3.7e-06 Score=93.79 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred ccccCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcCCccC-CCCcceeecccccHHHHHHHHHHcC
Q 005932 429 ESEVTGITTSLHEAAQS-SIAQKVLELLEQGLDPCIKDE-NGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~-G~~~iV~~LLe~GADP~ikn~-~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
..+|..|.||||+|+.. ++.++|++||+.|||++.++. .|.||+|+|.. ..++++.+...+
T Consensus 228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~--~~~~v~~Ll~~g 290 (477)
T PHA02878 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK--SERKLKLLLEYG 290 (477)
T ss_pred CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHcc--CHHHHHHHHHCC
Confidence 34678999999999975 789999999999999999986 89999999953 356677665544
No 42
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.03 E-value=3.4e-06 Score=83.07 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=54.0
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecc-cccHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS-EKEVRNTFRRFM 488 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~-dk~~Rd~Fr~~~ 488 (669)
+.+...||||||-||..++.+|+.+||.+|||++.......||+|+|+ .+.+|+..+.+.
T Consensus 124 ~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll 184 (228)
T KOG0512|consen 124 EAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL 184 (228)
T ss_pred ccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence 446678999999999999999999999999999999999999999998 678888887553
No 43
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.00 E-value=5.6e-06 Score=96.46 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=54.0
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
.+|..|+||||+||..|+.++|++||+.|||+++.+..|.||+++|...+..++++.+..
T Consensus 173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~ 232 (682)
T PHA02876 173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIID 232 (682)
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999998877777776543
No 44
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.00 E-value=1.8e-06 Score=81.68 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=52.0
Q ss_pred cccCCCCcHHHHHHHcCCHH---HHHHHHHCCCCcCCcc-CCCCcceeecccccHHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQ---KVLELLEQGLDPCIKD-ENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~---iV~~LLe~GADP~ikn-~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
..|..|.||||+|+..|+.+ +|++|++.|+|++.+| ..|+||+|+|+..+..++++.+..
T Consensus 50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~ 113 (154)
T PHA02736 50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCN 113 (154)
T ss_pred HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence 35778999999999999874 6889999999999998 599999999998887888876653
No 45
>PHA02798 ankyrin-like protein; Provisional
Probab=98.00 E-value=5.6e-06 Score=92.88 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=53.0
Q ss_pred cccCCCCcHHHHHHHcC---CHHHHHHHHHCCCCcCCccCCCCcceeecccccH---HHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSS---IAQKVLELLEQGLDPCIKDENGRTPYMLASEKEV---RNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G---~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~---Rd~Fr~~~~~~~ 492 (669)
.+|..|.||||+|+..| +.++|++||+.|||++.+|..|.||+|+|...+. .++++.+...+.
T Consensus 104 ~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga 172 (489)
T PHA02798 104 KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV 172 (489)
T ss_pred CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence 35678999999999876 7899999999999999999999999999886655 777877665443
No 46
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.99 E-value=5.1e-06 Score=100.72 Aligned_cols=59 Identities=27% Similarity=0.235 Sum_probs=47.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
++..|.||||+|+..|+.++|++||++|||.+.+++.|+||+|.|+..+..+++..+..
T Consensus 536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk 594 (1143)
T KOG4177|consen 536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK 594 (1143)
T ss_pred hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHH
Confidence 44567788888888888888888888888888888888888888887777777776543
No 47
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.96 E-value=1.2e-05 Score=76.70 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=55.6
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
..+|..|+||||+|+..|+.++|.+||+.|+|++..|..|.||+++|...+...++..+..
T Consensus 141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 201 (235)
T COG0666 141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201 (235)
T ss_pred cccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence 4468899999999999999999999999999999999999999999998888888776654
No 48
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=97.95 E-value=7.9e-06 Score=85.66 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=35.8
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
|.+|.+|||+||..||..+|+.||..||-.+..|....||+|+|+..++|++++.+
T Consensus 31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkl 86 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKL 86 (448)
T ss_pred cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666654
No 49
>PHA02884 ankyrin repeat protein; Provisional
Probab=97.92 E-value=8.5e-06 Score=86.99 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=53.4
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCc-cCCCCcceeecccccHHHHHHHHHHcC
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIK-DENGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ik-n~~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
+..|.||||+||..|+.++|++||++|||++.+ +..|.||+++|+..+..++++.+...+
T Consensus 67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G 127 (300)
T PHA02884 67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG 127 (300)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 458999999999999999999999999999997 468999999999888888888776544
No 50
>PHA03095 ankyrin-like protein; Provisional
Probab=97.92 E-value=1e-05 Score=89.08 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcCCccCCCCcceeecc--cccHHHHHHHHHHcCC
Q 005932 431 EVTGITTSLHEAAQSS-IAQKVLELLEQGLDPCIKDENGRTPYMLAS--EKEVRNTFRRFMASNP 492 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G-~~~iV~~LLe~GADP~ikn~~GkTP~~lA~--dk~~Rd~Fr~~~~~~~ 492 (669)
.+..|.||||+|+..| +.++|++|++.|||++.+|..|+||+|+|. .....++++.+...+.
T Consensus 79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~ga 143 (471)
T PHA03095 79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA 143 (471)
T ss_pred CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCC
Confidence 5568999999999999 599999999999999999999999999988 3344566666655443
No 51
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.91 E-value=8.5e-06 Score=94.64 Aligned_cols=61 Identities=26% Similarity=0.247 Sum_probs=57.1
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
...|.+|.|||||||..|++++|..||..|||.+.+|.++.||+|.|+..+-.++++++..
T Consensus 267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~ 327 (929)
T KOG0510|consen 267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ 327 (929)
T ss_pred hcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence 3468899999999999999999999999999999999999999999999998999998875
No 52
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=97.90 E-value=1e-05 Score=69.22 Aligned_cols=37 Identities=35% Similarity=0.356 Sum_probs=32.0
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCcc
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKD 465 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn 465 (669)
..+|.+|+||||+|+..|+.+||++|++.|+||+++|
T Consensus 53 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 53 NSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp T-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 3466899999999999999999999999999999887
No 53
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.89 E-value=4.9e-06 Score=91.87 Aligned_cols=61 Identities=23% Similarity=0.128 Sum_probs=56.0
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
+-.|.+|.|.||+||+.||.+||++||+.|||++.++..|.|++|.|+..+..++++.+..
T Consensus 144 ~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 144 EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999999999999999997764
No 54
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=97.88 E-value=6.9e-06 Score=86.10 Aligned_cols=57 Identities=26% Similarity=0.208 Sum_probs=44.8
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
.+.+..||||+||+.||.+||+.||...||.+..|..|.||+|+|+-=+.-.+-..+
T Consensus 63 tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedl 119 (448)
T KOG0195|consen 63 TNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDL 119 (448)
T ss_pred ccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHH
Confidence 456678899999999999999999999999999999999999998844443343333
No 55
>PHA02859 ankyrin repeat protein; Provisional
Probab=97.87 E-value=1.7e-05 Score=79.73 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=45.2
Q ss_pred cccCCCCcHHHHHHH--cCCHHHHHHHHHCCCCcCCccCCCCcceee-cccccHHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQ--SSIAQKVLELLEQGLDPCIKDENGRTPYML-ASEKEVRNTFRRFMA 489 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~--~G~~~iV~~LLe~GADP~ikn~~GkTP~~l-A~dk~~Rd~Fr~~~~ 489 (669)
.+|..|.||||+|+. .|+.++|++||+.|+|++.+|..|.||+|. |...+..++++.+..
T Consensus 118 ~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~ 180 (209)
T PHA02859 118 EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS 180 (209)
T ss_pred CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence 366788999998875 467889999999999999999999999985 344445556655543
No 56
>PHA03100 ankyrin repeat protein; Provisional
Probab=97.86 E-value=1.4e-05 Score=88.49 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=55.2
Q ss_pred cccCCCCcHHHHHHHcC--CHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSS--IAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G--~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
..+..|.||||+|+..| +.++|++|++.|+|++.+|..|.||+++|...+..++++.+...+.
T Consensus 136 ~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 136 IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA 200 (480)
T ss_pred ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 35678999999999999 9999999999999999999999999999998888888887776544
No 57
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=91.48 Aligned_cols=60 Identities=37% Similarity=0.367 Sum_probs=53.4
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
.-.|..|.||||+||..|+..+|-+||..|+|++++|.+|+||+++|+.++.-...+++.
T Consensus 139 t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL 198 (600)
T KOG0509|consen 139 TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLL 198 (600)
T ss_pred ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHH
Confidence 447889999999999999999999999999999999999999999999887777555543
No 58
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.84 E-value=2.2e-05 Score=74.92 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=54.6
Q ss_pred ccccCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 429 ESEVTGITTSLHEAAQSSI-----AQKVLELLEQGL---DPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~-----~~iV~~LLe~GA---DP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
...+..|.||||+|+..|+ .++|++||+.|+ +++.+|..|.||+|+|.-.+..+++..+...
T Consensus 100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 169 (235)
T COG0666 100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169 (235)
T ss_pred ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence 4578899999999999999 999999999999 7777799999999999977777888766554
No 59
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.80 E-value=1.3e-05 Score=88.77 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=46.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHH
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNT 483 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~ 483 (669)
..|.||||+||..|+..-|++|+-.||||...|..|.|||+||.+.++-.+
T Consensus 165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 165 EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 469999999999999999999999999999999999999999997665443
No 60
>PHA02792 ankyrin-like protein; Provisional
Probab=97.78 E-value=2.1e-05 Score=90.99 Aligned_cols=48 Identities=19% Similarity=0.033 Sum_probs=45.2
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE 477 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~d 477 (669)
.+|..|+||||+|+..|+.++|++||++|||++.+|..|+||+++|..
T Consensus 405 ~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 405 KIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 467889999999999999999999999999999999999999999863
No 61
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.77 E-value=3.1e-05 Score=85.67 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
...|||--||.-|+.+||++|+++||||.|.|..|.|.+++|+-++.+++.+.+...+.
T Consensus 116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA 174 (615)
T KOG0508|consen 116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA 174 (615)
T ss_pred cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence 34599999999999999999999999999999999999999999999999998766544
No 62
>PHA02917 ankyrin-like protein; Provisional
Probab=97.75 E-value=2.8e-05 Score=91.18 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=55.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccc-ccHHHHHHHHHHcCCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE-KEVRNTFRRFMASNPD 493 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~d-k~~Rd~Fr~~~~~~~d 493 (669)
.+|..|+||||+|+..|+.+++++||+.|||++.+|..|+||+++|.. ....++++.+...+++
T Consensus 447 ~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~ 511 (661)
T PHA02917 447 MIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPT 511 (661)
T ss_pred CCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence 467889999999999999999999999999999999999999999985 4567777777655543
No 63
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=97.75 E-value=1.9e-05 Score=93.46 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=43.2
Q ss_pred ccccCCCCcHHHHHHHcCC--HHHHHHHHHCCCCcCCccCCCCcceeecc
Q 005932 429 ESEVTGITTSLHEAAQSSI--AQKVLELLEQGLDPCIKDENGRTPYMLAS 476 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~--~~iV~~LLe~GADP~ikn~~GkTP~~lA~ 476 (669)
..+|..|.||||+|+..|+ .++|++||+.|||++.+|..|.||+++|.
