Query 005938
Match_columns 668
No_of_seqs 370 out of 2295
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4753 Response regulator con 100.0 3E-31 6.5E-36 291.2 16.1 119 33-153 1-123 (475)
2 COG0745 OmpR Response regulato 99.8 3.7E-20 7.9E-25 188.4 16.2 118 34-154 1-120 (229)
3 COG4565 CitB Response regulato 99.8 1E-18 2.2E-23 174.5 19.0 119 34-154 1-122 (224)
4 COG2197 CitB Response regulato 99.8 1E-18 2.2E-23 175.4 16.3 168 34-203 1-178 (211)
5 COG4566 TtrR Response regulato 99.8 1.1E-18 2.3E-23 171.6 12.6 167 32-201 3-170 (202)
6 COG2204 AtoC Response regulato 99.8 3.8E-18 8.3E-23 188.3 16.6 119 34-154 5-124 (464)
7 PF00072 Response_reg: Respons 99.8 2.8E-17 6E-22 143.9 15.8 110 36-147 1-112 (112)
8 PRK10046 dpiA two-component re 99.8 1.4E-16 2.9E-21 159.2 22.1 122 30-153 1-125 (225)
9 COG0784 CheY FOG: CheY-like re 99.7 1.2E-15 2.6E-20 136.7 16.8 119 32-151 4-125 (130)
10 PRK11466 hybrid sensory histid 99.7 6.9E-16 1.5E-20 181.9 18.4 151 1-152 630-800 (914)
11 PRK15347 two component system 99.7 9.7E-16 2.1E-20 180.1 19.0 117 33-151 690-811 (921)
12 PRK10840 transcriptional regul 99.7 1.1E-15 2.4E-20 150.8 16.3 169 33-203 3-180 (216)
13 PRK11091 aerobic respiration c 99.7 1.1E-15 2.3E-20 177.9 17.9 149 1-152 473-645 (779)
14 TIGR02956 TMAO_torS TMAO reduc 99.7 1.2E-15 2.6E-20 180.4 18.3 150 1-152 651-823 (968)
15 COG3437 Response regulator con 99.7 6.1E-16 1.3E-20 164.6 13.5 121 31-153 12-136 (360)
16 PRK10529 DNA-binding transcrip 99.7 3.7E-15 8E-20 145.3 17.4 118 34-153 2-119 (225)
17 PRK10841 hybrid sensory kinase 99.7 2.8E-15 6E-20 179.1 19.8 120 32-153 800-920 (924)
18 PRK09959 hybrid sensory histid 99.6 2.8E-15 6.1E-20 181.9 18.4 149 1-151 904-1075(1197)
19 PRK10643 DNA-binding transcrip 99.6 1E-14 2.2E-19 140.7 18.7 118 34-153 1-119 (222)
20 PLN03029 type-a response regul 99.6 4.4E-15 9.5E-20 149.7 16.4 122 32-153 7-149 (222)
21 PRK11173 two-component respons 99.6 6.4E-15 1.4E-19 145.9 17.3 118 34-153 4-121 (237)
22 PRK09483 response regulator; P 99.6 9E-15 2E-19 141.5 17.8 164 33-198 1-173 (217)
23 PRK11107 hybrid sensory histid 99.6 4.1E-15 8.8E-20 174.6 18.3 118 33-152 667-787 (919)
24 PRK10816 DNA-binding transcrip 99.6 7.8E-15 1.7E-19 143.1 17.2 117 34-152 1-118 (223)
25 PRK10336 DNA-binding transcrip 99.6 1.1E-14 2.3E-19 140.5 17.6 118 34-153 1-119 (219)
26 COG3947 Response regulator con 99.6 1.1E-15 2.4E-20 158.6 10.2 115 34-152 1-116 (361)
27 PRK10766 DNA-binding transcrip 99.6 1.4E-14 3E-19 140.9 17.1 118 34-153 3-120 (221)
28 PRK09836 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 141.6 17.3 117 34-152 1-118 (227)
29 PRK09958 DNA-binding transcrip 99.6 2.4E-14 5.3E-19 137.2 17.2 155 34-190 1-160 (204)
30 PRK11517 transcriptional regul 99.6 2.6E-14 5.5E-19 138.6 17.0 117 34-152 1-117 (223)
31 TIGR02154 PhoB phosphate regul 99.6 2.6E-14 5.6E-19 138.0 17.0 118 33-152 2-122 (226)
32 COG3706 PleD Response regulato 99.6 1.4E-14 3E-19 159.2 16.7 121 32-154 131-254 (435)
33 CHL00148 orf27 Ycf27; Reviewed 99.6 3.1E-14 6.7E-19 139.6 17.5 120 32-153 5-124 (240)
34 PRK10955 DNA-binding transcrip 99.6 2.8E-14 6E-19 139.2 16.9 117 34-153 2-118 (232)
35 PRK10701 DNA-binding transcrip 99.6 3E-14 6.5E-19 141.1 17.3 118 34-153 2-119 (240)
36 PRK10430 DNA-binding transcrip 99.6 2.9E-14 6.4E-19 143.4 17.4 119 34-152 2-123 (239)
37 PRK10161 transcriptional regul 99.6 3.6E-14 7.7E-19 139.0 17.1 117 34-152 3-122 (229)
38 PRK13856 two-component respons 99.6 3.5E-14 7.6E-19 141.5 17.1 116 35-152 3-119 (241)
39 PRK10360 DNA-binding transcrip 99.6 3.2E-14 6.8E-19 135.6 15.8 151 34-190 2-154 (196)
40 TIGR03787 marine_sort_RR prote 99.6 7.3E-14 1.6E-18 136.4 17.5 117 35-153 2-121 (227)
41 PRK09468 ompR osmolarity respo 99.6 6.2E-14 1.3E-18 138.5 17.1 118 33-152 5-123 (239)
42 PRK11083 DNA-binding response 99.6 5.9E-14 1.3E-18 135.9 16.5 117 34-152 4-121 (228)
43 PRK11697 putative two-componen 99.6 6.7E-14 1.5E-18 138.9 16.3 115 34-152 2-118 (238)
44 PRK09581 pleD response regulat 99.6 1.6E-14 3.4E-19 154.8 12.6 119 31-152 153-274 (457)
45 TIGR01387 cztR_silR_copR heavy 99.6 1.9E-13 4.2E-18 131.4 18.0 116 36-153 1-117 (218)
46 PRK14084 two-component respons 99.6 1.1E-13 2.3E-18 138.7 16.6 116 34-153 1-119 (246)
47 PRK09935 transcriptional regul 99.5 2.4E-13 5.2E-18 130.1 18.0 157 33-191 3-167 (210)
48 PRK11475 DNA-binding transcrip 99.5 8.7E-14 1.9E-18 139.8 13.9 154 46-203 3-164 (207)
49 KOG0519 Sensory transduction h 99.5 4.8E-14 1E-18 165.9 13.7 120 30-150 663-784 (786)
50 TIGR02875 spore_0_A sporulatio 99.5 2.7E-13 5.8E-18 137.7 16.6 118 33-152 2-124 (262)
51 PRK15479 transcriptional regul 99.5 8.6E-13 1.9E-17 127.2 19.1 118 34-153 1-119 (221)
52 COG4567 Response regulator con 99.5 1.3E-13 2.7E-18 131.9 12.6 112 35-148 11-123 (182)
53 PRK10100 DNA-binding transcrip 99.5 1.3E-13 2.8E-18 139.3 12.9 166 31-202 8-184 (216)
54 PRK15411 rcsA colanic acid cap 99.5 3.3E-13 7.2E-18 135.0 15.7 160 34-203 1-167 (207)
55 PRK10365 transcriptional regul 99.5 2.3E-13 5E-18 148.3 15.6 119 32-152 4-123 (441)
56 PRK10710 DNA-binding transcrip 99.5 1.2E-12 2.6E-17 128.4 17.9 117 34-152 11-127 (240)
57 PRK11361 acetoacetate metaboli 99.5 5.4E-13 1.2E-17 146.3 16.6 119 31-151 2-121 (457)
58 PRK09390 fixJ response regulat 99.5 4.9E-13 1.1E-17 125.6 13.6 119 32-152 2-121 (202)
59 PRK15369 two component system 99.5 2.2E-12 4.7E-17 121.7 17.7 158 32-191 2-167 (211)
60 PRK15115 response regulator Gl 99.5 5.7E-13 1.2E-17 145.9 15.8 118 33-152 5-123 (444)
61 PRK10923 glnG nitrogen regulat 99.5 8.7E-13 1.9E-17 145.6 17.3 117 34-152 4-121 (469)
62 PRK13837 two-component VirA-li 99.5 9.9E-13 2.2E-17 155.3 18.8 149 1-152 643-814 (828)
63 TIGR02915 PEP_resp_reg putativ 99.5 9.3E-13 2E-17 144.3 15.9 113 36-152 1-119 (445)
64 PRK10403 transcriptional regul 99.5 1.9E-12 4.2E-17 123.4 16.1 157 33-191 6-171 (215)
65 PRK12555 chemotaxis-specific m 99.5 1.1E-12 2.3E-17 139.6 15.8 102 34-137 1-106 (337)
66 PRK10651 transcriptional regul 99.5 3.2E-12 6.9E-17 122.3 17.5 162 32-195 5-177 (216)
67 PRK10610 chemotaxis regulatory 99.4 1.2E-11 2.7E-16 105.8 17.0 118 33-152 5-126 (129)
68 TIGR01818 ntrC nitrogen regula 99.4 2.5E-12 5.4E-17 141.5 16.0 115 36-152 1-116 (463)
69 PRK13435 response regulator; P 99.4 5.3E-12 1.1E-16 116.3 15.0 116 33-153 5-122 (145)
70 PRK09581 pleD response regulat 99.4 7.5E-12 1.6E-16 134.2 17.7 118 34-153 3-123 (457)
71 PRK13557 histidine kinase; Pro 99.4 7E-12 1.5E-16 137.3 17.1 150 1-151 362-534 (540)
72 PRK00742 chemotaxis-specific m 99.4 8.9E-12 1.9E-16 133.3 15.9 104 33-138 3-110 (354)
73 PRK13558 bacterio-opsin activa 99.4 5.8E-12 1.3E-16 144.4 15.0 118 33-152 7-127 (665)
74 COG2201 CheB Chemotaxis respon 99.3 1.1E-11 2.4E-16 133.2 14.4 104 33-138 1-108 (350)
75 PLN03162 golden-2 like transcr 99.3 3.1E-12 6.7E-17 135.4 8.6 63 217-284 232-294 (526)
76 PRK09191 two-component respons 99.3 9.1E-11 2E-15 118.2 15.7 116 33-152 137-254 (261)
77 COG3707 AmiR Response regulato 99.2 7.2E-11 1.6E-15 117.2 12.4 119 33-153 5-124 (194)
78 cd00156 REC Signal receiver do 99.2 3.3E-10 7.2E-15 92.0 12.9 111 37-149 1-112 (113)
79 PRK10693 response regulator of 99.1 4.3E-10 9.2E-15 118.6 12.5 89 62-152 2-92 (303)
80 COG3279 LytT Response regulato 99.1 4.9E-10 1.1E-14 115.4 10.8 116 33-152 1-119 (244)
81 PRK13503 transcriptional activ 98.9 6.7E-10 1.4E-14 113.9 4.0 61 224-289 207-267 (278)
82 PRK13502 transcriptional activ 98.9 5.9E-10 1.3E-14 115.0 3.5 62 223-289 211-272 (282)
83 PRK13501 transcriptional activ 98.9 7.5E-10 1.6E-14 115.1 4.1 62 223-289 211-272 (290)
84 PRK15029 arginine decarboxylas 98.9 8.9E-09 1.9E-13 120.8 13.2 114 34-149 1-130 (755)
85 TIGR01557 myb_SHAQKYF myb-like 98.9 2.5E-09 5.4E-14 87.4 5.8 54 220-278 1-55 (57)
86 PRK10219 DNA-binding transcrip 98.9 1.4E-09 3.1E-14 97.5 4.2 62 223-289 40-101 (107)
87 PRK13500 transcriptional activ 98.8 1.8E-09 3.9E-14 114.2 4.0 62 223-289 241-302 (312)
88 PRK10572 DNA-binding transcrip 98.8 1.9E-09 4.2E-14 111.8 4.2 61 224-289 219-279 (290)
89 TIGR02297 HpaA 4-hydroxyphenyl 98.8 2.3E-09 5.1E-14 110.5 4.0 61 224-289 222-282 (287)
90 PRK10296 DNA-binding transcrip 98.8 5E-09 1.1E-13 108.1 4.0 61 224-289 208-268 (278)
91 PRK11511 DNA-binding transcrip 98.7 7.1E-09 1.5E-13 96.6 4.3 62 223-289 44-105 (127)
92 PF12833 HTH_18: Helix-turn-he 98.7 5.3E-09 1.1E-13 89.0 2.7 62 223-289 14-76 (81)
93 COG2207 AraC AraC-type DNA-bin 98.6 2.9E-08 6.2E-13 88.7 4.1 61 224-289 56-116 (127)
94 PRK10371 DNA-binding transcrip 98.6 3.6E-08 7.7E-13 104.2 3.7 62 223-289 226-287 (302)
95 PRK09393 ftrA transcriptional 98.6 4.1E-08 8.9E-13 104.0 3.9 63 222-289 252-314 (322)
96 PRK09978 DNA-binding transcrip 98.5 3.2E-08 7E-13 103.9 2.7 60 224-289 178-237 (274)
97 PRK09685 DNA-binding transcrip 98.5 6.9E-08 1.5E-12 100.5 3.2 61 223-289 233-295 (302)
98 PRK15121 right oriC-binding tr 98.5 9.6E-08 2.1E-12 100.0 4.2 62 223-289 40-101 (289)
99 PRK09940 transcriptional regul 98.5 9.7E-08 2.1E-12 99.4 3.4 59 224-289 170-228 (253)
100 PRK15044 transcriptional regul 98.5 7.8E-08 1.7E-12 101.6 2.8 62 222-289 226-287 (295)
101 PRK15185 transcriptional regul 98.4 1.2E-07 2.7E-12 100.9 2.9 60 224-289 242-301 (309)
102 smart00342 HTH_ARAC helix_turn 98.3 4.1E-07 8.9E-12 75.6 4.1 61 224-289 21-81 (84)
103 PRK15340 transcriptional regul 98.3 3.5E-07 7.6E-12 93.2 3.9 63 222-289 143-205 (216)
104 PRK15186 AraC family transcrip 98.3 3E-07 6.5E-12 97.5 3.1 62 222-289 215-276 (291)
105 COG4977 Transcriptional regula 98.3 6.3E-07 1.4E-11 96.4 4.0 66 219-289 251-316 (328)
106 PRK10130 transcriptional regul 98.2 1.1E-06 2.4E-11 95.3 4.6 64 223-291 275-341 (350)
107 PRK15435 bifunctional DNA-bind 98.1 1.7E-06 3.8E-11 94.0 4.3 61 223-289 118-178 (353)
108 PRK11107 hybrid sensory histid 98.1 2.3E-05 5E-10 92.9 14.0 144 1-150 486-650 (919)
109 COG3706 PleD Response regulato 98.0 5.1E-06 1.1E-10 92.4 5.2 94 57-153 12-105 (435)
110 PRK10618 phosphotransfer inter 97.8 2.9E-05 6.4E-10 93.6 6.9 81 1-89 640-737 (894)
111 PF00165 HTH_AraC: Bacterial r 97.6 4.3E-05 9.4E-10 58.0 2.3 32 257-289 7-38 (42)
112 COG2169 Ada Adenosine deaminas 97.5 6.6E-05 1.4E-09 74.9 3.3 63 221-289 114-176 (187)
113 smart00448 REC cheY-homologous 97.4 0.0011 2.4E-08 46.6 8.1 55 34-90 1-55 (55)
114 PF06490 FleQ: Flagellar regul 97.2 0.0023 5E-08 58.6 9.9 105 35-149 1-107 (109)
115 cd02071 MM_CoA_mut_B12_BD meth 95.3 0.59 1.3E-05 43.3 13.8 105 40-146 10-120 (122)
116 PRK02261 methylaspartate mutas 95.1 0.82 1.8E-05 43.7 14.5 115 33-150 3-134 (137)
117 PF03709 OKR_DC_1_N: Orn/Lys/A 94.7 0.27 5.8E-06 45.4 9.9 104 46-151 6-113 (115)
118 cd02067 B12-binding B12 bindin 94.6 0.4 8.6E-06 43.7 10.6 94 40-135 10-109 (119)
119 TIGR00640 acid_CoA_mut_C methy 93.6 3 6.6E-05 39.6 14.8 117 34-152 3-129 (132)
120 cd04728 ThiG Thiazole synthase 91.3 2.2 4.7E-05 45.0 11.4 113 32-152 92-226 (248)
121 PF02310 B12-binding: B12 bind 90.8 5.2 0.00011 36.0 12.2 92 40-134 11-110 (121)
122 PRK00208 thiG thiazole synthas 90.6 2.4 5.2E-05 44.7 11.0 113 32-152 92-226 (250)
123 PRK15399 lysine decarboxylase 90.4 2.8 6E-05 50.3 12.6 114 34-151 1-122 (713)
124 PRK15400 lysine decarboxylase 88.8 3.8 8.3E-05 49.2 12.2 113 34-150 1-121 (714)
125 TIGR03815 CpaE_hom_Actino heli 88.8 1.5 3.2E-05 46.9 8.1 83 58-149 2-85 (322)
126 COG4753 Response regulator con 88.2 0.21 4.6E-06 56.8 1.3 54 231-289 208-269 (475)
127 PRK15435 bifunctional DNA-bind 87.9 0.46 1E-05 52.2 3.6 35 256-291 97-131 (353)
128 TIGR01501 MthylAspMutase methy 87.7 13 0.00028 35.8 12.8 107 42-150 14-132 (134)
129 PRK01130 N-acetylmannosamine-6 84.5 17 0.00036 36.9 12.6 101 32-135 87-202 (221)
130 PF01408 GFO_IDH_MocA: Oxidore 83.9 28 0.00062 31.0 12.6 106 34-152 1-112 (120)
131 PRK11511 DNA-binding transcrip 83.5 1 2.2E-05 42.1 3.1 33 257-290 24-56 (127)
132 PRK10219 DNA-binding transcrip 82.9 1.5 3.1E-05 39.3 3.7 33 257-290 20-52 (107)
133 cd02069 methionine_synthase_B1 82.1 16 0.00035 37.5 11.4 103 32-136 87-202 (213)
134 PRK00043 thiE thiamine-phospha 82.0 20 0.00044 35.4 11.9 69 62-134 110-187 (212)
135 cd04729 NanE N-acetylmannosami 81.8 18 0.00038 36.7 11.5 72 61-135 128-206 (219)
136 cd02070 corrinoid_protein_B12- 81.6 18 0.00039 36.4 11.4 98 33-135 82-191 (201)
137 PF10087 DUF2325: Uncharacteri 81.4 11 0.00023 33.6 8.7 90 35-125 1-93 (97)
138 PRK15320 transcriptional activ 80.9 4.5 9.7E-05 41.7 6.7 160 35-201 3-192 (251)
139 COG2169 Ada Adenosine deaminas 79.9 1.8 3.9E-05 43.8 3.6 34 256-290 95-128 (187)
140 PRK13503 transcriptional activ 79.9 1.7 3.8E-05 44.6 3.6 33 257-290 186-218 (278)
141 PRK12724 flagellar biosynthesi 79.7 9.6 0.00021 43.3 9.5 122 11-134 229-366 (432)
142 cd02072 Glm_B12_BD B12 binding 76.2 45 0.00097 32.0 11.5 103 42-147 12-127 (128)
143 PRK10558 alpha-dehydro-beta-de 76.1 25 0.00054 37.2 10.9 100 48-149 9-113 (256)
144 PRK10128 2-keto-3-deoxy-L-rham 75.9 28 0.0006 37.2 11.2 100 48-149 8-112 (267)
145 PRK10572 DNA-binding transcrip 75.7 2.1 4.7E-05 44.6 2.9 33 257-290 198-230 (290)
146 TIGR03239 GarL 2-dehydro-3-deo 75.5 30 0.00064 36.4 11.2 99 49-149 3-106 (249)
147 TIGR02297 HpaA 4-hydroxyphenyl 74.4 3.6 7.8E-05 42.6 4.1 33 257-290 201-233 (287)
148 COG4999 Uncharacterized domain 73.5 16 0.00034 35.0 7.6 109 30-146 8-121 (140)
149 cd02068 radical_SAM_B12_BD B12 72.9 32 0.00069 31.6 9.6 105 43-149 2-110 (127)
150 PRK03958 tRNA 2'-O-methylase; 72.9 35 0.00076 34.5 10.4 94 34-135 32-128 (176)
151 PRK15340 transcriptional regul 72.5 3.1 6.6E-05 43.1 3.0 55 230-290 102-156 (216)
152 cd04724 Tryptophan_synthase_al 70.3 18 0.0004 37.5 8.2 56 94-149 64-125 (242)
153 PRK09685 DNA-binding transcrip 70.2 4.6 0.0001 42.2 3.8 39 250-290 206-244 (302)
154 cd04730 NPD_like 2-Nitropropan 70.0 61 0.0013 32.7 11.8 71 62-135 108-185 (236)
155 TIGR00007 phosphoribosylformim 69.3 54 0.0012 33.2 11.2 68 65-134 146-217 (230)
156 TIGR01334 modD putative molybd 69.0 36 0.00077 36.6 10.1 69 60-132 192-260 (277)
157 TIGR02311 HpaI 2,4-dihydroxyhe 68.9 51 0.0011 34.6 11.1 99 49-149 3-106 (249)
158 PRK10371 DNA-binding transcrip 68.2 5.5 0.00012 42.5 3.9 33 257-290 206-238 (302)
159 cd03114 ArgK-like The function 67.8 5.4 0.00012 38.3 3.4 99 11-115 5-123 (148)
160 PRK09426 methylmalonyl-CoA mut 67.8 62 0.0013 39.2 12.8 117 33-151 582-708 (714)
161 TIGR02370 pyl_corrinoid methyl 67.2 43 0.00094 33.7 9.9 96 34-134 85-192 (197)
162 COG2185 Sbm Methylmalonyl-CoA 66.8 1.3E+02 0.0029 29.4 12.8 113 33-149 12-136 (143)
163 PF02254 TrkA_N: TrkA-N domain 66.8 60 0.0013 28.8 9.8 92 34-134 22-115 (116)
164 PRK07896 nicotinate-nucleotide 66.7 53 0.0011 35.6 10.9 70 59-132 202-271 (289)
165 COG0512 PabA Anthranilate/para 66.7 8.8 0.00019 39.1 4.7 76 33-112 1-80 (191)
166 cd04727 pdxS PdxS is a subunit 66.5 36 0.00077 36.8 9.4 89 61-152 117-247 (283)
167 smart00342 HTH_ARAC helix_turn 66.3 5.5 0.00012 32.6 2.8 32 258-290 1-32 (84)
168 PRK11889 flhF flagellar biosyn 66.2 27 0.00059 39.7 8.9 74 14-87 250-328 (436)
169 PRK13502 transcriptional activ 65.9 5.5 0.00012 41.3 3.3 32 258-290 192-223 (282)
170 TIGR03151 enACPred_II putative 65.2 53 0.0011 35.5 10.7 82 51-135 103-190 (307)
171 TIGR00262 trpA tryptophan synt 65.1 24 0.00051 37.2 7.8 57 93-149 73-136 (256)
172 PLN02591 tryptophan synthase 64.9 22 0.00048 37.5 7.5 58 93-150 65-128 (250)
173 PRK13111 trpA tryptophan synth 64.8 22 0.00048 37.6 7.6 57 93-149 75-138 (258)
174 CHL00200 trpA tryptophan synth 64.6 20 0.00044 38.0 7.2 57 93-149 78-140 (263)
175 PRK00278 trpC indole-3-glycero 64.6 1.2E+02 0.0027 31.9 13.1 89 42-134 145-239 (260)
176 PRK13500 transcriptional activ 64.3 6.2 0.00013 42.1 3.4 32 258-290 222-253 (312)
177 PRK09393 ftrA transcriptional 64.1 6.6 0.00014 41.9 3.6 33 257-290 233-265 (322)
178 cd00331 IGPS Indole-3-glycerol 63.6 1.4E+02 0.003 30.0 12.8 76 55-134 119-200 (217)
179 CHL00162 thiG thiamin biosynth 63.3 1.2E+02 0.0027 32.5 12.5 116 31-151 105-239 (267)
180 PF03602 Cons_hypoth95: Conser 63.2 29 0.00062 34.7 7.6 67 34-102 66-138 (183)
181 PRK15121 right oriC-binding tr 63.1 6.2 0.00013 41.6 3.1 33 257-290 20-52 (289)
182 cd00564 TMP_TenI Thiamine mono 62.8 57 0.0012 31.3 9.5 68 63-134 102-177 (196)
183 PRK12726 flagellar biosynthesi 62.2 40 0.00087 38.1 9.2 103 31-135 232-350 (407)
184 PF07688 KaiA: KaiA domain; I 62.0 30 0.00065 37.0 7.7 116 35-153 2-120 (283)
185 COG2207 AraC AraC-type DNA-bin 61.8 12 0.00025 33.1 4.2 33 256-289 34-66 (127)
186 TIGR02026 BchE magnesium-proto 61.7 88 0.0019 36.0 12.2 107 42-151 21-137 (497)
187 PRK12704 phosphodiesterase; Pr 61.3 9.6 0.00021 44.2 4.4 47 106-152 248-297 (520)
188 TIGR00343 pyridoxal 5'-phospha 61.0 48 0.001 35.9 9.2 60 93-152 184-250 (287)
189 PF01596 Methyltransf_3: O-met 60.5 45 0.00099 34.0 8.7 61 28-88 65-130 (205)
190 PRK14956 DNA polymerase III su 60.0 1.4E+02 0.003 34.8 13.2 74 79-152 121-195 (484)
191 PRK10130 transcriptional regul 59.9 8.1 0.00018 42.5 3.4 37 252-290 251-287 (350)
192 PRK11840 bifunctional sulfur c 59.6 77 0.0017 35.0 10.6 116 32-151 166-299 (326)
193 PRK14974 cell division protein 59.6 49 0.0011 36.4 9.3 100 32-135 167-287 (336)
194 cd03823 GT1_ExpE7_like This fa 59.6 1.6E+02 0.0034 29.9 12.5 66 80-151 263-328 (359)
195 PRK00748 1-(5-phosphoribosyl)- 59.3 45 0.00097 33.8 8.4 66 67-134 149-219 (233)
196 PRK06731 flhF flagellar biosyn 58.3 40 0.00087 36.0 8.1 73 14-87 84-162 (270)
197 PRK13501 transcriptional activ 57.7 9.3 0.0002 39.9 3.3 33 257-290 191-223 (290)
198 PRK05848 nicotinate-nucleotide 57.2 77 0.0017 34.0 10.0 90 36-133 155-255 (273)
199 PF00534 Glycos_transf_1: Glyc 57.1 1.3E+02 0.0028 28.0 10.7 110 32-153 46-159 (172)
200 TIGR01037 pyrD_sub1_fam dihydr 56.9 1.3E+02 0.0029 31.8 11.8 58 95-152 223-286 (300)
201 PLN02274 inosine-5'-monophosph 56.8 78 0.0017 36.8 10.7 101 32-135 259-380 (505)
202 TIGR00064 ftsY signal recognit 56.1 53 0.0011 34.9 8.6 55 31-87 98-162 (272)
203 PTZ00314 inosine-5'-monophosph 56.1 90 0.0019 36.2 11.0 101 32-135 252-373 (495)
204 PRK05458 guanosine 5'-monophos 56.0 1.6E+02 0.0035 32.4 12.5 98 35-135 113-230 (326)
205 TIGR03088 stp2 sugar transfera 56.0 92 0.002 33.1 10.5 107 33-151 229-337 (374)
206 PRK05749 3-deoxy-D-manno-octul 55.4 1.1E+02 0.0025 33.5 11.4 111 33-151 262-387 (425)
207 PRK01911 ppnK inorganic polyph 54.9 51 0.0011 35.6 8.3 102 34-154 1-122 (292)
208 cd04726 KGPDC_HPS 3-Keto-L-gul 54.8 2E+02 0.0043 28.3 12.0 99 32-134 76-185 (202)
209 PRK07259 dihydroorotate dehydr 54.7 1.2E+02 0.0027 32.2 11.1 57 95-151 223-285 (301)
210 cd04722 TIM_phosphate_binding 54.4 88 0.0019 29.4 9.1 55 80-134 137-198 (200)
211 PRK05703 flhF flagellar biosyn 54.2 1.1E+02 0.0023 34.8 11.1 120 14-134 230-364 (424)
212 PRK13587 1-(5-phosphoribosyl)- 54.1 70 0.0015 33.2 8.9 67 67-134 151-220 (234)
213 cd02065 B12-binding_like B12 b 53.7 79 0.0017 28.3 8.2 70 40-111 10-85 (125)
214 PLN02871 UDP-sulfoquinovose:DA 53.5 1.4E+02 0.0031 33.4 12.0 105 33-151 290-399 (465)
215 cd04723 HisA_HisF Phosphoribos 52.6 73 0.0016 32.9 8.8 68 65-134 147-217 (233)
216 PRK10296 DNA-binding transcrip 52.6 11 0.00025 38.9 2.9 31 259-290 189-219 (278)
217 PRK15484 lipopolysaccharide 1, 52.6 2E+02 0.0042 31.4 12.6 109 33-151 224-343 (380)
218 PRK06096 molybdenum transport 52.2 87 0.0019 33.8 9.5 70 59-132 192-261 (284)
219 PRK05567 inosine 5'-monophosph 52.1 1.2E+02 0.0025 35.0 11.1 99 32-134 239-359 (486)
220 PRK08385 nicotinate-nucleotide 51.3 2.7E+02 0.0058 30.1 12.9 92 36-132 157-256 (278)
221 PRK10669 putative cation:proto 51.3 1.2E+02 0.0026 35.2 11.2 93 32-133 439-533 (558)
222 cd06533 Glyco_transf_WecG_TagA 51.1 86 0.0019 30.9 8.6 78 32-113 45-131 (171)
223 cd01424 MGS_CPS_II Methylglyox 51.0 1.2E+02 0.0025 27.4 8.8 24 39-62 8-31 (110)
224 PRK09922 UDP-D-galactose:(gluc 50.1 1.2E+02 0.0026 32.4 10.3 110 33-153 210-325 (359)
225 PF09936 Methyltrn_RNA_4: SAM- 50.0 1.1E+02 0.0024 31.3 9.1 100 35-139 44-162 (185)
226 PRK06843 inosine 5-monophospha 49.5 1.6E+02 0.0034 33.5 11.3 101 31-134 163-284 (404)
227 TIGR00735 hisF imidazoleglycer 49.4 1.7E+02 0.0036 30.5 10.9 79 67-147 158-247 (254)
228 cd03819 GT1_WavL_like This fam 49.4 2.4E+02 0.0052 29.1 12.1 109 33-151 216-329 (355)
229 cd03813 GT1_like_3 This family 49.2 1.5E+02 0.0032 33.5 11.2 106 34-151 325-441 (475)
230 COG0157 NadC Nicotinate-nucleo 49.0 2E+02 0.0044 31.2 11.4 89 36-131 161-258 (280)
231 TIGR01761 thiaz-red thiazoliny 49.0 1.9E+02 0.004 32.1 11.6 105 32-151 2-113 (343)
232 PRK13125 trpA tryptophan synth 48.6 2E+02 0.0043 29.9 11.3 89 45-136 117-215 (244)
233 TIGR00262 trpA tryptophan synt 48.6 2.4E+02 0.0052 29.8 12.0 102 32-136 114-228 (256)
234 PF04321 RmlD_sub_bind: RmlD s 48.5 63 0.0014 34.1 7.7 80 34-115 1-102 (286)
235 TIGR03499 FlhF flagellar biosy 47.9 20 0.00044 38.0 3.9 76 11-87 200-280 (282)
236 cd04732 HisA HisA. Phosphorib 47.6 2.1E+02 0.0045 28.9 11.1 68 65-134 147-218 (234)
237 PRK10416 signal recognition pa 47.5 92 0.002 33.9 8.9 92 31-124 140-252 (318)
238 cd04962 GT1_like_5 This family 47.4 1.6E+02 0.0035 30.8 10.6 106 34-151 228-335 (371)
239 cd00381 IMPDH IMPDH: The catal 47.2 2E+02 0.0043 31.5 11.4 99 32-134 105-225 (325)
240 PRK05718 keto-hydroxyglutarate 46.9 2.3E+02 0.005 29.2 11.2 90 51-144 10-102 (212)
241 TIGR01163 rpe ribulose-phospha 46.8 1.8E+02 0.0038 28.7 10.2 54 93-146 43-97 (210)
242 PRK07428 nicotinate-nucleotide 46.7 1.5E+02 0.0033 32.0 10.3 93 36-133 169-269 (288)
243 PLN02591 tryptophan synthase 46.0 2.5E+02 0.0055 29.7 11.6 103 32-136 105-219 (250)
244 PRK07649 para-aminobenzoate/an 45.7 25 0.00053 35.4 3.9 49 36-86 2-50 (195)
245 PRK02083 imidazole glycerol ph 44.7 2.2E+02 0.0047 29.5 10.9 78 67-147 156-245 (253)
246 KOG4175 Tryptophan synthase al 44.5 63 0.0014 33.6 6.5 42 105-146 94-141 (268)
247 KOG1601 GATA-4/5/6 transcripti 44.3 2.7 5.9E-05 42.1 -3.2 112 37-150 19-137 (340)
248 PF03060 NMO: Nitronate monoox 44.0 1.6E+02 0.0036 32.0 10.2 81 52-135 131-219 (330)
249 cd03313 enolase Enolase: Enola 43.3 1.7E+02 0.0037 33.0 10.5 105 40-147 210-347 (408)
250 cd00331 IGPS Indole-3-glycerol 43.1 1.1E+02 0.0024 30.8 8.2 68 82-149 48-117 (217)
251 TIGR00734 hisAF_rel hisA/hisF 42.4 1.4E+02 0.003 30.8 8.9 68 65-134 142-212 (221)
252 PF03808 Glyco_tran_WecB: Glyc 42.4 1.5E+02 0.0033 29.0 8.9 76 32-111 47-131 (172)
253 TIGR00693 thiE thiamine-phosph 42.2 1.8E+02 0.0039 28.6 9.4 70 61-134 101-179 (196)
254 KOG1562 Spermidine synthase [A 42.2 72 0.0016 35.0 6.9 64 35-100 147-216 (337)
255 PRK13125 trpA tryptophan synth 42.1 96 0.0021 32.2 7.8 54 96-149 64-125 (244)
256 PF01729 QRPTase_C: Quinolinat 42.1 77 0.0017 31.5 6.7 94 36-133 53-153 (169)
257 PF04131 NanE: Putative N-acet 41.7 2.3E+02 0.005 29.1 10.1 100 32-135 63-173 (192)
258 PRK00994 F420-dependent methyl 41.1 1.6E+02 0.0034 31.5 8.9 80 56-138 30-118 (277)
259 PRK06774 para-aminobenzoate sy 41.1 34 0.00074 33.9 4.1 73 36-112 2-78 (191)
260 TIGR03365 Bsubt_queE 7-cyano-7 41.1 3.6E+02 0.0078 28.0 11.8 100 35-139 75-187 (238)
261 cd04731 HisF The cyclase subun 40.9 1.4E+02 0.003 30.6 8.7 70 63-134 26-99 (243)
262 PRK14098 glycogen synthase; Pr 40.7 2.1E+02 0.0045 32.9 10.9 112 33-151 336-450 (489)
263 PRK14949 DNA polymerase III su 40.5 72 0.0016 39.8 7.4 72 79-152 119-193 (944)
264 PRK15427 colanic acid biosynth 40.3 3.6E+02 0.0078 29.9 12.3 107 34-151 254-369 (406)
265 cd05844 GT1_like_7 Glycosyltra 39.7 3.4E+02 0.0074 28.3 11.6 108 33-151 219-335 (367)
266 PRK07695 transcriptional regul 39.6 2.6E+02 0.0056 27.9 10.2 67 62-132 101-174 (201)
267 PF13384 HTH_23: Homeodomain-l 39.5 23 0.00049 27.3 2.0 32 250-283 10-41 (50)
268 PRK07764 DNA polymerase III su 39.1 93 0.002 38.4 8.1 72 79-152 120-194 (824)
269 PRK09140 2-dehydro-3-deoxy-6-p 38.7 2.1E+02 0.0045 29.3 9.4 93 51-145 5-99 (206)
270 PRK14959 DNA polymerase III su 38.6 2.3E+02 0.0049 34.1 10.9 72 79-152 119-193 (624)
271 PF01959 DHQS: 3-dehydroquinat 38.4 2.7E+02 0.0058 31.3 10.7 70 80-150 97-168 (354)
272 PRK13566 anthranilate synthase 38.4 71 0.0015 38.8 6.9 80 29-112 522-604 (720)
273 COG0673 MviM Predicted dehydro 38.3 5E+02 0.011 27.3 12.9 104 33-149 3-114 (342)
274 PRK13111 trpA tryptophan synth 38.2 2.7E+02 0.0059 29.5 10.5 101 32-136 116-229 (258)
275 PRK09016 quinolinate phosphori 38.1 3.1E+02 0.0066 30.0 10.9 67 59-132 211-277 (296)
276 KOG3648 Golgi apparatus protei 38.1 29 0.00062 41.2 3.4 13 636-648 280-292 (1179)
277 cd03818 GT1_ExpC_like This fam 37.8 3.1E+02 0.0068 29.7 11.3 75 67-152 292-366 (396)
278 TIGR01163 rpe ribulose-phospha 37.7 1E+02 0.0022 30.4 6.9 67 65-135 115-193 (210)
279 cd00429 RPE Ribulose-5-phospha 37.6 1.1E+02 0.0024 30.0 7.2 55 80-135 128-194 (211)
280 COG4977 Transcriptional regula 37.5 38 0.00082 37.3 4.1 40 249-289 224-266 (328)
281 PRK04302 triosephosphate isome 37.5 4E+02 0.0087 27.1 11.4 100 32-135 84-202 (223)
282 PLN02781 Probable caffeoyl-CoA 37.4 1.6E+02 0.0036 30.3 8.6 59 30-88 90-153 (234)
283 PRK09978 DNA-binding transcrip 37.0 30 0.00065 37.1 3.2 32 257-290 157-188 (274)
284 COG0626 MetC Cystathionine bet 37.0 2E+02 0.0044 32.5 9.7 122 5-132 70-204 (396)
285 cd03820 GT1_amsD_like This fam 36.8 4.4E+02 0.0095 26.2 12.5 108 33-151 209-318 (348)
286 PF00290 Trp_syntA: Tryptophan 36.8 60 0.0013 34.6 5.3 55 93-147 73-134 (259)
287 PF03328 HpcH_HpaI: HpcH/HpaI 36.6 2.3E+02 0.005 28.7 9.4 84 64-149 8-106 (221)
288 cd08187 BDH Butanol dehydrogen 36.4 2.4E+02 0.0052 31.2 10.2 64 33-101 28-105 (382)
289 PRK03659 glutathione-regulated 36.2 1.8E+02 0.0039 34.4 9.6 94 32-134 422-517 (601)
290 PRK14722 flhF flagellar biosyn 36.2 2.7E+02 0.0058 31.3 10.5 110 11-121 143-262 (374)
291 cd04740 DHOD_1B_like Dihydroor 36.1 4.8E+02 0.01 27.5 12.1 57 95-151 220-282 (296)
292 PLN02935 Bifunctional NADH kin 36.0 2.2E+02 0.0048 33.3 10.0 102 34-154 195-320 (508)
293 TIGR03704 PrmC_rel_meth putati 35.8 3.3E+02 0.0072 28.4 10.6 52 33-87 110-161 (251)
294 PRK06978 nicotinate-nucleotide 35.8 4.4E+02 0.0096 28.8 11.7 90 35-131 178-273 (294)
295 COG0742 N6-adenine-specific me 35.5 70 0.0015 32.6 5.3 54 33-87 66-122 (187)
296 PRK04128 1-(5-phosphoribosyl)- 35.4 3.7E+02 0.0079 27.9 10.7 69 64-134 30-101 (228)
297 PRK00748 1-(5-phosphoribosyl)- 35.1 2.1E+02 0.0045 28.9 8.8 73 63-136 29-104 (233)
298 cd08179 NADPH_BDH NADPH-depend 35.1 2.8E+02 0.0061 30.6 10.4 63 34-101 24-100 (375)
299 PRK07028 bifunctional hexulose 34.8 5.3E+02 0.012 29.0 12.7 71 80-151 132-211 (430)
300 TIGR01305 GMP_reduct_1 guanosi 34.7 1.7E+02 0.0037 32.6 8.5 57 79-135 121-178 (343)
301 PRK05458 guanosine 5'-monophos 34.7 1.3E+02 0.0028 33.2 7.6 65 67-133 100-166 (326)
302 PRK04338 N(2),N(2)-dimethylgua 34.5 2.2E+02 0.0048 31.8 9.6 78 34-118 82-162 (382)
303 cd04731 HisF The cyclase subun 34.5 2.1E+02 0.0045 29.3 8.8 64 68-134 153-222 (243)
304 TIGR00736 nifR3_rel_arch TIM-b 34.5 5E+02 0.011 27.2 11.6 95 37-134 115-219 (231)
305 PRK04180 pyridoxal biosynthesi 34.5 1E+02 0.0022 33.5 6.6 60 93-152 190-256 (293)
306 TIGR00308 TRM1 tRNA(guanine-26 34.4 7.1E+02 0.015 27.9 13.9 91 34-130 70-168 (374)
307 TIGR00735 hisF imidazoleglycer 34.4 2.3E+02 0.0049 29.5 9.1 71 64-135 30-103 (254)
308 PRK05581 ribulose-phosphate 3- 34.2 2E+02 0.0043 28.7 8.4 56 80-135 132-198 (220)
309 PF00249 Myb_DNA-binding: Myb- 34.2 1.1E+02 0.0023 23.6 5.1 42 224-268 3-44 (48)
310 TIGR03572 WbuZ glycosyl amidat 34.0 2.2E+02 0.0048 28.9 8.9 71 63-135 29-103 (232)
311 PRK01033 imidazole glycerol ph 33.7 2.1E+02 0.0045 30.0 8.8 72 63-135 29-103 (258)
312 PF05690 ThiG: Thiazole biosyn 33.7 3.3E+02 0.0072 29.1 9.9 116 32-151 92-225 (247)
313 PRK14953 DNA polymerase III su 33.6 4E+02 0.0087 30.9 11.7 73 80-153 120-194 (486)
314 TIGR00095 RNA methyltransferas 33.4 4.3E+02 0.0093 26.4 10.6 68 35-102 74-144 (189)
315 TIGR00959 ffh signal recogniti 33.3 3.6E+02 0.0078 30.8 11.1 101 32-134 127-246 (428)
316 TIGR00566 trpG_papA glutamine 33.0 59 0.0013 32.3 4.4 73 36-112 2-78 (188)
317 cd03801 GT1_YqgM_like This fam 32.9 5E+02 0.011 25.8 12.0 74 67-151 267-340 (374)
318 PF01381 HTH_3: Helix-turn-hel 32.7 36 0.00079 26.4 2.3 30 252-282 3-32 (55)
319 TIGR00696 wecB_tagA_cpsF bacte 32.7 1.9E+02 0.0041 29.0 7.8 77 31-111 46-130 (177)
320 PF01081 Aldolase: KDPG and KH 32.6 1.2E+02 0.0026 31.0 6.5 81 60-143 13-94 (196)
321 PRK08007 para-aminobenzoate sy 32.5 53 0.0011 32.7 3.9 49 36-86 2-50 (187)