T Consensus 206 N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 206 NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3467889999999999995 59999999999999999999999999763
No 64
>PHA02989 ankyrin repeat protein; Provisional
Probab=97.71 E-value=3.2e-05 Score=86.91 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=35.1
Q ss_pred ccCCCCcHHHHHHHc--CCHHHHHHHHHCCCCcCC-ccCCCCcceeeccc----ccHHHHHHHHHHc
Q 005932 431 EVTGITTSLHEAAQS--SIAQKVLELLEQGLDPCI-KDENGRTPYMLASE----KEVRNTFRRFMAS 490 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~--G~~~iV~~LLe~GADP~i-kn~~GkTP~~lA~d----k~~Rd~Fr~~~~~ 490 (669)
.|..|+||||+|+.. ++.++|++||+.||||+. .|..|.||+++|.. ....++++.+...
T Consensus 141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~ 207 (494)
T PHA02989 141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK 207 (494)
T ss_pred cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC
Confidence 445666666666543 456666666666666666 45666666665542 2345556555544
No 65
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.70 E-value=3.1e-05 Score=94.17 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=65.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCC-ccccc-----cCCCCC
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPD-KWDWH-----AAKVPS 504 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d-~~Dw~-----~A~VP~ 504 (669)
.+..|+||||.||..|+.+|+.+|+++||+|+..|.+|.||+++|...+..++.+.+...+.+ .-+|. +..+|.
T Consensus 569 k~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~ 648 (1143)
T KOG4177|consen 569 KDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPE 648 (1143)
T ss_pred cCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChh
Confidence 568999999999999999999999999999999999999999999988888887765544332 34442 456776
Q ss_pred CCCHHHHH
Q 005932 505 ALTKEMEE 512 (669)
Q Consensus 505 plskE~e~ 512 (669)
.+-++...
T Consensus 649 ~v~e~~~~ 656 (1143)
T KOG4177|consen 649 DVAEELDT 656 (1143)
T ss_pred hHHHHhhh
Confidence 66555443
No 66
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.69 E-value=0.00011 Score=82.35 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=59.8
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCccccc-cCCCCCCCCHHH
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWDWH-AAKVPSALTKEM 510 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~Dw~-~A~VP~plskE~ 510 (669)
+..|-|.||+||.+|..++..+||++|.+|+++|.+|+||+|.|+-=+..++.+.+....-+.-+-. ...-|-++-.++
T Consensus 195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE 274 (527)
T ss_pred ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence 3459999999999999999999999999999999999999999997778888875543332222211 235555555543
No 67
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.67 E-value=4.1e-05 Score=91.65 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 435 ITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 435 g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
|.|+||+||..|+.++|++||++|||++.+|.+|.||+|+|+..+..++.+.+...+.
T Consensus 622 ~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 622 AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 3344556667777778888899999999999999999999999999999998776543
No 68
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.65 E-value=7e-05 Score=65.13 Aligned_cols=59 Identities=32% Similarity=0.359 Sum_probs=38.6
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
+..|.||||+|+..|+.++|.+|++.|++.+..|..|.||+++|......+++..+...
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~ 62 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 34566777777777777777777777776666666777777766655555666555443
No 69
>PHA02730 ankyrin-like protein; Provisional
Probab=97.64 E-value=5e-05 Score=88.64 Aligned_cols=64 Identities=17% Similarity=0.014 Sum_probs=54.3
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccC-CCCcceeeccc--ccHHHHHHHHHHcCCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDE-NGRTPYMLASE--KEVRNTFRRFMASNPD 493 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~-~GkTP~~lA~d--k~~Rd~Fr~~~~~~~d 493 (669)
.+|..|.||||+|+..|+.++|++||+.|||++.+|. .|.||+++|+. .+..+++..+...+|+
T Consensus 457 akD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~ 523 (672)
T PHA02730 457 MIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT 523 (672)
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence 4678999999999999999999999999999999997 59999999974 2456777766655553
No 70
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.61 E-value=3.6e-05 Score=89.63 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=54.9
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcC---CccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPC---IKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~---ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
..|.+|.||||+||.+||-.+|++||..||+-. -.|.+|.||+|+|+-.+.-.+++.++..+.
T Consensus 336 e~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 336 ESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred cccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence 357789999999999999999999999999987 349999999999998888888888876553
No 71
>PHA02917 ankyrin-like protein; Provisional
Probab=97.60 E-value=3.9e-05 Score=89.93 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=45.1
Q ss_pred cccCCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCCccCCCCcceeecccccH
Q 005932 430 SEVTGITTSLHEAAQS---SIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEV 480 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~---G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~ 480 (669)
..|.+|.||||+||.. |+.++|++||+.|||++.+|..|.||+++|+..+.
T Consensus 27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~ 80 (661)
T PHA02917 27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRH 80 (661)
T ss_pred ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 4578999999998665 88999999999999999999999999999986543
No 72
>PHA02946 ankyin-like protein; Provisional
Probab=97.58 E-value=5.4e-05 Score=84.70 Aligned_cols=60 Identities=18% Similarity=0.018 Sum_probs=48.5
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
+..|.||||+|+..|+.++|++||.+|||++.+ ..|.||+++|.......++..+...+|
T Consensus 320 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~ 379 (446)
T PHA02946 320 DIICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNP 379 (446)
T ss_pred CCccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence 346788999999999999999999999999886 479999999988777777777765444
No 73
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=97.57 E-value=1.9e-05 Score=80.41 Aligned_cols=51 Identities=25% Similarity=0.112 Sum_probs=46.5
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVR 481 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~R 481 (669)
-|.+|-|||-||+..||.++|+.||..||||++.|..|.+++++|.--+.|
T Consensus 222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr 272 (296)
T KOG0502|consen 222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR 272 (296)
T ss_pred eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence 467899999999999999999999999999999999999999999865555
No 74
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.56 E-value=0.00016 Score=81.06 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=53.3
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
..+.+|.|+||-++...+.+||.+|+++||+++..|..|+||+|.|+..+..++.+.+...+.
T Consensus 68 ~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 68 LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA 130 (527)
T ss_pred ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence 356788999999999999999999999999999999999999999998888888887655433
No 75
>PHA02876 ankyrin repeat protein; Provisional
Probab=97.55 E-value=7.6e-05 Score=87.14 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=44.3
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccc-ccHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASE-KEVRNTFRRFM 488 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~d-k~~Rd~Fr~~~ 488 (669)
.+|..|.||||+|+..|+.++|++||+.|+|++..|..|.||+|+|.. .....+++.+.
T Consensus 370 ~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll 429 (682)
T PHA02876 370 ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLI 429 (682)
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHH
Confidence 356778888888888888888888888888888888888888888863 23333444443
No 76
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.55 E-value=7.1e-05 Score=78.75 Aligned_cols=56 Identities=21% Similarity=0.124 Sum_probs=45.1
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFR 485 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr 485 (669)
.++..+.||||+||.+|+.+|.++||+.||.|.+.|.-|+|+-++|+--+.-+.+.
T Consensus 74 ~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~ 129 (396)
T KOG1710|consen 74 KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA 129 (396)
T ss_pred ccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence 46677889999999999999999999999999999988999888888554444444
No 77
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.52 E-value=4.5e-05 Score=85.41 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=46.0
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccccc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKE 479 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~ 479 (669)
..|..|.||||+|+..|+.+.+..||.+|||..++|++|++|++-|...+
T Consensus 50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 50 RRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG 99 (560)
T ss_pred cccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence 35678899999999999999999999999999999999999999888544
No 78
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.48 E-value=0.00016 Score=62.86 Aligned_cols=61 Identities=28% Similarity=0.348 Sum_probs=53.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
..+..|.||||+|+..+..+++++|+..|++++..|..|.||+++|...+..++++.+...
T Consensus 35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~ 95 (126)
T cd00204 35 AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95 (126)
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 4567899999999999999999999999999999999999999999988888888877654
No 79
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.47 E-value=9.2e-05 Score=87.41 Aligned_cols=58 Identities=24% Similarity=0.155 Sum_probs=51.0
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCcc--------------CCCCcceeecccccHHHHHHHHHH
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKD--------------ENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn--------------~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
+..|.||||+||..|+.++|++||+.|||++.++ ..|+||+++|+..+..++++.+..
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~ 196 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE 196 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc
Confidence 4579999999999999999999999999999764 359999999998888888886664
No 80
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.44 E-value=9.6e-05 Score=79.81 Aligned_cols=58 Identities=24% Similarity=0.167 Sum_probs=53.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHH-CCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLE-QGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe-~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
-||.+|.|+|+.||.+||.+||++||. -+||..+.|.+|-|+|.+|-+.+.|+|--++
T Consensus 368 iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~ml 426 (452)
T KOG0514|consen 368 IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVML 426 (452)
T ss_pred cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHH
Confidence 478899999999999999999999997 5999999999999999999999999986654
No 81
>PHA02792 ankyrin-like protein; Provisional
Probab=97.39 E-value=0.00014 Score=84.33 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=52.1
Q ss_pred ccCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCcCCccCCCCcceeeccccc--HHHHHHHHHH
Q 005932 431 EVTGITTSLHEAAQSS-------IAQKVLELLEQGLDPCIKDENGRTPYMLASEKE--VRNTFRRFMA 489 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G-------~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~--~Rd~Fr~~~~ 489 (669)
+|..|.||||+|+..+ +.+|+++||++||+++.+|..|.||+|+|.... -+++|..++.
T Consensus 171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~ 238 (631)
T PHA02792 171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFD 238 (631)
T ss_pred CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence 5667999999999999 899999999999999999999999999998766 5667776553
No 82
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0001 Score=85.36 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=54.1
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
.++..|-||||.||..||.++|.+||.+|+||.+.|+.+.||+++|+.-+-..+++.+...
T Consensus 110 a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 110 AVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred cccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence 3566799999999999999999999999999999999999999999987777777765443
No 83
>PHA02795 ankyrin-like protein; Provisional
Probab=97.36 E-value=0.00015 Score=81.21 Aligned_cols=59 Identities=12% Similarity=-0.077 Sum_probs=54.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcC
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
..+.|+||.|+..|+.++|++||++|||++.+|..|+||+++|+..+..++++.+...+
T Consensus 186 ~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G 244 (437)
T PHA02795 186 IIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG 244 (437)
T ss_pred hhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 35779999999999999999999999999999999999999999999999999876554
No 84
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.32 E-value=9.1e-05 Score=81.98 Aligned_cols=59 Identities=31% Similarity=0.271 Sum_probs=53.1
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHH-CCCCcCCccCCCCcceeecccccHHHHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLE-QGLDPCIKDENGRTPYMLASEKEVRNTFRRF 487 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe-~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~ 487 (669)
+..|++..|+||+||+.|+..+|++||+ .+.||+.+|.-|+||++=|..-.+.++++.+
T Consensus 533 ~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L 592 (622)
T KOG0506|consen 533 ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLL 592 (622)
T ss_pred cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHH
Confidence 4478899999999999999999999998 5999999999999999999977777777754
No 85
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.26 E-value=0.00059 Score=76.16 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCcC------CccCCCCcceeecccccHHHHHHHHHHcCCCcccc-ccCCCCCCCCH
Q 005932 448 AQKVLELLEQGLDPC------IKDENGRTPYMLASEKEVRNTFRRFMASNPDKWDW-HAAKVPSALTK 508 (669)
Q Consensus 448 ~~iV~~LLe~GADP~------ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~Dw-~~A~VP~plsk 508 (669)
++.|.+|.+++++-| ..+..--||||+|+..+.+..+..|...+.|-.-- ...+.|=.|+.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 788999998876653 23344569999999999999988887665333222 23455555554
No 86
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.21 E-value=0.00055 Score=44.03 Aligned_cols=29 Identities=34% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcC
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPC 462 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ 462 (669)
.|.||||+|+..|+.++|++||..|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999999875
No 87
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=97.15 E-value=0.00035 Score=62.98 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=50.1
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHH
Q 005932 429 ESEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTF 484 (669)
Q Consensus 429 ~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~F 484 (669)
..+|..|-|||--|...||.++|++||..|||-+++..+|.+.++.+-...+|.++
T Consensus 61 ~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 61 QDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL 116 (117)
T ss_pred CCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence 34678999999999999999999999999999999999999999887777777654
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=96.95 E-value=0.00041 Score=73.17 Aligned_cols=59 Identities=25% Similarity=0.153 Sum_probs=51.9
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCc-cCCCCcceeecccccHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIK-DENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ik-n~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
..|.+|+|+|..||..|+.++|++||+.|||.|.+ +..+.||++.|+-.+..++-|.++
T Consensus 40 ~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll 99 (396)
T KOG1710|consen 40 QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL 99 (396)
T ss_pred ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHH
Confidence 46789999999999999999999999999999986 788999999999777777766554
No 89
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00088 Score=75.85 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=54.2
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
.+.+|.|+||+||..|++.+.++|+=.|+|..++|.+|+||+.||...+.+..|..+...