322 TIGR03449 mycothiol_MshA UDP-N 32.4 6.3E+02 0.014 27.1 12.5 107 34-151 253-367 (405)
323 PRK11359 cyclic-di-GMP phospho 32.2 3.8E+02 0.0082 31.8 11.6 97 49-148 683-793 (799)
324 cd04724 Tryptophan_synthase_al 32.1 2.8E+02 0.0061 28.8 9.3 102 32-136 103-216 (242)
325 PRK01033 imidazole glycerol ph 31.9 2.2E+02 0.0048 29.8 8.6 68 66-134 154-225 (258)
326 PRK06559 nicotinate-nucleotide 31.8 5.6E+02 0.012 28.0 11.6 90 35-131 169-265 (290)
327 PLN02716 nicotinate-nucleotide 31.7 4.6E+02 0.01 28.9 11.1 71 61-131 208-286 (308)
328 PRK01231 ppnK inorganic polyph 31.7 3.8E+02 0.0082 29.0 10.5 105 31-154 2-120 (295)
329 PRK02155 ppnK NAD(+)/NADH kina 31.7 3.3E+02 0.0071 29.4 10.0 101 35-154 7-121 (291)
330 cd03825 GT1_wcfI_like This fam 31.6 1.4E+02 0.0031 30.8 7.1 75 34-112 1-82 (365)
331 PF01993 MTD: methylene-5,6,7, 31.6 1.2E+02 0.0026 32.4 6.3 64 72-138 54-117 (276)
332 PRK03708 ppnK inorganic polyph 31.5 2.5E+02 0.0054 30.1 9.0 102 34-154 1-114 (277)
333 PF02581 TMP-TENI: Thiamine mo 31.1 3.1E+02 0.0068 26.9 9.1 69 61-133 100-175 (180)
334 PF04131 NanE: Putative N-acet 31.1 1.2E+02 0.0027 31.1 6.2 69 57-133 45-116 (192)
335 PRK14723 flhF flagellar biosyn 31.0 3.4E+02 0.0073 33.5 10.8 124 14-138 194-334 (767)
336 PRK06895 putative anthranilate 31.0 62 0.0014 32.1 4.1 32 33-64 1-32 (190)
337 PRK04885 ppnK inorganic polyph 30.9 1.2E+02 0.0027 32.3 6.5 56 80-154 36-95 (265)
338 TIGR01302 IMP_dehydrog inosine 30.8 1.8E+02 0.0039 33.2 8.2 63 67-133 227-291 (450)
339 PRK12723 flagellar biosynthesi 30.8 6.1E+02 0.013 28.6 12.2 101 32-134 205-319 (388)
340 TIGR01302 IMP_dehydrog inosine 30.7 3.8E+02 0.0082 30.6 10.8 101 31-135 234-356 (450)
341 PRK14075 pnk inorganic polypho 30.7 3.5E+02 0.0076 28.6 9.8 94 34-154 1-96 (256)
342 cd03115 SRP The signal recogni 30.6 1.3E+02 0.0027 28.9 6.1 54 32-87 27-90 (173)
343 PRK06106 nicotinate-nucleotide 30.5 5E+02 0.011 28.2 11.0 66 60-132 198-263 (281)
344 cd08185 Fe-ADH1 Iron-containin 30.5 2.5E+02 0.0053 31.0 9.1 63 34-101 26-102 (380)
345 COG0159 TrpA Tryptophan syntha 30.5 1.6E+02 0.0036 31.6 7.3 57 95-151 82-145 (265)
346 PHA01976 helix-turn-helix prot 30.4 58 0.0013 26.4 3.2 33 247-280 4-36 (67)
347 cd03802 GT1_AviGT4_like This f 30.3 5.3E+02 0.012 26.3 11.0 73 66-150 234-306 (335)
348 cd03804 GT1_wbaZ_like This fam 30.2 3.9E+02 0.0084 28.0 10.2 103 34-152 222-326 (351)
349 cd01948 EAL EAL domain. This d 30.1 1.9E+02 0.0042 28.4 7.5 89 49-140 137-239 (240)
350 cd05212 NAD_bind_m-THF_DH_Cycl 30.0 1.7E+02 0.0037 28.3 6.7 54 31-91 26-83 (140)
351 PRK07455 keto-hydroxyglutarate 30.0 4.7E+02 0.01 26.2 10.2 85 57-143 14-99 (187)
352 TIGR02082 metH 5-methyltetrahy 30.0 4E+02 0.0086 34.5 11.7 102 34-137 733-847 (1178)
353 PRK10867 signal recognition pa 30.0 5E+02 0.011 29.7 11.5 53 33-87 129-191 (433)
354 PRK03372 ppnK inorganic polyph 29.8 5.2E+02 0.011 28.2 11.2 102 34-154 6-130 (306)
355 cd04726 KGPDC_HPS 3-Keto-L-gul 29.8 1.7E+02 0.0037 28.7 7.0 82 65-148 11-98 (202)
356 PF12844 HTH_19: Helix-turn-he 29.6 47 0.001 26.7 2.5 32 248-280 2-33 (64)
357 PRK06015 keto-hydroxyglutarate 29.6 3.5E+02 0.0076 27.8 9.3 81 62-144 11-91 (201)
358 PRK08072 nicotinate-nucleotide 29.4 6.1E+02 0.013 27.3 11.4 91 35-133 160-258 (277)
359 PRK13789 phosphoribosylamine-- 29.2 7.1E+02 0.015 28.2 12.5 62 32-95 3-84 (426)
360 PRK15490 Vi polysaccharide bio 29.1 6.1E+02 0.013 30.3 12.2 103 33-147 429-533 (578)
361 PF04309 G3P_antiterm: Glycero 29.0 62 0.0013 32.6 3.7 60 67-132 107-166 (175)
362 PRK11036 putative S-adenosyl-L 28.9 4.7E+02 0.01 26.9 10.3 67 33-102 66-136 (255)
363 TIGR01182 eda Entner-Doudoroff 28.8 4.5E+02 0.0098 27.1 10.0 82 59-144 12-95 (204)
364 cd01568 QPRTase_NadC Quinolina 28.7 4.9E+02 0.011 27.7 10.5 93 35-133 153-253 (269)
365 cd04951 GT1_WbdM_like This fam 28.7 4.6E+02 0.0099 27.0 10.3 105 33-151 219-325 (360)
366 PRK03562 glutathione-regulated 28.6 2.9E+02 0.0062 32.9 9.7 93 32-133 422-516 (621)
367 PF12833 HTH_18: Helix-turn-he 28.6 41 0.0009 28.2 2.1 26 264-290 1-26 (81)
368 cd06338 PBP1_ABC_ligand_bindin 28.6 6.3E+02 0.014 26.5 11.4 76 34-113 142-229 (345)
369 PRK00811 spermidine synthase; 28.5 4E+02 0.0088 28.3 10.0 58 31-91 98-162 (283)
370 PRK04457 spermidine synthase; 28.5 6E+02 0.013 26.7 11.2 52 33-87 90-144 (262)
371 PRK08185 hypothetical protein; 28.5 2E+02 0.0043 31.1 7.6 84 63-153 148-242 (283)
372 PF13518 HTH_28: Helix-turn-he 28.4 93 0.002 23.7 3.9 33 250-284 5-37 (52)
373 PRK06543 nicotinate-nucleotide 28.4 7.9E+02 0.017 26.6 13.5 90 35-131 161-261 (281)
374 cd02940 DHPD_FMN Dihydropyrimi 28.3 3.3E+02 0.0072 29.1 9.4 39 95-133 239-279 (299)
375 PF12840 HTH_20: Helix-turn-he 28.3 66 0.0014 26.0 3.2 34 249-283 14-48 (61)
376 PRK10415 tRNA-dihydrouridine s 28.2 4.4E+02 0.0096 28.6 10.4 95 37-133 113-222 (321)
377 TIGR02149 glgA_Coryne glycogen 28.1 7.3E+02 0.016 26.2 11.9 108 33-151 229-351 (388)
378 TIGR01306 GMP_reduct_2 guanosi 28.0 8.5E+02 0.018 26.9 12.4 98 35-135 110-227 (321)
379 TIGR03765 ICE_PFL_4695 integra 27.9 2.8E+02 0.006 26.0 7.4 70 35-112 26-99 (105)
380 cd04949 GT1_gtfA_like This fam 27.9 5.3E+02 0.012 27.2 10.8 55 93-152 291-345 (372)
381 PRK11572 copper homeostasis pr 27.8 3.5E+02 0.0076 28.8 9.1 91 41-133 98-196 (248)
382 COG4122 Predicted O-methyltran 27.6 1.9E+02 0.0042 30.1 7.1 62 29-91 80-144 (219)
383 PF07638 Sigma70_ECF: ECF sigm 27.4 1.1E+02 0.0024 30.2 5.2 45 233-277 126-170 (185)
384 TIGR01425 SRP54_euk signal rec 27.4 5.2E+02 0.011 29.7 11.0 103 32-138 127-250 (429)
385 PRK07765 para-aminobenzoate sy 27.3 90 0.002 31.9 4.7 78 34-112 1-82 (214)
386 cd02809 alpha_hydroxyacid_oxid 27.1 5.9E+02 0.013 27.2 10.9 69 63-134 180-255 (299)
387 PRK09490 metH B12-dependent me 27.0 3.7E+02 0.008 35.0 10.7 101 34-136 752-865 (1229)
388 cd03808 GT1_cap1E_like This fa 26.9 6E+02 0.013 25.4 10.5 52 94-151 277-328 (359)
389 TIGR01859 fruc_bis_ald_ fructo 26.8 2.3E+02 0.0049 30.5 7.7 84 63-153 152-244 (282)
390 TIGR01306 GMP_reduct_2 guanosi 26.7 4.8E+02 0.01 28.8 10.2 56 80-135 109-165 (321)
391 PRK13609 diacylglycerol glucos 26.7 8.2E+02 0.018 26.3 12.9 105 33-151 230-337 (380)
392 cd03785 GT1_MurG MurG is an N- 26.6 7.5E+02 0.016 25.8 13.0 65 80-151 253-323 (350)
393 PRK04296 thymidine kinase; Pro 26.6 56 0.0012 32.5 2.9 80 32-112 29-112 (190)
394 COG1927 Mtd Coenzyme F420-depe 26.5 4.1E+02 0.0089 28.0 9.0 80 55-137 29-117 (277)
395 PF00977 His_biosynth: Histidi 26.5 2.8E+02 0.006 28.5 8.1 70 64-134 147-219 (229)
396 cd00452 KDPG_aldolase KDPG and 26.4 4.5E+02 0.0097 26.1 9.3 69 61-135 102-171 (190)
397 TIGR03061 pip_yhgE_Nterm YhgE/ 26.2 1.5E+02 0.0033 28.5 5.8 52 31-85 41-102 (164)
398 cd08194 Fe-ADH6 Iron-containin 26.2 4.4E+02 0.0096 29.0 10.1 63 34-101 24-99 (375)
399 PRK09860 putative alcohol dehy 26.2 4.4E+02 0.0095 29.3 10.1 63 34-101 32-107 (383)
400 cd03799 GT1_amsK_like This is 26.2 7.1E+02 0.015 25.5 11.1 66 80-151 256-326 (355)
401 cd02801 DUS_like_FMN Dihydrour 26.1 6.7E+02 0.014 25.0 10.8 91 40-132 106-210 (231)
402 cd01573 modD_like ModD; Quinol 26.1 7.2E+02 0.016 26.5 11.3 70 60-134 187-257 (272)
403 COG3010 NanE Putative N-acetyl 26.1 6.1E+02 0.013 26.7 10.2 114 32-149 97-225 (229)
404 PRK13585 1-(5-phosphoribosyl)- 26.0 3.3E+02 0.0072 27.7 8.6 78 65-144 150-237 (241)
405 PRK05670 anthranilate synthase 26.0 89 0.0019 30.9 4.2 48 36-85 2-49 (189)
406 PRK08649 inosine 5-monophospha 25.8 9.5E+02 0.021 26.9 12.6 66 65-134 142-214 (368)
407 cd03798 GT1_wlbH_like This fam 25.8 6.5E+02 0.014 25.2 10.5 53 94-152 292-344 (377)
408 TIGR00417 speE spermidine synt 25.7 4.9E+02 0.011 27.3 9.9 55 33-90 96-156 (270)
409 cd03806 GT1_ALG11_like This fa 25.6 8E+02 0.017 27.3 12.1 107 33-151 273-391 (419)
410 cd08170 GlyDH Glycerol dehydro 25.5 3.4E+02 0.0073 29.5 8.9 76 34-114 23-109 (351)
411 PRK14967 putative methyltransf 25.4 6.1E+02 0.013 25.6 10.2 47 35-86 61-108 (223)
412 PLN02823 spermine synthase 25.4 1.6E+02 0.0035 32.5 6.4 55 33-90 127-187 (336)
413 PRK05637 anthranilate synthase 25.4 1.1E+02 0.0025 31.1 5.0 49 34-85 2-50 (208)
414 PRK02083 imidazole glycerol ph 25.3 3.8E+02 0.0083 27.7 8.9 72 63-135 29-103 (253)
415 PRK07994 DNA polymerase III su 25.3 1.6E+02 0.0035 35.4 6.8 72 79-152 119-193 (647)
416 cd02810 DHOD_DHPD_FMN Dihydroo 25.3 5.1E+02 0.011 27.1 10.0 38 95-132 230-269 (289)
417 PLN02335 anthranilate synthase 25.2 83 0.0018 32.4 3.9 77 33-112 18-97 (222)
418 PRK14024 phosphoribosyl isomer 25.1 7.8E+02 0.017 25.5 11.1 85 63-148 31-120 (241)
419 cd08176 LPO Lactadehyde:propan 24.8 4.6E+02 0.0099 29.0 9.9 63 34-101 29-104 (377)
420 PRK10060 RNase II stability mo 24.7 6.2E+02 0.013 30.1 11.5 98 48-148 545-656 (663)
421 PLN00191 enolase 24.7 4.8E+02 0.011 30.1 10.3 83 65-148 296-380 (457)
422 PRK04128 1-(5-phosphoribosyl)- 24.7 3.2E+02 0.007 28.3 8.2 66 65-134 144-210 (228)
423 PHA02943 hypothetical protein; 24.7 89 0.0019 31.1 3.8 36 248-283 14-51 (165)
424 PRK03378 ppnK inorganic polyph 24.6 2.2E+02 0.0049 30.7 7.2 101 35-154 7-121 (292)
425 TIGR00737 nifR3_yhdG putative 24.4 6.7E+02 0.015 27.0 10.9 94 38-133 112-220 (319)
426 PF01022 HTH_5: Bacterial regu 24.4 1E+02 0.0022 23.7 3.4 34 249-283 6-39 (47)
427 PRK02290 3-dehydroquinate synt 24.3 3.5E+02 0.0077 30.2 8.7 69 80-150 89-159 (344)
428 PRK05286 dihydroorotate dehydr 24.3 5.5E+02 0.012 28.2 10.3 57 95-151 276-341 (344)
429 cd08181 PPD-like 1,3-propanedi 24.3 6E+02 0.013 27.8 10.6 63 34-101 26-102 (357)
430 PF00497 SBP_bac_3: Bacterial 24.2 2.4E+02 0.0052 26.8 6.8 52 32-87 109-160 (225)
431 PRK13143 hisH imidazole glycer 24.2 1.5E+02 0.0032 29.8 5.5 44 34-85 1-44 (200)
432 PF13941 MutL: MutL protein 24.2 1.2E+03 0.025 27.2 13.6 121 32-154 75-211 (457)
433 PF13443 HTH_26: Cro/C1-type H 24.2 58 0.0013 26.1 2.1 32 249-281 1-32 (63)
434 cd00532 MGS-like MGS-like doma 24.1 1.7E+02 0.0036 26.7 5.3 22 40-61 8-29 (112)
435 PF11072 DUF2859: Protein of u 24.1 3.5E+02 0.0076 26.6 7.7 70 34-111 63-136 (142)
436 PRK14024 phosphoribosyl isomer 24.1 4.4E+02 0.0095 27.3 9.0 78 67-145 149-238 (241)
437 PRK12727 flagellar biosynthesi 23.8 6.2E+02 0.013 30.2 10.9 75 12-87 357-436 (559)
438 PF03102 NeuB: NeuB family; I 23.8 2.8E+02 0.0061 29.2 7.6 93 46-143 58-160 (241)
439 smart00052 EAL Putative diguan 23.6 3.8E+02 0.0083 26.3 8.3 89 49-140 138-240 (241)
440 PRK14951 DNA polymerase III su 23.6 2.5E+02 0.0054 33.7 7.9 72 79-152 124-198 (618)
441 PLN02476 O-methyltransferase 23.5 3.3E+02 0.0072 29.4 8.2 59 30-88 140-203 (278)
442 PRK13695 putative NTPase; Prov 23.5 4.5E+02 0.0098 25.2 8.6 71 78-149 95-171 (174)
443 TIGR02855 spore_yabG sporulati 23.5 7.1E+02 0.015 27.2 10.4 55 30-86 101-160 (283)
444 PLN02274 inosine-5'-monophosph 23.5 3.1E+02 0.0067 32.0 8.5 54 80-134 261-316 (505)
445 PRK06843 inosine 5-monophospha 23.4 3.2E+02 0.007 31.1 8.4 53 80-133 166-220 (404)
446 PRK03522 rumB 23S rRNA methylu 23.4 4.1E+02 0.0089 28.5 9.0 77 33-115 195-275 (315)
447 PRK09940 transcriptional regul 23.3 92 0.002 33.1 3.9 31 257-289 149-179 (253)
448 PRK11923 algU RNA polymerase s 23.2 1.6E+02 0.0034 28.7 5.3 43 226-271 125-167 (193)
449 CHL00101 trpG anthranilate syn 23.2 1.1E+02 0.0023 30.6 4.2 48 36-85 2-49 (190)
450 PF13936 HTH_38: Helix-turn-he 22.9 1.1E+02 0.0024 23.5 3.4 30 252-282 14-43 (44)
451 PRK06552 keto-hydroxyglutarate 22.8 7.9E+02 0.017 25.3 10.5 93 51-145 8-104 (213)
452 PRK06806 fructose-bisphosphate 22.7 3.7E+02 0.008 28.9 8.4 71 62-134 151-229 (281)
453 COG0461 PyrE Orotate phosphori 22.7 2.1E+02 0.0045 29.6 6.2 65 30-118 109-175 (201)
454 COG2247 LytB Putative cell wal 22.7 8.7E+02 0.019 27.1 11.1 53 88-140 105-166 (337)
455 PF01729 QRPTase_C: Quinolinat 22.7 2.1E+02 0.0046 28.5 6.1 55 94-149 66-121 (169)
456 PF07374 DUF1492: Protein of u 22.5 1.4E+02 0.003 27.0 4.4 46 232-279 47-92 (100)
457 COG2109 BtuR ATP:corrinoid ade 22.5 2.6E+02 0.0056 28.9 6.7 53 69-123 114-171 (198)
458 cd06346 PBP1_ABC_ligand_bindin 22.4 8.9E+02 0.019 25.2 12.8 79 35-117 139-229 (312)
459 PRK14960 DNA polymerase III su 22.3 2.5E+02 0.0054 34.2 7.5 73 79-153 118-193 (702)
460 PRK14994 SAM-dependent 16S rib 22.2 2.6E+02 0.0056 30.2 7.1 89 33-124 37-131 (287)
461 PF13412 HTH_24: Winged helix- 22.2 1.6E+02 0.0035 22.4 4.1 35 248-283 6-41 (48)
462 cd00405 PRAI Phosphoribosylant 22.2 4.1E+02 0.0089 26.5 8.2 89 40-132 82-178 (203)
463 PRK05567 inosine 5'-monophosph 22.2 3.3E+02 0.0072 31.3 8.4 64 67-133 230-295 (486)
464 PLN02589 caffeoyl-CoA O-methyl 22.1 4.3E+02 0.0093 27.9 8.6 59 30-88 101-165 (247)
465 cd03812 GT1_CapH_like This fam 21.9 8.8E+02 0.019 24.9 11.0 107 33-152 223-331 (358)
466 TIGR02095 glgA glycogen/starch 21.9 6.4E+02 0.014 28.3 10.5 108 34-152 321-437 (473)
467 PRK00230 orotidine 5'-phosphat 21.8 3.2E+02 0.007 28.2 7.5 74 65-141 13-93 (230)
468 PRK10742 putative methyltransf 21.8 4.1E+02 0.0089 28.4 8.3 58 32-92 109-177 (250)
469 PRK02649 ppnK inorganic polyph 21.8 5.3E+02 0.011 28.1 9.4 101 35-154 3-126 (305)
470 cd01572 QPRTase Quinolinate ph 21.8 9.9E+02 0.021 25.5 11.7 112 1-132 131-251 (268)
471 PRK00654 glgA glycogen synthas 21.7 6.6E+02 0.014 28.3 10.6 108 33-151 311-427 (466)
472 PF01564 Spermine_synth: Sperm 21.7 1.4E+02 0.003 31.3 4.8 59 31-93 98-164 (246)
473 TIGR00479 rumA 23S rRNA (uraci 21.7 8.4E+02 0.018 27.3 11.3 78 34-113 315-395 (431)
474 PRK00771 signal recognition pa 21.6 8.5E+02 0.018 28.0 11.4 86 32-118 122-219 (437)
475 COG3836 HpcH 2,4-dihydroxyhept 21.5 7.2E+02 0.016 26.7 9.9 96 48-146 7-108 (255)
476 PRK04452 acetyl-CoA decarbonyl 21.5 1.1E+03 0.024 26.0 13.6 111 31-149 47-171 (319)
477 PRK14076 pnk inorganic polypho 21.5 2.9E+02 0.0062 32.6 7.9 104 33-155 290-407 (569)
478 cd03807 GT1_WbnK_like This fam 21.4 8.4E+02 0.018 24.5 11.1 64 80-152 269-332 (365)
479 TIGR00381 cdhD CO dehydrogenas 21.4 1.2E+03 0.027 26.5 13.7 107 31-148 111-235 (389)
480 cd08186 Fe-ADH8 Iron-containin 21.3 5.4E+02 0.012 28.5 9.6 63 34-101 27-103 (383)
481 PRK13849 putative crown gall t 21.3 2.4E+02 0.0051 29.2 6.4 13 32-44 29-41 (231)
482 PF01978 TrmB: Sugar-specific 21.2 60 0.0013 26.7 1.7 44 239-283 3-46 (68)
483 cd04739 DHOD_like Dihydroorota 21.2 1.1E+03 0.023 25.7 12.0 58 95-152 226-290 (325)
484 cd03316 MR_like Mandelate race 21.2 4.9E+02 0.011 28.1 9.1 72 65-138 201-273 (357)
485 PRK02228 V-type ATP synthase s 21.2 5.4E+02 0.012 23.3 7.9 66 32-101 18-89 (100)
486 cd04723 HisA_HisF Phosphoribos 21.1 6.4E+02 0.014 26.0 9.5 75 63-138 34-110 (233)
487 cd08551 Fe-ADH iron-containing 21.1 5.2E+02 0.011 28.3 9.3 63 34-101 24-99 (370)
488 PRK00025 lpxB lipid-A-disaccha 21.1 1E+03 0.022 25.4 12.1 64 80-151 262-340 (380)
489 PRK11829 biofilm formation reg 21.1 6.8E+02 0.015 29.3 10.9 97 47-146 542-652 (660)
490 KOG0922 DEAH-box RNA helicase 21.0 6.6E+02 0.014 30.6 10.4 105 2-127 110-216 (674)
491 TIGR01579 MiaB-like-C MiaB-lik 20.9 6E+02 0.013 28.3 9.9 92 44-149 11-107 (414)
492 cd08171 GlyDH-like2 Glycerol d 20.9 4.6E+02 0.01 28.5 8.8 76 34-114 23-110 (345)
493 PF05582 Peptidase_U57: YabG p 20.9 7.2E+02 0.016 27.2 9.9 57 28-86 100-161 (287)
494 TIGR00078 nadC nicotinate-nucl 20.9 1E+03 0.022 25.3 11.4 91 35-134 150-249 (265)
495 PRK13586 1-(5-phosphoribosyl)- 20.8 4.8E+02 0.01 27.1 8.6 68 65-134 147-217 (232)
496 TIGR02858 spore_III_AA stage I 20.8 3E+02 0.0066 29.3 7.2 75 11-87 117-202 (270)
497 cd08182 HEPD Hydroxyethylphosp 20.8 4.7E+02 0.01 28.6 9.0 63 34-101 24-96 (367)
498 cd02803 OYE_like_FMN_family Ol 20.7 6.4E+02 0.014 26.8 9.8 41 93-133 268-308 (327)
499 PRK07428 nicotinate-nucleotide 20.7 3.2E+02 0.0069 29.6 7.4 40 109-149 198-237 (288)
500 COG2022 ThiG Uncharacterized e 20.6 4.7E+02 0.01 28.0 8.3 116 32-151 99-232 (262)
No 1
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.97 E-value=3e-31 Score=291.16 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC--LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~--gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
+++||||||++.+|++|+.++.|. +++ |.+|.||.+|++.+++.. |||||+||+||+|||+++++.+++ .+++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 479999999999999999999986 565 469999999999999887 999999999999999999999974 58899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+||+|++++|+++++|+++|+.|||+||++.++|.+++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887653
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=3.7e-20 Score=188.44 Aligned_cols=118 Identities=31% Similarity=0.509 Sum_probs=111.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPVII 111 (668)
++|||||||+.+++.|+..|+..||.|..+.++.+|++.+... ||+||+|++||++||+++|++||. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999998754 999999999999999999999984 46789999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+|+.++.+....+++.||+|||+|||++.||.+.++.++++..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998764
No 3
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=1e-18 Score=174.55 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
++|||||||+.+.+.-+.+++.. +|.+ .+|.+.++|..++++.+ |||||+|+.||+.+|++|+..++. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999876 6764 58999999999999887 899999999999999999999984 4678899
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+-+|.+.+.+|++.||.|||+|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877664
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.80 E-value=1e-18 Score=175.42 Aligned_cols=168 Identities=30% Similarity=0.348 Sum_probs=138.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g-y~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~IPVI 110 (668)
++|+||||++.+|.+|+.+|.... ++| ..+.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998864 664 57888999999987766 99999999999999999999997 56889999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----cCCc-ccccc-cCCCchhHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SGSL-EETDH-HKRGSDEIEYAS 183 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~-----~~~l-e~~d~-~klt~~Eie~ls 183 (668)
++|.+++..++.++++.||++|++|..+.++|.++++.+..+.......... .... ..... ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998665332221110 0000 11111 368999999999
Q ss_pred hhccCCcchhhhhhhccccc
Q 005938 184 SVNEGTEGTFKAQRKRISAK 203 (668)
Q Consensus 184 sv~eg~e~~vk~~~k~I~~k 203 (668)
.+.+|..++..+.+..++.+
T Consensus 159 lla~G~snkeIA~~L~iS~~ 178 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEK 178 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHh
Confidence 99999988888777777654
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=171.65 Aligned_cols=167 Identities=23% Similarity=0.302 Sum_probs=136.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~IPVI 110 (668)
...-|.|||||..+|+.+..+|+..||.+.++.++.+.|...... .|-++|+|++||+|+|+|+..+|+ ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 345699999999999999999999999999999999999985443 489999999999999999999996 45789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCc
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~le~~d~~klt~~Eie~lssv~eg~e 190 (668)
|+|++.|.....+|++.||.|||.||++..+|..+++++++............ .........++.+|++++..+..|.-
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-~~~~~~l~tLT~RERqVl~~vV~G~~ 159 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-AAIRARLATLTPRERQVLDLVVRGLM 159 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999887643222211110 00112235678899999999988877
Q ss_pred chhhhhhhccc
Q 005938 191 GTFKAQRKRIS 201 (668)
Q Consensus 191 ~~vk~~~k~I~ 201 (668)
++.++....|+
T Consensus 160 NKqIA~dLgiS 170 (202)
T COG4566 160 NKQIAFDLGIS 170 (202)
T ss_pred cHHHHHHcCCc
Confidence 66665555554
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.77 E-value=3.8e-18 Score=188.35 Aligned_cols=119 Identities=41% Similarity=0.628 Sum_probs=112.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~IPVIIL 112 (668)
.+|||||||+.+|..+..+|+..||.|.++.++.+|++.+.... ||+||+|+.||++||++++++|+ ..+++|||++
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 46999999999999999999999999999999999999999874 99999999999999999999997 4589999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
|++.+.+.+.+|++.||.|||.|||+.++|..++++++..+.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.75 E-value=2.8e-17 Score=143.91 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=104.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 005938 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILS 113 (668)
||||||++..++.++..|+..++ .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999998899 9999999999999998876 999999999999999999999974 4689999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq 147 (668)
...+.....++++.|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 8
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.75 E-value=1.4e-16 Score=159.17 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=110.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~-gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~ 106 (668)
+|+.++||||||++.++..+..+|... ++ .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 366799999999999999999999864 67 4678999999999998765 999999999999999999999975 467
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++||++|++.+.+.+.++++.||.+||.||++.++|..+++++...+
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999887654
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-15 Score=136.69 Aligned_cols=119 Identities=38% Similarity=0.585 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~-EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPV 109 (668)
.+.+||||||++..+..++.+|...++.|..+.++. +|++.++... .||+||+|+.||++||++++++++.. ..+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 467999999999999999999999999999999995 9999998761 39999999999999999999999865 67889
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eE-L~~iLq~Vlr 151 (668)
|++|++.+.....++++.|+++|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 99999998887788899999999999977666 7777775543
No 10
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.68 E-value=6.9e-16 Score=181.86 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=130.3
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~e~------------fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~ 61 (668)
|+|++++++.|||. +.|.++++.+..... ...+++||||||++..+..++.+|...++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 58999999999992 566666655543110 11357999999999999999999998899999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHH
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~e 140 (668)
.+.++.+|++.+... ..||+||+|+.||++||++++++|+. .+.+|||++|++.+.....+++..|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 24899999999999999999999974 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005938 141 ELKNIWQHVVRK 152 (668)
Q Consensus 141 EL~~iLq~Vlrk 152 (668)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 11
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.67 E-value=9.7e-16 Score=180.10 Aligned_cols=117 Identities=28% Similarity=0.420 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-----~~I 107 (668)
+++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+|||++++++|+.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 479999999999999999999999999999999999999998765 9999999999999999999999742 568
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|||++|+..+.+...++++.|+++||.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987764
No 12
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.67 E-value=1.1e-15 Score=150.83 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=134.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy-~-V~tasng~EALelLre~~~~PDLVIlDI~MPd---mDG~ELLe~Ir~-~~~ 106 (668)
+++||||||++..+..++.+|...++ . +..+.++.++++.+.... ||+||+|+.||+ ++|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 48999999999999999999987544 3 668999999999987655 999999999999 599999999974 578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccccccc---CCcccccccCCCchhHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS---GSLEETDHHKRGSDEIEYAS 183 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~---~~le~~d~~klt~~Eie~ls 183 (668)
+|||++|.+.+.....++++.||++||.||.+.++|..+++.+..+........... ..........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999998876543221110000 00000112358999999999
Q ss_pred hhccCCcchhhhhhhccccc
Q 005938 184 SVNEGTEGTFKAQRKRISAK 203 (668)
Q Consensus 184 sv~eg~e~~vk~~~k~I~~k 203 (668)
.+.+|......+.+..++.+
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~ 180 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIK 180 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHH
Confidence 99999877777766666543
No 13
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.67 E-value=1.1e-15 Score=177.93 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=126.1
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccCCC-------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ-------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~e~-------------fP~girVLIVDDDp~ire~Lk~lL~~~gy~V 60 (668)
|+|++++|+.|||. +.|++|++.+..+.. ...+++||||||++..+..++.+|...+|.|
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 58999999999992 667777665543211 1135899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-CcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~-IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
..+.++.+|++.+.... ||+||+|+.||++||++++++|+.. .. .|||++|+.... ...+++..|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 99999999999998654 9999999999999999999999753 34 488889887654 46789999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 005938 137 IREEELKNIWQHVVRK 152 (668)
Q Consensus 137 is~eEL~~iLq~Vlrk 152 (668)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999887654
No 14
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.66 E-value=1.2e-15 Score=180.43 Aligned_cols=150 Identities=27% Similarity=0.350 Sum_probs=130.0
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~e~------------fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~ 61 (668)
|+|++++++.|||. +.|.++++.+.+... ...+.+||||||++..+..++.+|...+|.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 58999999999992 566777665543211 11245899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---CcEEEEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~---IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
.+.++.+|++.+.... ||+||+|+.||++||+++++.|+.. +. +|||++|++.+.+...+++..|+++||.||+
T Consensus 731 ~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999998754 9999999999999999999999753 23 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005938 138 REEELKNIWQHVVRK 152 (668)
Q Consensus 138 s~eEL~~iLq~Vlrk 152 (668)
+.++|..++.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999887653
No 15
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=6.1e-16 Score=164.58 Aligned_cols=121 Identities=36% Similarity=0.510 Sum_probs=110.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c---CC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E---MD 106 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~---~~ 106 (668)
...++||+|||++..+..+..+|+..+|.|.+|.++++|+++...+. +|+||+|++||+|||+|+|.+|+. . ..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 45689999999999999999999999999999999999999998876 999999999999999999999975 3 46
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|||++|++.|.+...+|+..||+|||.||+++.+|...+...+..+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998886544333
No 16
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.65 E-value=3.7e-15 Score=145.29 Aligned_cols=118 Identities=28% Similarity=0.383 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999998999999999999999887654 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998877653
No 17
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.65 E-value=2.8e-15 Score=179.13 Aligned_cols=120 Identities=30% Similarity=0.478 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|++||+|||+++++.|++ .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999999999999999999999999999998765 999999999999999999999985 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|+..+.+...++++.|+++||.||++.++|..++.++.+..
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876543
No 18
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.64 E-value=2.8e-15 Score=181.90 Aligned_cols=149 Identities=24% Similarity=0.450 Sum_probs=129.5
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccC---------------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVP---------------DQFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~---------------e~fP~girVLIVDDDp~ire~Lk~lL~~~gy 58 (668)
|+|++++++.|||. +.|.+++..+... ...+..++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 58999999999992 5566665544321 1123457999999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 59 ~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+. .+.+|||++|+..+.....++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999997655 999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005938 138 REEELKNIWQHVVR 151 (668)
Q Consensus 138 s~eEL~~iLq~Vlr 151 (668)
+.++|...++++..
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=1e-14 Score=140.69 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
|+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999998999999999999999887655 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 20
>PLN03029 type-a response regulator protein; Provisional
Probab=99.64 E-value=4.4e-15 Score=149.74 Aligned_cols=122 Identities=28% Similarity=0.569 Sum_probs=109.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCC------------------CceEEEEeCCCCCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG------------------CFDVVLSDVHMPDMD 93 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~------------------~PDLVIlDI~MPdmD 93 (668)
..++||||||++..+..+..+|.+.+|.|.++.++.+|++.+..... .+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 45899999999999999999999999999999999999999865421 267999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 94 G~ELLe~Ir~~---~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+++++.|+.. .++|||++|+..+.....++++.|+++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 5789999999999999999999999999999999999988888876654
No 21
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=6.4e-15 Score=145.87 Aligned_cols=118 Identities=20% Similarity=0.419 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..+...|+..++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999998999999999999999987765 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998887764
No 22
>PRK09483 response regulator; Provisional
Probab=99.64 E-value=9e-15 Score=141.49 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=129.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.++||||||++..+..++.+|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 368999999999999999999874 77765 7899999999988765 999999999999999999999964 577999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccc------cccCCcccccccCCCchhHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH------ENSGSLEETDHHKRGSDEIEYAS 183 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~------e~~~~le~~d~~klt~~Eie~ls 183 (668)
|++|...+.....+++..|+++|+.||++.++|..+++.+.++........ .............++.+|.+++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 158 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIML 158 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHH
Confidence 999999999999999999999999999999999999998876543221110 00000111223457889999998
Q ss_pred hhccCCcchhhhhhh
Q 005938 184 SVNEGTEGTFKAQRK 198 (668)
Q Consensus 184 sv~eg~e~~vk~~~k 198 (668)
.+..|......+...
T Consensus 159 ~~~~G~~~~~Ia~~l 173 (217)
T PRK09483 159 MITKGQKVNEISEQL 173 (217)
T ss_pred HHHCCCCHHHHHHHh
Confidence 887776554443333
No 23
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.64 E-value=4.1e-15 Score=174.61 Aligned_cols=118 Identities=31% Similarity=0.505 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IPV 109 (668)
.++||||||++..+..++.+|.+.++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. .+++||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 478999999999999999999999999999999999999998765 999999999999999999999984 357999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++|++.+.+...++++.|+++||.||++.++|..++.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999887654
No 24
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.63 E-value=7.8e-15 Score=143.13 Aligned_cols=117 Identities=28% Similarity=0.414 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
|+||||||++..+..+...|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999987665 999999999999999999999975 468999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888765
No 25
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1.1e-14 Score=140.55 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999887654 999999999999999999999975 468999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|...+.+...+++..||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998887653
No 26
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-15 Score=158.61 Aligned_cols=115 Identities=30% Similarity=0.512 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
++|+|||||..+...|..+|.+.+..+.+|+...+||+.+...+ ||||++||.||+|+|+|++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999988999999999999999887 999999999999999999999984 578999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|+++++ +..++...+.|||.||+..+.|.+++.++.+.
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 998755 77788888999999999999999999988744
No 27
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.62 E-value=1.4e-14 Score=140.93 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 68999999999999999999998999999999999999887654 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.....++++.||+|||.||++.++|...+..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998887653
No 28
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.62 E-value=1.5e-14 Score=141.58 Aligned_cols=117 Identities=21% Similarity=0.475 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIIL 112 (668)
|+||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999753 68999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887654
No 29
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.61 E-value=2.4e-14 Score=137.19 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=123.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
|+||||||++..+..++..|...++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999988899886 6999999999988655 999999999999999999999974 46789999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccccc---ccCCcccccccCCCchhHHHHhhhccC
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e---~~~~le~~d~~klt~~Eie~lssv~eg 188 (668)
+++..+.....+++..||++||.||++.++|..+++.++++......... ............++.+|.+++..+..|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998765322111000 000001111234677888888877766
Q ss_pred Cc
Q 005938 189 TE 190 (668)
Q Consensus 189 ~e 190 (668)
..
T Consensus 159 ~~ 160 (204)
T PRK09958 159 KD 160 (204)
T ss_pred CC
Confidence 53
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.60 E-value=2.6e-14 Score=138.62 Aligned_cols=117 Identities=26% Similarity=0.482 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887654
No 31
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.60 E-value=2.6e-14 Score=137.95 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPV 109 (668)
..+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 368999999999999999999988999999999999999987765 9999999999999999999999743 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++|+..+.....++++.||++||.||++.++|...+..++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888765
No 32
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-14 Score=159.23 Aligned_cols=121 Identities=35% Similarity=0.517 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IP 108 (668)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+.+ ||+||+|+.||++||+++|+++|. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 5689999999999999999999999999999999999999998875 999999999999999999999974 35799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
||++++.++.....+|++.|+.|||.||+...+|...+...+++..
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999988888777654
No 33
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.60 E-value=3.1e-14 Score=139.56 Aligned_cols=120 Identities=38% Similarity=0.598 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
..++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3579999999999999999999988999999999999999887655 99999999999999999999998667899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|++.+.....++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998877653
No 34
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.60 E-value=2.8e-14 Score=139.21 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..+...|...++.+..+.++.++++.+.. . ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~--~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-S--IDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc-C--CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998753 3 9999999999999999999999865559999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998887653
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=3e-14 Score=141.08 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999987665 9999999999999999999999876678999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.....++++.||++||.||++.++|...+..++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9988888889999999999999999999999998877653
No 36
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.60 E-value=2.9e-14 Score=143.43 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~-gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
++||||||++.++..++.+|... ++. +..+.++.++++.+......||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999863 565 45789999999988642234999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|+..+...+.+++..||.+||.||++.++|..++.++...
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876554
No 37
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.59 E-value=3.6e-14 Score=139.04 Aligned_cols=117 Identities=29% Similarity=0.485 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
.+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 68999999999999999999988999999999999999887654 9999999999999999999999753 578999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888765
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.59 E-value=3.5e-14 Score=141.47 Aligned_cols=116 Identities=24% Similarity=0.439 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa 114 (668)
+||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999998999999999999999887655 99999999999999999999998767899999998
Q ss_pred c-CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 115 D-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 115 ~-sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
. .+.....++++.||++||.||++.++|...++.++++
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 5 4666778999999999999999999999999887765
No 39
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.59 E-value=3.2e-14 Score=135.58 Aligned_cols=151 Identities=22% Similarity=0.284 Sum_probs=119.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~-gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
++||||||++..+..++..|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999754 554 568999999999987654 99999999999999999999986 3689999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCc
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~le~~d~~klt~~Eie~lssv~eg~e 190 (668)
++...+.+...++++.||++|+.||++.++|..+++.++++.......... .........++.+|.+++..+.+|..
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~ 154 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMA 154 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999988653211111100 00011123467788888887777643
No 40
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=7.3e-14 Score=136.39 Aligned_cols=117 Identities=27% Similarity=0.412 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM 111 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~-~~IPVII 111 (668)
+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999887765 999999999998 5899999999753 6799999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887654
No 41
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.58 E-value=6.2e-14 Score=138.50 Aligned_cols=118 Identities=29% Similarity=0.491 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVII 111 (668)
..+||||||++..+..++..|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999887655 9999999999999999999999753 6899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+++..+.....++++.||++||.||++.++|...++.++++
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988765
No 42
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.57 E-value=5.9e-14 Score=135.93 Aligned_cols=117 Identities=29% Similarity=0.435 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIIL 112 (668)
++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+.+|+++++.++.. +.+|+|++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 68999999999999999999988999999999999999887654 9999999999999999999999754 78999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 9999998899999999999999999999999999877654
No 43
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.56 E-value=6.7e-14 Score=138.94 Aligned_cols=115 Identities=27% Similarity=0.437 Sum_probs=99.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g-y~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
++|+||||++..+..|+.+|...+ +. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 799999999999999999998876 33 457899999999888655 99999999999999999999986444456888
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|++. +++.++++.||.+||.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88765 4678999999999999999999999999988654
No 44
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.56 E-value=1.6e-14 Score=154.84 Aligned_cols=119 Identities=22% Similarity=0.433 Sum_probs=107.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~I 107 (668)
....+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.+++ .+.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 4568999999999999999999987 467778999999999877655 999999999999999999999974 2689
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|||++|++.+++++.+|++.||+|||.||++.++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888765543
No 45
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.55 E-value=1.9e-13 Score=131.43 Aligned_cols=116 Identities=29% Similarity=0.519 Sum_probs=107.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa 114 (668)
||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999988999999999999999887655 999999999999999999999974 57899999999
Q ss_pred cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 115 ~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998887654
No 46
>PRK14084 two-component response regulator; Provisional
Probab=99.55 E-value=1.1e-13 Score=138.65 Aligned_cols=116 Identities=19% Similarity=0.385 Sum_probs=101.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g-y-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVI 110 (668)
|+||||||++..+..++.+|...+ + .+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998754 4 5678999999999988654 9999999999999999999999754 456788
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|++.+ ++.++++.||.+||.||++.++|..+++++.+..
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8887654 5779999999999999999999999999887543
No 47
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.55 E-value=2.4e-13 Score=130.05 Aligned_cols=157 Identities=18% Similarity=0.282 Sum_probs=121.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
..+||||||++..+..++..|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57765 6889999999887654 999999999999999999999975 467999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccc-c---ccC-CcccccccCCCchhHHHHhh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-E---NSG-SLEETDHHKRGSDEIEYASS 184 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~-e---~~~-~le~~d~~klt~~Eie~lss 184 (668)
|++|...+.....+++..|+++|+.||++.++|..+++.++++........ . ... .........++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988876532111100 0 000 00011223467777777777
Q ss_pred hccCCcc
Q 005938 185 VNEGTEG 191 (668)
Q Consensus 185 v~eg~e~ 191 (668)
+.++...
T Consensus 161 l~~g~s~ 167 (210)
T PRK09935 161 LVSGLSN 167 (210)
T ss_pred HHcCCCH
Confidence 6666433
No 48
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.53 E-value=8.7e-14 Score=139.78 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=120.0
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHHcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCcEEEEeccCCH
Q 005938 46 LRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (668)
Q Consensus 46 re~Lk~lL~~---~gy~V~tasng~EALelLre~~~~PDLVI---lDI~MPdmDG~ELLe~Ir-~~~~IPVIILSa~sd~ 118 (668)
|.+++.+|.. .++.|..+.+++++++.++... ||+|| +|+.||++||++++++|+ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 6788888865 2566779999999999887654 89998 688999999999999996 4688999999998877
Q ss_pred HHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCcchhhhhh
Q 005938 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (668)
Q Consensus 119 e~a~kAl-~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~le~~d~~klt~~Eie~lssv~eg~e~~vk~~~ 197 (668)
..+.+++ +.||.+||.||.+.++|..+++.++++............ .......++.+|.+++..+.+|..++..+.+
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7676766 799999999999999999999999876533221111000 0011345899999999999999888777777
Q ss_pred hccccc
Q 005938 198 KRISAK 203 (668)
Q Consensus 198 k~I~~k 203 (668)
..++.+
T Consensus 159 L~iS~~ 164 (207)
T PRK11475 159 LERNIK 164 (207)
T ss_pred HCCCHH
Confidence 666543
No 49
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-14 Score=165.88 Aligned_cols=120 Identities=29% Similarity=0.490 Sum_probs=110.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~--~~I 107 (668)
+-.+.|||||||++..++..+.+|...|.+++.+.++.+|++++.. .+.||+||+|++||.|||+|+.++||+. ..+
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~ 741 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHL 741 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCC
Confidence 4568999999999999999999999999999999999999999972 3459999999999999999999999743 589
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
|||.|||+.+.+...+|++.|.++||.||+..+.|..++++++
T Consensus 742 pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888765
No 50
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.52 E-value=2.7e-13 Score=137.70 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C--CC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~--~I 107 (668)
.++||||||++..+..+..+|... ++.+ ..+.++.++++.+.... ||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 4454 47999999999998765 9999999999999999999999743 2 37
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|||++|+..+.....++++.|+++||.||++.++|...+++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 51
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.52 E-value=8.6e-13 Score=127.22 Aligned_cols=118 Identities=28% Similarity=0.503 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
|+|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999998887654 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+...+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887654
No 52
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.51 E-value=1.3e-13 Score=131.92 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILS 113 (668)
..||||||..++..|...++..||.|.+|.+.+|||..++... |.-.++|++|.+.+|+++++.|++ ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999999776 999999999999999999999974 5789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~ 148 (668)
+|.+...+.+|++.||++||.||-+.+++..++.+
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999999877653
No 53
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.51 E-value=1.3e-13 Score=139.32 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=123.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-HHHh-ccCCCc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIG-LEMDLP 108 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELL-e~Ir-~~~~IP 108 (668)
....+|++|||+|..+.+|+.+|+...-.+..+.++.++++.+. . |||||+|+.||+++|++++ +.|+ ..+.++
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~--~--~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~ 83 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS--S--GSIILLDMMEADKKLIHYWQDTLSRKNNNIK 83 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC--C--CCEEEEECCCCCccHHHHHHHHHHHhCCCCc
Confidence 44567999999999999999999864334567889999988643 2 8999999999999999997 5566 457899
Q ss_pred EEEEeccCCHHHHHHHHHc--CCcEEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccC--CcccccccCCCchhH
Q 005938 109 VIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSG--SLEETDHHKRGSDEI 179 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~--GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e-----~~~--~le~~d~~klt~~Ei 179 (668)
||++|+.++. ...++.. ||.+||.|+.+.++|.++++.+.++......... ... .........++.+|.
T Consensus 84 vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~ 161 (216)
T PRK10100 84 ILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREK 161 (216)
T ss_pred EEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHH
Confidence 9999998773 4566664 9999999999999999999998876432211110 000 000011234788999
Q ss_pred HHHhhhccCCcchhhhhhhcccc
Q 005938 180 EYASSVNEGTEGTFKAQRKRISA 202 (668)
Q Consensus 180 e~lssv~eg~e~~vk~~~k~I~~ 202 (668)
+++..+..|......+....++.
T Consensus 162 ~Vl~l~~~G~s~~eIA~~L~iS~ 184 (216)
T PRK10100 162 EILNKLRIGASNNEIARSLFISE 184 (216)
T ss_pred HHHHHHHcCCCHHHHHHHhCCCH
Confidence 99999999877766665555443
No 54
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.51 E-value=3.3e-13 Score=135.01 Aligned_cols=160 Identities=12% Similarity=-0.004 Sum_probs=125.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHHHHHHHh-ccCCC
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIG-LEMDL 107 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy---~V~tasng~EALelLre~~~~PDLVIlDI~--MPdmDG~ELLe~Ir-~~~~I 107 (668)
|.|+||||++.++.+++.+|+..++ .|..+.++.+++..+.... ||+||+|+. |++.+|.+++++|+ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 4568999999999887654 999999966 88889999999996 46789
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhc
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~d-YLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~le~~d~~klt~~Eie~lssv~ 186 (668)
+||++|++++..... ++..|+.. |+.|+.+.++|..+++.+..+........ . .....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~-~~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------N-LPTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------c-CCcccCCHHHHHHHHHHH
Confidence 999999998776543 55556554 89999999999999999877653322110 0 011248999999999999
Q ss_pred cCCcchhhhhhhccccc
Q 005938 187 EGTEGTFKAQRKRISAK 203 (668)
Q Consensus 187 eg~e~~vk~~~k~I~~k 203 (668)
+|...+..+.+..++.+
T Consensus 151 ~G~snkeIA~~L~iS~~ 167 (207)
T PRK15411 151 AGQGTIQISDQMNIKAK 167 (207)
T ss_pred cCCCHHHHHHHcCCCHH
Confidence 99888777766666543
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.50 E-value=2.3e-13 Score=148.27 Aligned_cols=119 Identities=37% Similarity=0.623 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
..++||||||++..+..++..|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 4589999999999999999999999999999999999999887654 999999999999999999999974 4678999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|++.+.+.+.++++.||.+||.||++.++|...+.+++..
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 56
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.49 E-value=1.2e-12 Score=128.38 Aligned_cols=117 Identities=27% Similarity=0.436 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999988999999999999999987655 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
...+......+++.||++|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 999988889999999999999999999999988887664
No 57
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=5.4e-13 Score=146.25 Aligned_cols=119 Identities=34% Similarity=0.530 Sum_probs=109.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
+...+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 45678999999999999999999999999999999999999988665 999999999999999999999974 467999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|++|++.+.+.+.++++.|+.+||.||++.++|...+++++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999988877654
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.48 E-value=4.9e-13 Score=125.59 Aligned_cols=119 Identities=31% Similarity=0.480 Sum_probs=108.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
...+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.|++++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 4578999999999999999999888999999999999998887654 999999999999999999999974 4678999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+++...+......+++.|+.+|+.||++.++|...+..++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888877764
No 59
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.47 E-value=2.2e-12 Score=121.72 Aligned_cols=158 Identities=17% Similarity=0.251 Sum_probs=121.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
..++|||+||++..+..+...|... ++.+ ..+.++.+++..+.... ||+||+|+.|++++|+++++.++. .+.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 3478999999999999999999865 4554 47899999998887655 999999999999999999999974 46789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccc-----cccCCcccccccCCCchhHHHHh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSGSLEETDHHKRGSDEIEYAS 183 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~-----e~~~~le~~d~~klt~~Eie~ls 183 (668)
+|++|...+......++..|+.+|+.||++.++|...+..+++......... .............++.++.+++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~ 159 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILK 159 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999988765432111000 00000011122346777778777
Q ss_pred hhccCCcc
Q 005938 184 SVNEGTEG 191 (668)
Q Consensus 184 sv~eg~e~ 191 (668)
.+.++...
T Consensus 160 l~~~g~~~ 167 (211)
T PRK15369 160 LITEGYTN 167 (211)
T ss_pred HHHCCCCH
Confidence 77666443
No 60
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=5.7e-13 Score=145.86 Aligned_cols=118 Identities=30% Similarity=0.528 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
..+||||||++..+..+...|...++.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 379999999999999999999998999999999999999987655 999999999999999999999964 46799999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|+..+.+.+.++++.||.+||.||++.++|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888764
No 61
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.47 E-value=8.7e-13 Score=145.58 Aligned_cols=117 Identities=35% Similarity=0.495 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
.+||||||++..+..++.+|...+|.|..+.++.+|+..+.... ||+||+|+.||++||+++++.|+. .+.+|+|++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999999999999999998665 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++.+.+.+.++++.|+.+||.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 62
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.47 E-value=9.9e-13 Score=155.27 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=126.4
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccCC-------C--------CCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD-------Q--------FPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~e-------~--------fP~girVLIVDDDp~ire~Lk~lL~~~gy 58 (668)
|+|++++++.|||. +.|.+|+..+.... . ...+.+||||||++..+..++..|...+|
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 58999999999992 55666655443211 0 11356899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 59 ~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
.+..+.++.++++.+......||+||+ .||+++|+++++.|+. .+.+|||++++..+.....+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765445899999 7999999999999974 5789999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005938 138 REEELKNIWQHVVRK 152 (668)
Q Consensus 138 s~eEL~~iLq~Vlrk 152 (668)
+.++|..++.++++.
T Consensus 800 ~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 800 SSRTLAYALRTALAT 814 (828)
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988764
No 63
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.46 E-value=9.3e-13 Score=144.25 Aligned_cols=113 Identities=25% Similarity=0.415 Sum_probs=103.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh-ccCCCcE
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG-LEMDLPV 109 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd-----mDG~ELLe~Ir-~~~~IPV 109 (668)
||||||++..+..+...+ .+|.|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 6899999999999999998765 999999999996 89999999996 4578999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++|+..+.+.+.++++.||++||.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999877653
No 64
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.46 E-value=1.9e-12 Score=123.37 Aligned_cols=157 Identities=23% Similarity=0.281 Sum_probs=120.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~-~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPV 109 (668)
.++||||||++..+..+...|.. .++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467764 6889999999887655 9999999999999999999999743 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccc-----cccC-CcccccccCCCchhHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSG-SLEETDHHKRGSDEIEYAS 183 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~-----e~~~-~le~~d~~klt~~Eie~ls 183 (668)
|+++...+.....++++.|+++|+.||++.++|...++.++++........ .... .........++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999999998899999999999999999999999999988765422111000 0000 0011112346778888887
Q ss_pred hhccCCcc
Q 005938 184 SVNEGTEG 191 (668)
Q Consensus 184 sv~eg~e~ 191 (668)
.+.++...
T Consensus 164 ~~~~g~s~ 171 (215)
T PRK10403 164 ELAQGLSN 171 (215)
T ss_pred HHHCCCCH
Confidence 77666443
No 65
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.45 E-value=1.1e-12 Score=139.55 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=90.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~-~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
++||||||++..+..++.+|. ..++.+. .+.++.++++.+.... ||+||+|+.||+|+|++++++|+....+|+|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5577775 7899999999998765 99999999999999999999998666799999
Q ss_pred EeccCC--HHHHHHHHHcCCcEEEeCCC
Q 005938 112 MSADGR--VSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 112 LSa~sd--~e~a~kAl~~GA~dYLlKPi 137 (668)
+++..+ .+...++++.|+.+||.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998754 56677899999999999999
No 66
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.45 E-value=3.2e-12 Score=122.27 Aligned_cols=162 Identities=18% Similarity=0.290 Sum_probs=123.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
...+||||||++..+..+...|... ++.+ ..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4478999999999999999999764 5554 46889999999887655 999999999999999999999974 46789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccc--------cccCCcccccccCCCchhHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------ENSGSLEETDHHKRGSDEIE 180 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~--------e~~~~le~~d~~klt~~Eie 180 (668)
+|+++...+......+++.|+.+|+.||++.++|...++.++++........ .............++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999998876432111100 00000001112247788888
Q ss_pred HHhhhccCCcchhhh
Q 005938 181 YASSVNEGTEGTFKA 195 (668)
Q Consensus 181 ~lssv~eg~e~~vk~ 195 (668)
++..+.+|......+
T Consensus 163 vl~~l~~g~~~~~ia 177 (216)
T PRK10651 163 ILKLIAQGLPNKMIA 177 (216)
T ss_pred HHHHHHcCCCHHHHH
Confidence 888877775444433
No 67
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.42 E-value=1.2e-11 Score=105.80 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=105.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
.++|+++|+++.....++..|...++. +..+.++.+++..+.... +|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988874 778899999999887654 9999999999999999999999743 5689
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|+++...+.....++++.|+.+|+.||++.++|...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999887654
No 68
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.42 E-value=2.5e-12 Score=141.45 Aligned_cols=115 Identities=35% Similarity=0.527 Sum_probs=106.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa 114 (668)
||||||++..+..+...|...++.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999988999999999999999987654 999999999999999999999974 46789999999
Q ss_pred cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 115 ~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+.+...+.++++.|+.+||.||++.++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 69
>PRK13435 response regulator; Provisional
Probab=99.41 E-value=5.3e-12 Score=116.33 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=101.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~~~~IPVI 110 (668)
.++|||+|+++..+..+...|...++.+. .+.++.++++.+.... ||+||+|..|+ +.+|+++++.++....+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 47999999999999999999998888876 7899999999887654 99999999998 58999999999766789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+++...+. ..++..|+++|+.||++.++|...++++..++
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 99876442 46788999999999999999999999887554
No 70
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.40 E-value=7.5e-12 Score=134.22 Aligned_cols=118 Identities=35% Similarity=0.524 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+.+|+++++.|+.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999888999999999999999998765 9999999999999999999999753 368999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++++..+.....++++.||.+||.||++.++|..++..+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543
No 71
>PRK13557 histidine kinase; Provisional
Probab=99.39 E-value=7e-12 Score=137.35 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=125.5
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCe
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~e~--------------fP~girVLIVDDDp~ire~Lk~lL~~~gy~ 59 (668)
|++++++++.+||. +.|..++..+..... -+.+.+||||||++..+..+..+|...+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 57999999999992 556666544432110 113568999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999974 4678999999999988888899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005938 138 REEELKNIWQHVVR 151 (668)
Q Consensus 138 s~eEL~~iLq~Vlr 151 (668)
+.++|...+..++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887654
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=8.9e-12 Score=133.27 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=91.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++||||||++..+..+..+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999988765 9999999999999999999999765559999
Q ss_pred EEeccC--CHHHHHHHHHcCCcEEEeCCCC
Q 005938 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 111 ILSa~s--d~e~a~kAl~~GA~dYLlKPis 138 (668)
++|+.. +.....++++.|+++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999754 3466778999999999999994
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.36 E-value=5.8e-12 Score=144.37 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..+..+|...+|.|..+.++.+++..+.... |||||+|+.||+++|++++++|+. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999888999999999999999887655 999999999999999999999974 57899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHH--HHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~e--EL~~iLq~Vlrk 152 (668)
+|+..+.+.+.+++..|+.+|+.||.... ++...++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555566555543
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.34 E-value=1.1e-11 Score=133.19 Aligned_cols=104 Identities=35% Similarity=0.471 Sum_probs=94.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.+|||||||....|+.|+++|...+ ..|.++.|+.+|++++.... ||+|.+|+.||.|||++++++|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999886 56679999999999999887 9999999999999999999999766899999
Q ss_pred EEeccCC--HHHHHHHHHcCCcEEEeCCCC
Q 005938 111 MMSADGR--VSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 111 ILSa~sd--~e~a~kAl~~GA~dYLlKPis 138 (668)
|+++-.. .+...+|+++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987544 567789999999999999974
No 75
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.32 E-value=3.1e-12 Score=135.37 Aligned_cols=63 Identities=57% Similarity=0.869 Sum_probs=60.7
Q ss_pred CCCCccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHh
Q 005938 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 284 (668)
Q Consensus 217 ~sKKprvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~ 284 (668)
..||+|++|+.+||++|+++|++||.+||+||+||++|+++|||+++|++|| ||||.++|++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHL-----QKYRl~rk~l~ 294 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHL-----QKYRSHRRHLA 294 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHH-----HHHHHhccccc
Confidence 5789999999999999999999999999999999999999999999999999 99999999874
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.27 E-value=9.1e-11 Score=118.16 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=99.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~~~IPVI 110 (668)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998888877 7889999999987654 999999999995 8999999999754489999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|+..+... .+...++.+|+.||++.++|...++++...
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999776543 344567889999999999999999887543
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.23 E-value=7.2e-11 Score=117.16 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=102.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
.++||++||++..+..+...|...||.+ .++.++.++.+.+.... ||+||+|+.||..|-.+-+.........|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 4789999999999999999999999965 57778888888888776 99999999999999444444444557789999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|++++...+.++++.||.+||+||++...|+.++.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999988776543
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.20 E-value=3.3e-10 Score=91.98 Aligned_cols=111 Identities=36% Similarity=0.583 Sum_probs=99.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecc
Q 005938 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (668)
Q Consensus 37 LIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~ 115 (668)
+++|+++..+..+...+...++.+..+.+..+++..+.... +|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 47899999999999999988999989999999999887654 999999999999999999999975 467899999988
Q ss_pred CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 116 sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
.+.....+++..|+.+|+.||++.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.12 E-value=4.3e-10 Score=118.65 Aligned_cols=89 Identities=25% Similarity=0.469 Sum_probs=80.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CH
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi-s~ 139 (668)
.+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++|+..+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 4788999999987755 999999999999999999999974 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHH
Q 005938 140 EELKNIWQHVVRK 152 (668)
Q Consensus 140 eEL~~iLq~Vlrk 152 (668)
++|...+.++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988877654
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=4.9e-10 Score=115.40 Aligned_cols=116 Identities=28% Similarity=0.438 Sum_probs=98.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.++|+++||++..++.|..++... .. .+..+.++.++++.+.... +|++++||.||+++|+++...|+. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLR--PDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccC--CCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 368999999999999999999832 22 2337889999999998774 999999999999999999999986 455678
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+++|++++. +..+++..|.|||.||++.++|...+.++.+.
T Consensus 79 vfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899988755 77888999999999999999999999876553
No 81
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.92 E-value=6.7e-10 Score=113.86 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=58.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+||+.+|++|.+||+++||++|+ +||..+++++.|||.+|||.|..||.+.|||++|+||.
T Consensus 207 ~Fk~~~G~S~~~yi~~~Rl~~A~-----~LL~~~~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 267 (278)
T PRK13503 207 QLKQQTGLTPQRYLNRLRLLKAR-----HLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSPR 267 (278)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 89999999999999999999995 88888999999999999999999999999999999995
No 82
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.91 E-value=5.9e-10 Score=114.98 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=59.1
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+|++++|++|.+||+++||++|+ +||..+++++.|||..|||.|..||.+.|||.+|+||+
T Consensus 211 r~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~F~r~FKk~~G~tP~ 272 (282)
T PRK13502 211 QQFRAQTGMTINQYLRQVRICHAQ-----YLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPS 272 (282)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 389999999999999999999996 78888999999999999999999999999999999995
No 83
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.91 E-value=7.5e-10 Score=115.12 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=59.5
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+||+++|.+|.+||+++||++|+ +||..++++|.|||..|||.|..||.+.|||++|+||.
T Consensus 211 r~Fk~~~G~T~~qyi~~~Ri~~A~-----~LL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 272 (290)
T PRK13501 211 QLFRQQTGMSISHYLRQIRLCHAK-----CLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPR 272 (290)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 389999999999999999999996 88889999999999999999999999999999999996
No 84
>PRK15029 arginine decarboxylase; Provisional
Probab=98.90 E-value=8.9e-09 Score=120.81 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=90.3
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 005938 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (668)
Q Consensus 34 irVLIVDDDp~--------ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~----ELLe~I 101 (668)
|||||||||.. .++.|+..|+..+|+|..+.++.+|+..+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 239999999999999998 899999
Q ss_pred hc-cCCCcEEEEeccCC--HHHHHHHHHcCCcEEEeCCCCHHHH-HHHHHHH
Q 005938 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIREEEL-KNIWQHV 149 (668)
Q Consensus 102 r~-~~~IPVIILSa~sd--~e~a~kAl~~GA~dYLlKPis~eEL-~~iLq~V 149 (668)
|. ..++|||++|+..+ ...... +---+.+|+.+--+..++ ...+...
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHH
Confidence 85 46899999999986 322222 223367888887665554 3334443
No 85
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.89 E-value=2.5e-09 Score=87.40 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=50.3
Q ss_pred CccchhhHHHhHHHHHHHHHhcc-cccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHH
Q 005938 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQEINLQKFRL 278 (668)
Q Consensus 220 Kprvvwk~Elg~tFv~yLnqLRI-eKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk 278 (668)
|+|+.|+.|+|..|+++|..+|. +.|.||+|+++|..+++|+.+|++|+ |+|+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~-----QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL-----QKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH-----HHHHc
Confidence 57889999999999999999998 99999999999999999999999999 66653
No 86
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=98.88 E-value=1.4e-09 Score=97.51 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=58.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|++.+|.+|.+|++++||++|. ++|..+++++.+||..+||.|+.+|++.|||++|+||.
T Consensus 40 r~f~~~~g~s~~~~i~~~Rl~~a~-----~~L~~~~~~i~~iA~~~Gf~~~s~f~~~Fk~~~G~tP~ 101 (107)
T PRK10219 40 RMFRTVTHQTLGDYIRQRRLLLAA-----VELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPS 101 (107)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHccCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 77888899999999999999999999999999999985
No 87
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.84 E-value=1.8e-09 Score=114.18 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=59.3
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..||+.+|.+|.+||+++||++|+ +||..+++++.|||..|||.|.+||.++|||.+|+||.
T Consensus 241 r~FK~~tG~T~~~yi~~~RL~~A~-----~LL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~TP~ 302 (312)
T PRK13500 241 QQFRQQTGMTINQYLRQVRVCHAQ-----YLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPS 302 (312)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 389999999999999999999996 78888999999999999999999999999999999996
No 88
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=98.84 E-value=1.9e-09 Score=111.75 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|++.+|.+|.+|++++||++|+ .||..+++++.+||..|||.|+.||.+.|||++|+||.
T Consensus 219 ~Fk~~~G~tp~~~l~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~SP~ 279 (290)
T PRK10572 219 LFRQQLGISVLRWREDQRISRAK-----LLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279 (290)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 89999999999999999999995 77778999999999999999999999999999999996
No 89
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.82 E-value=2.3e-09 Score=110.52 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=58.2
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+|++.+|++|.+||+++||++|+ +||..+++++.|||..|||.|..||.++|||++|+||.
T Consensus 222 ~Fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~s~s~Fsr~FKk~~G~tP~ 282 (287)
T TIGR02297 222 ICRRFSALSPKRLIIERVMQEAR-----RLLLFTQHSINQIAYDLGYKDPAYFARFFQKETGLSPS 282 (287)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 66778999999999999999999999999999999985
No 90
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.76 E-value=5e-09 Score=108.07 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=58.5
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.||+.+|.+|.+||+++|+++|+ +||..+++++.+||..|||.|..||.+.|||++|+||.
T Consensus 208 ~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 268 (278)
T PRK10296 208 ATRRYYGKTPMQIINEIRINFAK-----KQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPG 268 (278)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77788999999999999999999999999999999995
No 91
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=98.74 E-value=7.1e-09 Score=96.62 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=58.1
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++|+++|. ++|..+++++.+||..+||.|+.+|++.||+++|+||.
T Consensus 44 r~Fk~~~G~s~~~~l~~~Rl~~A~-----~~L~~t~~~i~eIA~~~Gf~s~s~F~r~Fkk~~G~tP~ 105 (127)
T PRK11511 44 RMFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 105 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999985 66777899999999999999999999999999999996
No 92
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=98.73 E-value=5.3e-09 Score=88.97 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=52.5
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHh-cCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELM-NVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL-~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+|+.++|.+|.+|++++|+++|. ++| ..+++++.|||..+||.|.++|.+.||+++|+||.
T Consensus 14 ~~f~~~~g~s~~~~~~~~R~~~a~-----~~L~~~~~~~i~~ia~~~Gf~~~~~f~~~fk~~~g~tP~ 76 (81)
T PF12833_consen 14 RIFKKETGMSFKQYLRELRLQRAK-----ELLRQNTDLSIAEIAEECGFSSQSHFSRAFKRYFGMTPS 76 (81)
T ss_dssp HHHHHHHSS-HHHHHHHHHHHHHH-----HHHHHHTT--HHHHHHHTT-SSHHHHHHHHHHHHSS-HH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHHhhcccHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 666 45999999999999999999999999999999984
No 93
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=98.62 E-value=2.9e-08 Score=88.74 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=58.5
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+.++|.+|.+|++++||++|. .+|..++.++.+||..+||.|..||.+.||+.+|+||.
T Consensus 56 ~f~~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~iA~~~Gf~~~s~F~~~Fk~~~g~tP~ 116 (127)
T COG2207 56 LFKKETGTSPSQYLRQLRLEEAR-----RLLRSTDLSITEIALRLGYSSPSHFSRAFKRLFGVTPS 116 (127)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCcCCHHHHHHHHHHHhCCChH
Confidence 79999999999999999999995 78888999999999999999999999999999999997
No 94
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.56 E-value=3.6e-08 Score=104.20 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=58.8
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+|++++|.+|.+||+++|+++|. ++|..+++++.+||..+||.|..+|.+.|||++|+||.
T Consensus 226 r~Fk~~~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 287 (302)
T PRK10371 226 GIFQRVMQLTMKQYITAMRINHVR-----ALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQ 287 (302)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 389999999999999999999996 77888999999999999999999999999999999995
No 95
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=98.55 E-value=4.1e-08 Score=104.01 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=59.3
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
...|++++|.+|.+|++++||++|. ++|..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 252 ~r~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 314 (322)
T PRK09393 252 LRRFEAATGMTPAEWLLRERLARAR-----DLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPA 314 (322)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 3489999999999999999999995 77888999999999999999999999999999999985
No 96
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=98.54 E-value=3.2e-08 Score=103.95 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=56.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+.+ |.+|.+||+++||++|. +||..+++++.+||..+||.|..+|++.|||++|+||+
T Consensus 178 ~Fk~~-G~S~~~yl~~~Rl~~A~-----~LL~~t~~sI~eIA~~~GF~s~S~Fsr~FKk~~G~TPs 237 (274)
T PRK09978 178 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 237 (274)
T ss_pred HHHhc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68876 99999999999999996 77888999999999999999999999999999999996
No 97
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=98.48 E-value=6.9e-08 Score=100.51 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=54.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcC--CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNV--PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v--~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|++ .|.+|.+||+++||++|. ++|.. ++++|.|||..+||.|..||.+.|||.+|+||.
T Consensus 233 r~Fk~-~G~T~~~yi~~~RL~~A~-----~lL~~~~~~~sI~eIA~~~GF~d~s~Fsr~Fkk~~G~sP~ 295 (302)
T PRK09685 233 RLFAE-QGLVVAQYIRNRRLDRCA-----DDLRPAADDEKITSIAYKWGFSDSSHFSTAFKQRFGVSPG 295 (302)
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHH-----HHhhhhccCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 37886 599999999999999995 66632 578999999999999999999999999999995
No 98
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=98.48 E-value=9.6e-08 Score=99.96 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=58.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
++|+.++|.++.+|++++|+++|+ .+|..+++++.+||..+||.|+++|++.|||.+|+||.
T Consensus 40 r~F~~~~g~s~~~yi~~~Rl~~A~-----~~L~~~~~~i~~iA~~~Gf~s~~~f~r~Fk~~~g~sP~ 101 (289)
T PRK15121 40 RMFKDVTGHAIGAYIRARRLSKAA-----VALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 (289)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999996 77777999999999999999999999999999999996
No 99
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=98.45 E-value=9.7e-08 Score=99.36 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=54.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+.+ |.+|.+|++++||++|. +||. ++.++.+||..|||.|..+|.+.|||++|+||.