T Consensus 657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~ 716 (749)
T KOG0705|consen 657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQY 716 (749)
T ss_pred cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHc
Confidence 456789999999999999999999999999999999999999999988888888876543
No 90
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.84 E-value=0.0004 Score=82.13 Aligned_cols=48 Identities=23% Similarity=0.063 Sum_probs=44.4
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeeccccc
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKE 479 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~ 479 (669)
..+|.||||+|+..|+.++|++|++.|||++.+|..|+||+|+|...+
T Consensus 172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence 357999999999999999999999999999999999999999998553
No 91
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=96.82 E-value=0.001 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=19.8
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELL 455 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LL 455 (669)
.+|..|.||||+|+..|+.++|++||
T Consensus 29 ~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 29 AQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp -B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 35788999999999999999999997
No 92
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.00092 Score=77.79 Aligned_cols=66 Identities=23% Similarity=0.056 Sum_probs=57.8
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCCCccc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNPDKWD 496 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~d~~D 496 (669)
.+..|.+|||+||.+|+.++|++||.++..+++.+..|.||+|+|+..++-++|..+...+.|-++
T Consensus 78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i 143 (854)
T KOG0507|consen 78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI 143 (854)
T ss_pred hhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccc
Confidence 346789999999999999999999999999999999999999999999999999988766555444
No 93
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.71 E-value=0.0014 Score=77.05 Aligned_cols=56 Identities=30% Similarity=0.345 Sum_probs=50.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHHcC
Q 005932 436 TTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 436 ~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
.+.||.||..|+.++|++||+.|+|++.+|..|+||+|+|+..+..++++.+...+
T Consensus 83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G 138 (664)
T PTZ00322 83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG 138 (664)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC
Confidence 35699999999999999999999999999999999999999888888888776543
No 94
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=96.69 E-value=0.0013 Score=65.90 Aligned_cols=59 Identities=20% Similarity=0.082 Sum_probs=52.4
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCC-CCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQG-LDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~G-ADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
..|..|||||+.||..|..+.|.|||..| |+|-+.|..|.+...+|-..+.-+..+++.
T Consensus 7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lf 66 (223)
T KOG2384|consen 7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLF 66 (223)
T ss_pred chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHH
Confidence 36788999999999999999999999999 999999999999999998777666666543
No 95
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=96.62 E-value=0.0014 Score=47.50 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=30.7
Q ss_pred ccccccccccccCCHHHHHhhcccchhhhhhhh
Q 005932 77 TRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKL 109 (669)
Q Consensus 77 ~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKr 109 (669)
+.+.|.+|++.|.+...++.|+++-.|+-|+++
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 358999999999999999999999999999985
No 96
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.33 E-value=0.0034 Score=73.73 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=58.5
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHCCCC--cCCccCCCCcceeecccccHHHHHHHHHHc-CCCcccc
Q 005932 428 SESEVTGITTSLHEAAQSSIAQKVLELLEQGLD--PCIKDENGRTPYMLASEKEVRNTFRRFMAS-NPDKWDW 497 (669)
Q Consensus 428 ~~~~~~~g~TpLH~AA~~G~~~iV~~LLe~GAD--P~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~-~~d~~Dw 497 (669)
+..+|.+|+|.||.-+..-..+|-.++|+.||+ +.++|.+|.||+.+|+--+-..+|+..+.. ....|-|
T Consensus 266 ~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~Y 338 (782)
T KOG3676|consen 266 PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAY 338 (782)
T ss_pred CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceee
Confidence 355889999999999999889999999999999 899999999999999988888888877765 4444444
No 97
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.26 E-value=0.0033 Score=73.78 Aligned_cols=57 Identities=25% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
.-|..||-+||-.|+++||++||++||||+.+|..|.|.+|+..--..-+.|..+..
T Consensus 238 YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~ 294 (782)
T KOG3676|consen 238 YFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE 294 (782)
T ss_pred eeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999986666666665543
No 98
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=95.69 E-value=0.0037 Score=50.13 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHCC-CCcCCccCCCCcceeecccccHHHHHHHHHHc
Q 005932 454 LLEQG-LDPCIKDENGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 454 LLe~G-ADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
||+.| +|++.+|..|.||+|+|+..+..++++.+...
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~ 38 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN 38 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC
Confidence 78888 99999999999999999999999999987743
No 99
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.007 Score=68.27 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=39.8
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCc-cCCCCcceeecc
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIK-DENGRTPYMLAS 476 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ik-n~~GkTP~~lA~ 476 (669)
..|.+||||||.||.+++..||+.|++.||-.-.. =.++.||++-|-
T Consensus 611 a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCe 658 (752)
T KOG0515|consen 611 AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCE 658 (752)
T ss_pred CccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcc
Confidence 47899999999999999999999999998876443 356789988775
No 100
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.18 E-value=0.013 Score=40.49 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=24.8
Q ss_pred ccccccccccCCHHHHHhhcccchhh
Q 005932 79 WTCNTCKTEFESLQDQRSHFKSDVHR 104 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kSdwHr 104 (669)
+.|.+|+..|.+...++.|++|-.|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 68999999999999999999999995
No 101
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.76 E-value=0.015 Score=39.02 Aligned_cols=25 Identities=32% Similarity=0.749 Sum_probs=23.1
Q ss_pred ccccccccccCCHHHHHhhcccchh
Q 005932 79 WTCNTCKTEFESLQDQRSHFKSDVH 103 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kSdwH 103 (669)
|.|.+|++.|.+...++.|++|--|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 5799999999999999999999766
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.59 E-value=0.013 Score=69.19 Aligned_cols=78 Identities=21% Similarity=0.168 Sum_probs=57.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecc-cccHHHHHHHHHHcCCCccccc--------cCCCC
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS-EKEVRNTFRRFMASNPDKWDWH--------AAKVP 503 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~-dk~~Rd~Fr~~~~~~~d~~Dw~--------~A~VP 503 (669)
..|+||||.|...|+.|+|.+||.+|+.-.|+|.+|..|+++-. ++..-..|. ....-|.|-|. .+.--
T Consensus 84 ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~~~~~i~~~--~d~pndvy~wG~N~N~tLGign~~ 161 (1267)
T KOG0783|consen 84 ESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRVLSSTIHPV--LDLPNDVYGWGTNVNNTLGIGNGK 161 (1267)
T ss_pred cccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhccccccccc--cCCccceeEecccccccccccCCC
Confidence 57999999999999999999999999999999999999999654 233332222 11123666773 24444
Q ss_pred CCCCHHHHH
Q 005932 504 SALTKEMEE 512 (669)
Q Consensus 504 ~plskE~e~ 512 (669)
+|=++|.++
T Consensus 162 ~~~~Pe~Vd 170 (1267)
T KOG0783|consen 162 EPSSPERVD 170 (1267)
T ss_pred CCCChHHhH
Confidence 566777776
No 103
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.57 E-value=0.018 Score=67.93 Aligned_cols=60 Identities=22% Similarity=0.155 Sum_probs=52.0
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccC-CCCcceeecccccHHHHHHHHHHc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDE-NGRTPYMLASEKEVRNTFRRFMAS 490 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~-~GkTP~~lA~dk~~Rd~Fr~~~~~ 490 (669)
.|..|+|+||+|+..|...++++||.+|+|..++|. .|.||+|-|.--+..|..-.+...
T Consensus 48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~ 108 (1267)
T KOG0783|consen 48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK 108 (1267)
T ss_pred HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence 677899999999999999999999999999999995 599999988877777766655443
No 104
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=93.72 E-value=0.038 Score=66.71 Aligned_cols=48 Identities=31% Similarity=0.251 Sum_probs=41.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCc------cCCCCcceeecccc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIK------DENGRTPYMLASEK 478 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ik------n~~GkTP~~lA~dk 478 (669)
.|.+||||||+|+..|+..+|..|++.|++|++. +-.|.|+-++|...
T Consensus 637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~ 690 (975)
T KOG0520|consen 637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN 690 (975)
T ss_pred ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence 6789999999999999999999999999887653 34589999988743
No 105
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=92.47 E-value=0.068 Score=64.99 Aligned_cols=55 Identities=16% Similarity=0.001 Sum_probs=49.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFR 485 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr 485 (669)
.+..|.|+|-+|+..|+...|.+|++.+||++..|+.-.++.+-|..|++..++.
T Consensus 1023 ~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1023 PNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred ccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheec
Confidence 5778999999999999999999999999999999999999988887887777665
No 106
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=92.10 E-value=0.084 Score=63.45 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHH
Q 005932 433 TGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVR 481 (669)
Q Consensus 433 ~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~R 481 (669)
..|.|+||+|+..|..-++++||+.|||.+.+|..|+||+|.+.-.+.-
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc
Confidence 4678999999999999999999999999999999999999988754433
No 107
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=91.49 E-value=0.076 Score=63.84 Aligned_cols=48 Identities=31% Similarity=0.345 Sum_probs=45.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEK 478 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk 478 (669)
.|..|.||||.+...|+...+..||+.||||++-|.+|++|+++|..-
T Consensus 685 ~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~ 732 (785)
T KOG0521|consen 685 LDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA 732 (785)
T ss_pred hhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence 677899999999999999999999999999999999999999999643
No 108
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=91.10 E-value=0.13 Score=38.94 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=21.1
Q ss_pred CccccccccCCCCCCC----cee--ccccccChHHHHHH
Q 005932 630 DINCSCCGASLAGKVP----FHR--YNYKYCSTSCMHVH 662 (669)
Q Consensus 630 ~~rC~~Cg~sl~gkvP----F~y--l~~~fCSt~Cl~~H 662 (669)
..+|++|+..+.++ | +.+ .-..|||..|+..+
T Consensus 6 ~~~C~~C~~~~~~~-~~~~~~~~~g~~~~FCS~~C~~~y 43 (43)
T PF06467_consen 6 MKTCSYCKKYIPNK-PTMIEVQYDGKMKQFCSQSCLSSY 43 (43)
T ss_dssp CEE-TTT--EEECC-C----EE-TTTTSCCSSHHHHHHH
T ss_pred CCcCcccCCcccCC-CccccccccCcccChhCHHHHhhC
Confidence 56999999999775 4 333 44589999999753
No 109
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=90.96 E-value=0.13 Score=62.81 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 434 GITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 434 ~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
+-.|+|-.||+.||.++|++||..||+...+|..|.+|+.+|+..++..++..+.
T Consensus 756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~ll 810 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLL 810 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHH
Confidence 4456777777777777777777777777777777777777776655555555443
No 110
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=90.47 E-value=0.12 Score=58.96 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=48.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCc--CCccCCCCcceeecccccHHHHHHHHHH
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDP--CIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP--~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
++.+..|+|||||..|+.+||+|||++|-.- ++.|..|.|++|-|+-...|.+...+..
T Consensus 895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd 955 (1004)
T KOG0782|consen 895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD 955 (1004)
T ss_pred eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh
Confidence 4566789999999999999999999998532 4467899999999987777777775543
No 111
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=89.19 E-value=0.2 Score=37.84 Aligned_cols=33 Identities=27% Similarity=0.882 Sum_probs=27.9
Q ss_pred ccccccCCCCCCC----ceeccccccChHHHHHHHHhh
Q 005932 633 CSCCGASLAGKVP----FHRYNYKYCSTSCMHVHREVL 666 (669)
Q Consensus 633 C~~Cg~sl~gkvP----F~yl~~~fCSt~Cl~~Hr~~l 666 (669)
|+.||..|.|+ | +..-.|-||..+|+.+-++.|
T Consensus 1 Cd~CG~~I~~e-P~~~k~~~~~y~fCC~tC~~~fk~k~ 37 (37)
T PF08394_consen 1 CDYCGGEITGE-PIVVKIGNKVYYFCCPTCLSQFKKKL 37 (37)
T ss_pred CCccCCcccCC-EEEEEECCeEEEEECHHHHHHHHhhC
Confidence 89999999997 5 345678899999999988765
No 112
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=87.96 E-value=0.57 Score=52.96 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=56.4
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHH---HcCCCccc-ccc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFM---ASNPDKWD-WHA 499 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~---~~~~d~~D-w~~ 499 (669)
+...+.-+++|||..|....++-++-.|.|...+|-+.+|++|+|+-.+...+++.+. ..+|+..| |+.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r 574 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR 574 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCC
Confidence 4567788999999999999999999999999999999999999999877777766443 24665554 644
No 113
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=87.82 E-value=0.27 Score=56.31 Aligned_cols=46 Identities=26% Similarity=0.207 Sum_probs=42.6
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecc
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLAS 476 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~ 476 (669)
.+.+|.|+||-||..++..|+++|+++||...-.|..|+||-+-|.
T Consensus 930 ~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq 975 (1004)
T KOG0782|consen 930 ADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ 975 (1004)
T ss_pred HhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH
Confidence 4578999999999999999999999999999999999999988664
No 114
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=86.61 E-value=0.9 Score=51.66 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred ccccCCCCcH------HHHHHHcCCHHHHHHHHHCCCCcCCcc-CCCCcceeecccccHHHHHH
Q 005932 429 ESEVTGITTS------LHEAAQSSIAQKVLELLEQGLDPCIKD-ENGRTPYMLASEKEVRNTFR 485 (669)
Q Consensus 429 ~~~~~~g~Tp------LH~AA~~G~~~iV~~LLe~GADP~ikn-~~GkTP~~lA~dk~~Rd~Fr 485 (669)
..+|.+|.|. ||-.+..|+.++..-||..|||+|..+ ..|.||+|+|+..+-..-..
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~E 184 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAE 184 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhh
Confidence 4455556554 999999999999999999999999986 56999999999655444433
No 115
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=85.69 E-value=2.6 Score=50.18 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=45.3
Q ss_pred cccccccchhhccHHHHHHHHHHHHHhhHHhhhccceeEEecCCCC---cccccCCCCCccCCCCC------ccccCCCC
Q 005932 277 AANSAGAALRRYNELALKKDLQELLASWKPYFDASICVFIYAPSTN---RQLLFNGDKSYFSHQCC------TIQNIPLA 347 (669)
Q Consensus 277 ~akSAGa~lRRynE~al~~~i~~lL~~W~~~l~~~~~Ifira~~~~---r~~lf~~~~~~l~~~d~------Rir~iPf~ 347 (669)
++-|+|+ .++..+..|| +.|.....-||||-+.| ..--|+|...+-+..-. +|-.=.|+
T Consensus 638 ~~iSVGa--------KFKtQL~~Ll----dKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyP 705 (1259)
T KOG0163|consen 638 KFISVGA--------KFKTQLSELL----DKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYP 705 (1259)
T ss_pred eEEehhH--------HHHHHHHHHH----HHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCC
Confidence 6678886 5677777777 67888899999996543 34446665311000000 11111222
Q ss_pred CCCCCHHHHHHHHHhhh
Q 005932 348 VRRPTLKETQRVYRQLT 364 (669)
Q Consensus 348 trrpt~~El~Rv~~~L~ 364 (669)
-|..|.+|--+|.+..
T Consensus 706 -SR~~F~dLYamYkk~l 721 (1259)
T KOG0163|consen 706 -SRTSFADLYAMYKKVL 721 (1259)
T ss_pred -ccccHHHHHHHHHhhC
Confidence 4678999999998643
No 116
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=84.66 E-value=7.3 Score=46.81 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 005932 589 EREKRAAAAERRMAA 603 (669)
Q Consensus 589 eREkRA~AAE~Rl~~ 603 (669)
.+|.+|+| |+|+++
T Consensus 287 QK~~~a~a-ea~l~~ 300 (1064)
T KOG1144|consen 287 QKEEAALA-EAFLKQ 300 (1064)
T ss_pred hHHHHHHH-HHHHHH
Confidence 34555544 666665
No 117
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=84.02 E-value=0.63 Score=31.68 Aligned_cols=23 Identities=35% Similarity=0.755 Sum_probs=21.0
Q ss_pred ccccccccccCCHHHHHhhcccc
Q 005932 79 WTCNTCKTEFESLQDQRSHFKSD 101 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kSd 101 (669)
+.|..|+..|.+...++.|-++-
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 68999999999999999998764
No 118
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=83.09 E-value=0.53 Score=30.32 Aligned_cols=22 Identities=27% Similarity=0.754 Sum_probs=17.9
Q ss_pred ccccccccccCCHHHHHhhccc
Q 005932 79 WTCNTCKTEFESLQDQRSHFKS 100 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kS 100 (669)
+.|..|+..|.+..+++.|++.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 4799999999999999999864
No 119
>smart00746 TRASH metallochaperone-like domain.
Probab=81.91 E-value=1.1 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.615 Sum_probs=22.8
Q ss_pred ccccccCCC-CCCC----ceeccccccChHHHHHHHH
Q 005932 633 CSCCGASLA-GKVP----FHRYNYKYCSTSCMHVHRE 664 (669)
Q Consensus 633 C~~Cg~sl~-gkvP----F~yl~~~fCSt~Cl~~Hr~ 664 (669)
|..||..+. ...+ ++--.|.|||..|+-.+.+
T Consensus 1 c~~C~~~~~~~~~~~~~~~~g~~~~FCs~~c~~~~~~ 37 (39)
T smart00746 1 CSFCGKDIYNPGTGIMVVNDGKVFYFCSSKCLSKFKK 37 (39)
T ss_pred CCCCCCCccCCCCceEEEECCEEEEEeCHHHHHHHHh
Confidence 788998886 3223 3335678999999987654
No 120
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=81.28 E-value=0.68 Score=30.31 Aligned_cols=22 Identities=23% Similarity=0.691 Sum_probs=19.9
Q ss_pred ccccccccccCCHHHHHhhccc
Q 005932 79 WTCNTCKTEFESLQDQRSHFKS 100 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kS 100 (669)
+.|..|+..|.+...++.|.+.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4799999999999999999875
No 121
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.92 E-value=3.1 Score=46.19 Aligned_cols=30 Identities=23% Similarity=0.005 Sum_probs=26.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGLD 460 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GAD 460 (669)
.|....+||.+|+.+||.++|++||++||=
T Consensus 65 vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 65 VDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 556678999999999999999999999973
No 122
>PF13606 Ank_3: Ankyrin repeat
Probab=77.09 E-value=1.1 Score=31.85 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCcceeecccccHHHHHHHHHHcCC
Q 005932 467 NGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 467 ~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
+|+||+|+|+..+..++++.+...+.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGA 26 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 58999999999999999998775443
No 123
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=76.93 E-value=16 Score=45.79 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=6.4
Q ss_pred CCCCCCHHHHH
Q 005932 347 AVRRPTLKETQ 357 (669)
Q Consensus 347 ~trrpt~~El~ 357 (669)
+..|||+.++.
T Consensus 283 PeeRPSa~QlL 293 (1021)
T PTZ00266 283 AKERPSALQCL 293 (1021)
T ss_pred hhHCcCHHHHh
Confidence 45566666654
No 124
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=76.87 E-value=24 Score=44.32 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=4.7
Q ss_pred cccccccCCC
Q 005932 632 NCSCCGASLA 641 (669)
Q Consensus 632 rC~~Cg~sl~ 641 (669)
-|-.|+.+..
T Consensus 562 ~~~~~~~~~~ 571 (1021)
T PTZ00266 562 GRNHSGVRSG 571 (1021)
T ss_pred CCCccccccc
Confidence 3445554433
No 125
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=75.69 E-value=2.5 Score=46.87 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=47.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 436 TTSLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 436 ~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
.--|-.|+..|..+.|++|++.|.+.|..|.....|+-+|+--++-++.+.+..
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLe 90 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLE 90 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHH
Confidence 345899999999999999999999999999999999999998788777776553
No 126
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=75.37 E-value=1 Score=43.61 Aligned_cols=33 Identities=33% Similarity=0.733 Sum_probs=26.2
Q ss_pred CccccccccCCCCCCCceeccccccChHHHHHHHH
Q 005932 630 DINCSCCGASLAGKVPFHRYNYKYCSTSCMHVHRE 664 (669)
Q Consensus 630 ~~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~~Hr~ 664 (669)
..-|.-|| +.++.-=.....+|||..|++.|-.
T Consensus 118 r~fCaVCG--~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 118 RKFCAVCG--YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred chhhhhcC--CCchhHHHhcCCceeechhhhhccc
Confidence 44788888 6676666677789999999999953
No 127
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=74.97 E-value=13 Score=43.96 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 005932 593 RAAAAERRMAA 603 (669)
Q Consensus 593 RA~AAE~Rl~~ 603 (669)
+-.|+|.|.++
T Consensus 360 e~ea~E~rkkr 370 (811)
T KOG4364|consen 360 EVEAQELRKKR 370 (811)
T ss_pred HHHHHHHHHHH
Confidence 44455555555
No 128
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=73.68 E-value=1.4 Score=31.35 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCCcceeecccccHHHHHHHHHHcC
Q 005932 467 NGRTPYMLASEKEVRNTFRRFMASN 491 (669)
Q Consensus 467 ~GkTP~~lA~dk~~Rd~Fr~~~~~~ 491 (669)
+|.||+|+|+..+..++++.+...+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~g 25 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHG 25 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCc
Confidence 5999999999999999999877643
No 129
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=72.19 E-value=19 Score=39.23 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 005932 576 ISKEEELKRSQAAEREKR 593 (669)
Q Consensus 576 l~~eEe~~~~~~~eREkR 593 (669)
|++|||++. ..-||+|+
T Consensus 302 lspeeQrK~-eeKe~kk~ 318 (321)
T PF07946_consen 302 LSPEEQRKY-EEKERKKE 318 (321)
T ss_pred CCHHHHHHH-HHHHHHHh
Confidence 456666533 22344444
No 130
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=68.85 E-value=2.4 Score=36.54 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=25.5
Q ss_pred cccccccccccccCCHHHHHhhcccchhhh
Q 005932 76 LTRWTCNTCKTEFESLQDQRSHFKSDVHRF 105 (669)
Q Consensus 76 ~~~~~C~~C~~~F~~~~~qr~H~kSdwHry 105 (669)
...+.|..|+..|.+...++.|.++..|..