T Consensus 170 ~FK~~-G~T~~eyl~~~Rl~~A~-----~LL~-~~~sI~eIA~~~GF~s~S~Fsr~FKr~~G~TPs 228 (253)
T PRK09940 170 KLKQE-QTTFSQILLDARMQHAK-----NLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 (253)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHc-cCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68887 99999999999999995 5565 467999999999999999999999999999996
No 100
>PRK15044 transcriptional regulator SirC; Provisional
Probab=98.45 E-value=7.8e-08 Score=101.64 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=57.2
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+..|+.+ |.+|.+++.++||++|. +||..+++++.+||.+|||.|..||++.|||++|+||+
T Consensus 226 ~R~Fk~e-g~T~~~y~~~~RL~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsRaFKk~fG~TPs 287 (295)
T PRK15044 226 KRKLAAE-EVSFSKIYLDARMNQAI-----KLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 (295)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcCHH
Confidence 3468776 89999999999999996 78888999999999999999999999999999999996
No 101
>PRK15185 transcriptional regulator HilD; Provisional
Probab=98.41 E-value=1.2e-07 Score=100.90 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=56.3
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+. +|.+|.+|++++||++|. +||..+++++.+||..+||.|..||.+.|||++|+||.
T Consensus 242 ~FK~-~G~S~~~yl~~~Ri~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsR~FKk~~G~TPs 301 (309)
T PRK15185 242 KLAE-EGTSFSDIYLSARMNQAA-----KLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPS 301 (309)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 5775 799999999999999995 78888999999999999999999999999999999986
No 102
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=98.35 E-value=4.1e-07 Score=75.64 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+..+|.++.++++..|+++|. ++|...++++.+||.++||.|..+|.+.||+++|+||.
T Consensus 21 ~f~~~~~~s~~~~~~~~r~~~a~-----~~l~~~~~~~~~ia~~~g~~s~~~f~r~Fk~~~g~sp~ 81 (84)
T smart00342 21 LFKKETGTTPKQYLRDRRLERAR-----RLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81 (84)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcChh
Confidence 68889999999999999999985 66666789999999999999999999999999999986
No 103
>PRK15340 transcriptional regulator InvF; Provisional
Probab=98.33 E-value=3.5e-07 Score=93.16 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=56.8
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+++|++.+|.++.+|++++|+.+|. .+|..++.++.+||..+||.|+.+|.+.||+++|+||.
T Consensus 143 ~RlFk~~~G~tpk~yl~~~Rl~~al-----l~L~~s~~sItdIA~~~GY~d~ShFsr~FKk~~G~TPs 205 (216)
T PRK15340 143 RRLCSRALGGKAKSELRNWRMAQSL-----LNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPR 205 (216)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH-----HhhhcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 4489999999999999999998873 34445799999999999999999999999999999996
No 104
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=98.31 E-value=3e-07 Score=97.46 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=57.1
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+..|+.+ |.+|.+++.++||.+|. ++|..+++++.+||..|||.|..||++.|||++|+||.
T Consensus 215 ~R~Fk~~-g~s~~~~~~~~Rl~~A~-----~lL~~~~~sI~~IA~~~GY~s~S~Fsr~FK~~~G~TP~ 276 (291)
T PRK15186 215 KRKLKQE-NTSFSEVYLNARMNKAT-----KLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPS 276 (291)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 3468876 99999999999999995 77888899999999999999999999999999999996
No 105
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=98.25 E-value=6.3e-07 Score=96.38 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 219 KKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 219 KKprvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
++.-+.|+.+||.++.+|+.++|+++|. +||..+.+++.+||..|||.++.+|++.||+.+|.+|.
T Consensus 251 R~leRlF~~~lG~sP~~yy~~lRL~~Ar-----~LL~~t~~si~~IA~~~GF~sa~~fsr~fr~~fg~~P~ 316 (328)
T COG4977 251 RQLERLFRAELGVSPARYYLRLRLERAR-----RLLEQTRLSIAEIAVACGFSSASHFSRAFRRQFGLSPS 316 (328)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-----HHHHhCCCcHHHHHHHhCCCCHHHHHHHHHHHhCCChH
Confidence 3334489999999999999999999996 88999999999999999999999999999999999996
No 106
>PRK10130 transcriptional regulator EutR; Provisional
Probab=98.20 E-value=1.1e-06 Score=95.34 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=57.5
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcC---CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNV---PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGG 291 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v---~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~~ 291 (668)
..|++.+|+++.+||+++|+++|. ++|.. ++.++.+||.++||.|..+|.+.|||.+|++|...
T Consensus 275 r~Fk~~~G~sp~~ylr~~RL~~ar-----~lL~~~~~~~~sI~eIA~~~GF~~~s~Fs~~fk~~fG~tPs~T 341 (350)
T PRK10130 275 NAFHAILGIGPNAWLKRIRLNAVR-----RELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLT 341 (350)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhccCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCcHHH
Confidence 389999999999999999999994 45543 67899999999999999999999999999999743
No 107
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=98.13 E-value=1.7e-06 Score=93.97 Aligned_cols=61 Identities=5% Similarity=-0.052 Sum_probs=56.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+|++++|.+|.+|++.+|+++|. ++|. +++++.+||..+||.|..+|.+.|||++|+||.
T Consensus 118 R~Fkk~~G~TP~~yl~~~Rl~~A~-----~lL~-~~~sI~eIA~~~Gf~s~s~F~~~Fkk~~G~TPs 178 (353)
T PRK15435 118 RLFKATTGMTPKAWQQAWRARRLR-----EALA-KGESVTTSILNAGFPDSSSYYRKADETLGMTAK 178 (353)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHh-CCCCHHHHHHHhCCCChHHHHHHHHHHHCcCch
Confidence 379999999999999999999995 5554 679999999999999999999999999999997
No 108
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.13 E-value=2.3e-05 Score=92.91 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=115.7
Q ss_pred ChHHHHHHHHcCCC-------CCCCccccccccC-----------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 005938 1 MAALQRIVQSSGGS-------GYGSSRAADVAVP-----------DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (668)
Q Consensus 1 la~~~~lv~~~gGs-------~~~~~~~~d~~~~-----------e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~t 62 (668)
|+|++++++.|||. +.|.++++.+.+. .....+.+|+|+||++..+..+..+|..+++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 58999999999992 5677776655431 11235789999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hc--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCH
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I-r~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~ 139 (668)
+.+..+ +... .||++|+|+.||++++.+.+... +. ....++|+++...+......+.+.|+.+|+.||+..
T Consensus 566 ~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988887 3333 49999999999998877665544 32 234568888888888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005938 140 EELKNIWQHVV 150 (668)
Q Consensus 140 eEL~~iLq~Vl 150 (668)
.+|...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 109
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.02 E-value=5.1e-06 Score=92.39 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=82.2
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 57 gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
.++|.++..+.+++..+..+. ||++++|+.||+|+|++++++++..+.. ++++|+.++.....++++.|++++|+||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 356777999999999998766 9999999999999999999999876655 8999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 005938 137 IREEELKNIWQHVVRKR 153 (668)
Q Consensus 137 is~eEL~~iLq~Vlrk~ 153 (668)
+....+......+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99998887777665543
No 110
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.80 E-value=2.9e-05 Score=93.60 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=64.6
Q ss_pred ChHHHHHHHHcCC-------CCCCCccccccccC----------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 005938 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP----------DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (668)
Q Consensus 1 la~~~~lv~~~gG-------s~~~~~~~~d~~~~----------e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~ta 63 (668)
|+||++||+.||| .+.|++|++.+... +....+.+||||||++..++.++.+|+.+|+.|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 5899999999999 37788887665541 112357899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCC
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~M 89 (668)
.+.. .. ..|||||+|..+
T Consensus 720 ~~~~------~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------IS--QEYDIFLTDNPS 737 (894)
T ss_pred Cccc------cC--CCCCEEEECCCC
Confidence 7632 12 349999999984
No 111
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=97.57 E-value=4.3e-05 Score=57.97 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.++++.+||+++|| +..||++.||+++|+||+
T Consensus 7 ~~~~l~~iA~~~g~-S~~~f~r~Fk~~~g~tp~ 38 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF-SPSYFSRLFKKETGMTPK 38 (42)
T ss_dssp SS--HHHHHHHHTS--HHHHHHHHHHHTSS-HH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHH
Confidence 56999999999999 999999999999999985
No 112
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=97.50 E-value=6.6e-05 Score=74.91 Aligned_cols=63 Identities=5% Similarity=0.003 Sum_probs=58.8
Q ss_pred ccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 221 prvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.+..||.++|++|.+|....|+..|. ++|..++ +|.+++..+||.+..+|+..|++++|++|+
T Consensus 114 ~~R~FK~~~G~Tp~~ya~a~R~~~a~-----~~L~~g~-sv~~a~~daGf~s~s~F~~af~~~~G~~P~ 176 (187)
T COG2169 114 LHRLFKAITGMTPKEYARARRMGRAR-----KQLRMGA-SVTDAQIDAGFESSSRFYDAFSKILGMTPT 176 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-----HHHhCCC-chhHHHHHhCCCChHHHHHHHHHHcCCChH
Confidence 35589999999999999999999995 7788888 999999999999999999999999999996
No 113
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.43 E-value=0.0011 Score=46.64 Aligned_cols=55 Identities=40% Similarity=0.643 Sum_probs=48.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MP 90 (668)
++|+++|+++..+..+...+...++.+..+.+..+++..+.... +|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999988999989999999998887654 99999998654
No 114
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.24 E-value=0.0023 Score=58.57 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=74.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEE-EeCCCCCCCHHHHHHHH-hccCCCcEEEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVL-SDVHMPDMDGFKLLEHI-GLEMDLPVIMM 112 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVI-lDI~MPdmDG~ELLe~I-r~~~~IPVIIL 112 (668)
||||||||..-+..|+.+|+-.|+.+..++...- ........ .+.++ +....+ ...++++.+ +..+.+||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999877765433 22223222 45443 333333 445666666 46689999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
.......... .+.+-|..|++..+|...++++
T Consensus 76 g~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 8776651111 1566789999999999998875
No 115
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.26 E-value=0.59 Score=43.33 Aligned_cols=105 Identities=10% Similarity=-0.035 Sum_probs=73.8
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-CCCcEEEEe
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE-MDLPVIMMS 113 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~~-~~IPVIILS 113 (668)
|.+..=...+..+|+..||+|.... ..++.++.+.+.. ||+|.+-..+... .--++++.+++. +....|++-
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5566666777888888899987543 4678888888776 9999998877542 223456666544 333445566
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
+..-.+...+..++|.++|+-.--+.++....+
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 555556677788999999999887777766544
No 116
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.09 E-value=0.82 Score=43.73 Aligned_cols=115 Identities=15% Similarity=0.025 Sum_probs=82.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~ 103 (668)
+.+||+. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+-..|... .-.+++++|++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4577777 777888888899999999999854 35678888888776 9999999887643 34456667764
Q ss_pred c--CCCcEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 104 E--MDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 104 ~--~~IPVIILSa~s------d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
. ++++|+ +-+.. ..+...++.++|++......-+.+++...+++.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 355444 33332 3445567889999888888888888887776654
No 117
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=94.72 E-value=0.27 Score=45.37 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCcEEEEeccCCHHHHH
Q 005938 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVM 122 (668)
Q Consensus 46 re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir-~~~~IPVIILSa~sd~e~a~ 122 (668)
...|...|...+++|..+.+.++++..++... .+..|++|+. ++ ....++++.|+ ....+||.+++.+...+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 45677778878999999999999999998764 6899999986 21 23456788886 46899999998876555555
Q ss_pred HHHHcCCcEEEeCCCC-HHHHHHHHHHHHH
Q 005938 123 RGIRHGACDYLIKPIR-EEELKNIWQHVVR 151 (668)
Q Consensus 123 kAl~~GA~dYLlKPis-~eEL~~iLq~Vlr 151 (668)
..+--.+++|+...-+ .+.+...+..+.+
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 5566678899988764 4555566666554
No 118
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.58 E-value=0.4 Score=43.72 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=64.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMD-LPVIMMS 113 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~~~~-IPVIILS 113 (668)
|.+..=...+..+|+..||+|... ...++.++.+.+.+ ||+|.+-..+... +..++++.+++... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 566667778889999999998643 34667888888776 9999998876542 45667777765432 2345566
Q ss_pred ccCCHHHHHHHHHcCCcEEEeC
Q 005938 114 ADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 6555444557788999766653
No 119
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.61 E-value=3 Score=39.64 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=76.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 005938 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (668)
Q Consensus 34 irVLIV----DDDp~ire~Lk~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd-mDG-~ELLe~Ir~~ 104 (668)
.||++. |-+..-...+..+|+..||+|.. ..+.+++++.+.+.. +|+|.+-..+.. +.. -++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 44455556777888888999874 456788888888765 999988776632 222 2345555543
Q ss_pred -CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 105 -~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.....|++-+..-.+...+..++|+++|+..--+..++...+.+.+.+
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 222234444333344566788999999999878888888777765443
No 120
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.33 E-value=2.2 Score=44.99 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=77.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-E-ECCHHHHHHHHHHcCCCceEEEEeCCCC---------CCCH
Q 005938 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNVT-T-CSQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~------~~gy~V~-t-asng~EALelLre~~~~PDLVIlDI~MP---------dmDG 94 (668)
..+|+=|+.|+.....-+.+.++ +.||.|. . ..+...|-.+.. .. +|+| || +..-
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~-~G--~~~v-----mPlg~pIGsg~Gi~~ 163 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED-AG--CAAV-----MPLGSPIGSGQGLLN 163 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-cC--CCEe-----CCCCcCCCCCCCCCC
Confidence 46888888877654444433333 2388876 4 445666655544 33 7887 66 2212
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlrk 152 (668)
.++++.|++..++|||+=.+-...+.+.+++++||+..+. |.-++..+.+.+..++..
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 6888888776789999988889999999999999999864 545567776666665543
No 121
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.80 E-value=5.2 Score=35.97 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=58.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCC-CCC-CHHHHHHHHhcc-CCCcEEEEe
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMS 113 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~M-Pdm-DG~ELLe~Ir~~-~~IPVIILS 113 (668)
+-++.-...+..+|++.|++|... .+.++..+.+++.+ ||+|.+...+ +.. ...++++.+|+. ++++||+ -
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-G 87 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-G 87 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-E
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-E
Confidence 345677889999999999999766 23467777777766 9999999844 433 345666777654 4555554 4
Q ss_pred ccCCHHHHHHHHH--cCCcEEEe
Q 005938 114 ADGRVSAVMRGIR--HGACDYLI 134 (668)
Q Consensus 114 a~sd~e~a~kAl~--~GA~dYLl 134 (668)
+..-.......++ .|++..+.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEE
T ss_pred CCchhcChHHHhccCcCcceecC
Confidence 4433333344454 45554443
No 122
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.63 E-value=2.4 Score=44.72 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=77.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EE-CCHHHHHHHHHHcCCCceEEEEeCCCC---------CCCH
Q 005938 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNVT-TC-SQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~------~~gy~V~-ta-sng~EALelLre~~~~PDLVIlDI~MP---------dmDG 94 (668)
..+|+=|+.|+.....-+...++ +.||.|. .| .+...|-.+.. .. +|+| || +..-
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~-~G--~~~v-----mPlg~pIGsg~gi~~ 163 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE-AG--CAAV-----MPLGAPIGSGLGLLN 163 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-cC--CCEe-----CCCCcCCCCCCCCCC
Confidence 46888888777643333333332 3388876 44 45666655444 33 7887 66 1211
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlrk 152 (668)
.++++.|++..++|||+=.+-...+.+.+++++||+..+. |.-++..+.+.+..++..
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 6788888766789999988899999999999999999864 545677777776666543
No 123
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=90.39 E-value=2.8 Score=50.33 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=74.1
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 005938 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (668)
Q Consensus 34 irVLIVDDDp-~-----ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~ 106 (668)
|+|+|||++- . -.+.|..-|+..+|.|..+.+..+++..++.. ...+.|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788898873 2 24556667777899999999999999998854 4688999995322 355888886 4578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIR-EEELKNIWQHVVR 151 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis-~eEL~~iLq~Vlr 151 (668)
+||+++........+-...---+.+|+..--+ .+.+...+..+.+
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 99999876543333222333345566654433 3444344444443
No 124
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=88.83 E-value=3.8 Score=49.17 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=71.9
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 005938 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (668)
Q Consensus 34 irVLIVDDDp-~-----ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~ 106 (668)
|+|+||+++- . -.+.|..-|++.+|.|..+.+..+++..++.. ...+.|++|+.- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887772 1 24556677778899999999999999998854 468899999532 2 245788886 4578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVV 150 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vl 150 (668)
+||+++........+-...-.-+.+|+..-- +.+.+...+..+.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~ 121 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTT 121 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHH
Confidence 9999987654333222222223455555333 2444434344443
No 125
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.81 E-value=1.5 Score=46.93 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=52.8
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCcEEEeCC
Q 005938 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 58 y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa-~sd~e~a~kAl~~GA~dYLlKP 136 (668)
.+++.+.+..++-. ....-.+|++|..+-. ..++.. .-....+|++.+ ..+.+....|++.||.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARR----AWARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhh----ccccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 34555665554422 2223578999864411 111111 112233555544 5678889999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005938 137 IREEELKNIWQHV 149 (668)
Q Consensus 137 is~eEL~~iLq~V 149 (668)
++.++|...+.++
T Consensus 73 ~~~~~l~~~l~~~ 85 (322)
T TIGR03815 73 EAEGWLVELLADL 85 (322)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999888765
No 126
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=88.22 E-value=0.21 Score=56.81 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=48.8
Q ss_pred HHHHHH-HHHhcccccchHHHHHHhcCCC------CCHH-HHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 231 QQFVSA-VNQLGIDKAVPKRILELMNVPG------LTRE-NVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 231 ~tFv~y-LnqLRIeKA~PKkILeLL~v~g------Lti~-EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|.+| +.+.|+++|. .||..+. +.++ ++|+.|||.+..||...||++.|++|.
T Consensus 208 ~~~~ey~l~~~r~~~a~-----~ll~~s~~v~~~~~k~y~~iaekl~~~~~~~~~~~~k~~~~~~p~ 269 (475)
T COG4753 208 APFQEYGLLRKRLEQAK-----LLLVTSEQVSIYVLKVYREIAEKLGFEEADYFDYRFKKYLGMTPD 269 (475)
T ss_pred chHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHhcccccchhhHhhcccccCChH
Confidence 899999 9999999994 5666677 6777 999999999999999999999999996
No 127
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=87.85 E-value=0.46 Score=52.17 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=31.7
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCCC
Q 005938 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGG 291 (668)
Q Consensus 256 v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~~ 291 (668)
...++++++|.++|++ ..||.+.||+++|+||+.-
T Consensus 97 ~~~lsl~eLA~~lG~S-~~~L~R~Fkk~~G~TP~~y 131 (353)
T PRK15435 97 ETPVTLEALADQVAMS-PFHLHRLFKATTGMTPKAW 131 (353)
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHCcCHHHH
Confidence 4779999999999995 9999999999999999743
No 128
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.75 E-value=13 Score=35.82 Aligned_cols=107 Identities=12% Similarity=0.029 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-CCCcEEEEecc
Q 005938 42 DITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMSAD 115 (668)
Q Consensus 42 Dp~ire~Lk~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir~~-~~IPVIILSa~ 115 (668)
+..=...+..+|+..||+|.. ....++.++.+.++. +|+|-+...|.. +. --++.+.|++. ..-++|++-+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 344456778889999999874 567788889888876 999999887753 22 33455566543 22234555542
Q ss_pred -----CCHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 116 -----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 116 -----sd~e-~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
.+.. ...++.++|++..+...-..+++...+++.+
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 2333 2456788998888887778888888877654
No 129
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.45 E-value=17 Score=36.88 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=63.6
Q ss_pred CccEEEEEeCC----H--HHHHHHHHHHHh-CCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHH
Q 005938 32 AGLRVLVVDDD----I--TCLRILEQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFK 96 (668)
Q Consensus 32 ~girVLIVDDD----p--~ire~Lk~lL~~-~gy~V-~tasng~EALelLre~~~~PDLVIlDI~-------MPdmDG~E 96 (668)
.|..++++|-- + .....+.+.+++ .+..+ ..+.+.+++...... .+|+|.+... ......++
T Consensus 87 aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~ 163 (221)
T PRK01130 87 AGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFA 163 (221)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHH
Confidence 45566665432 1 222233333444 44444 356677777654432 3798865421 12233578
Q ss_pred HHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 97 LLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
++++++...++|||...+-.+.+.+.++++.||+..+.=
T Consensus 164 ~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 164 LLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 888887666899999888888999999999999987653
No 130
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.85 E-value=28 Score=30.98 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=61.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~-~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
|||.||.--..-+..+..++.. .++.+. .++...+..+.+.+.. ... ++.| ++.+-...++-+++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~-----------~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD-----------LEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS-----------HHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH-----------HHHHHHhhcCCEEE
Confidence 4677777666666666666655 345544 4443333333333222 133 4444 12221112344444
Q ss_pred Eec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHH
Q 005938 112 MSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa--~sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlrk 152 (668)
++. ..-.+.+.++++.|..=|+-||+ +.+++.++++.+-+.
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 443 33467788999999999999998 888988888766443
No 131
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=83.47 E-value=1 Score=42.08 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++++||+++|. +..+|.+.||+.+|+|++.
T Consensus 24 ~~~sl~~lA~~~g~-S~~~l~r~Fk~~~G~s~~~ 56 (127)
T PRK11511 24 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQ 56 (127)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45999999999987 6799999999999999974
No 132
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=82.86 E-value=1.5 Score=39.34 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=29.0
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|.++|+ +..+|.+.||+++|+|++.
T Consensus 20 ~~~~~~~lA~~~~~-S~~~l~r~f~~~~g~s~~~ 52 (107)
T PRK10219 20 QPLNIDVVAKKSGY-SKWYLQRMFRTVTHQTLGD 52 (107)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 35899999999998 5679999999999999974
No 133
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=82.05 E-value=16 Score=37.49 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=69.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPd-m-DG~ELLe~Ir 102 (668)
..-+|++. |.+..=...+..+|+..||+|.... ..++.++.+.+.+ ||+|.+-..|+. + +--+++++|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 34577777 7777777888889999999998644 4678888888776 999999988864 2 2344666776
Q ss_pred cc-CCCcEEEEeccCCHHHHHH---HHHcCCcEEEeCC
Q 005938 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (668)
Q Consensus 103 ~~-~~IPVIILSa~sd~e~a~k---Al~~GA~dYLlKP 136 (668)
+. .+++|++=-+--+.+.+.. +-..||+.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 4566555443344444332 2347998886643
No 134
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.04 E-value=20 Score=35.43 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdm--------DG~ELLe~Ir~~~~-IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
.+.+..++.+.... .+|+|.+.--.|.. .|++.++++++... +||++.-+- +.+.+.+++..||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566677666543 38999886544432 36888888865444 898877665 5788889999999998
Q ss_pred Ee
Q 005938 133 LI 134 (668)
Q Consensus 133 Ll 134 (668)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 74
No 135
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.78 E-value=18 Score=36.70 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=51.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~-------MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
..+.+.+++...... .+|+|.+... ......++++++++...++|||...+-.+.+.+.+++..||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 356677787665543 3888765321 112235788888876568999998888899999999999999887
Q ss_pred eC
Q 005938 134 IK 135 (668)
Q Consensus 134 lK 135 (668)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 64
No 136
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.60 E-value=18 Score=36.38 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~ 103 (668)
.-||++. |-+..=...+..+|+..||+|+... ..++.++.+++.+ ||+|-+-..|... +..++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578877 6777778889999999999987533 5678888888776 9999999877653 34456677764
Q ss_pred cC---CCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 104 ~~---~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.. +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555433333332 3556799888753
No 137
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.43 E-value=11 Score=33.58 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=55.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
+||||-........++..+++.|+..... .........+...-...|+||+=...-.=+-...+++..+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988777 222222222333223479998766544433444444444557899887
Q ss_pred EeccCCHHHHHHHH
Q 005938 112 MSADGRVSAVMRGI 125 (668)
Q Consensus 112 LSa~sd~e~a~kAl 125 (668)
.-.. ....+.+++
T Consensus 81 ~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 81 SRSR-GVSSLERAL 93 (97)
T ss_pred ECCC-CHHHHHHHH
Confidence 6533 333344443
No 138
>PRK15320 transcriptional activator SprB; Provisional
Probab=80.88 E-value=4.5 Score=41.72 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=91.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~--gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIIL 112 (668)
+|+|-.|.-...-.++.+++.. +..|.+|..-...|..++.. ||.+++=.--|..--+-+-......++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4778888877777888888765 56777888888888888764 675554333354433333222223467888888
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH-------------HHHHHHhhcccccccccCCcccc----------
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIW-------------QHVVRKRWNENKEHENSGSLEET---------- 169 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL-------------q~Vlrk~~~~~k~~e~~~~le~~---------- 169 (668)
+..--+....-.--.|+-+|++| +||..++ -+...+-.+..-.........+.
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQ 155 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhccc
Confidence 86554443333345788888886 3443333 33222111100000000000000
Q ss_pred -----cccCCCchhHHHHhhhccCCcchhhhhhhccc
Q 005938 170 -----DHHKRGSDEIEYASSVNEGTEGTFKAQRKRIS 201 (668)
Q Consensus 170 -----d~~klt~~Eie~lssv~eg~e~~vk~~~k~I~ 201 (668)
....++.+|++++..+.+|.....++....++
T Consensus 156 ~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS 192 (251)
T PRK15320 156 YAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLG 192 (251)
T ss_pred eeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 11346788999999999997776655555443
No 139
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=79.95 E-value=1.8 Score=43.82 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 256 v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
.+..+.+++|..||+ ++.|+++.||+.+|+||+.
T Consensus 95 ~~~~~le~la~~lg~-sp~~~~R~FK~~~G~Tp~~ 128 (187)
T COG2169 95 PEKRWLEELADELGV-SPSTLHRLFKAITGMTPKE 128 (187)
T ss_pred CCcccHHHHHHHhCC-ChHHHHHHHHHHhCCCHHH
Confidence 577789999999997 6799999999999999974
No 140
>PRK13503 transcriptional activator RhaS; Provisional
Probab=79.89 E-value=1.7 Score=44.64 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=29.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+|++++|+++|+ +..||++.||+.+|+|+..
T Consensus 186 ~~~tl~~lA~~~~l-S~~~l~r~Fk~~~G~S~~~ 218 (278)
T PRK13503 186 EEVNWEALADQFSL-SLRTLHRQLKQQTGLTPQR 218 (278)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHhCcCHHH
Confidence 47899999999987 6789999999999999963
No 141
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.67 E-value=9.6 Score=43.30 Aligned_cols=122 Identities=10% Similarity=0.092 Sum_probs=66.4
Q ss_pred cCCCCCCCccccccccCC-CCCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 005938 11 SGGSGYGSSRAADVAVPD-QFPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 11 ~gGs~~~~~~~~d~~~~e-~fP~girVLIVDDDp~i---re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD 86 (668)
+|.+|.|.+.+.--.... ....+.+|+|++-|+.- ...++.+.+..+..+..+.+..++.+.++.. .+|+||+|
T Consensus 229 vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLID 306 (432)
T PRK12724 229 VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILID 306 (432)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEe
Confidence 344566666644332211 13457799999988722 2234444444466666666667777777643 48999999
Q ss_pred C--CCCC-CCHHHHHHHH-hcc----CCCcEEEEeccCCHHHHHHHHH----cCCcEEEe
Q 005938 87 V--HMPD-MDGFKLLEHI-GLE----MDLPVIMMSADGRVSAVMRGIR----HGACDYLI 134 (668)
Q Consensus 87 I--~MPd-mDG~ELLe~I-r~~----~~IPVIILSa~sd~e~a~kAl~----~GA~dYLl 134 (668)
. .++. .+-++-+..+ +.. +.-.++++++....+.+.++++ .|.++.|.
T Consensus 307 TaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 307 TAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 6 2221 1223222222 211 2234677887776655555543 45566544
No 142
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.18 E-value=45 Score=31.95 Aligned_cols=103 Identities=16% Similarity=0.056 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCCcEEEEec
Q 005938 42 DITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVIMMSA 114 (668)
Q Consensus 42 Dp~ire~Lk~lL~~~gy~V~---tasng~EALelLre~~~~PDLVIlDI~MPd-mDG-~ELLe~Ir~~--~~IPVIILSa 114 (668)
+..=...+..+|+..||+|. .....++.++.+.++. +|+|-+...|.. +.. -++.+.+++. .+++|++ -+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv-GG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV-GG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE-EC
Confidence 34445678888998999987 3557788888888776 999998877754 333 3455666543 2555443 33
Q ss_pred c-----CC-HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 005938 115 D-----GR-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (668)
Q Consensus 115 ~-----sd-~e~a~kAl~~GA~dYLlKPis~eEL~~iLq 147 (668)
. .+ .+...+..++|++..+...-+++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 2 22 234556788999988887777777766553
No 143
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=76.11 E-value=25 Score=37.15 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=68.5
Q ss_pred HHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH
Q 005938 48 ILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 48 ~Lk~lL~~~gy~--V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~k 123 (668)
.|++.|..-... +........+.+++.... ||.|++|.+-...|--++...++. ...++.++=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 355666553222 222233346666666554 999999999888887777666652 34566676667788999999
Q ss_pred HHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 005938 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (668)
Q Consensus 124 Al~~GA~dYLlKPi-s~eEL~~iLq~V 149 (668)
+++.||.+.+.-=+ +.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999977444 577777776654
No 144
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=75.89 E-value=28 Score=37.16 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=68.0
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHH
Q 005938 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 48 ~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir--~~~~IPVIILSa~sd~e~a~k 123 (668)
.|++.|..-.. ..........+.+++.... ||.|++|.+-...|--++...++ ....+..++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35566655322 2222233346666666544 99999999888887777766665 234455566667788899999
Q ss_pred HHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 005938 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (668)
Q Consensus 124 Al~~GA~dYLlKPi-s~eEL~~iLq~V 149 (668)
+++.||.+.+.-=+ +.++.+++++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988555 567777766654
No 145
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=75.74 E-value=2.1 Score=44.56 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|.++|+ +..||.+.||+.+|+|++.
T Consensus 198 ~~isl~~lA~~~~l-S~~~l~r~Fk~~~G~tp~~ 230 (290)
T PRK10572 198 SEFDIESVAQHVCL-SPSRLAHLFRQQLGISVLR 230 (290)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 78999999999998 6799999999999999974
No 146
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=75.49 E-value=30 Score=36.42 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHH
Q 005938 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 49 Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~kA 124 (668)
|++.|..-. +.+........+.+++.... ||.|++|.+-..+|--++...++. ...++.++=....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 22223333346666666544 999999999888887777666652 345566666677889999999
Q ss_pred HHcCCcEEEeCCC-CHHHHHHHHHHH
Q 005938 125 IRHGACDYLIKPI-REEELKNIWQHV 149 (668)
Q Consensus 125 l~~GA~dYLlKPi-s~eEL~~iLq~V 149 (668)
++.||.+.+.-=+ +.++.+++++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999987444 567777776654
No 147
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=74.39 E-value=3.6 Score=42.62 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|+++|+ +..||.+.||+.+|+|+..
T Consensus 201 ~~~sl~~lA~~~~~-S~~~l~r~Fk~~~G~t~~~ 233 (287)
T TIGR02297 201 QHLRLPEYADRLGI-SESRLNDICRRFSALSPKR 233 (287)
T ss_pred cCCCHHHHHHHHCC-CHHHHHHHHHHHhCCCHHH
Confidence 36899999999987 6799999999999999864
No 148
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=73.49 E-value=16 Score=34.97 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH-----HHHHhcc
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL-----LEHIGLE 104 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~EL-----Le~Ir~~ 104 (668)
.-+|-+.+.||-+.........+|...+.+|+.-.... .+-... +|++|+.+-.+-.+-.-+ .+.+..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~~h--YD~~Ll~vavtfr~n~tm~~~~l~~Al~m- 80 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPPAH--YDMMLLGVAVTFRENLTMQHERLAKALSM- 80 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccChhh--hceeeecccccccCCchHHHHHHHHHHhh-
Confidence 44677899999999999999999998888886533222 222223 899999997765443333 233321
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 105 ~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
-+ -||+--.....-.+.+....|+.++|+||++...|...+
T Consensus 81 td-~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 81 TD-FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred hc-ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 12 233333334444577788999999999999998887643
No 149
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=72.94 E-value=32 Score=31.64 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCcEEEEeccCCH
Q 005938 43 ITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRV 118 (668)
Q Consensus 43 p~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir~-~~~IPVIILSa~sd~ 118 (668)
|.-...+..+|++.++.+... ...++.++.+... ..||+|.+.+..... ...++++.+|+ .++++||+--.+...
T Consensus 2 plgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~ 80 (127)
T cd02068 2 PLGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF 80 (127)
T ss_pred cchHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh
Confidence 344567788888888776543 3455666666552 249999999855544 35667788875 456666653333222
Q ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 119 e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
.....+..-..||+..---...+...++++
T Consensus 81 -~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 81 -FPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred -CHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 122224455668888765555555555554
No 150
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=72.86 E-value=35 Score=34.47 Aligned_cols=94 Identities=9% Similarity=0.141 Sum_probs=65.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
-+++|+.+++..++.++++++.+| |+|....+.+++++.++.....|.|+..+.+..+ .++-++..-.. .-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 368999999999999999999874 7899999999999988743334899999998866 44444332112 456655
Q ss_pred Eec-cCCHHHHHHHHHcCCcEEEeC
Q 005938 112 MSA-DGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 112 LSa-~sd~e~a~kAl~~GA~dYLlK 135 (668)
+-+ ..-...+. ..+||.+-
T Consensus 109 vvGg~gvp~evy-----e~aDynlg 128 (176)
T PRK03958 109 VVGAEKVPREVY-----ELADWNVA 128 (176)
T ss_pred EEcCCCCCHHHH-----hhCCEEec
Confidence 554 33333332 24577764
No 151
>PRK15340 transcriptional regulator InvF; Provisional
Probab=72.49 E-value=3.1 Score=43.07 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 230 HQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 230 g~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
-..+++.+..|++-.- |++-. ....+++++|.++|+ +..||++.||+++|+|++.
T Consensus 102 ~~~~~r~~e~y~l~~~----Ll~~~-~~~~sleeLA~~~gv-S~r~f~RlFk~~~G~tpk~ 156 (216)
T PRK15340 102 VLALLRKSESYWLVGY----LLAQS-TSGNTMRMLGEDYGV-SYTHFRRLCSRALGGKAKS 156 (216)
T ss_pred HHHHHHHHHHHHHHHH----HHhCc-cCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 3445555555554322 12211 356799999999998 6799999999999999873
No 152
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.31 E-value=18 Score=37.53 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd------~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
++++++++|...++|+++|+-++. ...+.++.++|+++.+.-....+++...++.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 566777777555789888776553 56688899999999999666677776666655
No 153
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=70.17 E-value=4.6 Score=42.21 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
|.+.+..+.+++.+||.++|. +..||.+.||+. |+|+..
T Consensus 206 I~~~l~~~~ls~~~lA~~~gi-S~r~L~r~Fk~~-G~T~~~ 244 (302)
T PRK09685 206 IDQSIQEEILRPEWIAGELGI-SVRSLYRLFAEQ-GLVVAQ 244 (302)
T ss_pred HHHhcCCCCCCHHHHHHHHCC-CHHHHHHHHHHc-CCCHHH
Confidence 456788899999999999998 479999999985 998853
No 154
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=69.97 E-value=61 Score=32.73 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=49.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.+.+++..+. +.. .|.|+++-.-.+ ...+++++++++..++||++.-+-...+.+.+++..||++...
T Consensus 108 ~v~~~~~~~~~~-~~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARKAE-AAG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHHHH-HcC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 344555554433 333 798887643211 2457788888766689999888877778899999999998766
Q ss_pred C
Q 005938 135 K 135 (668)
Q Consensus 135 K 135 (668)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 155
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=69.34 E-value=54 Score=33.20 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+..+.+.+.. .| ++++|+.--++ .| +++++++++..++|||.-.+-.+.+.+.++++.||++.++
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3344555555443 66 77788854332 22 6788888766789999888889999999999999999876
No 156
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=69.03 E-value=36 Score=36.61 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=48.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
...+.+.++|.+.+... +|+|++| +|+-.+-.+.++.++....-.+|-.|+--+.+.+.+-...|++-+
T Consensus 192 eVEv~tleea~ea~~~G---aDiI~lD-n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 192 TVEADTIEQALTVLQAS---PDILQLD-KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred EEECCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 35788999999988643 8999999 454444444555554322223566888888888888888888753
No 157
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=68.92 E-value=51 Score=34.57 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=66.9
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHH
Q 005938 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 49 Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~kA 124 (668)
|++.|+.-. +.+..........+++.... +|.|++|++-...|--++...|+. .....+++=....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 444554422 23333344456667666554 999999998877777777776653 234456665566777889999
Q ss_pred HHcCCcEEEe-CCCCHHHHHHHHHHH
Q 005938 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (668)
Q Consensus 125 l~~GA~dYLl-KPis~eEL~~iLq~V 149 (668)
++.||++.+. |--+.++.+++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999854 455788888777765
No 158
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=68.20 E-value=5.5 Score=42.48 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
+.+++.+||+++|+ +..||.+.||+.+|+|+..
T Consensus 206 ~~~tl~~lA~~~~~-S~~~l~r~Fk~~~G~t~~~ 238 (302)
T PRK10371 206 QALTINDVAEHVKL-NANYAMGIFQRVMQLTMKQ 238 (302)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHhCCCHHH
Confidence 67999999999987 6799999999999999863
No 159
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=67.83 E-value=5.4 Score=38.30 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=49.5
Q ss_pred cCCCCCCCccccccccCCCCCCccEEEEEeCCHHHHHHHHHHH----------HhCCCeEEEE----------CCHHHHH
Q 005938 11 SGGSGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQML----------RRCLYNVTTC----------SQAAVAL 70 (668)
Q Consensus 11 ~gGs~~~~~~~~d~~~~e~fP~girVLIVDDDp~ire~Lk~lL----------~~~gy~V~ta----------sng~EAL 70 (668)
+|..|.|++.........-.+.+.+|++++-|+.....+..++ ...++.+... ....+++
T Consensus 5 ~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATPEVI 84 (148)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHHHHH
Confidence 3445566555433332223456788988886642222111111 1112222222 1234666
Q ss_pred HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 005938 71 DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (668)
Q Consensus 71 elLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~ 115 (668)
+.++.. .+|+||+|. ++..- .....+ ...+..||+++..