T Consensus 48 ~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~ 77 (100)
T PF12756_consen 48 KESFRCPYCNKTFRSREALQEHMRSKHHKK 77 (100)
T ss_dssp -SSEEBSSSS-EESSHHHHHHHHHHTTTTC
T ss_pred CCCCCCCccCCCCcCHHHHHHHHcCccCCC
Confidence 346999999999999999999999998854
No 131
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=67.56 E-value=19 Score=42.64 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005932 587 AAEREKRAAAAERRMAA 603 (669)
Q Consensus 587 ~~eREkRA~AAE~Rl~~ 603 (669)
+.+-|+|-.++++=|.+
T Consensus 361 ~ea~E~rkkr~~aei~K 377 (811)
T KOG4364|consen 361 VEAQELRKKRHEAEIGK 377 (811)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34557777777777766
No 132
>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins.
Probab=67.25 E-value=3.2 Score=35.88 Aligned_cols=23 Identities=43% Similarity=1.044 Sum_probs=19.7
Q ss_pred CCccccccccCCCCCCCceeccccccChHH
Q 005932 629 TDINCSCCGASLAGKVPFHRYNYKYCSTSC 658 (669)
Q Consensus 629 ~~~rC~~Cg~sl~gkvPF~yl~~~fCSt~C 658 (669)
....|-.|+.+|.. | |.|||..|
T Consensus 48 ~~~~C~~C~R~L~d--~-----~~fCSl~C 70 (72)
T PF04640_consen 48 SGNICETCHRSLQD--P-----YRFCSLSC 70 (72)
T ss_pred CCCccCCCCCCCCC--C-----CeEEeeeE
Confidence 45789999999985 3 89999988
No 133
>PRK00807 50S ribosomal protein L24e; Validated
Probab=66.51 E-value=2.9 Score=33.83 Aligned_cols=33 Identities=24% Similarity=0.624 Sum_probs=24.6
Q ss_pred cccccccCCC-CC-CCcee---ccccccChHHHHHHHH
Q 005932 632 NCSCCGASLA-GK-VPFHR---YNYKYCSTSCMHVHRE 664 (669)
Q Consensus 632 rC~~Cg~sl~-gk-vPF~y---l~~~fCSt~Cl~~Hr~ 664 (669)
.|+.||..|. |. +.|-+ -.|.|||..|...+..
T Consensus 3 ~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~ 40 (52)
T PRK00807 3 TCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKL 40 (52)
T ss_pred ccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHc
Confidence 6999999998 43 23333 3588999999988754
No 134
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=66.24 E-value=4.4 Score=33.66 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=27.1
Q ss_pred ccccccccCCC-CCCCceec-cccccChHHHHHH
Q 005932 631 INCSCCGASLA-GKVPFHRY-NYKYCSTSCMHVH 662 (669)
Q Consensus 631 ~rC~~Cg~sl~-gkvPF~yl-~~~fCSt~Cl~~H 662 (669)
..|+.|...|. |+==|=|- +--|||..|=..+
T Consensus 17 ~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~q 50 (58)
T PF04570_consen 17 SFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQ 50 (58)
T ss_pred HHHHccCCCCCCCCCeeeeccccccccHHHHHHH
Confidence 58999999999 77667676 8999999997665
No 135
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=65.74 E-value=6 Score=37.48 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=40.9
Q ss_pred cccccccccccccccCCHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHHHh
Q 005932 74 VALTRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEELT 126 (669)
Q Consensus 74 ~~~~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~~~ 126 (669)
+-.+.+.|-.|.--|.+...+..|||+-.|+=-|| .|+ -.|.|.+|-+...
T Consensus 53 PG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK-~l~-~~PySQeeAe~A~ 103 (129)
T KOG3408|consen 53 PGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVK-ELR-EVPYSQEEAEAAA 103 (129)
T ss_pred CCCceeehhhhhhhhcchHHHHHHHhccHHHHHHH-hcc-cCCccHHHHHHhc
Confidence 34578999999999999999999999999965555 344 3477888887664
No 136
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=64.52 E-value=2.9 Score=35.49 Aligned_cols=32 Identities=25% Similarity=0.704 Sum_probs=24.8
Q ss_pred CccccccccCCCCC--CCceecc---ccccChHHHHH
Q 005932 630 DINCSCCGASLAGK--VPFHRYN---YKYCSTSCMHV 661 (669)
Q Consensus 630 ~~rC~~Cg~sl~gk--vPF~yl~---~~fCSt~Cl~~ 661 (669)
...|++||..|..= +.|=+.| |.|||.-|-+.
T Consensus 3 ~~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~ 39 (66)
T COG2075 3 VRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKL 39 (66)
T ss_pred eeEecCcCCccCCCceEEEEecCCeEEEEechhHHHH
Confidence 35799999998532 4787776 67999999763
No 137
>PRK01343 zinc-binding protein; Provisional
Probab=63.25 E-value=4.9 Score=33.34 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=18.5
Q ss_pred CccccccccCCCCCCCceeccccccChHHHH
Q 005932 630 DINCSCCGASLAGKVPFHRYNYKYCSTSCMH 660 (669)
Q Consensus 630 ~~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~ 660 (669)
..+|-.||+... .-.+-|||.+|=.
T Consensus 9 ~~~CP~C~k~~~------~~~rPFCS~RC~~ 33 (57)
T PRK01343 9 TRPCPECGKPST------REAYPFCSERCRD 33 (57)
T ss_pred CCcCCCCCCcCc------CCCCcccCHHHhh
Confidence 458999997643 3446999999953
No 138
>smart00355 ZnF_C2H2 zinc finger.
Probab=57.97 E-value=6.1 Score=25.35 Aligned_cols=21 Identities=24% Similarity=0.680 Sum_probs=19.0
Q ss_pred ccccccccccCCHHHHHhhcc
Q 005932 79 WTCNTCKTEFESLQDQRSHFK 99 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~k 99 (669)
+.|..|+..|.+...+..|.+
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 139
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=57.79 E-value=62 Score=39.45 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 005932 582 LKRSQAAEREKRA 594 (669)
Q Consensus 582 ~~~~~~~eREkRA 594 (669)
++.+++.++=+++
T Consensus 288 K~~~a~aea~l~~ 300 (1064)
T KOG1144|consen 288 KEEAALAEAFLKQ 300 (1064)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443433
No 140
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=57.62 E-value=4.2 Score=49.95 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.4
Q ss_pred CCCCcCCccCCCCcceeecccccHHHHHHHHH
Q 005932 457 QGLDPCIKDENGRTPYMLASEKEVRNTFRRFM 488 (669)
Q Consensus 457 ~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~ 488 (669)
.|...+++|..|+||+|+|+-++.-.+...+.
T Consensus 630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~ 661 (975)
T KOG0520|consen 630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLI 661 (975)
T ss_pred cccccccccCCCCcccchHhhcCHHHHHHHHH
Confidence 46677789999999999999888666666444
No 141
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.29 E-value=7.5 Score=44.86 Aligned_cols=56 Identities=27% Similarity=0.249 Sum_probs=45.5
Q ss_pred cHHHHHHHcCCHH-HHHHHH-HCCCCcCCccCCCCcceeecccccHHHHHHHHHHcCC
Q 005932 437 TSLHEAAQSSIAQ-KVLELL-EQGLDPCIKDENGRTPYMLASEKEVRNTFRRFMASNP 492 (669)
Q Consensus 437 TpLH~AA~~G~~~-iV~~LL-e~GADP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~~~~ 492 (669)
-|||+++.....+ +.+.|+ +.+...+.+|-.|.||+|+|..-+.....+.++..|.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A 79 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA 79 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC
Confidence 5799999887776 444444 4578888899999999999999899999998887654
No 142
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=57.19 E-value=9.6 Score=44.50 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=30.6
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCcC
Q 005932 430 SEVTGITTSLHEAAQSSIAQKVLELLEQGLDPC 462 (669)
Q Consensus 430 ~~~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ 462 (669)
..|.+|.|+|.||-++|.-+++.+||.+||-+.
T Consensus 689 ~rda~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 689 ARDAHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred ecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 478999999999999999999999999999764
No 143
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=56.98 E-value=15 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 005932 582 LKRSQAAEREK-RAAAAERRMAAALAL 607 (669)
Q Consensus 582 ~~~~~~~eREk-RA~AAE~Rl~~~~~~ 607 (669)
.+|+....||| .++||-+||++|.++
T Consensus 249 krm~eqrkrer~e~~aareRI~aqiaa 275 (506)
T KOG2507|consen 249 KRMREQRKRERKEGTAARERILAQIAA 275 (506)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 45555566666 467888888876443
No 144
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.13 E-value=9.7 Score=46.08 Aligned_cols=35 Identities=26% Similarity=0.075 Sum_probs=30.3
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCCccC
Q 005932 432 VTGITTSLHEAAQSSIAQKVLELLEQGLDPCIKDE 466 (669)
Q Consensus 432 ~~~g~TpLH~AA~~G~~~iV~~LLe~GADP~ikn~ 466 (669)
...+-|||.+||..++.+||++||.+|++.-..-.
T Consensus 128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~ 162 (822)
T KOG3609|consen 128 FTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD 162 (822)
T ss_pred CCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence 34578999999999999999999999999876543
No 145
>PHA00616 hypothetical protein
Probab=55.96 E-value=4.3 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred ccccccccccCCHHHHHhhccc
Q 005932 79 WTCNTCKTEFESLQDQRSHFKS 100 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kS 100 (669)
+.|..|+..|....+++.|.++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6899999999999999999875
No 146
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=55.67 E-value=9.3 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.705 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCceeccccccChHHHHHHHHh
Q 005932 631 INCSCCGASLAGKVPFHRYNYKYCSTSCMHVHREV 665 (669)
Q Consensus 631 ~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~~Hr~~ 665 (669)
..|-.||++|.. |=.|||..|=..-++.
T Consensus 4 kHC~~CG~~Ip~-------~~~fCS~~C~~~~~k~ 31 (59)
T PF09889_consen 4 KHCPVCGKPIPP-------DESFCSPKCREEYRKR 31 (59)
T ss_pred CcCCcCCCcCCc-------chhhhCHHHHHHHHHH
Confidence 479999998764 7899999997665443
No 147
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=53.54 E-value=95 Score=35.49 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhH
Q 005932 291 LALKKDLQELLASWK 305 (669)
Q Consensus 291 ~al~~~i~~lL~~W~ 305 (669)
+++.++..+|..+|.