T Consensus 85 ~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 85 RVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 666554 499999998 66542 222222 2345566666665
No 160
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=67.79 E-value=62 Score=39.24 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=74.3
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~ 103 (668)
..||+|. |.+..-...+..+|...||+|.. ..+.+++.+...+.. +|+|++-..+... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3466654 33344445677777778999853 345778888887765 8988877655432 24456777765
Q ss_pred cCCCcE-EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 104 EMDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 104 ~~~IPV-IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
...-.| |++.+.--.+......+.|+++|+..=.+..++...+++.+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 421123 445543223333556789999999988888887777666554
No 161
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.19 E-value=43 Score=33.74 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=61.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC-C-HHHHHHHHhcc
Q 005938 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE 104 (668)
Q Consensus 34 irVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPdm-D-G~ELLe~Ir~~ 104 (668)
-+|++. |.+..=...+..+|+..||+|+... ..++.++.+++.. ||+|-+-..|... . -.++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 355554 4445566677888888899998543 5578888888776 9999999877642 2 23456666644
Q ss_pred ---CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 105 ---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 105 ---~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+++|+ +-+..-.. .-+-+.||+.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 235544 44433222 2355779998864
No 162
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=66.83 E-value=1.3e+02 Score=29.43 Aligned_cols=113 Identities=14% Similarity=0.017 Sum_probs=71.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH----HHHH
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL----LEHI 101 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~---tasng~EALelLre~~~~PDLVIlDI~MPdmDG~EL----Le~I 101 (668)
..||+|. |-+..-.+.+.+.|+..||+|. ...+.+|+....-++. .|+|.+...= ....++ .+.+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~--g~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLD--GGHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEecc--chHHHHHHHHHHHH
Confidence 4566665 7777777889999999999987 4668889888876654 8877765421 223334 4444
Q ss_pred hccCCCcEE-EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 102 GLEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 102 r~~~~IPVI-ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
++.---.|+ +.-+.--.+...+..++|++.++.--....+...-+.+.
T Consensus 88 re~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 88 REAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred HHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 443222233 333333444455666799999988666666655544443
No 163
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.82 E-value=60 Score=28.80 Aligned_cols=92 Identities=17% Similarity=0.076 Sum_probs=55.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng-~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.+|++||.++...+.+ ...++.+...+-. .+.|+.+.-.. .+.||+...- +..-+.++..+++ .+..+||+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~~--a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIEK--ADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGGC--ESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCccc--cCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 6899999998764443 3335665543322 34555544443 8888887652 2334556666664 56677776
Q ss_pred EeccCCHHHHHHHHHcCCcEEEe
Q 005938 112 MSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLl 134 (668)
... +.++.......||+..+.
T Consensus 95 ~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EES--SHHHHHHHHHTT-SEEEE
T ss_pred EEC--CHHHHHHHHHCCcCEEEC
Confidence 553 455566667789877653
No 164
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.69 E-value=53 Score=35.60 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=46.9
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 59 ~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
....+.+.+++.+.+... +|+|.+| +|.-.+--+.++.++....-..|..|+--+.+.+.+-.+.|++-+
T Consensus 202 IeVEv~tl~ea~eal~~g---aDiI~LD-nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEG---AELVLLD-NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEEcCCHHHHHHHHHcC---CCEEEeC-CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 345789999999998643 8999999 343222223333333333333577888888888888888998754
No 165
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=66.66 E-value=8.8 Score=39.13 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=52.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCC--HHHHHHHHhccCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~--MPdmD--G~ELLe~Ir~~~~IP 108 (668)
+++||+||....+--.|.++|...+.+|.+..+....++.++... ||.|++.=- -|..- -.+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 368999999999999999999999988887776643334555444 899988632 23322 24445544 35678
Q ss_pred EEEE
Q 005938 109 VIMM 112 (668)
Q Consensus 109 VIIL 112 (668)
|+=+
T Consensus 77 iLGV 80 (191)
T COG0512 77 ILGV 80 (191)
T ss_pred EEEE
Confidence 7643
No 166
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=66.54 E-value=36 Score=36.81 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=61.9
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHhccC
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEM 105 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI---------------------------------~M--PdmDG~ELLe~Ir~~~ 105 (668)
.-|++.+||+..++.. +|+|=+-+ .. ....++++++++++..
T Consensus 117 AD~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 3577888998887654 78877665 00 1224789999997766
Q ss_pred CCcEE--EEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 005938 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (668)
Q Consensus 106 ~IPVI--ILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlrk 152 (668)
.+||| ...+-.+.+.+.++++.||+.++. +.-++.+....+..++.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 79997 566666899999999999999854 333455555555554443
No 167
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=66.34 E-value=5.5 Score=32.56 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 258 gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
.+++.+||.++|. +..+|.+.|++..|++++.
T Consensus 1 ~~~~~~la~~~~~-s~~~l~~~f~~~~~~s~~~ 32 (84)
T smart00342 1 PLTLEDLAEALGM-SPRHLQRLFKKETGTTPKQ 32 (84)
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHhCcCHHH
Confidence 3689999999998 5899999999999988864
No 168
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.24 E-value=27 Score=39.72 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCCCCccccccccCCCCCCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeC
Q 005938 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (668)
Q Consensus 14 s~~~~~~~~d~~~~e~fP~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~--~~PDLVIlDI 87 (668)
.|.|.+.+.-.....-...+.+|++++-|+. ..+.|+.+-+..++.+..+.+..+..+.++... ..+|+||+|.
T Consensus 250 tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4566665443332222345789999998874 334444444455777777777765555554332 1489999996
No 169
>PRK13502 transcriptional activator RhaR; Provisional
Probab=65.93 E-value=5.5 Score=41.28 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 258 gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
.++.+++|.++|+ +..|+.+.||+++|+|++.
T Consensus 192 ~~~~~~lA~~~~i-S~~~L~r~fk~~~G~t~~~ 223 (282)
T PRK13502 192 PFALDAFCQQEQC-SERVLRQQFRAQTGMTINQ 223 (282)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 4889999999987 6799999999999999974
No 170
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=65.23 E-value=53 Score=35.53 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred HHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHH
Q 005938 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 51 ~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~M-----PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kA 124 (668)
+.++..+..| ..+.+.++|..+.+. ..|.|++.-.- ....-++++.+++...++|||.--+-.+.+.+.++
T Consensus 103 ~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~a 179 (307)
T TIGR03151 103 PRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAA 179 (307)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH
Confidence 3344445544 356788888766554 38998885432 22235888888876667999988888899999999
Q ss_pred HHcCCcEEEeC
Q 005938 125 IRHGACDYLIK 135 (668)
Q Consensus 125 l~~GA~dYLlK 135 (668)
+..||++...=
T Consensus 180 l~~GA~gV~iG 190 (307)
T TIGR03151 180 FALGAEAVQMG 190 (307)
T ss_pred HHcCCCEeecc
Confidence 99999987663
No 171
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.08 E-value=24 Score=37.22 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.4
Q ss_pred CHHHHHHHHhcc-CCCcEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 93 DG~ELLe~Ir~~-~~IPVIILSa~sd------~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+.+++++.+|+. .++|+++|+-+.- ..++.++.++|+++.|.-....++....++.+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 457778888755 6899887776654 56788999999999999888888877666554
No 172
>PLN02591 tryptophan synthase
Probab=64.93 E-value=22 Score=37.50 Aligned_cols=58 Identities=9% Similarity=0.171 Sum_probs=45.1
Q ss_pred CHHHHHHHHhccCCCcEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~s------d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
+.+++++++|...++|+|+|+=++ ......+|.+.|+++.|+-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 468888888866789988887443 2344778889999999999899888887776653
No 173
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.82 E-value=22 Score=37.59 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=44.0
Q ss_pred CHHHHHHHHh-ccCCCcEEEEecc------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 93 DGFKLLEHIG-LEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 93 DG~ELLe~Ir-~~~~IPVIILSa~------sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+.+++++++| ...++|+|+|+=+ .-.....++.+.|+++.|+-.+..+|....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3578888887 5578999888833 3344588899999999999778888887776665
No 174
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.64 E-value=20 Score=38.02 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=44.3
Q ss_pred CHHHHHHHHhccCCCcEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~s------d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+.+++++++|...++|+|+||=+. -.....+|.+.|+++.|.-....+|....++.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 458888888866889988887443 345688999999999999888888877666655
No 175
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.57 E-value=1.2e+02 Score=31.88 Aligned_cols=89 Identities=16% Similarity=0.034 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhc-cC-CCcEEEEecc
Q 005938 42 DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGL-EM-DLPVIMMSAD 115 (668)
Q Consensus 42 Dp~ire~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI---~MPdmDG~ELLe~Ir~-~~-~IPVIILSa~ 115 (668)
++...+.+.....+.|..+ ..+.+.+|+...... .+|+|-+.- ..-..| ++...++.. .+ ..++|..++-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 3334444444445556664 467788888665543 378876542 122223 566666643 33 3588889999
Q ss_pred CCHHHHHHHHHcCCcEEEe
Q 005938 116 GRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 116 sd~e~a~kAl~~GA~dYLl 134 (668)
.+.+.+.++..+||+.++.
T Consensus 221 ~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999764
No 176
>PRK13500 transcriptional activator RhaR; Provisional
Probab=64.30 E-value=6.2 Score=42.10 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 258 gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
.++++++|+++|+ +.+||.+.||+.+|+|++.
T Consensus 222 ~isl~~lA~~~~i-S~~~L~r~FK~~tG~T~~~ 253 (312)
T PRK13500 222 PFALDKFCDEASC-SERVLRQQFRQQTGMTINQ 253 (312)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 4899999999987 7899999999999999974
No 177
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=64.10 E-value=6.6 Score=41.90 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|+++|++ .+||.+.||+.+|+|++.
T Consensus 233 ~~~sl~~lA~~~~~S-~~~l~r~fk~~~g~s~~~ 265 (322)
T PRK09393 233 EPHTVASLAARAAMS-PRTFLRRFEAATGMTPAE 265 (322)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHHH
Confidence 458999999999985 899999999999999964
No 178
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=63.65 E-value=1.4e+02 Score=30.03 Aligned_cols=76 Identities=14% Similarity=-0.004 Sum_probs=51.6
Q ss_pred hCCCeE-EEECCHHHHHHHHHHcCCCceEEEEe-CC--CCCCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcC
Q 005938 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSD-VH--MPDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHG 128 (668)
Q Consensus 55 ~~gy~V-~tasng~EALelLre~~~~PDLVIlD-I~--MPdmDG~ELLe~Ir~~--~~IPVIILSa~sd~e~a~kAl~~G 128 (668)
..+..+ ..+.+.+++.+..+. . +|.+.+- .. .. ..+++++++++.. .++|+|...+-.+.+.+.++++.|
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~~-g--~~~i~~t~~~~~~~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALAL-G--AKIIGINNRDLKTF-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHHc-C--CCEEEEeCCCcccc-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 345554 356677776665543 3 7877654 11 11 1245777888644 468999999999999999999999
Q ss_pred CcEEEe
Q 005938 129 ACDYLI 134 (668)
Q Consensus 129 A~dYLl 134 (668)
|++.++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999864
No 179
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=63.28 E-value=1.2e+02 Score=32.47 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=76.5
Q ss_pred CCccEEEEEeCCH-------HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCC--H---HH
Q 005938 31 PAGLRVLVVDDDI-------TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMD--G---FK 96 (668)
Q Consensus 31 P~girVLIVDDDp-------~ire~Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MPdmD--G---~E 96 (668)
...+|+=|+-|+. ...+.- +.|-+.||.|.- ..|..-|.++.+.. . -+++-+--|-.+ | -.
T Consensus 105 ~~wIKLEVi~D~~~LlPD~~etl~Aa-e~Lv~eGF~VlPY~~~D~v~a~rLed~G---c-~aVMPlgsPIGSg~Gl~n~~ 179 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPDPIGTLKAA-EFLVKKGFTVLPYINADPMLAKHLEDIG---C-ATVMPLGSPIGSGQGLQNLL 179 (267)
T ss_pred CCeEEEEEeCCCcccCCChHHHHHHH-HHHHHCCCEEeecCCCCHHHHHHHHHcC---C-eEEeeccCcccCCCCCCCHH
Confidence 4567887775443 223333 334456999864 34445554444322 1 234444334322 2 34
Q ss_pred HHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHH
Q 005938 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVR 151 (668)
Q Consensus 97 LLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL-----lKPis~eEL~~iLq~Vlr 151 (668)
.++.|++..++|||+=.+-...+.+.+|+++|+++.+ .|--++.++...+..++.
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 6777777889999999999999999999999999875 566788899888888765
No 180
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=63.16 E-value=29 Score=34.74 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=46.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG---FKLLEHIG 102 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~---V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG---~ELLe~Ir 102 (668)
-+|..||-++.....+++-++..+.. .....+...++..+......+|||++| -|-..+ .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD--PPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD--PPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC--CCcccchHHHHHHHHHH
Confidence 47999999999999999999987532 345678888887765444569999999 343333 44666664
No 181
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=63.06 E-value=6.2 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++++||.++|+ +..+|.+.||+.+|+|+..
T Consensus 20 ~~~~l~~lA~~~~~-S~~~l~r~F~~~~g~s~~~ 52 (289)
T PRK15121 20 QPLSLDNVAAKAGY-SKWHLQRMFKDVTGHAIGA 52 (289)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 46999999999998 5679999999999999874
No 182
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=62.78 E-value=57 Score=31.35 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=48.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~MPd--------mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+.+..++.+.... .+|.|+++-..|. ..|++.++++++..++||++..+- +.+.+.+++..|++.+..
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4556666665543 3899988644332 346788888876677898887665 467888999999998754
No 183
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.16 E-value=40 Score=38.15 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeCC--CCCCCHHHHHHHHh-
Q 005938 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDVH--MPDMDGFKLLEHIG- 102 (668)
Q Consensus 31 P~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~--~~PDLVIlDI~--MPdmDG~ELLe~Ir- 102 (668)
..+.+|.+|+-|+. ..+.|+.+-+..+..+..+.+..+..+.+.... ..+|+||+|.- .+. | -+.++.++
T Consensus 232 ~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~-d-~~~l~EL~~ 309 (407)
T PRK12726 232 KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL-A-EESVSEISA 309 (407)
T ss_pred HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc-C-HHHHHHHHH
Confidence 35689999998864 234555555555666666777776655554332 24899999972 221 2 23344442
Q ss_pred --c--cCCCcEEEEeccCCHHHHHHHH----HcCCcEEEeC
Q 005938 103 --L--EMDLPVIMMSADGRVSAVMRGI----RHGACDYLIK 135 (668)
Q Consensus 103 --~--~~~IPVIILSa~sd~e~a~kAl----~~GA~dYLlK 135 (668)
. .++.-++++++......+.+.+ ..+.+.+|.-
T Consensus 310 l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~T 350 (407)
T PRK12726 310 YTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIIT 350 (407)
T ss_pred HhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEE
Confidence 1 2333345566655554454443 2455565443
No 184
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=62.05 E-value=30 Score=37.01 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILS 113 (668)
.|.+.-.++.+...+..+|....|.+..+.++++.++.++.+++.+|.+|+..... -..+..++.+ ..-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEe
Confidence 45666677888899999998889999999999999999998888899999987543 3567777754 3457988886
Q ss_pred ccCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e--~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
...... .....+.....+.-++.-..++|-..+.+++.+-
T Consensus 79 ~~~s~~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 79 SSESASTTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp ---S--TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred cCcccccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 522100 0111122333344555556777776676666543
No 185
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=61.76 E-value=12 Score=33.12 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 256 v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..++++.+||.++|. +..+|.+.||+.+|+++.
T Consensus 34 ~~~~~l~~la~~~g~-S~~~l~r~f~~~~g~s~~ 66 (127)
T COG2207 34 AEPLTLEDLARRLGM-SRRTLSRLFKKETGTSPS 66 (127)
T ss_pred cCCCCHHHHHHHHCC-CHHHHHHHHHHHHCCCHH
Confidence 345899999999998 678999999999999986
No 186
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=61.74 E-value=88 Score=35.97 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 005938 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 42 Dp~ire~Lk~lL~~~g-y~V~tas------ng~EALelLre~~~~PDLVIlDI~MPdmD-G~ELLe~Ir~-~~~IPVIIL 112 (668)
.|.-+..|...|+..| ++|...+ +.++..+.+++.. ||+|.+-...+... ..++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5777888999998888 5776543 2234445566555 99999987666543 4567777764 467766653
Q ss_pred eccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 113 Sa~sd~e~a~kAl~-~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
-.+... ...+++. ....||+..--.++.+.+.++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 333332 2234453 4567899987777777777776543
No 187
>PRK12704 phosphodiesterase; Provisional
Probab=61.27 E-value=9.6 Score=44.25 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCc-EEEEeccCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 106 DLP-VIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 106 ~IP-VIILSa~sd~e--~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++| +|++|+++... .+..+++.++.|+..||++.+++...++.-+..
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 444 89999999877 889999999999999999999998887766543
No 188
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=61.05 E-value=48 Score=35.89 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=45.2
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVI--ILSa~sd~e~a~kAl~~GA~dYL-----lKPis~eEL~~iLq~Vlrk 152 (668)
-++++++++++...+||| ...+-.+.+.+..++++||+.++ .|.-++.+..+.+..++.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 488999999776779998 55666689999999999999975 4544666666666555544
No 189
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=60.48 E-value=45 Score=34.03 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=47.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCC
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVH 88 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~~--~~PDLVIlDI~ 88 (668)
+..|.+-+|.-||-++...+..++.++..++ .|. ...++.+.+..+.... ..||+|++|..
T Consensus 65 ~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 65 EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 3456677999999999999999999998875 343 5678888888776542 35999999985
No 190
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.97 E-value=1.4e+02 Score=34.76 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=53.3
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+-|+|+| ++|-..+.++.+-+.-+++...++++-+..+...+...+..-+..|-.+|++.+++...+++++..
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 36788887 566665666654333244555666655556677777889999999999999999999888887654
No 191
>PRK10130 transcriptional regulator EutR; Provisional
Probab=59.90 E-value=8.1 Score=42.49 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 252 eLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
+.+..+ +++.+||.++|. +.+++.+.||+++|+||..
T Consensus 251 ~~~~~~-ltv~~lA~~~gv-S~r~L~r~Fk~~~G~sp~~ 287 (350)
T PRK10130 251 ENMSEP-VTVLDLCNQLHV-SRRTLQNAFHAILGIGPNA 287 (350)
T ss_pred hhhcCC-CCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 444454 999999999987 6789999999999999964
No 192
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=59.57 E-value=77 Score=35.00 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=75.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHH
Q 005938 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~------~~gy~V--~tasng~EALelLre~~~~PDLVIlDI~MP-----dmDG~ELL 98 (668)
..+|+=|+.|+.....-+...++ +.||.| +++.+...|-.+..- . + +.++-+--| +..--+.+
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-G--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-C--C-EEEeeccccccCCCCCCCHHHH
Confidence 46788777776654443333333 238877 345566666555443 3 4 333321111 12234667
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlr 151 (668)
+.+.+..++|||+=.+-...+.+.+|+++||++.|+ |--++-.+.+++++++.
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 777666889999999999999999999999999764 56678888888877665
No 193
>PRK14974 cell division protein FtsY; Provisional
Probab=59.57 E-value=49 Score=36.42 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=53.0
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHHcCCCceEEEEeCCCCCCC--HHHHHH
Q 005938 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVHMPDMD--GFKLLE 99 (668)
Q Consensus 32 ~girVLIVDDDp---~ire~Lk~lL~~~gy~V~tasng-------~EALelLre~~~~PDLVIlDI~MPdmD--G~ELLe 99 (668)
.+.+|++++.|. ...+.|+.+....+..+.....+ .++++.++.. .+|+||+|.- +.. -.+++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa--Gr~~~~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA--GRMHTDANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CccCCcHHHHH
Confidence 468999998884 33445555555556555433221 2455555444 3899999973 221 233444
Q ss_pred HHh-----ccCCCcEEEEeccCCHHHHH--HHH--HcCCcEEEeC
Q 005938 100 HIG-----LEMDLPVIMMSADGRVSAVM--RGI--RHGACDYLIK 135 (668)
Q Consensus 100 ~Ir-----~~~~IPVIILSa~sd~e~a~--kAl--~~GA~dYLlK 135 (668)
.|+ ..++.-+.++.+....+... +.+ ..+.+..|+-
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 432 23555556666654433332 222 2566666543
No 194
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=59.56 E-value=1.6e+02 Score=29.92 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
-|++|+-....+.-|..+++.+. ..+|||. |... ...+-+..+..+++.++-+.++|.+.+..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 37766543323344666777764 4578775 2222 24455677888999999999999999988875
No 195
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=59.29 E-value=45 Score=33.77 Aligned_cols=66 Identities=9% Similarity=0.196 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC-CcEEEe
Q 005938 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PD-LVIlDI~MPd-mDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~G-A~dYLl 134 (668)
.+..+.+.+.. ++ ++++|+..-+ ..| +++++++++...+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 149 ~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45555555543 56 8888886433 234 6888888766679999988889999999999988 888775
No 196
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.35 E-value=40 Score=35.95 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=41.3
Q ss_pred CCCCCccccccccCCCCCCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH---HHHcCCCceEEEEeC
Q 005938 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI---LRERKGCFDVVLSDV 87 (668)
Q Consensus 14 s~~~~~~~~d~~~~e~fP~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALel---Lre~~~~PDLVIlDI 87 (668)
+|.|.+.........-...+.+|.+|+-|+. ....++...+..++.+..+.+..+..+. +... ..+|+||+|.
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt 162 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDT 162 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 4555555444322221234568888877654 3444455555557787776666443333 3332 2489999997
No 197
>PRK13501 transcriptional activator RhaR; Provisional
Probab=57.70 E-value=9.3 Score=39.95 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++.++|.++|+ +..||++.||+.+|+|+..
T Consensus 191 e~~sl~~lA~~~~l-S~~~l~r~Fk~~~G~T~~q 223 (290)
T PRK13501 191 AYFDMADFCHKNQL-VERSLKQLFRQQTGMSISH 223 (290)
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45799999999976 6799999999999999963
No 198
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.23 E-value=77 Score=33.98 Aligned_cols=90 Identities=11% Similarity=0.217 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-Hh---cc
Q 005938 36 VLVVDDDITCLRILEQMLR----RCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IG---LE 104 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~----~~gy---~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~-Ir---~~ 104 (668)
|||=|.+..+...+...++ ...+ ....+.+.+||++.++.. +|+|.+|= |+ ++.+++ ++ ..
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~G---aDiI~LDn----~~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAG---ADIVMCDN----MS-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEECC----CC-HHHHHHHHHHhhcc
Confidence 4444444444444444443 2232 234789999999998753 89999884 23 233333 22 11
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 105 MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 105 ~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
..-..|..++.-+.+.+.+..+.|++.+.
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 11235667888899999999999998653
No 199
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=57.14 E-value=1.3e+02 Score=28.05 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=68.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng--~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
..++++|+.+..... .+.......+. .+...... ++..++++. -|++++=... +.-|.-+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 346788887433322 24444444332 34444433 466666654 4787776555 445667777664 456
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+|+ +. .....+.+..+..+++..+.+.++|...+.+++...
T Consensus 118 pvI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 118 PVIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ceee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 7664 33 233556778888999999999999999999988754
No 200
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=56.91 E-value=1.3e+02 Score=31.83 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcE------EEeCCCCHHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~d------YLlKPis~eEL~~iLq~Vlrk 152 (668)
++.+.++++..++|||..-+-.+.+.+.+++..||+. ++.+|.-..++++-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3667777766679999988888999999999999885 566775555566655555544
No 201
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=56.84 E-value=78 Score=36.78 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=67.1
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeC--------C------CC
Q 005938 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDV--------H------MP 90 (668)
Q Consensus 32 ~girVLIVDDDp----~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI--------~------MP 90 (668)
++..|+++|--. ...+.++++=+.+ +..| ..+.+.++|..+++.. .|.|.+-+ + .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG---aD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG---VDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccCccccccCCC
Confidence 567788887543 1223333333332 2333 2578888988888643 79887642 1 23
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 91 dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
...-+..+.++.....+|||.=.+-.+...+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 334555666665556799999999999999999999999987653
No 202
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=56.11 E-value=53 Score=34.89 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHHcCCCceEEEEeC
Q 005938 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 31 P~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tas---ng-~---EALelLre~~~~PDLVIlDI 87 (668)
..+.+|+|||-|+. ..+.++.+.+..+..+.... +. . ++++..... .+|+||+|.
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT 162 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDT 162 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 35789999998863 23445555555565554332 22 2 333333333 499999997
No 203
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=56.07 E-value=90 Score=36.17 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=56.0
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeC--------------CCC
Q 005938 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (668)
Q Consensus 32 ~girVLIVDD----Dp~ire~Lk~lL~~~-gy~V~--tasng~EALelLre~~~~PDLVIlDI--------------~MP 90 (668)
++..+++||- .....+.++++-+.. ...|. .+.+.++|..++... .|.|.+.+ -.|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aG---ad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAG---ADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcC---CCEEEECCcCCcccccchhccCCCC
Confidence 4666777764 233333444443332 22322 255556666665533 67775543 223
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 91 dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+-+.-+.++....++|||.=-+......+.+|+.+||+....=
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 322222222222335688777667788889999999999987664
No 204
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.02 E-value=1.6e+02 Score=32.40 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=62.8
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCC----------CC-CCC--H
Q 005938 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVH----------MP-DMD--G 94 (668)
Q Consensus 35 rVLIVDDD----p~ire~Lk~lL~~~g-y~V~--tasng~EALelLre~~~~PDLVIlDI~----------MP-dmD--G 94 (668)
.+++||-- ....+.++++-+.+. ..|. .+.+.++|..+++.. .|.|.+-+. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG---ad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC---cCEEEECCCCCcccccccccCCCCCccH
Confidence 77888643 333333444433332 2232 477888888877643 788764321 11 112 4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..+..+++..++|||.--+-.....+.+|+.+||+....=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55677776556799998888889999999999999987664
No 205
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=55.96 E-value=92 Score=33.08 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=59.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++|+.+.+. ++.+++.++..+. .+.......+..+.+.. .|++++=.. .+.=|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 355666655432 2444555544332 23322222333333332 466664322 2223556666664 467887
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
. |.... ..+.+..|..+++..|-+.++|...+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33322 3455667888999999999999999988764
No 206
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.42 E-value=1.1e+02 Score=33.51 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=56.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL 97 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~---------------V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~EL 97 (668)
.++++||-|.+.-...+++.++..+.. |.......+....+.. -|++++--...+.-|.-+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 356666666654435566665554432 2222222233333321 477555221211123334
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 98 Le~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+|.+. ..+|||.--...+...+.+.+. ..+++..|-+.++|.+.+..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 44442 4678885322244444444432 12467778899999999988764
No 207
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.92 E-value=51 Score=35.58 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=58.5
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------------HHHcCCCceEEEEeCCCCCCCHH
Q 005938 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (668)
Q Consensus 34 irVLIV--DDDp~ir---e~Lk~lL~~~gy~V~tasng~EALel-------------Lre~~~~PDLVIlDI~MPdmDG~ 95 (668)
|+|.|+ -+.+... ..+...|...++.+.......+.+.. .......+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 567777 3334444 44444555567777654432222210 0111123688777 366773
Q ss_pred HHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 96 KLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 96 ELLe~Ir~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+++..+. ..++||+-+- .|-.+||. .++.+++...++++++..+
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 3344432 2478887543 35567877 6888999999999887654
No 208
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.79 E-value=2e+02 Score=28.27 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=61.1
Q ss_pred CccEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHHcCCCceEEEEeCC-----CCCCCHHHHHHH
Q 005938 32 AGLRVLVVDDDI--TCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEH 100 (668)
Q Consensus 32 ~girVLIVDDDp--~ire~Lk~lL~~~gy~V~----tasng~EALelLre~~~~PDLVIlDI~-----MPdmDG~ELLe~ 100 (668)
.|...+++.+.. .....+.+.+++.+..+. .+.+..++++.+. . ..|.|.+..- .....+.+.+++
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHH
Confidence 455666665543 233444455555555443 5557778777443 2 3798887421 112456777787
Q ss_pred HhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 101 Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
++...++||++.-+- +.+.+.++++.||+.++.
T Consensus 153 ~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 153 VKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 765467777655444 578899999999998754
No 209
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.72 E-value=1.2e+02 Score=32.16 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE------EeCCCCHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY------LlKPis~eEL~~iLq~Vlr 151 (668)
+++++++++..++|||..-+-.+.+.+.+.+..||+.. +..|.-..++++-+++.+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 67788887666899999999999999999999998643 3345444455544444443
No 210
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=54.41 E-value=88 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.031 Sum_probs=40.4
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 80 FDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 80 PDLVIlDI~MPdmDG-------~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.|.|.++-..+...+ ...+..++....+||+...+-.+.+.+.++++.||+.+..
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 788888877665332 2444555556789999888887778899999999987753
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.23 E-value=1.1e+02 Score=34.76 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCCCCccccccc-cCCC-CCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC
Q 005938 14 SGYGSSRAADVA-VPDQ-FPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (668)
Q Consensus 14 s~~~~~~~~d~~-~~e~-fP~girVLIVDDDp~i---re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~ 88 (668)
+|.|.+.+.--. .--. .-.+.+|.+|+-|+.- .+.|+.+-+..++.+..+.+..+....++... .+|+||+|.-
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~ 308 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTA 308 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCC
Confidence 466666543321 1111 2346899999998742 23344444444666767777777666666543 4899999962
Q ss_pred --CCC-CCHHHHHHHH-h-ccCCC-cEEEEeccCCHHHHHHHH----HcCCcEEEe
Q 005938 89 --MPD-MDGFKLLEHI-G-LEMDL-PVIMMSADGRVSAVMRGI----RHGACDYLI 134 (668)
Q Consensus 89 --MPd-mDG~ELLe~I-r-~~~~I-PVIILSa~sd~e~a~kAl----~~GA~dYLl 134 (668)
.+. ....+.+..+ + ....+ .++++++........+++ ..+....|.
T Consensus 309 G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~ 364 (424)
T PRK05703 309 GRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIF 364 (424)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 111 1223333333 3 11222 356777766655554443 234545543
No 212
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.09 E-value=70 Score=33.19 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.++.+.+.. .-.+|++|+..-++ .| +++++++.+..++|||+--+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44455544432 23799999976553 33 6677888766789999988889999999999999999876
No 213
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=53.67 E-value=79 Score=28.32 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=48.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHh-ccC-CCcEEE
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIM 111 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir-~~~-~IPVII 111 (668)
|.++.-...+..+++..++++.... ...+..+.+...+ ||+|.+...+... ..++.+..++ ..+ +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~--pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED--ADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC--CCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 5667777888889999999987543 5566777777655 9999999877553 3455555654 344 566655
No 214
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=53.49 E-value=1.4e+02 Score=33.36 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=62.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++||.|.+. ++.|+++.... .|.. .-..++..+.+.. -|++++=.. .+.=|+.++|.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEE
Confidence 467777766553 34455554432 2332 2233555555543 477775332 2233555666664 468888
Q ss_pred EEeccCCHHHHHHHHHc---CCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~---GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.-. ... ..+.+.. |-.+++..|-+.++|.+.+..++.
T Consensus 360 ~s~-~gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AAR-AGG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcC-CCC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 533 222 3344556 889999999999999999988764
No 215
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=52.60 E-value=73 Score=32.89 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+.++.+... .-.++++|+..-++ .| +++++++.....+|||+--+-.+.+.+.++++.||+..+.
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 355666666554 13699999976543 22 6778888766789999988899999999999999998875
No 216
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=52.60 E-value=11 Score=38.94 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=27.1
Q ss_pred CCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 259 LTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 259 Lti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
.+..++|.++|+ ++.||.+.||+.+|+|++.
T Consensus 189 ~~l~~lA~~~~~-s~~~l~r~fk~~~G~t~~~ 219 (278)
T PRK10296 189 SALENMVRLSGK-SQEYLTRATRRYYGKTPMQ 219 (278)
T ss_pred hhHHHHHHHhCC-CHHHHHHHHHHHHCcCHHH
Confidence 368899988887 7799999999999999974
No 217
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=52.58 E-value=2e+02 Score=31.43 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=62.0
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 33 GLRVLVVDDDI--------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 33 girVLIVDDDp--------~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
.++++||.|.+ ...+.++++....+..|.... ..++..+.+.. -|++++-....+.=|.-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 35667765432 233344444444444444333 23444454443 47877643332333455566553
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHH
Q 005938 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 103 ~~~~IPVIILSa~sd~e~a~kAl~~GA~dY-LlKPis~eEL~~iLq~Vlr 151 (668)
..+|||. |.... ..+.+..|.++| +..|.+.++|.+.+.+++.
T Consensus 300 --~G~PVI~-s~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLA-STKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEE-eCCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 4688875 33322 334566788899 5578999999999988764
No 218
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.17 E-value=87 Score=33.85 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=47.3
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 59 ~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
....+.+.++|.+.++.. +|+|++|- |+-.+--++.+.++....-.++-.|+--+.+.+.+-...|++-.
T Consensus 192 IeVEv~tleqa~ea~~ag---aDiI~LDn-~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 192 IVVEADTPKEAIAALRAQ---PDVLQLDK-FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred EEEECCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 345788999999998754 89999994 44333334444443222233566788888888888888887654
No 219
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.06 E-value=1.2e+02 Score=35.02 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=62.2
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 005938 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (668)
Q Consensus 32 ~girVLIVDDD----p~ire~Lk~lL~~~-gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPd------------m 92 (668)
.+++++++|.. ..+...++.+-... .. .+..+.+.++|..+++.. .|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCccccceeecCCCc
Confidence 57888988864 12333444444333 22 234677888888887653 68876532 122 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 93 DG~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.-++++..++ ....+|||.=-+-.....+.+|+.+||+....
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 1244554443 23468888777788889999999999997665
No 220
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.28 E-value=2.7e+02 Score=30.10 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=60.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCC
Q 005938 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~------gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~--~~I 107 (668)
|||-|++..+. .+...+... .-....+.+.+++.+.+... +|+|.+|=..|+ +--++.+.++.. ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 77778876555 566666532 11234789999999998754 799999965443 223333444322 123
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
..|..|+--+.+.+.+..+.|++-+
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3577788888888888889998754
No 221
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=51.25 E-value=1.2e+02 Score=35.25 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=47.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~IPV 109 (668)
.++.|++||.|+...+.+++ .++.+...+ .-.+.++...-. +.|.|++-+.=.+.+ ..++..++ ..++.+|
T Consensus 439 ~g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~~~-~~iv~~~~~~~~~~~i 511 (558)
T PRK10669 439 AGIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGYEA-GEIVASAREKRPDIEI 511 (558)
T ss_pred CCCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChHHH-HHHHHHHHHHCCCCeE
Confidence 35667777777765444432 355554332 123444444333 367666654322211 22334444 3466777
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEE
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYL 133 (668)
|.-.. +.+......+.||+..+
T Consensus 512 iar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 512 IARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred EEEEC--CHHHHHHHHHcCCCEEE
Confidence 76553 34445555678887544
No 222
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.10 E-value=86 Score=30.85 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=53.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~--gy~V~tas-------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
.+.+|.++-..+...+.+.+.|+.. +..+..+. +..+.++.+.... ||+|++-+-+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4789999999999999988888875 34443321 1223466777665 99999999999865 3445554
Q ss_pred ccCCCcEEEEe
Q 005938 103 LEMDLPVIMMS 113 (668)
Q Consensus 103 ~~~~IPVIILS 113 (668)
.....++++-.
T Consensus 121 ~~l~~~v~~~v 131 (171)
T cd06533 121 DRLPVPVAIGV 131 (171)
T ss_pred HHCCCCEEEEe
Confidence 44455665543
No 223
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=50.96 E-value=1.2e+02 Score=27.37 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=14.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE
Q 005938 39 VDDDITCLRILEQMLRRCLYNVTT 62 (668)
Q Consensus 39 VDDDp~ire~Lk~lL~~~gy~V~t 62 (668)
-|.+......+.+.|...||.+..
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEE
Confidence 355555555555666667888754
No 224
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=50.05 E-value=1.2e+02 Score=32.43 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=60.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~tas---ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
.++++||.|-+. ++.+++..+..+. .|.... +..+.+..+-.. .|++++--.. +.=|+-+++.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~---~d~~v~~s~~-Egf~~~~lEAma--~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN---VSALLLTSKF-EGFPMTLLEAMS--YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc---CcEEEECCcc-cCcChHHHHHHH--cCC
Confidence 456666655443 3444555544332 333322 222222221111 3666543221 222566666664 468
Q ss_pred cEEEEec-cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 108 PVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 108 PVIILSa-~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|||. |. ... ..+.+..|.++++..|-+.++|.+.+..++...
T Consensus 283 Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 8874 32 222 445677899999999999999999999886543
No 225
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=50.02 E-value=1.1e+02 Score=31.25 Aligned_cols=100 Identities=23% Similarity=0.314 Sum_probs=54.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC-------------eEEEECCHHHHHHHHHHc-CCCceEEEEeCC-CCCCCHHHH
Q 005938 35 RVLVVDDDITCLRILEQMLRRC--LY-------------NVTTCSQAAVALDILRER-KGCFDVVLSDVH-MPDMDGFKL 97 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~--gy-------------~V~tasng~EALelLre~-~~~PDLVIlDI~-MPdmDG~EL 97 (668)
+-.||..=+..++.+++++.-+ |+ .|..+.+.++|++.+++. ...|-+|-+|.+ -|+.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 4677877788888888888632 22 278899999999988863 235999999998 355446665
Q ss_pred HHHHhccCCCcEEEEe--ccCCHHHHHHHHHcCCcEEEeCCCCH
Q 005938 98 LEHIGLEMDLPVIMMS--ADGRVSAVMRGIRHGACDYLIKPIRE 139 (668)
Q Consensus 98 Le~Ir~~~~IPVIILS--a~sd~e~a~kAl~~GA~dYLlKPis~ 139 (668)
+++.-...+-|++++- +..-.+.++ ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 5554334556665554 444444443 357899999853
No 226
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.52 E-value=1.6e+02 Score=33.53 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCC--------------
Q 005938 31 PAGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHM-------------- 89 (668)
Q Consensus 31 P~girVLIVDDD----p~ire~Lk~lL~~~-gy~--V~tasng~EALelLre~~~~PDLVIlDI~M-------------- 89 (668)
.++..|++||-- ....+.++++=..+ ... +.-+.+.++|..+++.. .|.|..-+--
T Consensus 163 ~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG---aD~I~vG~g~Gs~c~tr~~~g~g~ 239 (404)
T PRK06843 163 KAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG---ADCLKVGIGPGSICTTRIVAGVGV 239 (404)
T ss_pred hcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC---CCEEEECCCCCcCCcceeecCCCC
Confidence 367788888752 22333333332222 222 23577888888887643 7988754311
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 90 PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 90 PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
|..+-+..+.++.....+|||.=-+..+...+.+|+.+||+....