T Consensus 85 ~~~qqe~~~LyKe~g 99 (429)
T PRK00247 85 RELQQKQKDLNKEYG 99 (429)
T ss_pred HHHHHHHHHHHHHcC
Confidence 356667777777665
No 148
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=50.19 E-value=96 Score=35.47 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 005932 591 EKRAAAAERR 600 (669)
Q Consensus 591 EkRA~AAE~R 600 (669)
+.|++|+++|
T Consensus 367 ~~~~~~~~~~ 376 (429)
T PRK00247 367 QERAAAMARA 376 (429)
T ss_pred hhHHHHHHHH
Confidence 3344444444
No 149
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=49.11 E-value=31 Score=37.57 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 005932 449 QKVLELLE 456 (669)
Q Consensus 449 ~iV~~LLe 456 (669)
.+|-.|++
T Consensus 238 ~~v~~l~D 245 (321)
T PF07946_consen 238 KLVFYLID 245 (321)
T ss_pred HHHHHHHH
Confidence 44444443
No 150
>PHA02768 hypothetical protein; Provisional
Probab=48.15 E-value=8.2 Score=31.80 Aligned_cols=25 Identities=12% Similarity=0.401 Sum_probs=22.8
Q ss_pred cccccccccccCCHHHHHhhcccch
Q 005932 78 RWTCNTCKTEFESLQDQRSHFKSDV 102 (669)
Q Consensus 78 ~~~C~~C~~~F~~~~~qr~H~kSdw 102 (669)
.+.|..|+..|...+.+..|.++-|
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~ 29 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN 29 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC
Confidence 4789999999999999999999955
No 151
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.81 E-value=77 Score=35.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005932 581 ELKRSQAAEREKRAAAAERRMAA 603 (669)
Q Consensus 581 e~~~~~~~eREkRA~AAE~Rl~~ 603 (669)
..++.+.-+|+|++....+.|++
T Consensus 414 k~rr~EakerkR~~K~~~pKMkR 436 (440)
T KOG2357|consen 414 KQRRKEAKERKRQAKKKQPKMKR 436 (440)
T ss_pred HHHHHHHHHHHHHHHhcChhhhh
Confidence 34555667777777777777765
No 152
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.09 E-value=91 Score=37.99 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.3
Q ss_pred hccHHHHHHHHHHHHH-hhHHhhhccceeEEec
Q 005932 287 RYNELALKKDLQELLA-SWKPYFDASICVFIYA 318 (669)
Q Consensus 287 RynE~al~~~i~~lL~-~W~~~l~~~~~Ifira 318 (669)
=|+...+.+.=.+.|. +-...|..|+.=||..
T Consensus 588 CYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~s 620 (1259)
T KOG0163|consen 588 CYETEQFVEKNNDALHNSLEGLIEESDNPLLVS 620 (1259)
T ss_pred eechHHHHHhccHHHHHHHHHHHHhccchHHHH
Confidence 3788888888888887 7777888887666553
No 153
>PLN03086 PRLI-interacting factor K; Provisional
Probab=46.44 E-value=1e+02 Score=36.54 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 005932 597 AERRMAA 603 (669)
Q Consensus 597 AE~Rl~~ 603 (669)
|..+|..
T Consensus 62 ~~~~~~~ 68 (567)
T PLN03086 62 ADQQMQE 68 (567)
T ss_pred HHHHHHH
Confidence 3444443
No 154
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=45.59 E-value=60 Score=37.70 Aligned_cols=24 Identities=54% Similarity=0.673 Sum_probs=15.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHH
Q 005932 579 EEELKRSQ--AAEREKRAAAAERRMAA 603 (669)
Q Consensus 579 eEe~~~~~--~~eREkRA~AAE~Rl~~ 603 (669)
+|+.+++| ..+| +||.|||+|.+.
T Consensus 309 eEEEkRr~kEeier-rraeaAEKRqk~ 334 (492)
T PF02029_consen 309 EEEEKRREKEEIER-RRAEAAEKRQKM 334 (492)
T ss_pred hhhhhhhhhHHHHH-hhhhhhHhhhhc
Confidence 34434444 4445 479999999864
No 155
>PTZ00033 60S ribosomal protein L24; Provisional
Probab=45.46 E-value=13 Score=35.51 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=24.1
Q ss_pred ccccccccCCC---CC--CCceec----cccccChHHHHHHHH
Q 005932 631 INCSCCGASLA---GK--VPFHRY----NYKYCSTSCMHVHRE 664 (669)
Q Consensus 631 ~rC~~Cg~sl~---gk--vPF~yl----~~~fCSt~Cl~~Hr~ 664 (669)
..|++||..|- |+ |+|-+| -|.|||.-|-..|..
T Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~~~~~Dgkv~~F~~sKc~~~~~~ 46 (125)
T PTZ00033 4 IACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMR 46 (125)
T ss_pred eEecCcCCcccCCCCcEeeecccCCCCCEEEEecHHHHHHHHC
Confidence 46999998874 32 454444 388999999876653
No 156
>PTZ00121 MAEBL; Provisional
Probab=45.33 E-value=1.3e+02 Score=39.28 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=4.3
Q ss_pred cHHHHHHHH
Q 005932 479 EVRNTFRRF 487 (669)
Q Consensus 479 ~~Rd~Fr~~ 487 (669)
.+-.+|+++
T Consensus 1092 ~~~~~~~~~ 1100 (2084)
T PTZ00121 1092 ATEEAFGKA 1100 (2084)
T ss_pred hhHHHhhhH
Confidence 344455544
No 157
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=43.83 E-value=8.4 Score=32.44 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=11.1
Q ss_pred CccccccccCCCCC
Q 005932 630 DINCSCCGASLAGK 643 (669)
Q Consensus 630 ~~rC~~Cg~sl~gk 643 (669)
..|||+||+.|.-+
T Consensus 4 PiRCFsCGkvi~~~ 17 (63)
T COG1644 4 PVRCFSCGKVIGHK 17 (63)
T ss_pred ceEeecCCCCHHHH
Confidence 36999999987654
No 158
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=43.64 E-value=12 Score=36.31 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=20.6
Q ss_pred CccccccccCCCCCCCceec------cccccChHHH
Q 005932 630 DINCSCCGASLAGKVPFHRY------NYKYCSTSCM 659 (669)
Q Consensus 630 ~~rC~~Cg~sl~gkvPF~yl------~~~fCSt~Cl 659 (669)
..+||+|+..+.-+ |+.-. --.|||.-|=
T Consensus 49 ~~~CwfC~q~~~~~-~~~iETl~g~~vg~FCS~ICR 83 (150)
T PHA03073 49 NDYCWFCKQDLIIA-PLFIETLKGGAVGYFCSKICR 83 (150)
T ss_pred CCcEEeeccccccC-ceEEEeecCchhhhHhHHHHH
Confidence 46899999887664 65432 2359999993
No 159
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=43.01 E-value=31 Score=30.69 Aligned_cols=39 Identities=21% Similarity=0.543 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCCceec----cccccChHHHHHHHHhhhcC
Q 005932 631 INCSCCGASLAGKVPFHRY----NYKYCSTSCMHVHREVLEDG 669 (669)
Q Consensus 631 ~rC~~Cg~sl~gkvPF~yl----~~~fCSt~Cl~~Hr~~l~~~ 669 (669)
+.|+.||..+....+|.-. +..||=.=|..++..+.+.|
T Consensus 1 ~~C~HCg~~~p~~~~~~~~~~g~~~~FCC~GC~~V~~~i~~~g 43 (88)
T PF12156_consen 1 MKCYHCGLPVPEGAKITVEIDGEERPFCCPGCQAVYQLIHENG 43 (88)
T ss_pred CCCCCCCCCCCCCCCeeeeeCCCccccccHHHHHHHHHHHHcc
Confidence 3699999999755566542 36899999999998887765
No 160
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=41.58 E-value=19 Score=30.44 Aligned_cols=27 Identities=33% Similarity=0.910 Sum_probs=18.4
Q ss_pred CccccccccCCC--CCCCceeccccccChHHHH
Q 005932 630 DINCSCCGASLA--GKVPFHRYNYKYCSTSCMH 660 (669)
Q Consensus 630 ~~rC~~Cg~sl~--gkvPF~yl~~~fCSt~Cl~ 660 (669)
..+|-.||+... ...|| +-|||.+|=.
T Consensus 6 ~v~CP~C~k~~~w~~~~~~----rPFCS~RCk~ 34 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPF----RPFCSKRCQL 34 (62)
T ss_pred cccCCCCCCcccccCCCCc----CCcccHHHHh
Confidence 358999998753 12233 3699999953
No 161
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=41.43 E-value=8.5 Score=32.48 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=10.4
Q ss_pred ccccccccCCCC
Q 005932 631 INCSCCGASLAG 642 (669)
Q Consensus 631 ~rC~~Cg~sl~g 642 (669)
.|||.||+.|..
T Consensus 5 vRCFTCGkvi~~ 16 (62)
T PRK04016 5 VRCFTCGKVIAE 16 (62)
T ss_pred eEecCCCCChHH
Confidence 599999999865
No 162
>PF01194 RNA_pol_N: RNA polymerases N / 8 kDa subunit; InterPro: IPR000268 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms of eukaryotic RNA polymerases (gene RPB10 in yeast and POLR2J in mammals) as well as to African swine fever virus (ASFV) protein CP80R []. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_N 3HKZ_N 1EF4_A 3H0G_V 2Y0S_N 2R92_J 3M4O_J 3S2D_J 1R9S_J 1Y1W_J ....
Probab=41.27 E-value=10 Score=31.82 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=9.7
Q ss_pred ccccccccCCCCC
Q 005932 631 INCSCCGASLAGK 643 (669)
Q Consensus 631 ~rC~~Cg~sl~gk 643 (669)
.|||.||..|..+
T Consensus 5 VRCFTCGkvi~~~ 17 (60)
T PF01194_consen 5 VRCFTCGKVIGNK 17 (60)
T ss_dssp SS-STTTSBTCGH
T ss_pred eecCCCCCChhHh
Confidence 5999999988653
No 163
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=41.19 E-value=8.7 Score=33.21 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.7
Q ss_pred ccccccccCCCCC
Q 005932 631 INCSCCGASLAGK 643 (669)
Q Consensus 631 ~rC~~Cg~sl~gk 643 (669)
.|||.||+.|..+
T Consensus 5 VRCFTCGkvig~~ 17 (71)
T PLN00032 5 VRCFTCGKVIGNK 17 (71)
T ss_pred eeecCCCCCcHHH
Confidence 5999999988553
No 164
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=40.39 E-value=13 Score=30.81 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=13.7
Q ss_pred ccccccccCCCCCCCceeccccccChHHHH
Q 005932 631 INCSCCGASLAGKVPFHRYNYKYCSTSCMH 660 (669)
Q Consensus 631 ~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~ 660 (669)
.+|-.||+...-. + ..--+-|||.+|=.
T Consensus 3 v~CP~C~k~~~~~-~-~n~~rPFCS~RCk~ 30 (57)
T PF03884_consen 3 VKCPICGKPVEWS-P-ENPFRPFCSERCKL 30 (57)
T ss_dssp EE-TTT--EEE-S-S-SSS--SSSSHHHHH
T ss_pred ccCCCCCCeeccc-C-CCCcCCcccHhhcc
Confidence 3799999764431 0 11335699999954
No 165
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=40.14 E-value=9.4 Score=32.82 Aligned_cols=27 Identities=33% Similarity=0.715 Sum_probs=0.0
Q ss_pred ccccccccCCHHHHHhhcccchhhhhhh
Q 005932 81 CNTCKTEFESLQDQRSHFKSDVHRFNVK 108 (669)
Q Consensus 81 C~~C~~~F~~~~~qr~H~kSdwHryNlK 108 (669)
|..|+..|.+...++.|++ ..|.+++-
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~ 28 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGFDIP 28 (100)
T ss_dssp ----------------------------
T ss_pred ccccccccccccccccccc-cccccccc
Confidence 9999999999999999995 56777765
No 166
>KOG3497 consensus DNA-directed RNA polymerase, subunit RPB10 [Transcription]
Probab=39.27 E-value=11 Score=31.72 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=11.8
Q ss_pred CccccccccCCCCC
Q 005932 630 DINCSCCGASLAGK 643 (669)
Q Consensus 630 ~~rC~~Cg~sl~gk 643 (669)
..|||.||+.+..|
T Consensus 4 PiRCFtCGKvig~K 17 (69)
T KOG3497|consen 4 PIRCFTCGKVIGDK 17 (69)
T ss_pred eeEeeecccccccc
Confidence 36999999998776
No 167
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=39.17 E-value=24 Score=34.06 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.8
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhh
Q 005932 102 VHRFNVKLTIAGKDIVKEEDFEELTS 127 (669)
Q Consensus 102 wHryNlKrkl~gl~plse~eFe~~~~ 127 (669)
+..||-+|+..|+.+||++.||.++.