T Consensus 240 p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 240 PQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred ChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 222222233333334578999888888999999999999998765
No 227
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=49.43 E-value=1.7e+02 Score=30.54 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC-CcEEEe------C
Q 005938 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------K 135 (668)
Q Consensus 67 ~EALelLre~~~~PD-LVIlDI~MPd-mDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~G-A~dYLl------K 135 (668)
.+..+.+.+.. .| |+++|+.--+ +.| +++++++++..++|||..-+-.+.+.+.++++.| |+..+. +
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 34444444433 67 4555542211 122 5788888777789999988899999999999988 877443 3
Q ss_pred CCCHHHHHHHHH
Q 005938 136 PIREEELKNIWQ 147 (668)
Q Consensus 136 Pis~eEL~~iLq 147 (668)
-++.+++++.++
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 355555554443
No 228
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=49.35 E-value=2.4e+02 Score=29.11 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=62.8
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 33 girVLIVDDDp---~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
.++++|+.+.+ ...+.+.+.+...+. .|......++..+.+.. .|++|+=..-++.-|.-+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 45666665443 233334444444332 34444443444444432 47776643234445666777664 467
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|||. +.... ..+.+..+.++++..|-+.++|.+.+..++.
T Consensus 290 PvI~-~~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIA-SDHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEE-cCCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8875 33222 3455677778999999999999999865543
No 229
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.20 E-value=1.5e+02 Score=33.54 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=59.9
Q ss_pred cEEEEEeC---CHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 34 LRVLVVDD---DITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 34 irVLIVDD---Dp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
++++|+.+ ++...+.++++++..+. .|.... ..+..+.+.. .|++++-.. .+.-|+.+++.+. ..+|
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~-~Eg~p~~vlEAma--~G~P 396 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSI-SEGQPLVILEAMA--AGIP 396 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCch-hhcCChHHHHHHH--cCCC
Confidence 45555532 23444455555544432 333333 2233333321 577776543 2233556666653 4678
Q ss_pred EEEEeccCCHHHHHHHHHc------CCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~------GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
||. |.... ..+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 397 VVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 775 43333 3344444 778999999999999999988764
No 230
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=49.02 E-value=2e+02 Score=31.17 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----CCe--E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 005938 36 VLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~----gy~--V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~ 106 (668)
|||=|.+....-.++..+++. ++. | .++.+.+++.+++... +|+|++|=.-| -++-+.++. ...
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDNm~~----e~~~~av~~l~~~~ 233 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDNMSP----EELKEAVKLLGLAG 233 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecCCCH----HHHHHHHHHhccCC
Confidence 566666665555577777643 432 2 3788999999998764 89999995433 233333322 233
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcE
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~d 131 (668)
-.++=.|+.-+.+.+...-..|++-
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~ 258 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDV 258 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCE
Confidence 3345578888888888777888764
No 231
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.97 E-value=1.9e+02 Score=32.05 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=60.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~-gy~V~-tasng~-EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
..+||.||.- -.-...+..+.+.. ++++. .++... .|-+..++.. .. +..|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCCH-------HHHh----cCCCEE
Confidence 4588999987 44444444443332 45554 454434 4444433322 11 22222 2232 234555
Q ss_pred EEEEec----cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa----~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+|.+.+ ..-.+.+.+|++.|..=++-||+..+|..++++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555521 3457889999999999999999998777777666543
No 232
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.65 E-value=2e+02 Score=29.91 Aligned_cols=89 Identities=6% Similarity=-0.029 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CCcEEEEec
Q 005938 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSA 114 (668)
Q Consensus 45 ire~Lk~lL~~~gy~V~tasng---~EALelLre~~~~PDLVIlDI~MPdm------DG~ELLe~Ir~~~-~IPVIILSa 114 (668)
....+...+.+.|..+..+-+. .+.++.+.... ..++++ -.+|+- +-.+.++++|+.. +.||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445556666777765543333 34444444333 577777 445552 2244566666443 567665555
Q ss_pred cCCHHHHHHHHHcCCcEEEeCC
Q 005938 115 DGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 115 ~sd~e~a~kAl~~GA~dYLlKP 136 (668)
-.+.+.+.++.+.||+.++.=.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 5577888888999999999864
No 233
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.61 E-value=2.4e+02 Score=29.75 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=61.6
Q ss_pred CccEEEEEeCCHH-HHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCCCC---------CHHHHH
Q 005938 32 AGLRVLVVDDDIT-CLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMPDM---------DGFKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~-ire~Lk~lL~~~gy~V~-tas--ng~EALelLre~~~~PDLVIlDI~MPdm---------DG~ELL 98 (668)
.|..-+|+-|.+. ....+...+++.+.... .+. +..+-++.+.+....+..++. + + +. +-.+.+
T Consensus 114 aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i 190 (256)
T TIGR00262 114 VGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELV 190 (256)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHH
Confidence 4566666656553 44455555566665533 222 223444444444433555544 2 1 22 245677
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
+++|+..+.||++=.+-.+.+.+.++.++||+..+.-.
T Consensus 191 ~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 191 KRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 77776667887775556678999999999999999864
No 234
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=48.55 E-value=63 Score=34.09 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=50.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH---------
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTC-------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL--------- 97 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~ta-------sng~EALelLre~~~~PDLVIlDI~MPdmDG~EL--------- 97 (668)
|||||+...-.+-..|...|...+++|... .+.++..+.++..+ ||+||-=.-+...+..|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 799999999999999999999888887765 25556667777666 999886554433222221
Q ss_pred ------HHHHhccCCCcEEEEecc
Q 005938 98 ------LEHIGLEMDLPVIMMSAD 115 (668)
Q Consensus 98 ------Le~Ir~~~~IPVIILSa~ 115 (668)
+.++.....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 111112357899999975
No 235
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.91 E-value=20 Score=38.05 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=43.3
Q ss_pred cCCCCCCCccccccccCCCCCC--ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 11 SGGSGYGSSRAADVAVPDQFPA--GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 11 ~gGs~~~~~~~~d~~~~e~fP~--girVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
.|.+|.|.+.+.--....-... +.+|.+|+-|+. ..+.+..+-+..+..+..+.+..+..+.++... .+|+||+
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vli 278 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILI 278 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEE
Confidence 3335666665433221111112 378999988873 233343433334566666777776666666543 4899999
Q ss_pred eC
Q 005938 86 DV 87 (668)
Q Consensus 86 DI 87 (668)
|.
T Consensus 279 Dt 280 (282)
T TIGR03499 279 DT 280 (282)
T ss_pred eC
Confidence 95
No 236
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=47.60 E-value=2.1e+02 Score=28.90 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+.++.+.+.. .| ++++|+..-++ --+++++++++..++|||.-.+-.+.+.+.++++.||++.++
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555442 44 66777744322 226888888776789999988888889899999999999765
No 237
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.53 E-value=92 Score=33.95 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred CCccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeCC--CCCCC-HHHH
Q 005938 31 PAGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH--MPDMD-GFKL 97 (668)
Q Consensus 31 P~girVLIVDDDp~ir---e~Lk~lL~~~gy~V~tas---ng----~EALelLre~~~~PDLVIlDI~--MPdmD-G~EL 97 (668)
+.+.+|+|++-|+.-. +.+...-...+..+.... +. .+++...... .+|+||+|.- ++..+ -++-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~--~~D~ViIDTaGr~~~~~~l~~e 217 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKAR--GIDVLIIDTAGRLHNKTNLMEE 217 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCCcCCHHHHHH
Confidence 4578999999886332 223333334455554332 22 2334333333 4999999972 33222 2222
Q ss_pred HHHHhc--------cCCCcEEEEeccCCHHHHHHH
Q 005938 98 LEHIGL--------EMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 98 Le~Ir~--------~~~IPVIILSa~sd~e~a~kA 124 (668)
++.+.. .++-.++++.+....+...++
T Consensus 218 L~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 218 LKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred HHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 333311 133346667776555444444
No 238
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.43 E-value=1.6e+02 Score=30.76 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=59.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
.+++|+.+.+. ...+++++...+. .|.......+..+.+.. .|++++=.. .+.-|+-+++.+. ..+|||.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 45555544332 2334444444322 24433333333333322 467665433 2334566666654 4688776
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|... ...+.+..|..+|+.+|-+.++|.+.+..++.
T Consensus 300 -s~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 -SNAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -eCCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 3222 24556778889999999999999998887764
No 239
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.23 E-value=2e+02 Score=31.46 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=57.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 005938 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (668)
Q Consensus 32 ~girVLIVDD----Dp~ire~Lk~lL~~~g-y~V~--tasng~EALelLre~~~~PDLVIlDI~MPd------------m 92 (668)
.+.+++++|- .....+.++.+-+... ..|. .+.+.+.|..+++.. .|.|.+.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aG---aD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAG---ADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcC---CCEEEECC-CCCcCcccceeCCCCC
Confidence 4677777763 2333444444433321 3332 466777777776533 78887632 111 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 93 DG~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.-+.++..+. ...++|||.--+-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 1223333332 22468888665677888999999999998765
No 240
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.85 E-value=2.3e+02 Score=29.25 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=56.3
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHc
Q 005938 51 QMLRRCL-YNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRH 127 (668)
Q Consensus 51 ~lL~~~g-y~V~tasng~EALelLre~~~-~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~ 127 (668)
+.|...+ .-|....+.++|++.++.... .+++ +++-+-.-++++.++.+++. +++ +|-.-.-.+.+.+.+|++.
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~--iEitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPV--LEVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCE--EEEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHc
Confidence 3444433 456677788888887775432 2564 44445555799999999743 443 3333334556889999999
Q ss_pred CCcEEEeCCCCHHHHHH
Q 005938 128 GACDYLIKPIREEELKN 144 (668)
Q Consensus 128 GA~dYLlKPis~eEL~~ 144 (668)
||+ |++-|.-..++.+
T Consensus 87 GA~-FivsP~~~~~vi~ 102 (212)
T PRK05718 87 GAQ-FIVSPGLTPPLLK 102 (212)
T ss_pred CCC-EEECCCCCHHHHH
Confidence 996 6666754444443
No 241
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=46.84 E-value=1.8e+02 Score=28.71 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=38.7
Q ss_pred CHHHHHHHHhccCCCcEEE-EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVII-LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
-|++.+++|++....|+.+ +..++..+++..+.+.||+..++-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 5889999998656667633 55566777888999999999877655445554444
No 242
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.66 E-value=1.5e+02 Score=32.03 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 005938 36 VLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~----~g--y~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~I 107 (668)
|||=|.+-...-.+.+.+.. .+ ..| .++.+.+||.+.+... +|+|.+|- |.-.+--+.++.++. .+.+
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~G---aD~I~LDn-~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEYG---ADIIMLDN-MPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHHHHhcCCCe
Confidence 55555554443334444432 23 223 4788999999988643 89999993 322222223333432 3444
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
+ |..++--+.+.+.+....|++..-
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 4 556667788888888899987653
No 243
>PLN02591 tryptophan synthase
Probab=45.98 E-value=2.5e+02 Score=29.69 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=65.7
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEE-E-CCH-HHHHHHHHHcCCCceEEEEeCCCC--C------CCHHHHHH
Q 005938 32 AGLR-VLVVDDDITCLRILEQMLRRCLYNVTT-C-SQA-AVALDILRERKGCFDVVLSDVHMP--D------MDGFKLLE 99 (668)
Q Consensus 32 ~gir-VLIVDDDp~ire~Lk~lL~~~gy~V~t-a-sng-~EALelLre~~~~PDLVIlDI~MP--d------mDG~ELLe 99 (668)
.|+. |+|.|-.......+...+++.+..... + .+. ++=++.+.... .+.|-+=-.+. + .+-.++++
T Consensus 105 aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~ 182 (250)
T PLN02591 105 AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQ 182 (250)
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHH
Confidence 3443 566666666667777777777765442 3 222 33345555444 44443211111 1 12345677
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 100 ~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
++|+..++||++=.+-.+.+.+.+..++||++.+.-.
T Consensus 183 ~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 183 ELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 8887789999988888889999999999999999865
No 244
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=45.68 E-value=25 Score=35.43 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD 86 (668)
|||||..-.+-..|...|++.++.+.++...+..++.+.... ||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMK--PDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCC--CCEEEEC
Confidence 899999999999999999998888877665543344444333 8877763
No 245
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.75 E-value=2.2e+02 Score=29.51 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-CCcEEEe------
Q 005938 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI------ 134 (668)
Q Consensus 67 ~EALelLre~~~~PD-LVIlDI~M----PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~-GA~dYLl------ 134 (668)
.+..+.+.+.. ++ |+++|+.- .+.| +++++++++..++|||.--+-.+.+.+.++++. ||++.+.
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGYD-LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 34444444432 54 67767542 2222 677888876678999988888899999999975 9988765
Q ss_pred CCCCHHHHHHHHH
Q 005938 135 KPIREEELKNIWQ 147 (668)
Q Consensus 135 KPis~eEL~~iLq 147 (668)
.-++.++++..+.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T PRK02083 233 GEITIGELKAYLA 245 (253)
T ss_pred CCCCHHHHHHHHH
Confidence 3455666655443
No 246
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.50 E-value=63 Score=33.65 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=33.9
Q ss_pred CCCcEEEEec------cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 105 MDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 105 ~~IPVIILSa------~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
-.+|||+|+= +.+..++..|-+.||.+||.-.+.+||-...-
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~R 141 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLR 141 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHH
Confidence 3589998874 45778899999999999999988888865433
No 247
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=44.34 E-value=2.7 Score=42.07 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=71.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005938 37 LVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (668)
Q Consensus 37 LIVDDDp~ire~Lk~lL~~~gy----~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IPV 109 (668)
+.+||+...+..+..++....+ .........+....... ..+|+++.++.||++++++++.++.. ..++++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 7777777766666665554311 11111211110000000 23899999999999999999888753 245566
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
+++............+..++.+|+.||....++...+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 137 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVR 137 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCcccc
Confidence 66666666665777788889999999998777766666553
No 248
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=44.04 E-value=1.6e+02 Score=31.96 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=53.2
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-----CC-CC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 005938 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 52 lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~-----MP-dm-DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~k 123 (668)
.+...+..| ..+.+.++|..+++.. +|.|++-=. .. .. +-+.|+.+++...++|||.--+-.+-..+..
T Consensus 131 ~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaa 207 (330)
T PF03060_consen 131 RLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAA 207 (330)
T ss_dssp HHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHH
T ss_pred HHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHH
Confidence 344445544 5899999999877653 899887631 22 22 3577788887777899999888889999999
Q ss_pred HHHcCCcEEEeC
Q 005938 124 GIRHGACDYLIK 135 (668)
Q Consensus 124 Al~~GA~dYLlK 135 (668)
++.+||++...=
T Consensus 208 al~lGA~gV~~G 219 (330)
T PF03060_consen 208 ALALGADGVQMG 219 (330)
T ss_dssp HHHCT-SEEEES
T ss_pred HHHcCCCEeecC
Confidence 999999998753
No 249
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=43.25 E-value=1.7e+02 Score=32.96 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=64.8
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEE-----------------------CCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 005938 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~----V~ta-----------------------sng~EALelLre~~~~PDLVIlDI~MPdm 92 (668)
+++...++.+++.++..+|. |..+ -+.++++++++.....++|+.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56677778888888766442 3322 23478888777643337888777656655
Q ss_pred CHHHHHHHHhccC--CCcEEEEecc---CCHHHHHHHHHcCCcEE-EeCCCCHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREEELKNIWQ 147 (668)
Q Consensus 93 DG~ELLe~Ir~~~--~IPVIILSa~---sd~e~a~kAl~~GA~dY-LlKPis~eEL~~iLq 147 (668)
| ++-.++|+... .+|| +... .+...+.++++.+++++ ++||-..--|..+++
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 5 55556665443 4554 3332 35778888998887665 679876554444444
No 250
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.11 E-value=1.1e+02 Score=30.76 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=45.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHH
Q 005938 82 VVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (668)
Q Consensus 82 LVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl--KPis~eEL~~iLq~V 149 (668)
|=++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 33444444334567888888776789999865555666788999999999873 223445666655544
No 251
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=42.44 E-value=1.4e+02 Score=30.77 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+..+.+.... ..+|++|+.--++ .| +++++++.+...+|||.--+-.+.+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3444555554433 4799999976543 33 7888998776789999887888999999999999998775
No 252
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.43 E-value=1.5e+02 Score=29.04 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=52.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~--gy~V~tasn-------g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
.+.+|.++-..+...+.+...|... +..+.-+.+ .++.++.+.... ||+|++-+-+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999999998875 445543332 345556666655 99999999999754 3455555
Q ss_pred ccCCCcEEE
Q 005938 103 LEMDLPVIM 111 (668)
Q Consensus 103 ~~~~IPVII 111 (668)
..-..++++
T Consensus 123 ~~l~~~v~i 131 (172)
T PF03808_consen 123 QRLPAGVII 131 (172)
T ss_pred HHCCCCEEE
Confidence 444555444
No 253
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=42.23 E-value=1.8e+02 Score=28.55 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=48.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcE
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPd--------mDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~d 131 (668)
.+|.+.+++.+..+. .+|+|.++-..+. ..|++.++.+... +++||+.+-+- +.+.+.+++..|+++
T Consensus 101 ~s~h~~~e~~~a~~~---g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEAE---GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 356677777664432 3899987654432 2378998888643 46897777555 578888999999988
Q ss_pred EEe
Q 005938 132 YLI 134 (668)
Q Consensus 132 YLl 134 (668)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 654
No 254
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=42.18 E-value=72 Score=35.03 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=46.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC---eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 35 RVLVVDDDITCLRILEQMLRRC--LY---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~--gy---~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
.|+++|-|..+.+.=+.++... +| +| ....+|...++.+.++. +|+||+|+.=|.+.+..+.++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCccchHHHHHHH
Confidence 4777877777777766666643 44 23 34558888888876655 999999999999888776544
No 255
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.13 E-value=96 Score=32.20 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=36.6
Q ss_pred HHHHHHhccCCCcEEEEe-----ccCCHHHHHHHHHcCCcEEEeC--CCC-HHHHHHHHHHH
Q 005938 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (668)
Q Consensus 96 ELLe~Ir~~~~IPVIILS-----a~sd~e~a~kAl~~GA~dYLlK--Pis-~eEL~~iLq~V 149 (668)
++++.++...++|+++|+ .++-..++.++.+.|++..+.- |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 567777766788987664 3344455788999999999985 343 45666555544
No 256
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.06 E-value=77 Score=31.54 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=57.1
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 36 VLVVDDDITCLRILEQMLRR----C--LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~----~--gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
|||=|.+-.+...+.+.++. . .. ....+.+.+++.+.++.. +|+|.+|-.-|+ +--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 45555554444444444432 1 22 334788999999988754 899999975442 2333444444434446
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
.|..|+--+.+.+.+-.+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7788888888888888899976553
No 257
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=41.72 E-value=2.3e+02 Score=29.13 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=61.2
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeC------CCCCCCHHHHHHH
Q 005938 32 AGLRVLVVDDDI----TCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDV------HMPDMDGFKLLEH 100 (668)
Q Consensus 32 ~girVLIVDDDp----~ire~Lk~lL~~~gy-~V~tasng~EALelLre~~~~PDLVIlDI------~MPdmDG~ELLe~ 100 (668)
.|-.|+-+|--. ..+..+-..++..+. -..-|.+.+|++...+.. +|+|=+-+ ......-|+|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G---~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELG---FDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT----SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcC---CCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 466677777542 223333333444332 234688999999987653 89887653 1112346889999
Q ss_pred HhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 101 Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
|... .+|||.=-...+.+.+.+|+++||+..+.=
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 9764 889887777889999999999999988763
No 258
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.12 E-value=1.6e+02 Score=31.54 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=52.7
Q ss_pred CCCeEEEECCHH-----HH---H-HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHH
Q 005938 56 CLYNVTTCSQAA-----VA---L-DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (668)
Q Consensus 56 ~gy~V~tasng~-----EA---L-elLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~ 126 (668)
.+..+..++++. ++ . .++++.. ||++|.=---|..-|-.-.+++-+..++|.|+++...... ..++++
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~~d~l~ 106 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK-VKDAME 106 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc-hHHHHH
Confidence 367777777663 22 2 2445555 9988885544555666666666555788999998765554 347888
Q ss_pred cCCcEEEeCCCC
Q 005938 127 HGACDYLIKPIR 138 (668)
Q Consensus 127 ~GA~dYLlKPis 138 (668)
..-.+||+-+.+
T Consensus 107 ~~g~GYIivk~D 118 (277)
T PRK00994 107 EQGLGYIIVKAD 118 (277)
T ss_pred hcCCcEEEEecC
Confidence 878888766544
No 259
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=41.11 E-value=34 Score=33.92 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCH--HHHHHHHhccCCCcEEE
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HM-PDMDG--FKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI-~M-PdmDG--~ELLe~Ir~~~~IPVII 111 (668)
|||||..-.+-..|..+|...++.|....+...-++.++... ||.||+-= -| |..++ .++++.+ ...+||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA--PSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999998888877765432233344433 78776632 11 11222 2344433 24678775
Q ss_pred E
Q 005938 112 M 112 (668)
Q Consensus 112 L 112 (668)
+
T Consensus 78 I 78 (191)
T PRK06774 78 V 78 (191)
T ss_pred E
Confidence 4
No 260
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=41.09 E-value=3.6e+02 Score=27.96 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=59.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHH----HHHHHhcc
Q 005938 35 RVLVVDDDITCLRILEQMLR---RCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFK----LLEHIGLE 104 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~---~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmD---G~E----LLe~Ir~~ 104 (668)
.|.+-..||..+..+..+++ ..++.+..-+||.-..+.++ . .|.|.+|+..|... .++ .++.+++.
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~--~--~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR--D--LDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh--h--CCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 58888999998766666655 45888888888875444433 2 68899999988632 233 33344322
Q ss_pred CC--CcEEEEeccCCHHHHHHHHHcC-CcEEEeCCCCH
Q 005938 105 MD--LPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIRE 139 (668)
Q Consensus 105 ~~--IPVIILSa~sd~e~a~kAl~~G-A~dYLlKPis~ 139 (668)
.. +.++ ++...+.+.+.+..... ...+++-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22 3444 44555555555443321 22466777654
No 261
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.91 E-value=1.4e+02 Score=30.62 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 63 asng~EALelLre~~~~PD-LVIlDI~MPd---mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
..+..+..+.+.+.. .| |+++|+.--+ ..-+++++++++...+||++--+-.+.+.+.+.+..|++..++
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 346777777776653 55 8888886421 1236778888776779999988888999999999999876654
No 262
>PRK14098 glycogen synthase; Provisional
Probab=40.71 E-value=2.1e+02 Score=32.85 Aligned_cols=112 Identities=8% Similarity=0.091 Sum_probs=61.4
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 33 girVLIVDDD-p~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.++++|+.+- ....+.|+++.....-.|.... +..++..++.. -|++++=-. .+--|+-.++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 4677777653 3345666666655433343322 33333333332 587775332 2334665555554 35555
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|+...-.-.+.+.+....+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 543322222222222234678999999999999999988764
No 263
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.55 E-value=72 Score=39.77 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCC--CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMD--LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELLe~Ir~~~~--IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+-|+|+| ++|-..+.++.+.++-+++. +.+|+. ..+...+...+...+.-|-+||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE--CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 36799998 67766666665544434443 444444 44555577788888889999999999999999888765
No 264
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=40.25 E-value=3.6e+02 Score=29.88 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=62.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCC---CCCH--HHHHHHHhcc
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMP---DMDG--FKLLEHIGLE 104 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy--~V~tas--ng~EALelLre~~~~PDLVIlDI~MP---dmDG--~ELLe~Ir~~ 104 (668)
++..||.|-+. ++.+++.++..+. .|.... +.++..+.+.. .|+.++=.... +.+| ..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45566655443 3445555554432 233322 23444444443 47776533211 1233 45666653
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 105 ~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..+|||. |... .+.+.+..|..+++..|-+.++|.+.+..++.
T Consensus 327 ~G~PVI~-t~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVS-TLHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEE-eCCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4678875 3222 24566788999999999999999999988765
No 265
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=39.72 E-value=3.4e+02 Score=28.28 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=59.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECC--HHHHHHHHHHcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQ--AAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasn--g~EALelLre~~~~PDLVIlDI~M-P----dmDG~ELLe~Ir~ 103 (668)
.++++||.+.+. .+.++.+....+ ..|..... .++..+.+.. .|++++-... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 356666665442 234444444422 23333322 2344444432 4666553221 1 112566666664
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..+|||. +.... ..+.+..+..+++..|-+.++|.+.+.+++.
T Consensus 293 -~G~PvI~-s~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 -SGVPVVA-TRHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred -cCCCEEE-eCCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 4678875 32222 3344566778899999999999999988765
No 266
>PRK07695 transcriptional regulator TenI; Provisional
Probab=39.55 E-value=2.6e+02 Score=27.87 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
++.+.+++.+... . ..|.|++.-..|. ..|++.++.+....++||+.+-+- +.+.+.+++..|++.+
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777665443 2 3798887642221 236788888876567999877666 7788999999999876
No 267
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=39.54 E-value=23 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
|+.+... |++..+||.++|. +.+-+++..|++
T Consensus 10 ii~l~~~-G~s~~~ia~~lgv-s~~Tv~~w~kr~ 41 (50)
T PF13384_consen 10 IIRLLRE-GWSIREIAKRLGV-SRSTVYRWIKRY 41 (50)
T ss_dssp HHHHHHH-T--HHHHHHHHTS--HHHHHHHHT--
T ss_pred HHHHHHC-CCCHHHHHHHHCc-CHHHHHHHHHHc
Confidence 4455444 9999999999995 556777777776
No 268
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=39.14 E-value=93 Score=38.42 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=50.8
Q ss_pred CceEEEEe-CCCCCCCHHHHHH-HHhccC-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFKLLE-HIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELLe-~Ir~~~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+.|+|+| ++|-...++..|. .|.+-+ .+-+|++| .+.+.+...|+.-+..|-.+++..++|...|.+++.+
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888887 6666666776444 444432 34455555 4445577788888889999999999999988887754
No 269
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.68 E-value=2.1e+02 Score=29.27 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=57.1
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE-EeccCCHHHHHHHHHcC
Q 005938 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHG 128 (668)
Q Consensus 51 ~lL~~~g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII-LSa~sd~e~a~kAl~~G 128 (668)
..|.... .-|....+.+++++.++... .-.+=++.+.+-.-++++.++.|+.....++++ .-+--+.+.+..|+++|
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG 83 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG 83 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC
Confidence 3344433 34556667777777665431 123336677777778999999986543334332 33345677899999999
Q ss_pred CcEEEeCCCCHHHHHHH
Q 005938 129 ACDYLIKPIREEELKNI 145 (668)
Q Consensus 129 A~dYLlKPis~eEL~~i 145 (668)
|+ |+.-|....++.+.
T Consensus 84 A~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 84 GR-LIVTPNTDPEVIRR 99 (206)
T ss_pred CC-EEECCCCCHHHHHH
Confidence 95 66667655555543
No 270
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.58 E-value=2.3e+02 Score=34.07 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=42.9
Q ss_pred CceEEEEe-CCCCCCCHHH-HHHHHhccC-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFK-LLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~E-LLe~Ir~~~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+.|||+| +++-..+... |++.|.+.. .+.+|++|. +...+...+..-+.-|-.+|++.+++...+++++.+
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt--~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT--EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC--ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 36788888 4443333333 344443322 233344343 334444556666667889999999999998887654
No 271
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=38.43 E-value=2.7e+02 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEE-eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMM-SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~E-LLe~Ir~~~~IPVIIL-Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
.|.+|++..-+..=-+| ++..+. .....||.. ....+...+..+++.|+++.+++|-+..++++....+-
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~ 168 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLK 168 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 46666665444333334 223332 234455543 33445566778899999999999999999998777653
No 272
>PRK13566 anthranilate synthase; Provisional
Probab=38.43 E-value=71 Score=38.79 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCC-CCHHHHHHHHhccC
Q 005938 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPD-MDGFKLLEHIGLEM 105 (668)
Q Consensus 29 ~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD-I-~MPd-mDG~ELLe~Ir~~~ 105 (668)
....+++|||||.+..+...|.++|+..++.|..+..... .+.+... .||.||+- = ..|. .+-.++++++. ..
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~ 597 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-AR 597 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HC
Confidence 3446789999999988999999999999998877665432 1223323 38987762 1 1121 12234444432 24
Q ss_pred CCcEEEE
Q 005938 106 DLPVIMM 112 (668)
Q Consensus 106 ~IPVIIL 112 (668)
++||+-+
T Consensus 598 ~iPILGI 604 (720)
T PRK13566 598 NLPIFGV 604 (720)
T ss_pred CCcEEEE
Confidence 6887644
No 273
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=38.26 E-value=5e+02 Score=27.33 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=58.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~-tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
.+||.||---..........+.... +.+. .++ +.+.|.+..++.. ..-+..|+ +.+-..+++-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~-----------~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL-----------EELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH-----------HHHhcCCCCC
Confidence 4788888866555444444444432 3443 333 4444444444432 22122221 2222223344
Q ss_pred EEEEe--ccCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 005938 109 VIMMS--ADGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (668)
Q Consensus 109 VIILS--a~sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~V 149 (668)
+|++. ...-.+.+.+|+++|..=|+-||+ +.+|..++++.+
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 44333 345678899999999999999997 678888666654
No 274
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.17 E-value=2.7e+02 Score=29.51 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=62.4
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEE-eCCCC--------CCCHHHHH
Q 005938 32 AGLR-VLVVDDDITCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLS-DVHMP--------DMDGFKLL 98 (668)
Q Consensus 32 ~gir-VLIVDDDp~ire~Lk~lL~~~gy~V~t-as--ng~EALelLre~~~~PDLVIl-DI~MP--------dmDG~ELL 98 (668)
.|.. ++|.|-.....+.+...+++.+..... +. +..+=++.+.+.. .+.|-+ .. ++ ..+..+++
T Consensus 116 aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~-~GvTG~~~~~~~~~~~~i 192 (258)
T PRK13111 116 AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSR-AGVTGARSADAADLAELV 192 (258)
T ss_pred cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeC-CCCCCcccCCCccHHHHH
Confidence 4554 444455555555666666666655432 33 2234455555544 454433 11 11 12356688
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
+++|+..++||++=.+-.+.+.+.++... |++.+.-.
T Consensus 193 ~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 193 ARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 88987778999998888888899888875 99988864
No 275
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=38.09 E-value=3.1e+02 Score=30.01 Aligned_cols=67 Identities=9% Similarity=0.017 Sum_probs=45.5
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 59 ~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
....+.+.+++.+.++.. +|+|.+|=.-| -++.+.++....-..|..|+--+.+.+.+-.+.|++-.
T Consensus 211 IeVEv~sleea~ea~~~g---aDiI~LDn~s~----e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 211 VEVEVENLDELDQALKAG---ADIIMLDNFTT----EQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEEeCCHHHHHHHHHcC---CCEEEeCCCCh----HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 345789999999998754 79999996444 22333333222223566777888888888888888643
No 276
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.06 E-value=29 Score=41.22 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=7.0
Q ss_pred cccCCcccccccc
Q 005938 636 KEEPNLEFVENAK 648 (668)
Q Consensus 636 ~~~~~~~~~~~~~ 648 (668)
.+||.|.+.|..|
T Consensus 280 ~~~~~iQi~~~CK 292 (1179)
T KOG3648|consen 280 EREPKIQVSELCK 292 (1179)
T ss_pred hcCchhhHHHHHH
Confidence 4556665555444
No 277
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=37.80 E-value=3.1e+02 Score=29.66 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
++..+.+.. -|+.++- ..+..-|+.++|.+. ..+|||. |... ...+.+..|..+++..|.+.++|.+.+
T Consensus 292 ~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i 360 (396)
T cd03818 292 DQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAV 360 (396)
T ss_pred HHHHHHHHh----CcEEEEc-CcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHH
Confidence 455555543 4666542 235555666777664 4678875 3222 344566778899999999999999999
Q ss_pred HHHHHH
Q 005938 147 QHVVRK 152 (668)
Q Consensus 147 q~Vlrk 152 (668)
.+++..
T Consensus 361 ~~ll~~ 366 (396)
T cd03818 361 IELLDD 366 (396)
T ss_pred HHHHhC
Confidence 888753
No 278
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.70 E-value=1e+02 Score=30.43 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmD-------G~ELLe~Ir~~-----~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
+..+.++.+... +|.|+++-.-|+.+ +++.++++++. +.+||++.-+ -..+.+.++++.||+.+
T Consensus 115 t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEE
Confidence 345555554332 67777765444433 33444445321 2356544443 45678888899999987
Q ss_pred EeC
Q 005938 133 LIK 135 (668)
Q Consensus 133 LlK 135 (668)
+.-
T Consensus 191 ivg 193 (210)
T TIGR01163 191 VAG 193 (210)
T ss_pred EEC
Confidence 654
No 279
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=37.64 E-value=1.1e+02 Score=30.02 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 80 PDLVIlDI~MPdmDG-------~ELLe~Ir~~-----~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+|.|+++-..|+.+| ++.++++++. +++|+++.-+ -+.+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEC
Confidence 688877765555433 3445555422 2467655444 44588889999999988753
No 280
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=37.45 E-value=38 Score=37.32 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHhc---CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 249 RILELMN---VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 249 kILeLL~---v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+++++|. ..-++++++|.++|. +.+.|-+.||+++|+||.
T Consensus 224 ~~i~~me~nle~plsl~~LA~~~~~-S~R~leRlF~~~lG~sP~ 266 (328)
T COG4977 224 RAIELMEANLEEPLSLEELADRAGL-SRRQLERLFRAELGVSPA 266 (328)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHhCC-CHHHHHHHHHHHhCCCHH
Confidence 3344553 477899999999997 568899999999999985
No 281
>PRK04302 triosephosphate isomerase; Provisional
Probab=37.45 E-value=4e+02 Score=27.13 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred CccEEEEEeCC------HHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHHcCCCceEEEEeCC--C----C----CCCH
Q 005938 32 AGLRVLVVDDD------ITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVH--M----P----DMDG 94 (668)
Q Consensus 32 ~girVLIVDDD------p~ire~Lk~lL~~~gy~V~t-asng~EALelLre~~~~PDLVIlDI~--M----P----dmDG 94 (668)
.|...+|+.|. ....+.++.. .+.+..+.. +.+.+++.. +.... +|+|-..-. + . .-.+
T Consensus 84 ~G~~~vii~~ser~~~~~e~~~~v~~a-~~~Gl~~I~~v~~~~~~~~-~~~~~--~~~I~~~p~~~igt~~~~~~~~~~~ 159 (223)
T PRK04302 84 AGAVGTLINHSERRLTLADIEAVVERA-KKLGLESVVCVNNPETSAA-AAALG--PDYVAVEPPELIGTGIPVSKAKPEV 159 (223)
T ss_pred cCCCEEEEeccccccCHHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-HhcCC--CCEEEEeCccccccCCCCCcCCHHH
Confidence 45555666652 1222333333 334665554 444444443 43333 777654311 1 0 0112
Q ss_pred -HHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 95 -FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 95 -~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.++++.+++. .++|||.-.+-.+.+.+.++...|+++.+.=
T Consensus 160 i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 160 VEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 3445556653 4789998888888999999999999998754
No 282
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=37.36 E-value=1.6e+02 Score=30.33 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=43.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~--~~~PDLVIlDI~ 88 (668)
.+..-+|.-+|-++...+..++.++..++. +. ...++.+.+..+... ...||+|++|..
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 344458999999999999999999887652 33 456777777766433 235999999975
No 283
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=36.98 E-value=30 Score=37.08 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=27.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|.++|. +..||.+.||+. |+|++.
T Consensus 157 ~~lsl~~lA~~~g~-S~~~L~R~Fk~~-G~S~~~ 188 (274)
T PRK09978 157 HEWTLARIASELLM-SPSLLKKKLREE-ETSYSQ 188 (274)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHhc-CCCHHH
Confidence 46899999999998 567999999986 998864
No 284
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=36.97 E-value=2e+02 Score=32.55 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=68.9
Q ss_pred HHHHHHcCC-------CCCCCccccccccCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHH
Q 005938 5 QRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILR 74 (668)
Q Consensus 5 ~~lv~~~gG-------s~~~~~~~~d~~~~e~fP~girVLIVDDD-p~ire~Lk~lL~~~gy~V~tas--ng~EALelLr 74 (668)
++++++=|| ||++...+.-+.+ ..+|=+|++.+|- --.+..+..++.+.+++|..+. +..+.++.+.
T Consensus 70 ~~~a~LEg~~~~~afsSGmaAI~~~~l~l---l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~ 146 (396)
T COG0626 70 EALAELEGGEDAFAFSSGMAAISTALLAL---LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK 146 (396)
T ss_pred HHHHHhhCCCcEEEecCcHHHHHHHHHHh---cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc
Confidence 455666666 4555555443333 3447788988883 5567788888888898888666 4445555555
Q ss_pred HcCCCceEEEEeCC-CCCCCHH--HHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 75 ERKGCFDVVLSDVH-MPDMDGF--KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 75 e~~~~PDLVIlDI~-MPdmDG~--ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
.. ..++|+++.- -|-|.-. ..+.++..... .++++=..=-.-+..+.+.+||+=.
T Consensus 147 ~~--~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 147 EP--NTKLVFLETPSNPLLEVPDIPAIARLAKAYG-ALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred cc--CceEEEEeCCCCcccccccHHHHHHHHHhcC-CEEEEECCcccccccChhhcCCCEE
Confidence 32 3799999861 1333222 22233322233 3333322222335667788887643
No 285
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=36.80 E-value=4.4e+02 Score=26.22 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++|+.+.+. ...++..+...+ ..|......++..+.+.. -|++|.-.... .=|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e-~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFE-GFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCcccc-ccCHHHHHHHH--cCCCEE
Confidence 456666655432 223333444333 234444333444444443 47877765542 23566777664 467877
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
........ ...+..+..+++.++.+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 53222222 234556678899999999999999998864
No 286
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.78 E-value=60 Score=34.57 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=40.3
Q ss_pred CHHHHHHHHh-ccCCCcEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 005938 93 DGFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (668)
Q Consensus 93 DG~ELLe~Ir-~~~~IPVIILSa~s------d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq 147 (668)
+.+++++++| ...++|+|+||=++ -.....+|-+.|+++.|+-.+..+|-.....
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 3578888888 77899999998533 3345777889999999998777766554433
No 287
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=36.59 E-value=2.3e+02 Score=28.69 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH---HHHcCC
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGA 129 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~MPd---------mDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~k---Al~~GA 129 (668)
.+..+.++.+.... +|.|++|++-.. .+-.+++..++. .....+++=....+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~~g--~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAASG--ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTTC--SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC--CCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 34445566655544 999999997644 233344444443 22346666555556666666 999999
Q ss_pred cEEEeCCC-CHHHHHHHHHHH
Q 005938 130 CDYLIKPI-REEELKNIWQHV 149 (668)
Q Consensus 130 ~dYLlKPi-s~eEL~~iLq~V 149 (668)
++.++-=+ +.++++.+.+.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 99866444 677777766654
No 288
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=36.43 E-value=2.4e+02 Score=31.20 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=41.8
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH
Q 005938 33 GLRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (668)
Q Consensus 33 girVLIVDDDp~i-----re~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELL 98 (668)
+-|+|||-|.... .+.+...|+..++.+..+. +..++++.++... +|.||- +.+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589999776443 3567778877677665443 3457777777765 999875 3555555555
Q ss_pred HHH
Q 005938 99 EHI 101 (668)
Q Consensus 99 e~I 101 (668)
+.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 554
No 289
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=36.16 E-value=1.8e+02 Score=34.38 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=53.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.++.++++|.|+...+.++ +.++.+...+ .-.+.|+...-. +.|+||+-+.=+ .+-..++..+|+ .++++|
T Consensus 422 ~g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~I 494 (601)
T PRK03659 422 NKMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGAE--KAEAIVITCNEP-EDTMKIVELCQQHFPHLHI 494 (601)
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeE
Confidence 3567777777776554443 2455554332 123444444333 367777665332 233455566654 467777
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
|.-+ .+.+...+..+.||+..+.
T Consensus 495 iaRa--~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 495 LARA--RGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEEe--CCHHHHHHHHhCCCCEEEc
Confidence 7654 3456677788899987664
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.15 E-value=2.7e+02 Score=31.32 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=58.3
Q ss_pred cCCCCCCCccccccccCC-CCCCc-cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 11 SGGSGYGSSRAADVAVPD-QFPAG-LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 11 ~gGs~~~~~~~~d~~~~e-~fP~g-irVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
+|.+|.|++.+.--.... ....+ .+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.... ..|+||+
T Consensus 143 vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLI 221 (374)
T PRK14722 143 MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLI 221 (374)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEE
Confidence 344566666643322111 11112 57888877764 345555555566777777776666555555443 4799999
Q ss_pred eCC-CCCCCHH--HHHHHHhc-c-CCCcEEEEeccCCHHHH
Q 005938 86 DVH-MPDMDGF--KLLEHIGL-E-MDLPVIMMSADGRVSAV 121 (668)
Q Consensus 86 DI~-MPdmDG~--ELLe~Ir~-~-~~IPVIILSa~sd~e~a 121 (668)
|.- +...|.. +.+..+.. . +.-.++++++....+.+
T Consensus 222 DTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 222 DTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred cCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 962 2222322 23333321 1 22336777776655443
No 291
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.06 E-value=4.8e+02 Score=27.51 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE------EeCCCCHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY------LlKPis~eEL~~iLq~Vlr 151 (668)
+++++++++..++|||..-+-.+.+.+.+++..||+.. +.-|.-..++++-+.+.+.
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 57788887666899999888889999999999998754 2234444444444444333
No 292
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.98 E-value=2.2e+02 Score=33.33 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=58.9
Q ss_pred cEEEEE--eCCHHHHHHHHHHHHh----CCCeEEEECCHHHHHH----------------HHHHcCCCceEEEEeCCCCC
Q 005938 34 LRVLVV--DDDITCLRILEQMLRR----CLYNVTTCSQAAVALD----------------ILRERKGCFDVVLSDVHMPD 91 (668)
Q Consensus 34 irVLIV--DDDp~ire~Lk~lL~~----~gy~V~tasng~EALe----------------lLre~~~~PDLVIlDI~MPd 91 (668)
-+|+|| -+.+...+.+..+..+ .++.|.........+. .+......+|+||+ -+
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 367777 4556666555555443 4566655433222110 00001123687776 36
Q ss_pred CCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 92 MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 92 mDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
.||- +++..+. ...+||+-+ ..|-.+||. ++..+++...++++++..+
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 6774 4444442 345787643 467788985 7899999999999887653
No 293
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=35.79 E-value=3.3e+02 Score=28.39 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI 87 (668)
+.+|..+|-++...+..++-+...+..+. ..+..+.+.... ...+|+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 36899999999999888888776655443 334433332111 12499999984
No 294
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.78 E-value=4.4e+02 Score=28.79 Aligned_cols=90 Identities=14% Similarity=0.017 Sum_probs=55.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC-----CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 35 RVLVVDDDITCLRILEQMLRRC-----LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~-----gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
-|||=|.+-...-.+...+... .. ...++.+.+++.+.+... +|+|++|=.-|+ +--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aG---aDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAHG---AQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 3566666655444444444321 12 234788999999998653 899999954333 2222333332 233
Q ss_pred EEEEeccCCHHHHHHHHHcCCcE
Q 005938 109 VIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~d 131 (668)
+|-.|+--+.+.+.+-...|++-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCE
Confidence 56678888888888888888864
No 295
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=35.52 E-value=70 Score=32.59 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=39.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~-tasng~EALelLre~~~~PDLVIlDI 87 (668)
.-++++||-+......|++-++..+ -.+. ...++..+|..+... ..+|+|++|=
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 4689999999999999999998776 2333 344555666655543 2499999994
No 296
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.43 E-value=3.7e+02 Score=27.86 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCC-CC-C-CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVH-MP-D-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~-MP-d-mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+..+..+.+.+. .-.|+++|+. +- + ..-+++++++.+...+||++=-+-.+.+.+.+.+..|++..++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 4677776666553 1348888886 32 2 2458899998776788998877788899999999999998776
No 297
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.15 E-value=2.1e+02 Score=28.90 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=52.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~M---PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
..+..+..+.+.+.. .-.+.++|+.- ....-+++++++++...+||++=-+-.+.+.+.+++..||+..++--
T Consensus 29 ~~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 346777777776543 23577888742 11234778888876678899987778889999999999998876543
No 298
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=35.06 E-value=2.8e+02 Score=30.57 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=42.9
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 005938 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (668)
Q Consensus 34 irVLIVDDDp~ir-----e~Lk~lL~~~gy~V~tasn---------g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe 99 (668)
-|+|||-|..... +.+...|+..++.+..+.. ..++.+.+++.. +|+||- ..+.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4899998876544 5677778776776655433 457777887765 898875 45666666665
Q ss_pred HH
Q 005938 100 HI 101 (668)
Q Consensus 100 ~I 101 (668)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 299
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=34.83 E-value=5.3e+02 Score=29.02 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred ceEEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHH
Q 005938 80 FDVVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVV 150 (668)
Q Consensus 80 PDLVIlDI~----MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL-----lKPis~eEL~~iLq~Vl 150 (668)
.|.|.+..- .....+++.+++++...++||++.-+- ..+.+.+++..||+.++ .+.-++.+..+.++..+
T Consensus 132 aD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 132 VDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred CCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 788866531 122467888888876566888776554 56778899999999754 44445555555444444
Q ss_pred H
Q 005938 151 R 151 (668)
Q Consensus 151 r 151 (668)
+
T Consensus 211 ~ 211 (430)
T PRK07028 211 D 211 (430)
T ss_pred h
Confidence 3
No 300
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=34.75 E-value=1.7e+02 Score=32.60 Aligned_cols=57 Identities=14% Similarity=-0.029 Sum_probs=40.9
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 79 CFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 79 ~PDLVIlDI~MPdmD-G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.+|+|++|+.-.... -++.+++||....-+.|+--.-.+.+.+..++++||+...+=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 489999999765543 467888887543333444443677888999999999987543
No 301
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.71 E-value=1.3e+02 Score=33.17 Aligned_cols=65 Identities=18% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmD-G~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
+++.++++.. -.+|+|.+|+-.++.+ -.+++++|+.. ++++||.= .-.+.+.+..++++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4455555431 0259999999887754 56688888754 45666552 23478889999999998754
No 302
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=34.54 E-value=2.2e+02 Score=31.85 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=52.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~-V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~-Ir~~~~IPVI 110 (668)
-+|..+|-++...+.+++-++..+.. + ....++.+.+.. . ..||+|++|- |+ .+.+++.. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~G-s~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FG-SPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CC-CcHHHHHHHHHHhcCCCEE
Confidence 46999999999999999888765543 2 345555554432 2 2499999995 44 34567666 5544445688
Q ss_pred EEeccCCH
Q 005938 111 MMSADGRV 118 (668)
Q Consensus 111 ILSa~sd~ 118 (668)
.+|+.+-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876543
No 303
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.53 E-value=2.1e+02 Score=29.31 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-CCcEEEe
Q 005938 68 VALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI 134 (668)
Q Consensus 68 EALelLre~~~~PD-LVIlDI~----MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~-GA~dYLl 134 (668)
+..+.+.+.. .| |++.++. +++ -.++++++++...++|||..-+-.+.+.+.++++. ||+..+.
T Consensus 153 ~~~~~l~~~G--~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEELG--AGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHCC--CCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3334444333 67 6665653 222 23788888876678999988888889999999987 8887654
No 304
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.48 E-value=5e+02 Score=27.23 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=61.5
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE-----EC--CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-C
Q 005938 37 LVVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-D 106 (668)
Q Consensus 37 LIVDDDp~ire~Lk~lL~~~gy~V~t-----as--ng~EALelLre~~~~PDLVIlDI~MPdm--DG~ELLe~Ir~~~-~ 106 (668)
.+..|...+.+.++.+- ..+..|.. .. +..+..+.+.+. ..|.|.+|...++. --++.++++++.. +
T Consensus 115 ~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ 191 (231)
T TIGR00736 115 ELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFND 191 (231)
T ss_pred hhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCC
Confidence 35556555656665555 33333321 11 222333444443 38988889777763 2478888887664 5
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+|||---.-.+.+.+.+.++.||+...+
T Consensus 192 ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 9999887788889999999999987643
No 305
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=34.45 E-value=1e+02 Score=33.53 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=44.8
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVI--ILSa~sd~e~a~kAl~~GA~dYL-----lKPis~eEL~~iLq~Vlrk 152 (668)
-++++++++++...+||| ..-+-.+.+.+..++++||+..+ .|.-++.+..+.+..++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478889998776789998 55556689999999999999875 3444666666666665543
No 306
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=34.42 E-value=7.1e+02 Score=27.94 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=55.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~-V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I-r~~~~IPVI 110 (668)
-+|+.+|-++...+.+++-++..+.. + ....++...+... ...||+|++|- ++. ..+++..+ +...+-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999999988765432 3 2344444444332 23499999986 443 23455443 333344678
Q ss_pred EEeccCCHH----HHHHHH-HcCCc
Q 005938 111 MMSADGRVS----AVMRGI-RHGAC 130 (668)
Q Consensus 111 ILSa~sd~e----~a~kAl-~~GA~ 130 (668)
.+|+.+... +...++ ++|+.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCc
Confidence 888765443 244555 44653
No 307
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.36 E-value=2.3e+02 Score=29.53 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~MPd---mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.+..+..+.+.+.. .-.|+++|+.-.+ ..-++++++|++...+||++--+-.+.+.+.+++..||+..++=
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47777777776643 2358888986443 23466778887667799999888899999999999999887653
No 308
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=34.23 E-value=2e+02 Score=28.69 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=33.3
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-C--CC-cEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-M--DL-PVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 80 PDLVIlDI~MPdmDG-------~ELLe~Ir~~-~--~I-PVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.|.|+++-.-|+.+| ++.+++++.. . .+ ++|++.+--+.+.+.++.+.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 687777654454433 3444444322 1 12 4555656566678888888999977543
No 309
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=34.16 E-value=1.1e+02 Score=23.64 Aligned_cols=42 Identities=29% Similarity=0.401 Sum_probs=31.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhh
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHL 268 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshV 268 (668)
.|+.+-...|.++|.++|.+ .-++|.+.|. .+.|..++-++-
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~ 44 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRY 44 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHH
Confidence 59999999999999999977 2356777764 478888876653
No 310
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=34.05 E-value=2.2e+02 Score=28.90 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=52.9
Q ss_pred ECCHHHHHHHHHHcCCCc-eEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 63 CSQAAVALDILRERKGCF-DVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 63 asng~EALelLre~~~~P-DLVIlDI~MPd---mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+..++.+.+.... + .|+++|+.--+ ..-+++++++.+...+||++=.+-.+.+.+.+++..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776543 4 48899996543 23467788887667889988778888899999999998877664
No 311
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.69 E-value=2.1e+02 Score=30.01 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=54.2
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+..+..+.+.... .-.|+++|+.--++ .-++++++|.....+||++=.+-.+.+.+.+.+..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346777777666543 23699999976642 3478899997667899888778888999999999999987764
No 312
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=33.67 E-value=3.3e+02 Score=29.07 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred CccEEEEEeCCHH----HHHHH--HHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHH
Q 005938 32 AGLRVLVVDDDIT----CLRIL--EQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~----ire~L--k~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~MPdmDG-----~ELL 98 (668)
..+|+=|+.|+.. ..+.+ .+.|-+.||.|. +..|..-|.++.+.. .. +++-+-=|-.+| -..+
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---ca-avMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---CA-AVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT----S-EBEEBSSSTTT---SSTHHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---CC-EEEecccccccCcCCCCHHHH
Confidence 4678888877643 22222 234456699986 344555555544332 12 344444443333 3466
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK-----Pis~eEL~~iLq~Vlr 151 (668)
+.|++..++|||+=.+-.....+.+|+++|++..|+- --++..+.+++++++.
T Consensus 168 ~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 168 RIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 7777667999999999999999999999999999874 4567777777776654
No 313
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.64 E-value=4e+02 Score=30.86 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=46.0
Q ss_pred ceEEEEe-CCCCCCCHHHH-HHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 80 FDVVLSD-VHMPDMDGFKL-LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 80 PDLVIlD-I~MPdmDG~EL-Le~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+-|+|+| ++|-..++++. ++.+...+.-.++++.+ .+...+..++..-+.-+-.+|++.+++...+.+.+++.
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t-t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT-TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE-CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5688887 45554445543 34444333333333333 34555666777666778899999999999888876643
No 314
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=33.36 E-value=4.3e+02 Score=26.37 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=43.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|==.....--++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988876542 32 45566566554332222379999995333323344555553
No 315
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.31 E-value=3.6e+02 Score=30.82 Aligned_cols=101 Identities=23% Similarity=0.265 Sum_probs=50.0
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeCC--CC-CCCHHHHH
Q 005938 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH--MP-DMDGFKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tas---ng~----EALelLre~~~~PDLVIlDI~--MP-dmDG~ELL 98 (668)
.+.+|++||-|.. ..+.|+.+-...+..+..+. +.. ++++.+... .+|+||+|.- ++ +.+.++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 4679999999842 33344444444455554433 332 344444333 3899999972 22 12234444
Q ss_pred HHHhc--cCCCcEEEEeccCCHHHHH--HHHH--cCCcEEEe
Q 005938 99 EHIGL--EMDLPVIMMSADGRVSAVM--RGIR--HGACDYLI 134 (668)
Q Consensus 99 e~Ir~--~~~IPVIILSa~sd~e~a~--kAl~--~GA~dYLl 134 (668)
..+.. .++-.+.++.+....+.+. +.+. .+..+.|+
T Consensus 205 ~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIl 246 (428)
T TIGR00959 205 AAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVL 246 (428)
T ss_pred HHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEE
Confidence 44432 2333345555544333222 2232 45666543
No 316
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.04 E-value=59 Score=32.35 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=44.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE-eCC-CCCCCH--HHHHHHHhccCCCcEEE
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVH-MPDMDG--FKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl-DI~-MPdmDG--~ELLe~Ir~~~~IPVII 111 (668)
|||||..-.+-..+..+|...++.+....+....++.+.... ||.||+ -=- -|..++ .++++++ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL--PLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 899999999999999999998888876654322233333333 885555 211 122222 2344443 24678765
Q ss_pred E
Q 005938 112 M 112 (668)
Q Consensus 112 L 112 (668)
+
T Consensus 78 I 78 (188)
T TIGR00566 78 V 78 (188)
T ss_pred E
Confidence 4
No 317
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=32.91 E-value=5e+02 Score=25.79 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
++..+++.. .|++|.-... +.-|..+++.+. ..+|||.... .. ..+.+..+-.+++..+.+.++|.+.+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 444444432 3666654433 333455666553 4677765332 22 33445557888999999999999999
Q ss_pred HHHHH
Q 005938 147 QHVVR 151 (668)
Q Consensus 147 q~Vlr 151 (668)
.+++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 88754
No 318
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=32.68 E-value=36 Score=26.41 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.5
Q ss_pred HHhcCCCCCHHHHHhhhcccchhHHHHHHHH
Q 005938 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKR 282 (668)
Q Consensus 252 eLL~v~gLti~EVAshVGy~D~qYFrk~FKK 282 (668)
+++..-|+|..++|+.+| .+.++++++.+.
T Consensus 3 ~~r~~~gls~~~la~~~g-is~~~i~~~~~g 32 (55)
T PF01381_consen 3 ELRKEKGLSQKELAEKLG-ISRSTISRIENG 32 (55)
T ss_dssp HHHHHTTS-HHHHHHHHT-S-HHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHhC-CCcchhHHHhcC
Confidence 556678999999999999 566666666654
No 319
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.66 E-value=1.9e+02 Score=28.97 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=51.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE----C--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~--gy~V~ta----s--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
..+++|.++-..+...+.+.+.|+.. +..+..+ . +.++.++.+.+.. ||||++-+-+|...- ++.+.+
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~--~dil~VglG~PkQE~--~~~~~~ 121 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG--AGIVFVGLGCPKQEI--WMRNHR 121 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEEcCCcHhHH--HHHHhH
Confidence 45689999999999999999999875 3444332 1 1234456666655 999999999998753 334444
Q ss_pred ccCCCcEEE
Q 005938 103 LEMDLPVIM 111 (668)
Q Consensus 103 ~~~~IPVII 111 (668)
.....+|++
T Consensus 122 ~~~~~~v~~ 130 (177)
T TIGR00696 122 HLKPDAVMI 130 (177)
T ss_pred HhCCCcEEE
Confidence 333344443
No 320
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.64 E-value=1.2e+02 Score=31.01 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=44.5
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis 138 (668)
|....+.+++++.++... .-.+=++++-|-.-+.+++++.+++ .+++ +|=.-+--+.+.+.+|+++||. |++-|.-
T Consensus 13 Vir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~ 89 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGF 89 (196)
T ss_dssp EETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-S-EEEESS-
T ss_pred EEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCC
Confidence 334445555555444221 0123355666666678999998864 3553 3334445678899999999997 5555654
Q ss_pred HHHHH
Q 005938 139 EEELK 143 (668)
Q Consensus 139 ~eEL~ 143 (668)
-+++.
T Consensus 90 ~~~v~ 94 (196)
T PF01081_consen 90 DPEVI 94 (196)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 44443
No 321
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=32.49 E-value=53 Score=32.70 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=35.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD 86 (668)
|||||..-.+-..|..+|...+..+..+.+.+..++.+.... ||.||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALK--PQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCEEEEc
Confidence 899999999999999999998888877665432233333333 8877763
No 322
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=32.42 E-value=6.3e+02 Score=27.11 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=63.9
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005938 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (668)
Q Consensus 34 irVLIVDD---Dp-~ire~Lk~lL~~~gy--~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~ 105 (668)
++++||.+ +. ...+.++++.+..+. .|.... +.++..+.+.. .|+.++-.. .+.-|.-+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 66677753 11 334455555555432 344333 23454555542 477766433 2334666777664 4
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.+|||.... .. ..+.+..|..+++..|-+.++|.+.+.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 688876433 22 3345677888999999999999999988765
No 323
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.23 E-value=3.8e+02 Score=31.81 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=67.3
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 005938 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (668)
Q Consensus 49 Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MP-----dmDG~ELLe~Ir---~~~~IPVIILSa~sd~ 118 (668)
....|+..|+.+.. +.++-..+..+.... ||.|-+|-.+- +.....+++.|. ...++.+ +..+-.+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcCCCH
Confidence 33456677888754 567777888887766 99999997442 112344555552 3345554 45677888
Q ss_pred HHHHHHHHcCCc----EEEeCCCCHHHHHHHHHH
Q 005938 119 SAVMRGIRHGAC----DYLIKPIREEELKNIWQH 148 (668)
Q Consensus 119 e~a~kAl~~GA~----dYLlKPis~eEL~~iLq~ 148 (668)
+....+.+.|++ .|+.||...++|...++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 888888999997 368899999999886554
No 324
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.06 E-value=2.8e+02 Score=28.80 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=62.2
Q ss_pred CccEEEEE-eCCHHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHH
Q 005938 32 AGLRVLVV-DDDITCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLE 99 (668)
Q Consensus 32 ~girVLIV-DDDp~ire~Lk~lL~~~gy~V~t-a--sng~EALelLre~~~~PDLVIlDI~MPd--------mDG~ELLe 99 (668)
.|..-+++ |-.......+...+++.+..... + .+..+.++.+.... .|.|++=..+|. .+..+.++
T Consensus 103 aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~ 180 (242)
T cd04724 103 AGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIK 180 (242)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHH
Confidence 34553444 55555555566666666654432 2 22345555555433 344443222332 23457778
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 100 ~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
++|+..++||++=.+-.+.+.+.++.++ |+.++.-.
T Consensus 181 ~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 181 RIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 8887778999987777888889999999 99999863
No 325
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.95 E-value=2.2e+02 Score=29.81 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHH-HcCCcEEEe
Q 005938 66 AAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (668)
Q Consensus 66 g~EALelLre~~~~PDLVIlDI~MPd-mDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl-~~GA~dYLl 134 (668)
..+.++.+.+.. .-.++++|+.--+ +.| +++++++++...+|||.--+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445556665443 1358888885432 223 6778888777889999888888999999998 789987643
No 326
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.80 E-value=5.6e+02 Score=27.98 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 35 RVLVVDDDITCLRILEQMLRR----CL--YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~----~g--y~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
-|||=|.+-.+.-.+...+.. .. .. ..++.+.+++.+.+... +|+|++|=.-|+ +--++++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~ag---aDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAG---ADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 466666665555445554443 23 22 34788999999998753 899999953332 2223333333 22
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcE
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~d 131 (668)
.++-.|+--+.+.+.+-...|++-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCE
Confidence 356678888888888888888864
No 327
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=31.70 E-value=4.6e+02 Score=28.85 Aligned_cols=71 Identities=15% Similarity=0.028 Sum_probs=44.7
Q ss_pred EEECCHHHHHHHHHH---cCCCceEEEEeCC--CCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcE
Q 005938 61 TTCSQAAVALDILRE---RKGCFDVVLSDVH--MPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 61 ~tasng~EALelLre---~~~~PDLVIlDI~--MPd---mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~d 131 (668)
.++.+.+++.+.+.. .+..+|+|++|=. -|+ .+--++.+.+........|-.|+--+.+.+.+-...|++-
T Consensus 208 VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 208 VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 478899999998871 1123899999954 122 1332333333322223347788888888888888888764
No 328
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.69 E-value=3.8e+02 Score=28.99 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCccEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHHcCCCceEEEEeCCCCCCCHHHHH
Q 005938 31 PAGLRVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDGFKLL 98 (668)
Q Consensus 31 P~girVLIV--DDDp~i---re~Lk~lL~~~gy~V~tasng~EALe-----l--Lre~~~~PDLVIlDI~MPdmDG~ELL 98 (668)
|...+|.|+ .+.+.. .+.+.+.|...++++.......+.+. . .......+|+||+ -+.||- ++
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LL 76 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HH
Confidence 333458887 333333 44555556666777765443222111 0 0111123788876 356773 33
Q ss_pred HHHh--ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 99 EHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 99 e~Ir--~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+.++ ...++||+-+.. |-.+||. .++.+++..+++++++...
T Consensus 77 ~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 77 GAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCCc
Confidence 3333 235788875543 5567775 6889999999999887653
No 329
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.67 E-value=3.3e+02 Score=29.36 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=58.8
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 35 RVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 35 rVLIV--DDDp~ir---e~Lk~lL~~~gy~V~tasng~EALel-------Lre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+|+|+ .+.+... ..+.+.|+..++.+.........+.. .......+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 3344444 44444455567776654432221110 1111123788887 366773 444444
Q ss_pred c--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 103 ~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
. ..++|++-+. .|-.+||. .+..+++...+.++++..+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3567877443 46668888 7889999999999876653
No 330
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=31.64 E-value=1.4e+02 Score=30.78 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=43.4
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005938 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 34 irVLIVDDDp------~ire~Lk~lL~~~gy~V~tasn-g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~ 106 (668)
||||++-... .....+...|.+.|++|+.+.. .......+.... ||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~--~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEIIN--ADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhccc--CCEEEEEccccCccCHHHHHHHH--cC
Confidence 5788875543 4566677777777888765443 333444444444 99998755333333334444432 46
Q ss_pred CcEEEE
Q 005938 107 LPVIMM 112 (668)
Q Consensus 107 IPVIIL 112 (668)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 776643
No 331
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=31.56 E-value=1.2e+02 Score=32.45 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 005938 72 ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 72 lLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis 138 (668)
++++.. ||++|.=---|..-|-.-++.+-...++|.|+++...... ..++++..-.+||+-+.+
T Consensus 54 ~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 54 MLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 445555 9999886655667788888887666899999999755444 568888888899876654
No 332
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.47 E-value=2.5e+02 Score=30.08 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=56.9
Q ss_pred cEEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH-----H-HHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 34 LRVLVV--DDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI-----L-RERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 34 irVLIV--DDDp~---ire~Lk~lL~~~gy~V~tasng~EALel-----L-re~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
|||.|+ .+.+. ....+.+.|+..++++.......+.+.. + ......+|+||+ -+.||- +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 577787 22233 3445555566667777665332211110 0 001113787776 356774 333333
Q ss_pred -ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 103 -LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 103 -~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
...++||+.+.. |-.+||. .++++++...++++++..+
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 234788887664 3346666 6778999999998876653
No 333
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.08 E-value=3.1e+02 Score=26.87 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=48.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPdm-------DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
..|.+.+++.++.+. . +|.|++---.|.. -|++.++++.....+||+.+-+- +.+.+.++.+.||++.-
T Consensus 100 ~S~h~~~e~~~a~~~-g--~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL-G--ADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC-T--TSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc-C--CCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 478899986665543 3 7998887654432 38999998877777999988765 44557788899998864
No 334
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.07 E-value=1.2e+02 Score=31.05 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=49.2
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 57 gy~V~tasng~EALelLre~~~~PDLVIlDI~M---PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
++.|....+.+++.+++... .|+|=+|--. | .+--+++++||+.. .++|..-++.+....|.++|++ ++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-II 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EE
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EE
Confidence 45777777888888888754 7999999743 5 77888999998655 6778888999999999999965 55
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.00 E-value=3.4e+02 Score=33.50 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCCCccccccccCCC-CCCc-cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC-
Q 005938 14 SGYGSSRAADVAVPDQ-FPAG-LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV- 87 (668)
Q Consensus 14 s~~~~~~~~d~~~~e~-fP~g-irVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI- 87 (668)
.|.|++.+.--....- .-.+ .+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.++... ..|+||+|.
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTA 272 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTV 272 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCC
Confidence 4666665543322111 1233 58888887753 234555555555667777778888777776654 579999996
Q ss_pred -CCCCC-CHHHHHHHHh-c-cCCCcEEEEeccCCHHH---HHHHHHc----CCcEEEeCCCC
Q 005938 88 -HMPDM-DGFKLLEHIG-L-EMDLPVIMMSADGRVSA---VMRGIRH----GACDYLIKPIR 138 (668)
Q Consensus 88 -~MPdm-DG~ELLe~Ir-~-~~~IPVIILSa~sd~e~---a~kAl~~----GA~dYLlKPis 138 (668)
+++.. .-.+.+..+. . .+.-.++++++....+. +.+.|+. +.+++|.-=+|
T Consensus 273 GRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 273 GMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred CCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 22211 1233333332 1 23344666766655443 4455553 56676544343
No 336
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=30.97 E-value=62 Score=32.09 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=27.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tas 64 (668)
.+||||||....+-..+.+.|+..++.+.+..
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 37999999999888889999999888776655
No 337
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.91 E-value=1.2e+02 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=39.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--c--CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~--~--~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+|+||+ -+.||- +++.++. . .++||+-+- .|-.+||. .++++++...++++++..+
T Consensus 36 ~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 36 PDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 798887 366773 4454442 2 477877443 57788999 6889999999999877643
No 338
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.79 E-value=1.8e+02 Score=33.17 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
+.+..+++. ..|+|.+|..-.+ ...++++++|+.. +++|||+ -.-.+.+.+..++++||+...
T Consensus 227 ~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 444444432 3899999985443 3567788888765 6888776 445677889999999998763
No 339
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.75 E-value=6.1e+02 Score=28.62 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=58.1
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHH---HHHHHhc
Q 005938 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFK---LLEHIGL 103 (668)
Q Consensus 32 ~girVLIVDDDp~i---re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~--MPdmDG~E---LLe~Ir~ 103 (668)
.+.+|.+|+-|+.- .+.|+.+.+..+..+..+.+..+....+... ..+|+||+|.- ++ .|-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 46789999888642 2234444444467777777777666666554 35899999972 33 24332 2222221
Q ss_pred -cCC-CcEEEEeccCCHHHHHHHHH----cCCcEEEe
Q 005938 104 -EMD-LPVIMMSADGRVSAVMRGIR----HGACDYLI 134 (668)
Q Consensus 104 -~~~-IPVIILSa~sd~e~a~kAl~----~GA~dYLl 134 (668)
.++ -.++++++......+.+.+. .|....|.
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 223 34677888776665554443 34555543
No 340
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.74 E-value=3.8e+02 Score=30.59 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCccEEEEEeC---C-HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------
Q 005938 31 PAGLRVLVVDD---D-ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------ 91 (668)
Q Consensus 31 P~girVLIVDD---D-p~ire~Lk~lL~~~-gy~--V~tasng~EALelLre~~~~PDLVIlDI~MPd------------ 91 (668)
.++..++.||- + ....+.++++-+.+ ... +..+.+.++|..++... .|.|.+-+. |+
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g 309 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVG 309 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCC
Confidence 35788899987 4 33333444443332 222 33577888888887653 687754331 11
Q ss_pred CCHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 92 MDGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 92 mDG~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.--+.++..+. ...++|||.=-+-.....+.+|+.+||+....=
T Consensus 310 ~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 310 VPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred ccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 11234433332 235788887667888899999999999987663
No 341
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.66 E-value=3.5e+02 Score=28.55 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=59.1
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDD--p~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
|++.|+..+ ....+.++..|...++.+....+.. ......|+||+ -+.||- +++.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455555333 3445556666766677766554422 11224788887 366774 44555544 888876
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+. .|-.+||. .+..+++...++++.+...
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 54 35567887 6888999999998876643
No 342
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=30.59 E-value=1.3e+02 Score=28.89 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=28.4
Q ss_pred CccEEEEEeCCHHHHH---HHHHHHHhCCCeEEEEC---CHHHH----HHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDITCLR---ILEQMLRRCLYNVTTCS---QAAVA----LDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~ire---~Lk~lL~~~gy~V~tas---ng~EA----LelLre~~~~PDLVIlDI 87 (668)
.+.+|++||-|..-.. .+.......+..+.... +..+. +..+.. ..+|+||+|.
T Consensus 27 ~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 27 KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 3679999998853222 23333333344444432 33322 222223 2489999987
No 343
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.55 E-value=5e+02 Score=28.15 Aligned_cols=66 Identities=15% Similarity=0.007 Sum_probs=45.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
..++.+.+++.+.++.. +|+|.+|=.-| -++-+.+......-++..|+--+.+.+.+-...|++-.
T Consensus 198 eVEv~tleea~ea~~~g---aDiI~LDn~s~----e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 198 EVEVDTLDQLEEALELG---VDAVLLDNMTP----DTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEeCCCCH----HHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEE
Confidence 35789999999998653 89999995333 23333333222222477888888888888888888643
No 344
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=30.53 E-value=2.5e+02 Score=31.04 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 005938 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (668)
Q Consensus 34 irVLIVDDDp~-----ire~Lk~lL~~~gy~V~ta---------sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe 99 (668)
-|+|||-|... ..+.+...|+..+.++..+ .+..++.+.+++.. +|+||. ..+.+-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48999988654 3356777777766665544 33457777777765 999885 35656666665
Q ss_pred HH
Q 005938 100 HI 101 (668)
Q Consensus 100 ~I 101 (668)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 54
No 345
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.52 E-value=1.6e+02 Score=31.60 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCcEEEEe------ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 95 FKLLEHIG-LEMDLPVIMMS------ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 95 ~ELLe~Ir-~~~~IPVIILS------a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+|+++++| ....+|+|+|+ .+.......+|-+.|+++.|+-.+..++-......+.+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 346
>PHA01976 helix-turn-helix protein
Probab=30.41 E-value=58 Score=26.42 Aligned_cols=33 Identities=3% Similarity=-0.016 Sum_probs=24.9
Q ss_pred hHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 247 PKRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 247 PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
+++|.++....|+|..++|.++|.+ .++++++.
T Consensus 4 ~~rl~~~R~~~glt~~~lA~~~gvs-~~~v~~~e 36 (67)
T PHA01976 4 AIQLIKARNARAWSAPELSRRAGVR-HSLIYDFE 36 (67)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHH
Confidence 3567777788999999999999964 45555544
No 347
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.31 E-value=5.3e+02 Score=26.29 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 005938 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (668)
Q Consensus 66 g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~i 145 (668)
..+..+.+.. .|++++-....+.-|+.+++.+. ..+|||.--. . ...+.+..|..+|+..+ .++|.+.
T Consensus 234 ~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~---~~~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 234 GAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-G---AVPEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred HHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-C---CchhheeCCCcEEEeCC--HHHHHHH
Confidence 3444455543 57777755444555777777764 4578774322 2 23455677888999987 8888888
Q ss_pred HHHHH
Q 005938 146 WQHVV 150 (668)
Q Consensus 146 Lq~Vl 150 (668)
+..+.
T Consensus 302 l~~l~ 306 (335)
T cd03802 302 VARAD 306 (335)
T ss_pred HHHHh
Confidence 87763
No 348
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=30.22 E-value=3.9e+02 Score=28.03 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=61.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
.+++|+.+.+.. +.+++ ...-.|... -+.++..+.+.. .|++++-.. +.-|+-+++.+. ..+|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEE
Confidence 567777766542 23333 112233333 344556666653 477776544 333555666654 4678876
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
..... ..+.+..|..+++..|-+.++|.+.+..++..
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 43322 23445667789999999999999999887653
No 349
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.15 E-value=1.9e+02 Score=28.41 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 005938 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (668)
Q Consensus 49 Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MPd-----mDG~ELLe~Ir---~~~~IPVIILSa~sd~ 118 (668)
+.+.|+..|+.+.. +..+...++.+.... ||.|-+|..+.. .....+++.+. ...+++ +++++-++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCH
Confidence 34445566887765 445666677777665 999999964421 22345555552 234455 456777888
Q ss_pred HHHHHHHHcCCc----EEEeCCCCHH
Q 005938 119 SAVMRGIRHGAC----DYLIKPIREE 140 (668)
Q Consensus 119 e~a~kAl~~GA~----dYLlKPis~e 140 (668)
+....+.++|++ .|+.||...+
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCCC
Confidence 888899999985 3677887643
No 350
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.05 E-value=1.7e+02 Score=28.26 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=43.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHHcCCCceEEEEeCCCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tas----ng~EALelLre~~~~PDLVIlDI~MPd 91 (668)
-.|-+|+|+.......+-|..+|.+.+..|+.|. +..++ ++. -|||++-.--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hhh----CCEEEEecCCCC
Confidence 3567999999999999999999999999999888 44433 322 699999886664
No 351
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.02 E-value=4.7e+02 Score=26.16 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=52.7
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 57 gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
-.-|....+.+++++.++..- .-.+=++.+++...+..++++.+++. +.+.+=.-|- -..+.+..|++.||+..++-
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtv-l~~d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTI-LTLEDLEEAIAAGAQFCFTP 91 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEE-EcHHHHHHHHHcCCCEEECC
Confidence 345667788888888776531 12344677778888889998888643 2221111111 12267888999999877665
Q ss_pred CCCHHHHH
Q 005938 136 PIREEELK 143 (668)
Q Consensus 136 Pis~eEL~ 143 (668)
-++.+.+.
T Consensus 92 ~~~~~~~~ 99 (187)
T PRK07455 92 HVDPELIE 99 (187)
T ss_pred CCCHHHHH
Confidence 55655443
No 352
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=30.02 E-value=4e+02 Score=34.53 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=67.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhcc
Q 005938 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGLE 104 (668)
Q Consensus 34 irVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MP-dmDG-~ELLe~Ir~~ 104 (668)
-+|++. |-+..=...+.-+|+..||+|+-.. ..++.++.+++.+ +|+|-+-..|. .+.. .++++.|++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467777 6666666777777888899998544 4678888888776 99999987664 3443 3466777643
Q ss_pred -CCCcEEEEeccCCHHHHHH---HHHcCCcEEEeCCC
Q 005938 105 -MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKPI 137 (668)
Q Consensus 105 -~~IPVIILSa~sd~e~a~k---Al~~GA~dYLlKPi 137 (668)
.++||++=-+-.+.+++.. ....||+.|-.-..
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 5677776555555555432 12338888776443
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=29.96 E-value=5e+02 Score=29.75 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=31.1
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---CCHH----HHHHHHHHcCCCceEEEEeC
Q 005938 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTC---SQAA----VALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 33 girVLIVDDDp~i---re~Lk~lL~~~gy~V~ta---sng~----EALelLre~~~~PDLVIlDI 87 (668)
+.+|++|+-|..- .+.|+.+.+..+..+... .+.. ++++..+.. .+|+||+|.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDT 191 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDT 191 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeC
Confidence 7899999998532 233444444556555543 2333 333333333 489999997
No 354
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.85 E-value=5.2e+02 Score=28.22 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=58.6
Q ss_pred cEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCC
Q 005938 34 LRVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDM 92 (668)
Q Consensus 34 irVLIV--DDDp~i---re~Lk~lL~~~gy~V~tasng~EALel----------------Lre~~~~PDLVIlDI~MPdm 92 (668)
.+|+|+ -+.+.. .+.|...|...++.|.........+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 457777 233333 344555555667777765443222210 0111123677776 366
Q ss_pred CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 93 DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 93 DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
|| +..++.+. ...+||+-+- .|-.+||.- +..+++..+++++++..+
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 88 33333332 3567877543 366788884 788999999999887654
No 355
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.77 E-value=1.7e+02 Score=28.70 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEEEe--ccCCHHHHHHHHHcCCcEEEeCCCCH
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIMMS--ADGRVSAVMRGIRHGACDYLIKPIRE 139 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~-~~IPVIILS--a~sd~e~a~kAl~~GA~dYLlKPis~ 139 (668)
+.++++++++...+. +-.+.+.+|- ..|++.++.+++. +++|+++.. .......+..+.++||+..+.-....