T Consensus 130 L~~~N~~r~~~~~~~ls~~~FE~~md 155 (160)
T PF10513_consen 130 LELLNKKRKSDGLEPLSEEDFEIIMD 155 (160)
T ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHH
Confidence 67899999999999999999999863
No 168
>PLN02748 tRNA dimethylallyltransferase
Probab=39.02 E-value=21 Score=41.06 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=31.1
Q ss_pred ccccccccccc-ccCCHHHHHhhcccchhhhhhhhh
Q 005932 76 LTRWTCNTCKT-EFESLQDQRSHFKSDVHRFNVKLT 110 (669)
Q Consensus 76 ~~~~~C~~C~~-~F~~~~~qr~H~kSdwHryNlKrk 110 (669)
-..++|.+|+. .|....+...|.||-=||.|+|+.
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~ 451 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRL 451 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHH
Confidence 35678999997 899999999999999999999964
No 169
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=38.71 E-value=15 Score=28.57 Aligned_cols=30 Identities=23% Similarity=0.654 Sum_probs=17.9
Q ss_pred ccccccCCCCCCCceec----cccccChHHHHHH
Q 005932 633 CSCCGASLAGKVPFHRY----NYKYCSTSCMHVH 662 (669)
Q Consensus 633 C~~Cg~sl~gkvPF~yl----~~~fCSt~Cl~~H 662 (669)
+.-||..|.|..++.+. .|.|||..|...=
T Consensus 3 DPvcg~~v~~~~~~~~~y~G~~Y~FCS~~C~~~F 36 (47)
T PF04945_consen 3 DPVCGMKVPGNAAYSVEYNGRTYYFCSEGCKEKF 36 (47)
T ss_dssp B-GGG-BE-----EEEEETTEEEEESSHHHHHHH
T ss_pred CCCCCCEEccCccEEEEECCEEEEEcCHHHHHHH
Confidence 55799999777777664 4789999998753
No 170
>PTZ00121 MAEBL; Provisional
Probab=38.55 E-value=1.7e+02 Score=38.24 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.4
Q ss_pred CceeEEEe
Q 005932 237 GHFAGSVF 244 (669)
Q Consensus 237 GhFAg~vf 244 (669)
|-|+-|=+
T Consensus 727 G~l~~CP~ 734 (2084)
T PTZ00121 727 GFLASCPI 734 (2084)
T ss_pred CCcccCCC
Confidence 44444443
No 171
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=38.33 E-value=20 Score=30.08 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=22.3
Q ss_pred CCCCCccccccccCCCCCCCceeccccccChHHH
Q 005932 626 GLATDINCSCCGASLAGKVPFHRYNYKYCSTSCM 659 (669)
Q Consensus 626 ~~~~~~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl 659 (669)
++.+-..|--||+.|.. |-.|||-.|=
T Consensus 4 ~v~PH~HC~VCg~aIp~-------de~~CSe~C~ 30 (64)
T COG4068 4 GVVPHRHCVVCGKAIPP-------DEQVCSEECG 30 (64)
T ss_pred CCCCCccccccCCcCCC-------ccchHHHHHH
Confidence 45567899999999875 6789999995
No 172
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.34 E-value=1.2e+02 Score=35.69 Aligned_cols=29 Identities=31% Similarity=0.664 Sum_probs=20.0
Q ss_pred cccccccCCCCCCCce-eccccccChHHHHHHHH
Q 005932 632 NCSCCGASLAGKVPFH-RYNYKYCSTSCMHVHRE 664 (669)
Q Consensus 632 rC~~Cg~sl~gkvPF~-yl~~~fCSt~Cl~~Hr~ 664 (669)
=||.|-.- --|| -.+-+|||..|=|.|..
T Consensus 529 WC~nC~~E----Aiy~CCWNTSYCsveCQQ~HW~ 558 (588)
T KOG3612|consen 529 WCYNCLDE----AIYHCCWNTSYCSVECQQGHWP 558 (588)
T ss_pred HHHhhhHH----HHHHhhccccccCcchhhccch
Confidence 58888643 1233 23678999999998864
No 173
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.44 E-value=1.4e+02 Score=31.90 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=5.7
Q ss_pred HHHHHHHH-HHHHHH
Q 005932 588 AEREKRAA-AAERRM 601 (669)
Q Consensus 588 ~eREkRA~-AAE~Rl 601 (669)
..||-+|+ +.|+=|
T Consensus 163 kakEE~arkeheEyl 177 (299)
T KOG3054|consen 163 KAKEEEARKEHEEYL 177 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 33444442 344444
No 174
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=36.33 E-value=1.2e+02 Score=28.48 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=52.3
Q ss_pred EEEEEecCCceeEEEecCCeeEEeeccccceeecccCCcccccccCCCcccccccchhhcc-HHHHHHHHHHHHHhhHHh
Q 005932 229 RVVLLASGGHFAGSVFDGNLVVARKTFHRYVVRAKAGKKQSSKDASGKAANSAGAALRRYN-ELALKKDLQELLASWKPY 307 (669)
Q Consensus 229 ~~i~m~~gGhFAg~vf~~~~~~~HKtfhrYtvR~KqGg~Qs~~D~~~g~akSAGa~lRRyn-E~al~~~i~~lL~~W~~~ 307 (669)
++++.+..|-+.-+++.+..+..-.++....-+++.-| |.+=+||+ |.++.+-..+++..-..+
T Consensus 2 v~~v~id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~G---------------g~s~~rf~r~~~~~~f~~~i~~~l~~~ 66 (133)
T PF03464_consen 2 VGIVVIDEGEANICLLRGYGTEILQRIESNIPGKHKKG---------------GQSQRRFEREKALEKFFKEIAEALKKY 66 (133)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEE-GHCCCSSTT---------------CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCEEEEEEcCCEEEEEEEEEecCCCccCCC---------------CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999998876666655544333332222 23334665 556666555666555565
Q ss_pred ----hhccceeEEecCCCCccccc
Q 005932 308 ----FDASICVFIYAPSTNRQLLF 327 (669)
Q Consensus 308 ----l~~~~~Ifira~~~~r~~lf 327 (669)
+...+.|-|--|+.-+.-|+
T Consensus 67 f~~~~~~~~~iIiaGPGf~k~~f~ 90 (133)
T PF03464_consen 67 FLVNFDDVKCIIIAGPGFTKEEFY 90 (133)
T ss_dssp CCCHTTTCSEEEEEESTTHHHHHH
T ss_pred hhhccccccEEEEECCHHHHHHHH
Confidence 55667777777766555554
No 175
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=36.16 E-value=1.2e+02 Score=37.20 Aligned_cols=12 Identities=0% Similarity=0.396 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHh
Q 005932 115 DIVKEEDFEELT 126 (669)
Q Consensus 115 ~plse~eFe~~~ 126 (669)
+++|++||..+.
T Consensus 310 K~~Tqde~q~~a 321 (988)
T KOG2072|consen 310 KNLTQDELQRMA 321 (988)
T ss_pred ccccHHHHHHHH
Confidence 478888887764
No 176
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=36.01 E-value=32 Score=32.05 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=41.5
Q ss_pred ccccccccccccccCCHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHHHhh
Q 005932 75 ALTRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEELTS 127 (669)
Q Consensus 75 ~~~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~~~~ 127 (669)
-.+.+.|-.|.--|.+...+..|-|+-.|+--+| -|++- |.|.++-+-.+.
T Consensus 52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~K-elRev-pytQe~aeaAvg 102 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAK-ELREV-PYTQEDAEAAVG 102 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhccchhHHHHH-HHhcC-cchhHHHHHHhc
Confidence 4578899999999999999999999999976665 35554 778888776653
No 177
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=35.86 E-value=1.6e+02 Score=34.80 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=17.9
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHhhheEE
Q 005932 336 HQCCTIQNIPLAVRRPTLKETQRVYRQLTQVA 367 (669)
Q Consensus 336 ~~d~Rir~iPf~trrpt~~El~Rv~~~L~~v~ 367 (669)
..-|-.|-.-|.|- -|-.|..+|..-|.+..
T Consensus 441 aRsPGaRCYGfVTM-Sts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 441 ARSPGARCYGFVTM-STSAEATKCIEHLHRTE 471 (940)
T ss_pred CCCCCcceeEEEEe-cchHHHHHHHHHhhhhh
Confidence 33444444555544 25677788877776543
No 178
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=35.56 E-value=23 Score=29.08 Aligned_cols=34 Identities=24% Similarity=0.624 Sum_probs=25.2
Q ss_pred ccccccccCCCCC--CCceecc---ccccChHHHHHHHH
Q 005932 631 INCSCCGASLAGK--VPFHRYN---YKYCSTSCMHVHRE 664 (669)
Q Consensus 631 ~rC~~Cg~sl~gk--vPF~yl~---~~fCSt~Cl~~Hr~ 664 (669)
..|++||..|..= +.|=+.| |.|||..|-..+..
T Consensus 4 ~~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s~Kc~~~~~~ 42 (54)
T cd00472 4 EKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLR 42 (54)
T ss_pred EEecCcCCeecCCCccEEEecCCCEEEEECHHHHHHHHC
Confidence 3699999887422 3566655 78999999887764
No 179
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.96 E-value=2.4e+02 Score=33.54 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005932 588 AEREKRAAAAERRMAAALALN 608 (669)
Q Consensus 588 ~eREkRA~AAE~Rl~~~~~~~ 608 (669)
..|.||--|+|+-++++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ 67 (567)
T PLN03086 47 AQRSRRLDAIEAQIKADQQMQ 67 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666565554443
No 180
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=32.60 E-value=25 Score=24.25 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=7.0
Q ss_pred cccccccCCCC
Q 005932 632 NCSCCGASLAG 642 (669)
Q Consensus 632 rC~~Cg~sl~g 642 (669)
.|..||..+..
T Consensus 4 ~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 4 FCPNCGAEIDP 14 (26)
T ss_pred CCcccCCcCCc
Confidence 57777775543
No 181
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=31.51 E-value=34 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHhhh
Q 005932 347 AVRRPTLKETQRVYRQLT 364 (669)
Q Consensus 347 ~trrpt~~El~Rv~~~L~ 364 (669)
..+||||.||.+-|.+-.
T Consensus 38 elgrptfkevekdwkenr 55 (65)
T PF13220_consen 38 ELGRPTFKEVEKDWKENR 55 (65)
T ss_pred hhCCCcHHHHHHHHHHhh
Confidence 357999999999998643
No 182
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=30.90 E-value=47 Score=25.21 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=20.5
Q ss_pred ccccccccccc--CCHHHHHhhcccchhhhhhhh
Q 005932 78 RWTCNTCKTEF--ESLQDQRSHFKSDVHRFNVKL 109 (669)
Q Consensus 78 ~~~C~~C~~~F--~~~~~qr~H~kSdwHryNlKr 109 (669)
.+.|-.|++-| ++....+.|-.+-=|+-|+++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 47899999999 344677999999999999986
No 183
>PRK04011 peptide chain release factor 1; Provisional
Probab=29.02 E-value=1.9e+02 Score=32.83 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=60.7
Q ss_pred eEEEEEecCCceeEEEecCCeeEEeeccccceeecccCCcccccccCCCcccccccchhhccHHHHHHHHHHHHHhhHHh
Q 005932 228 LRVVLLASGGHFAGSVFDGNLVVARKTFHRYVVRAKAGKKQSSKDASGKAANSAGAALRRYNELALKKDLQELLASWKPY 307 (669)
Q Consensus 228 ~~~i~m~~gGhFAg~vf~~~~~~~HKtfhrYtvR~KqGg~Qs~~D~~~g~akSAGa~lRRynE~al~~~i~~lL~~W~~~ 307 (669)
.++++.+.+|.+.-+++.++.+..-++|..+..++...|.||+.. =.++|-..-..+.+.|-+.+.+.-..
T Consensus 141 ~~~~VvvD~~~A~i~~l~g~~~~~~~~i~~~vp~K~~~GG~S~~R---------f~r~~e~~~~~f~k~Vae~~~~~f~~ 211 (411)
T PRK04011 141 VYGLIVVDRREATIGLLKGKRIEVLKELTSFVPGKHRKGGQSARR---------FERLIEQAAHEFYKRVGEKANEAFLP 211 (411)
T ss_pred CEEEEEEecCceEEEEEeCCEEEEEEEEEeeCCCCccCCCcchhh---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777788888888889888777778887777765544454321 01122222234677777777655332
Q ss_pred --hhccceeEEecCCCCcccccCC
Q 005932 308 --FDASICVFIYAPSTNRQLLFNG 329 (669)
Q Consensus 308 --l~~~~~Ifira~~~~r~~lf~~ 329 (669)
....+.|.|-.|..-+..|+.+
T Consensus 212 ~~~~~v~~IvlaGpg~~K~~f~~~ 235 (411)
T PRK04011 212 LLEGKLKGILIGGPGPTKEEFLEG 235 (411)
T ss_pred hccccccEEEEECChhHHHHHhhh
Confidence 2578999998888778777763
No 184
>PRK13885 conjugal transfer protein TrbG; Provisional
Probab=28.11 E-value=63 Score=35.17 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=31.8
Q ss_pred EEEEec--CCceeE---EE----ecCCeeEEeeccccceeecccCCccc
Q 005932 230 VVLLAS--GGHFAG---SV----FDGNLVVARKTFHRYVVRAKAGKKQS 269 (669)
Q Consensus 230 ~i~m~~--gGhFAg---~v----f~~~~~~~HKtfhrYtvR~KqGg~Qs 269 (669)
+|+++. ||||.. .+ ++++.+|+|++|.+++.|-.-|.+|.
T Consensus 243 aifvv~~dG~~~~~~~e~lVNyrv~g~~~VVd~v~~~~~L~~Gvg~~q~ 291 (299)
T PRK13885 243 TLLVVRKEGGLFTDDETVMVNYRVQGNRYIVDTVFDKAILIAGVGSSQD 291 (299)
T ss_pred cEEEEcCCCCccCCCceeecceEEECCEEEEeccCCcEEEEEcCCCCCc
Confidence 566676 788732 22 35788999999999999999999887
No 185
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=26.64 E-value=57 Score=34.49 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=26.8
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 005932 431 EVTGITTSLHEAAQSSIAQKVLELLEQGL 459 (669)
Q Consensus 431 ~~~~g~TpLH~AA~~G~~~iV~~LLe~GA 459 (669)
.-..|.|.|--|...+..+|+.+||+.||
T Consensus 250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 250 KVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred ccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 34579999999999999999999999998
No 186
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=30 Score=39.61 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.7
Q ss_pred ccccccccccCCHHHHHhhcccchhhhhhhhhhc
Q 005932 79 WTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTIA 112 (669)
Q Consensus 79 ~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl~ 112 (669)
+.|-.|+.+|.+...+..|=.|--|+=||-. |+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~e-Lr 325 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAE-LR 325 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHHHHH-HH
Confidence 8999999999999999999999999999974 44
No 187
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=25.47 E-value=33 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.619 Sum_probs=22.8
Q ss_pred cccccccCCCCCCCceeccccccChHHHHHHH
Q 005932 632 NCSCCGASLAGKVPFHRYNYKYCSTSCMHVHR 663 (669)
Q Consensus 632 rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~~Hr 663 (669)
-|..|...+.-.-.+.+-.-.|||..|...|+
T Consensus 9 aC~~C~C~V~~~~Ai~~dGk~YCS~aCA~gH~ 40 (52)
T PF02069_consen 9 ACPSCSCVVSEEEAIQKDGKYYCSEACANGHP 40 (52)
T ss_dssp SSTT----B-TTTSEESSS-EESSHHHHHTSS
T ss_pred cCCCCEeEECchHhHHhCCEeeecHHHhccCC
Confidence 48889999886679999999999999999985
No 188
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=24.81 E-value=42 Score=24.72 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=17.2
Q ss_pred ccccccccCCCCCCCceeccccccChHHHHHHHH
Q 005932 631 INCSCCGASLAGKVPFHRYNYKYCSTSCMHVHRE 664 (669)
Q Consensus 631 ~rC~~Cg~sl~gkvPF~yl~~~fCSt~Cl~~Hr~ 664 (669)
.+|..|+. ..|||..|.+.|..
T Consensus 10 ~~C~~C~~------------~~YCs~~Cq~~~w~ 31 (37)
T PF01753_consen 10 KRCSRCKS------------VYYCSEECQRADWP 31 (37)
T ss_dssp EEETTTSS------------SEESSHHHHHHHHH
T ss_pred CcCCCCCC------------EEecCHHHHHHHHH
Confidence 37888843 47999999999873
No 189
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.26 E-value=3.4e+02 Score=34.17 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=11.1
Q ss_pred cccccchhhccHHHHHHHH
Q 005932 279 NSAGAALRRYNELALKKDL 297 (669)
Q Consensus 279 kSAGa~lRRynE~al~~~i 297 (669)
+|.+-++ +||=+++.+++
T Consensus 492 ~~~~lt~-~YNlarl~E~l 509 (1018)
T KOG2002|consen 492 KSTNLTL-KYNLARLLEEL 509 (1018)
T ss_pred ccchhHH-HHHHHHHHHhh
Confidence 4555333 57777777776
No 190
>PF13333 rve_2: Integrase core domain
Probab=23.67 E-value=28 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.356 Sum_probs=25.6
Q ss_pred cccCCHHHHHhhcccchhhhhhhhhhcCCCCCCHHHHHH
Q 005932 86 TEFESLQDQRSHFKSDVHRFNVKLTIAGKDIVKEEDFEE 124 (669)
Q Consensus 86 ~~F~~~~~qr~H~kSdwHryNlKrkl~gl~plse~eFe~ 124 (669)
..|.+.++.+.....-.+-||-+| |.|++|+ +|+.
T Consensus 15 ~~~~t~eel~~~I~~YI~~yN~~R-l~~lsP~---eyr~ 49 (52)
T PF13333_consen 15 QKFKTREELKQAIDEYIDYYNNER-LKGLSPV---EYRN 49 (52)
T ss_pred cccchHHHHHHHHHHHHHHhccCC-CCCcCHH---HHHH
Confidence 467778888887777778899997 7766554 6653
No 191
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=22.88 E-value=30 Score=28.78 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=24.7
Q ss_pred cccccccccccCCHHHHHhhc-ccchhhhh
Q 005932 78 RWTCNTCKTEFESLQDQRSHF-KSDVHRFN 106 (669)
Q Consensus 78 ~~~C~~C~~~F~~~~~qr~H~-kSdwHryN 106 (669)
-+.|.-|+.-|....++..|. |+..|.||
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~~ 46 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVNKAHGWLFG 46 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhhHHhhhhhc
Confidence 478999999999999998886 67777776
No 192
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.13 E-value=47 Score=40.55 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHHC--CC--------CcCCccCCCCcceeecccccHHHHHHHHHH
Q 005932 438 SLHEAAQSSIAQKVLELLEQ--GL--------DPCIKDENGRTPYMLASEKEVRNTFRRFMA 489 (669)
Q Consensus 438 pLH~AA~~G~~~iV~~LLe~--GA--------DP~ikn~~GkTP~~lA~dk~~Rd~Fr~~~~ 489 (669)
+|-+|...|.+.+|++||.+ ++ ++...=.-+.||+.+|+....-.+++.+..
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~ 152 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT 152 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence 55566666777777777653 22 122222346799999998888888887643
No 193
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=21.59 E-value=41 Score=36.11 Aligned_cols=26 Identities=19% Similarity=0.603 Sum_probs=21.7
Q ss_pred ccccccccccccCCHHHHHhhcccch
Q 005932 77 TRWTCNTCKTEFESLQDQRSHFKSDV 102 (669)
Q Consensus 77 ~~~~C~~C~~~F~~~~~qr~H~kSdw 102 (669)
..|.|-.|+..|.|+..+|.|.++-=
T Consensus 214 KPF~C~hC~kAFADRSNLRAHmQTHS 239 (279)
T KOG2462|consen 214 KPFSCPHCGKAFADRSNLRAHMQTHS 239 (279)
T ss_pred CCccCCcccchhcchHHHHHHHHhhc
Confidence 35789999999999999999988543
No 194
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=21.55 E-value=2.6e+02 Score=33.05 Aligned_cols=8 Identities=25% Similarity=0.962 Sum_probs=3.4
Q ss_pred eecccccc
Q 005932 647 HRYNYKYC 654 (669)
Q Consensus 647 ~yl~~~fC 654 (669)
+-+.|.||
T Consensus 376 ~pl~~~~~ 383 (591)
T KOG2412|consen 376 DPLAYDWC 383 (591)
T ss_pred CchhHHHH
Confidence 33444444
No 195
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=20.93 E-value=59 Score=32.79 Aligned_cols=36 Identities=14% Similarity=0.368 Sum_probs=30.7
Q ss_pred cccccccccccccCCHHHHHhhcccchhhhhhhhhh
Q 005932 76 LTRWTCNTCKTEFESLQDQRSHFKSDVHRFNVKLTI 111 (669)
Q Consensus 76 ~~~~~C~~C~~~F~~~~~qr~H~kSdwHryNlKrkl 111 (669)
.+.+.|.+|++.|.+.-.+..|.----|--||=-.+
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm 108 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM 108 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence 357999999999999999999999989988875433
No 196
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=1.1e+03 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=19.2
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCcCCccCCCCcce
Q 005932 438 SLHEAAQSSIAQKVLELLEQGLDPCIKDENGRTPY 472 (669)
Q Consensus 438 pLH~AA~~G~~~iV~~LLe~GADP~ikn~~GkTP~ 472 (669)
+||+=...|.-.++.+|.--+++-.+ |.-+.||+
T Consensus 20 al~~~~n~~~e~al~wl~~d~~~d~~-~ap~~~p~ 53 (290)
T KOG2689|consen 20 ALAVYGNRGIEQALDWLEMDHAGDPI-DAPLSTPL 53 (290)
T ss_pred HhhhhccccHHHHHHHHHhcccCCCc-cccccccc
Confidence 44444445555667777444444444 77777764
Done!