T Consensus 11 ~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 445555555544322 2234443332 3578889988754 678877632 22222346778999998776644332
Q ss_pred -HHHHHHHHH
Q 005938 140 -EELKNIWQH 148 (668)
Q Consensus 140 -eEL~~iLq~ 148 (668)
+.+...++.
T Consensus 89 ~~~~~~~i~~ 98 (202)
T cd04726 89 LSTIKKAVKA 98 (202)
T ss_pred HHHHHHHHHH
Confidence 344444443
No 356
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=29.59 E-value=47 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
++|.+++..-|+|.+++|..+|.+ .++++++.
T Consensus 2 ~~lk~~r~~~~lt~~~~a~~~~i~-~~~i~~~e 33 (64)
T PF12844_consen 2 ERLKELREEKGLTQKDLAEKLGIS-RSTISKIE 33 (64)
T ss_dssp HHHHHHHHHCT--HHHHHHHHTS--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 356677777899999999999984 44444444
No 357
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.59 E-value=3.5e+02 Score=27.81 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=45.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHH
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eE 141 (668)
...+.+++++.++.... --+=++++-|-.-+.++.++++++...--+|=.-+--+.+.+.++++.||. ||.-|.-..+
T Consensus 11 r~~~~~~a~~ia~al~~-gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~ 88 (201)
T PRK06015 11 LIDDVEHAVPLARALAA-GGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQE 88 (201)
T ss_pred EcCCHHHHHHHHHHHHH-CCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHH
Confidence 34445555544433210 112244555555567888888864322122323344677889999999996 6777765555
Q ss_pred HHH
Q 005938 142 LKN 144 (668)
Q Consensus 142 L~~ 144 (668)
+.+
T Consensus 89 vi~ 91 (201)
T PRK06015 89 LLA 91 (201)
T ss_pred HHH
Confidence 544
No 358
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.39 E-value=6.1e+02 Score=27.33 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~----~g--y~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
.|||=|.+-.+.-.+...+.. .+ ..| .++.+.+++.+.+.. .+|.|.+|- =|.+.++++.+....
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 466666665554444444432 22 223 478899999888753 389999973 245666666433223
Q ss_pred cE-EEEeccCCHHHHHHHHHcCCcEEE
Q 005938 108 PV-IMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 108 PV-IILSa~sd~e~a~kAl~~GA~dYL 133 (668)
|+ |..++--+.+.+.+..+.|++..-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 33 445666788888899999998753
No 359
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=29.17 E-value=7.1e+02 Score=28.19 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=36.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eE-------------------EEECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-------------------TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy-~V-------------------~tasng~EALelLre~~~~PDLVIlDI~MPd 91 (668)
..||||||..--.-.....++.+.-.+ .+ ....+.++.++.+++.. +|+|+....-|-
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHH
Confidence 348999998876555554444443111 11 11246666777777665 999998765544
Q ss_pred CCHH
Q 005938 92 MDGF 95 (668)
Q Consensus 92 mDG~ 95 (668)
..|+
T Consensus 81 ~~gl 84 (426)
T PRK13789 81 VAGF 84 (426)
T ss_pred HHHH
Confidence 4443
No 360
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.13 E-value=6.1e+02 Score=30.34 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=60.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++||.|.+. +..++..+...+. .|.......+.-..+.. .|+.++-.. -+.-|..+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH--hCCCEE
Confidence 356777766543 4455555555443 35444444444343332 577766332 2334666777664 468888
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq 147 (668)
..- ... ..+.+..|.++|+..|.+.+.|.+.+.
T Consensus 501 ATd-vGG---~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 501 STP-AGG---SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred EeC-CCC---cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 433 222 345567899999999998888776653
No 361
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=29.01 E-value=62 Score=32.63 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
+.+++.++..+ ||.|=+ ||+ =-.++++++++.-++|||.=---.+.+.+.+|+++||...
T Consensus 107 ~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 107 ETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 46777787766 997755 788 5557778877777889775333467888999999999864
No 362
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=28.90 E-value=4.7e+02 Score=26.89 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHh
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG 102 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir 102 (668)
+.+|..||-.+...+..++.+...+. .+. ...+..+..... . ..+|+|++..-+..+ +-.++++.+.
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~--~~fD~V~~~~vl~~~~~~~~~l~~~~ 136 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-E--TPVDLILFHAVLEWVADPKSVLQTLW 136 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-C--CCCCEEEehhHHHhhCCHHHHHHHHH
Confidence 57899999999999998888876553 233 344555433222 2 349999987544322 3345566653
No 363
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.84 E-value=4.5e+02 Score=27.06 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=50.1
Q ss_pred eEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 59 ~V~tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
-|....+.+++++.++.. ...+++|=+.+ -.-+.++.++++++. +++. |-.-.--+.+.+.++++.||. ||.-|
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCC-EEECC
Confidence 455666777777665542 12255444444 445688888888743 4433 223334677889999999996 66667
Q ss_pred CCHHHHHH
Q 005938 137 IREEELKN 144 (668)
Q Consensus 137 is~eEL~~ 144 (668)
....++.+
T Consensus 88 ~~~~~v~~ 95 (204)
T TIGR01182 88 GLTPELAK 95 (204)
T ss_pred CCCHHHHH
Confidence 65554443
No 364
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.66 E-value=4.9e+02 Score=27.68 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH-HHHHHhccCC
Q 005938 35 RVLVVDDDITCLRILEQML----RRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL----~~~g---y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~E-LLe~Ir~~~~ 106 (668)
.|||-|++..+...+...+ +..+ .....+.+.+++.+.+... +|+|.+|-.-|+ .+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~g---aD~I~ld~~~~e--~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG---ADIIMLDNMSPE--ELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCHH--HHHHHHHHhccCCC
Confidence 4666666644433333222 2222 2335788999999987643 899999875442 222 2333333235
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
+| |+.++--+.+.+.+....||+.+-
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 55 556777788889999999998764
No 365
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=28.66 E-value=4.6e+02 Score=26.97 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=57.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++|+.+.+.. +.+++.+...+ ..|.......+..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4667777655432 34445554432 234444433344444432 4776664332 223566667664 467877
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+ +.... ..+.+.. .+++..+-+.+++.+.+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 4 32222 2222222 5788889999999999988763
No 366
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.64 E-value=2.9e+02 Score=32.91 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=52.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.++++.++|.|+...+.+++ .++.+..-+ +-.+.|+...-. ..|+||+-+.=++. -..++..+|+ .++++|
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~--~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 422 SGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDPQT-SLQLVELVKEHFPHLQI 494 (621)
T ss_pred CCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCCC--cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeE
Confidence 35678888888876555443 466654322 112344433322 37777776633222 3445555653 477777
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEE
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYL 133 (668)
|+-+ .+.+...+..+.||+..+
T Consensus 495 iaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 495 IARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEE--CCHHHHHHHHHCCCCEEe
Confidence 6644 445667777788888543
No 367
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=28.56 E-value=41 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=19.2
Q ss_pred HHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 264 VASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 264 VAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
+|.++|. +.+++.+.||+.+|+|+..
T Consensus 1 lA~~~~~-s~~~l~~~f~~~~g~s~~~ 26 (81)
T PF12833_consen 1 LADELGM-SERYLSRIFKKETGMSFKQ 26 (81)
T ss_dssp HHHHCTS--HHHHHHHHHHHHSS-HHH
T ss_pred ChHHhCc-CHHHHHHHHHHHHCcCHHH
Confidence 4666665 5689999999999999863
No 368
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=28.55 E-value=6.3e+02 Score=26.46 Aligned_cols=76 Identities=11% Similarity=0.019 Sum_probs=39.2
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 34 LRVLVVDDDI----TCLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 34 irVLIVDDDp----~ire~Lk~lL~~~gy~V~t-------asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
-||.++.++. .....++..+++.+.+|.. ..+....+..++... +|+|++.. ...+...+++.++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~--~~~~~~~~~~~~~ 217 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAG--HFPDAVLLVRQMK 217 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHH
Confidence 4555553332 2344555556666666532 134445555555543 78877654 2335566667665
Q ss_pred cc-CCCcEEEEe
Q 005938 103 LE-MDLPVIMMS 113 (668)
Q Consensus 103 ~~-~~IPVIILS 113 (668)
.. ...+++..+
T Consensus 218 ~~g~~~~~~~~~ 229 (345)
T cd06338 218 ELGYNPKALYMT 229 (345)
T ss_pred HcCCCCCEEEEe
Confidence 32 344555443
No 369
>PRK00811 spermidine synthase; Provisional
Probab=28.54 E-value=4e+02 Score=28.28 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~------gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPd 91 (668)
+..-+|.+||=|+.+.+..++.+... .-.|. ...++.+.+.. ....+|+||+|.--|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 33458999999999999999988642 12332 45566654432 3345999999985553
No 370
>PRK04457 spermidine synthase; Provisional
Probab=28.54 E-value=6e+02 Score=26.69 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~-tasng~EALelLre~~~~PDLVIlDI 87 (668)
..+|.+||=++.+.+..++.+.... -.+. .+.++.+.+.. ....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeC
Confidence 4789999999999999888875422 2333 45677666553 233599999996
No 371
>PRK08185 hypothetical protein; Provisional
Probab=28.53 E-value=2e+02 Score=31.13 Aligned_cols=84 Identities=17% Similarity=0.350 Sum_probs=58.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---------C-CCCCCHHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCcE
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDV---------H-MPDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACD 131 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI---------~-MPdmDG~ELLe~Ir~~~~IPVIILSa~-sd~e~a~kAl~~GA~d 131 (668)
.++.++|.+.++... .|.+-+-+ . -|+.+ ++++++|++..++|+++.-+. ...+..++|++.|+.-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 457889999888654 78777733 1 25566 999999987778999887665 3466788899999764
Q ss_pred EEeCCCCHHHHHHHHHHHHHHh
Q 005938 132 YLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 132 YLlKPis~eEL~~iLq~Vlrk~ 153 (668)
.=. -.+|+.++.+.++..
T Consensus 225 iNi----~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 INI----SSDMKYAFFKKVREI 242 (283)
T ss_pred EEe----ChHHHHHHHHHHHHH
Confidence 322 245666665555543
No 372
>PF13518 HTH_28: Helix-turn-helix domain
Probab=28.39 E-value=93 Score=23.71 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.5
Q ss_pred HHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHh
Q 005938 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 284 (668)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~ 284 (668)
|++++. .|.++.+||.++|. +.+-.+++.|++-
T Consensus 5 iv~~~~-~g~s~~~~a~~~gi-s~~tv~~w~~~y~ 37 (52)
T PF13518_consen 5 IVELYL-EGESVREIAREFGI-SRSTVYRWIKRYR 37 (52)
T ss_pred HHHHHH-cCCCHHHHHHHHCC-CHhHHHHHHHHHH
Confidence 445555 46699999999999 5566677777774
No 373
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.36 E-value=7.9e+02 Score=26.65 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHH--H--HHHHHHHh----CCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 35 RVLVVDDDITCL--R--ILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 35 rVLIVDDDp~ir--e--~Lk~lL~~----~gy---~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
.|||=|.+-.+. - .+...+.. ..+ ...++.+.+++.+.+... +|+|.+|=.-|+ +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~g---aDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAG---VDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcC---CCEEEECCCCHH-HHHHHHHHhC-
Confidence 366666665542 1 24454433 332 235799999999988643 899999953322 2223333333
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCcE
Q 005938 104 EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl~~GA~d 131 (668)
...+|-.|+--+.+.+.+-...|++-
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~ 261 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDV 261 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 23367788888888888888888764
No 374
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.34 E-value=3.3e+02 Score=29.07 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 95 ~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
++.+.++++.. ++|||...+-.+.+.+.+.+..||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67777886544 8999999999999999999999998643
No 375
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=28.30 E-value=66 Score=26.02 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.6
Q ss_pred HHHHHh-cCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 249 RILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 249 kILeLL-~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
+|+++| ...++++.+||+.+|..... .++.++++
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t-~s~hL~~L 48 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQST-VSYHLKKL 48 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHH-HHHHHHHH
Confidence 577777 88999999999999975444 55566665
No 376
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.16 E-value=4.4e+02 Score=28.64 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=58.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE------EC---CHHHHHHHHHHcCCCceEEEEeCCC-CC-C---CHHHHHHHHh
Q 005938 37 LVVDDDITCLRILEQMLRRCLYNVTT------CS---QAAVALDILRERKGCFDVVLSDVHM-PD-M---DGFKLLEHIG 102 (668)
Q Consensus 37 LIVDDDp~ire~Lk~lL~~~gy~V~t------as---ng~EALelLre~~~~PDLVIlDI~M-Pd-m---DG~ELLe~Ir 102 (668)
.++.|.....+.++.+.....+.|.. -. +..+..+.+.+.. .|.|.+.-+. ++ . -.++++++++
T Consensus 113 ~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G--~d~i~vh~rt~~~~~~G~a~~~~i~~ik 190 (321)
T PRK10415 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG--IQALTIHGRTRACLFNGEAEYDSIRAVK 190 (321)
T ss_pred HHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhC--CCEEEEecCccccccCCCcChHHHHHHH
Confidence 35556666666666665554443331 11 2233334444433 6877665433 21 1 2378888888
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHH-cCCcEEE
Q 005938 103 LEMDLPVIMMSADGRVSAVMRGIR-HGACDYL 133 (668)
Q Consensus 103 ~~~~IPVIILSa~sd~e~a~kAl~-~GA~dYL 133 (668)
+..++|||..-.-.+.+.+.++++ .||+...
T Consensus 191 ~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 191 QKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 777899998877788899999997 5888764
No 377
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=28.10 E-value=7.3e+02 Score=26.23 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=60.1
Q ss_pred ccEEEEEe---CCHHHHHHHHHHHHhCCC---eEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 33 GLRVLVVD---DDITCLRILEQMLRRCLY---NVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIVD---DDp~ire~Lk~lL~~~gy---~V~ta---sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
..+++|+- +.+...+.+++.+..... .|... -+..+..+.+.. .|++++=.. .+.-|+-+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a- 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA- 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH-
Confidence 34555542 233444555555544322 13322 234445555432 477766322 2334566666653
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCH------HHHHHHHHHHHH
Q 005938 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE------EELKNIWQHVVR 151 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~------eEL~~iLq~Vlr 151 (668)
..+|||. |.... ..+.+..|..+++.+|-+. ++|.+.+.+++.
T Consensus 303 -~G~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 -CGTPVVA-SATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred -cCCCEEE-eCCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 4678775 33322 4455677889999999887 888888877654
No 378
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.00 E-value=8.5e+02 Score=26.92 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=60.1
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC--H
Q 005938 35 RVLVVDDD----ITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (668)
Q Consensus 35 rVLIVDDD----p~ire~Lk~lL~~~g-y~V--~tasng~EALelLre~~~~PDLVIlDI~MP-----------dmD--G 94 (668)
.++++|-- ....+.++.+-+... ..| ..+.+.+.|..+++.. .|.|.+-+.-. +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG---ad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccceeeeccCCCchH
Confidence 56666652 344444555444332 222 1245777777776543 67776442111 111 3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 45566666556799999888888999999999999987653
No 379
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.94 E-value=2.8e+02 Score=26.01 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=45.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC---C-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRC---L-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~---g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
-+.||.||+..+..|++--... + ....+--...++++.+++.. |++ .|--.+|-++++++.. .+-|++
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la--pgl-----~l~P~sgddLa~rL~l-~hYPvL 97 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA--PGL-----PLLPVSGDDLAERLGL-RHYPVL 97 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--CCC-----cccCCCHHHHHHHhCC-CcccEE
Confidence 4899999999998888776543 1 11212223356777777654 554 4445689999999953 456766
Q ss_pred EE
Q 005938 111 MM 112 (668)
Q Consensus 111 IL 112 (668)
|.
T Consensus 98 it 99 (105)
T TIGR03765 98 IT 99 (105)
T ss_pred Ee
Confidence 53
No 380
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=27.94 E-value=5.3e+02 Score=27.20 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=37.4
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
-|+-+++.+. ..+|||..-...- ..+.+..|..+|+..|-+.++|..++..++..
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3555555553 4678776432111 23456778899999999999999999888753
No 381
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.77 E-value=3.5e+02 Score=28.85 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE------EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEE
Q 005938 41 DDITCLRILEQMLRRC-LYNVT------TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 41 DDp~ire~Lk~lL~~~-gy~V~------tasng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~~~IPVIIL 112 (668)
|.....+.++.+++.. +..++ .+.+..+|++.+.+.. +|=||+-=.-+. .+|++.++++.+...-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4466677777777765 34443 3568889999888875 999998766654 689999998854322245666
Q ss_pred eccCCHHHHHHHHHcCCcEEE
Q 005938 113 SADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYL 133 (668)
-+--..+.+.+....|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 555566666666678888775
No 382
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=27.57 E-value=1.9e+02 Score=30.13 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHH-cCCCceEEEEeCCCCC
Q 005938 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHMPD 91 (668)
Q Consensus 29 ~fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~tasng~EALelLre-~~~~PDLVIlDI~MPd 91 (668)
..|..-++.-||-++...+.-++.+++.+.. |..... -+|++.+.. ....||+|++|..=+.
T Consensus 80 ~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 80 ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhh
Confidence 3453449999999999999999999998653 333331 334444443 2345999999986544
No 383
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=27.43 E-value=1.1e+02 Score=30.20 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHH
Q 005938 233 FVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFR 277 (668)
Q Consensus 233 Fv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFr 277 (668)
+-+++.++.--.-.-.++++|+...|+|.+|||.++|.+-..-.+
T Consensus 126 l~e~l~~L~~l~~~~~~~v~l~~~~Gls~~EIA~~lgiS~~tV~r 170 (185)
T PF07638_consen 126 LEEALERLLALDPRQRRVVELRFFEGLSVEEIAERLGISERTVRR 170 (185)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHH
Confidence 444555443211112578888889999999999999997555443
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.43 E-value=5.2e+02 Score=29.70 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=51.2
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeCCCCCCCH--HHHHH
Q 005938 32 AGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVHMPDMDG--FKLLE 99 (668)
Q Consensus 32 ~girVLIVDDDp~ir---e~Lk~lL~~~gy~V~tas---ng----~EALelLre~~~~PDLVIlDI~MPdmDG--~ELLe 99 (668)
.+.+|+||+-|+.-. +.|+.+-+..+..+.... +. .++++.++... +|+||+|.- +... -++++
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~--~DvViIDTa--Gr~~~d~~lm~ 202 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN--FDIIIVDTS--GRHKQEDSLFE 202 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCC--CCEEEEECC--CCCcchHHHHH
Confidence 367999999886432 223333333344444332 22 24555555433 899999973 3221 23445
Q ss_pred HHhc-----cCCCcEEEEeccCC--HHHHHHHHH--cCCcEEEeCCCC
Q 005938 100 HIGL-----EMDLPVIMMSADGR--VSAVMRGIR--HGACDYLIKPIR 138 (668)
Q Consensus 100 ~Ir~-----~~~IPVIILSa~sd--~e~a~kAl~--~GA~dYLlKPis 138 (668)
+++. .++..+.++.+... .....++|. .+..+.|+-=++
T Consensus 203 El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 203 EMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred HHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECcc
Confidence 4431 23333445554322 223445553 456666443333
No 385
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=27.33 E-value=90 Score=31.87 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=43.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCCCCHHH--HHHHHhccCCCcE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGFK--LLEHIGLEMDLPV 109 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD-I-~MPdmDG~E--LLe~Ir~~~~IPV 109 (668)
|||||+|........+...|...++.+..+......+....+....+|-||+- = ..|..++.+ +++++. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999988888888889888887765544322111122111237866652 1 123323333 333332 246887
Q ss_pred EEE
Q 005938 110 IMM 112 (668)
Q Consensus 110 IIL 112 (668)
+-+
T Consensus 80 LGI 82 (214)
T PRK07765 80 LGV 82 (214)
T ss_pred EEE
Confidence 644
No 386
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.13 E-value=5.9e+02 Score=27.23 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=46.9
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~M-----PdmDG~ELLe~Ir~~--~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+.+.++|..+.+. ..|.|.+.-+- .+...++++.++++. .++|||.--+-.+...+.+++.+||+....
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3555565554432 26877775432 123456777777543 269999888889999999999999998644
No 387
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=27.03 E-value=3.7e+02 Score=34.96 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=65.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhc-
Q 005938 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL- 103 (668)
Q Consensus 34 irVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MP-dmDG-~ELLe~Ir~- 103 (668)
-+|++. |-+..=...+.-+|+..||+|+-.. ..++.++.+++.+ +|+|.+-.-|. .+.. .++++.|++
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 467777 6666777777888888899997544 4577888888776 99999987664 3433 446777764
Q ss_pred cCCCcEEEEeccCCHHH-HHHH-HH-cCCcEEEeCC
Q 005938 104 EMDLPVIMMSADGRVSA-VMRG-IR-HGACDYLIKP 136 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~-a~kA-l~-~GA~dYLlKP 136 (668)
..++||++--+..+... +.+. -. .||+.|-.-.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 35677776544444322 1111 11 2888776643
No 388
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=26.87 E-value=6e+02 Score=25.38 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|..+++.+. ..+|||. |.... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 455556553 4578775 33222 2344566778899999999999999888654
No 389
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.77 E-value=2.3e+02 Score=30.48 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=58.2
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---C-----CCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCcEEE
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDV---H-----MPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI---~-----MPdmDG~ELLe~Ir~~~~IPVIILSa-~sd~e~a~kAl~~GA~dYL 133 (668)
+++.++|.+.+++.. +|.+-..+ + -|.. +++++++|++..++|+++.-+ .-+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 558889999887544 78777542 1 1334 489999998777899877653 3456678899999998875
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 005938 134 IKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 134 lKPis~eEL~~iLq~Vlrk~ 153 (668)
.- .+|+.++.+.+++.
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 42 35666666655544
No 390
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=26.66 E-value=4.8e+02 Score=28.81 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 80 FDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 80 PDLVIlDI~MPdm-DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.|+|++|+.-... .-++.+++|++....|+|+.-.-...+.+..+++.||+....-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 5999999855443 4567888887655566666554678899999999999987643
No 391
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=26.65 E-value=8.2e+02 Score=26.25 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=55.8
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 33 girVLIV-DDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
.++++++ .++...++.+++.....+-.|....-..+..+++.. -|+++++ + -|.-++|.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 4666554 555556666766665443334444433333344432 4888763 2 2555666653 4678776
Q ss_pred EeccC--CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 112 MSADG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 112 LSa~s--d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..... ..+.+....+.|+ ...+-+.++|.+.+.+++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 43222 1222222234454 3335678888888887764
No 392
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.61 E-value=7.5e+02 Score=25.80 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=37.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc----CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD----GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~----sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlr 151 (668)
.|++++.- + +.-+++.+. ..+|+|+.... .......+.+..+-.+++..+- +.++|.+++..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam~--~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA--LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH--hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 57777632 1 344555553 57888875422 1111122333333467888775 89999998887764
No 393
>PRK04296 thymidine kinase; Provisional
Probab=26.60 E-value=56 Score=32.48 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=41.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeC-CCCCCC-HHHHHHHHhccCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDV-HMPDMD-GFKLLEHIGLEMDL 107 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI-~MPdmD-G~ELLe~Ir~~~~I 107 (668)
.+.+|+++...-..+.....++...+..+. .+....+.++.+++....+|+|++|= ++-+.+ -.++++.++ ...+
T Consensus 29 ~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~-~~g~ 107 (190)
T PRK04296 29 RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLD-DLGI 107 (190)
T ss_pred cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHH-HcCC
Confidence 467888884311222333334444444332 35566777777654223489999995 332211 344555543 2455
Q ss_pred cEEEE
Q 005938 108 PVIMM 112 (668)
Q Consensus 108 PVIIL 112 (668)
.||+.
T Consensus 108 ~vi~t 112 (190)
T PRK04296 108 PVICY 112 (190)
T ss_pred eEEEE
Confidence 55543
No 394
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.53 E-value=4.1e+02 Score=28.04 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=54.7
Q ss_pred hCCCeEEEECCHH--------HHH-HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH
Q 005938 55 RCLYNVTTCSQAA--------VAL-DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (668)
Q Consensus 55 ~~gy~V~tasng~--------EAL-elLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl 125 (668)
+.+..|..+.++. .+. +++++.. ||.||.=---|..-|-.-.+++-...++|.|+++.-. ...+.+.+
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~~--pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP-g~~vkdel 105 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEFN--PDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP-GLKVKDEL 105 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc-cchhHHHH
Confidence 3467777666552 222 3455554 9999987766777888888888777899999887544 44566777
Q ss_pred HcCCcEEEeCCC
Q 005938 126 RHGACDYLIKPI 137 (668)
Q Consensus 126 ~~GA~dYLlKPi 137 (668)
+-.-.+||+-+.
T Consensus 106 eeqGlGYIivk~ 117 (277)
T COG1927 106 EEQGLGYIIVKA 117 (277)
T ss_pred HhcCCeEEEecC
Confidence 777777866544
No 395
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=26.50 E-value=2.8e+02 Score=28.55 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~MPd-mDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+..+.++.+.+.. .-.+|++|+.--+ +.| ++++++++...++|+|.--+-.+.+.+.++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45667777776653 3479999996654 333 5677888655689999888888999999999999988775
No 396
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=26.38 E-value=4.5e+02 Score=26.06 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=50.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+.+.+|+.+.++.. +|+|-++- .+.. |.++++.++.. +.+|++.+-+- +.+.+.+.++.|++..-.-
T Consensus 102 ~gv~t~~e~~~A~~~G---ad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 102 PGVATPTEIMQALELG---ADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCcCCHHHHHHHHHCC---CCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 3566889988887543 79998853 3333 89999998743 46887766554 7888999999998776543
No 397
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=26.23 E-value=1.5e+02 Score=28.55 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 31 P~girVLIVDDDp~i---------re~Lk~lL~~~-gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
...++|.|||.|... -+.+.+.|... .+.+.. .+.++|.+.++..+ .+.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 456899999888654 34455555543 455443 48899999998765 776654
No 398
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.19 E-value=4.4e+02 Score=29.03 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 34 irVLIVDDDp~----ire~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
-|+|||-|... ..+.+...|+..+..+..+. ...++.+.+++.. +|.||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 37898877644 33557777777676665443 2356777777665 898875 356566666665
Q ss_pred H
Q 005938 101 I 101 (668)
Q Consensus 101 I 101 (668)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 399
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.19 E-value=4.4e+02 Score=29.32 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 34 irVLIVDDDp~----ire~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
-|+|||-|... ..+.+...|+..+..+..++ +.+++.+.+++.. +|.||- ..+.+-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999987633 34567777877666655443 3457777887765 999875 356666666665
Q ss_pred H
Q 005938 101 I 101 (668)
Q Consensus 101 I 101 (668)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 400
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=26.16 E-value=7.1e+02 Score=25.50 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=42.3
Q ss_pred ceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 80 PDLVIlDI~MP-----dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
-|++++-..-+ +.-|..+++.+. ..+|+|. +.... ..+.++.+..+++.+|-+.++|.+.+..++.
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46666533321 222556666653 4678775 32222 3345677888999999999999999988764
No 401
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=26.12 E-value=6.7e+02 Score=25.04 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-----EC---CHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHhccCC
Q 005938 40 DDDITCLRILEQMLRRCLYNVTT-----CS---QAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIGLEMD 106 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~t-----as---ng~EALelLre~~~~PDLVIlDI~M----P-dmDG~ELLe~Ir~~~~ 106 (668)
.+.....+.++.+-+..++.+.. .. +..+.++.+.+.. .|.|.+.-.. + ..-.++.++++++..+
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAG--ASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhC--CCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 34444555555554444432221 11 2233344444433 6777654432 1 1234778888887788
Q ss_pred CcEEEEeccCCHHHHHHHHHc-CCcEE
Q 005938 107 LPVIMMSADGRVSAVMRGIRH-GACDY 132 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~-GA~dY 132 (668)
+|||.--+-.+.+.+.+++.. ||+..
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 999887777789999999998 67654
No 402
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=26.07 E-value=7.2e+02 Score=26.54 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=46.8
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
..++.+.+++.+.++. ..|.|.+|-.-|. +--++++.++.. +++|++ .++--+.+.+.+..+.|++.+..
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~-AsGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPPVLLA-AAGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCCceEE-EECCCCHHHHHHHHHcCCcEEEE
Confidence 3578899999988753 3799999954443 222344445433 467655 45556778888999999987643
No 403
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=26.07 E-value=6.1e+02 Score=26.73 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=74.4
Q ss_pred CccEEEEEeCCHHHHH--HHHHHHHhC---C-CeEEEECCHHHHHHHHHHcCCCceEEEEeC-------CCCCCCHHHHH
Q 005938 32 AGLRVLVVDDDITCLR--ILEQMLRRC---L-YNVTTCSQAAVALDILRERKGCFDVVLSDV-------HMPDMDGFKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~ire--~Lk~lL~~~---g-y~V~tasng~EALelLre~~~~PDLVIlDI-------~MPdmDG~ELL 98 (668)
.|..|+-+|--..-|- .+.+++... + .-..-|++.+|++...+.. +|+|=+-+ ..|...-|+++
T Consensus 97 ~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G---~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 97 AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLG---FDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcC---CcEEecccccccCCCCCCCCCcHHHH
Confidence 4677777775422111 233444332 2 2334688999999877643 78775432 23444558999
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC-C-CHHHHHHHHHHH
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-I-REEELKNIWQHV 149 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP-i-s~eEL~~iLq~V 149 (668)
+++.+ .+++||.=-.+...+.+.+++++||+....=- + +++++......+
T Consensus 174 k~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ 225 (229)
T COG3010 174 KQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDA 225 (229)
T ss_pred HHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHH
Confidence 99865 77889988888999999999999999886654 2 455655544443
No 404
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.04 E-value=3.3e+02 Score=27.69 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe------
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MP---dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl------ 134 (668)
+..+..+.+.... ++ |+++|+..- ..-.++++++++...++|||+--+-.+.+.+.+....||+..+.
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 4455555554432 45 666676321 12346788888766789999988888888899999999998654
Q ss_pred CCCCHHHHHH
Q 005938 135 KPIREEELKN 144 (668)
Q Consensus 135 KPis~eEL~~ 144 (668)
.|+..+++..
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4555555443
No 405
>PRK05670 anthranilate synthase component II; Provisional
Probab=25.97 E-value=89 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
|||||-.-.+-..+.+.|.+.++.+..........+.+.... ||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALN--PDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCC--CCEEEE
Confidence 899999999999999999998888776554321122223333 787666
No 406
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.85 E-value=9.5e+02 Score=26.92 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~M-------PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+..+.+.+.. .|+|.++-+. +..+..++.+.++. .++|||. -.-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666554 8999997643 11255666565554 5788876 4456678889999999998754
No 407
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.82 E-value=6.5e+02 Score=25.19 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=35.7
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|..+++.+. ..+|+|. +.... ..+.+..+..+++.++-+.+++.+.+..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~-~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVA-TDVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEE-ecCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 344444442 4677764 33222 34456778888999999999999999887654
No 408
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.68 E-value=4.9e+02 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=36.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g-----y~V~-tasng~EALelLre~~~~PDLVIlDI~MP 90 (668)
.-+|.+||-++...+..++.+.... -.+. ...++.+.++. ....+|+||+|.--|
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---~~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---TENTFDVIIVDSTDP 156 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---CCCCccEEEEeCCCC
Confidence 3579999999999888888775421 1222 33555555443 234599999997544
No 409
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=25.63 E-value=8e+02 Score=27.27 Aligned_cols=107 Identities=12% Similarity=0.182 Sum_probs=62.7
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 33 GLRVLVVDDDI-----TCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 33 girVLIVDDDp-----~ire~Lk~lL~~~gy--~V~tasn--g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
.++++|+.+.. ...+.|+++.+..+. .|..... .++..++++. -|++|.-.. .+-=|+-++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~-~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMW-NEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCc-cCCcccHHHHHHH-
Confidence 47888886542 355666666665443 3544443 4555555543 477665322 2323666777664
Q ss_pred cCCCcEEEEeccCCHHHHHHHHH---cCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 104 EMDLPVIMMSADGRVSAVMRGIR---HGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl~---~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..+|+|........ .+.+. .|..+|+.. +.+++.+.+.+++.
T Consensus 347 -~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCc---hheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 35676653322222 22344 688899963 89999999988875
No 410
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.48 E-value=3.4e+02 Score=29.54 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTT--------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 34 irVLIVDDDp~i---re~Lk~lL~~~gy~V~t--------asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
-|+|||-|.... .+.+...|+..+..+.. ..+..++.+.+++.. +|+||. +.+..-+++++.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 588888876543 33445555555544321 133456777777655 898876 57777788888775
Q ss_pred ccCCCcEEEEec
Q 005938 103 LEMDLPVIMMSA 114 (668)
Q Consensus 103 ~~~~IPVIILSa 114 (668)
....+|+|.+-.
T Consensus 98 ~~~~~P~iaIPT 109 (351)
T cd08170 98 DYLGAPVVIVPT 109 (351)
T ss_pred HHcCCCEEEeCC
Confidence 445678776543
No 411
>PRK14967 putative methyltransferase; Provisional
Probab=25.43 E-value=6.1e+02 Score=25.55 Aligned_cols=47 Identities=26% Similarity=0.121 Sum_probs=31.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEe
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlD 86 (668)
+|..+|-++...+..+..+...+..+. ...+..+. +.. ..+|+||++
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~--~~fD~Vi~n 108 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEF--RPFDVVVSN 108 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccC--CCeeEEEEC
Confidence 899999999888888777766555443 23343332 222 349999998
No 412
>PLN02823 spermine synthase
Probab=25.40 E-value=1.6e+02 Score=32.48 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=37.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-----gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP 90 (668)
..+|.+||=|+.+.+..++.+... .-.+. ...|+.+.+ +.....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 358999999999999999888542 12232 455666555 33344599999997444
No 413
>PRK05637 anthranilate synthase component II; Provisional
Probab=25.36 E-value=1.1e+02 Score=31.09 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=35.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
-||||||...-+...|...|+..++.+..+..... ++.+.... ||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~~--~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAAN--PDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhcC--CCEEEE
Confidence 47999999999999999999998887776655322 23233333 787777
No 414
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.33 E-value=3.8e+02 Score=27.73 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=52.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~MP---dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+..+..+.+.... .-.|.|.|+.-- ...-+++++++++..++||++--+-.+.+.+.+++..||+..++-
T Consensus 29 ~~d~~~~a~~~~~~G-~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 29 AGDPVELAKRYNEEG-ADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred cCCHHHHHHHHHHcC-CCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 346666666666542 235788888632 233467888887767899999888899999999999998887654
No 415
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=25.28 E-value=1.6e+02 Score=35.40 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=49.4
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhccC-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELL-e~Ir~~~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+-|+|+| ++|-..+.+..+ +.|.+-+ ++.+|+.| .+...+...+..-+.-|=.||++.+++...+.++++.
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T--t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec--CCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence 47788887 566555566644 4443322 34455544 3445566778878889999999999999999888754
No 416
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.25 E-value=5.1e+02 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 95 ~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
++.+++++... ++|||..-+-.+.+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776544 799999988899999999999998754
No 417
>PLN02335 anthranilate synthase
Probab=25.16 E-value=83 Score=32.37 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=43.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-CCC-CCCCHHHHHHHHhc-cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD-I~M-PdmDG~ELLe~Ir~-~~~IPV 109 (668)
.-+|||||..--+-..|.+.|+..++.+.++......++.+.... ||.||+- =-| |...+ ...+.++. ...+||
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~--~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKN--PRGVLISPGPGTPQDSG-ISLQTVLELGPLVPL 94 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcc-chHHHHHHhCCCCCE
Confidence 458999997667777888999888888776654211122233333 7766653 222 22222 12333432 345787
Q ss_pred EEE
Q 005938 110 IMM 112 (668)
Q Consensus 110 IIL 112 (668)
+-+
T Consensus 95 LGI 97 (222)
T PLN02335 95 FGV 97 (222)
T ss_pred EEe
Confidence 643
No 418
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.11 E-value=7.8e+02 Score=25.45 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=57.8
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCC---
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI--- 137 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~MP--dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi--- 137 (668)
..+..+..+.+.... .-.|.|+|+.-. ..+-++++++|.+...+|+.+=-+-.+.+.+.+.+..||+-...--.
T Consensus 31 ~~dp~~~a~~~~~~g-~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 31 YGSPLDAALAWQRDG-AEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred CCCHHHHHHHHHHCC-CCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 446666666665533 234888888532 23346888888766678999888889999999999999987665432
Q ss_pred CHHHHHHHHHH
Q 005938 138 REEELKNIWQH 148 (668)
Q Consensus 138 s~eEL~~iLq~ 148 (668)
+++.+.++++.
T Consensus 110 ~p~l~~~i~~~ 120 (241)
T PRK14024 110 NPEWCARVIAE 120 (241)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 419
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.76 E-value=4.6e+02 Score=28.96 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 34 irVLIVDDDp~i----re~Lk~lL~~~gy~V~tasn---------g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
-|+|||-|.... .+.++..|+..+..+..+.. .+++.+.+++.. +|+||- ..+..-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 379999876543 34577777766666655533 346667777655 899875 356566666665
Q ss_pred H
Q 005938 101 I 101 (668)
Q Consensus 101 I 101 (668)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 420
>PRK10060 RNase II stability modulator; Provisional
Probab=24.72 E-value=6.2e+02 Score=30.12 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHh---ccCCCcEEEEeccCC
Q 005938 48 ILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGR 117 (668)
Q Consensus 48 ~Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~M----P-dmDG~ELLe~Ir---~~~~IPVIILSa~sd 117 (668)
.+...|+..|+.+.. +..+-..+..++... +|.|=+|-.. . +.....+++.|- ...++.|| ..+-.+
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVEt 621 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVET 621 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCCC
Confidence 334556667887754 677788888888876 9999999532 2 223455666552 23456655 456667
Q ss_pred HHHHHHHHHcCCcE----EEeCCCCHHHHHHHHHH
Q 005938 118 VSAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (668)
Q Consensus 118 ~e~a~kAl~~GA~d----YLlKPis~eEL~~iLq~ 148 (668)
.+....+.+.|++. |+.||...+++...+++
T Consensus 622 ~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 622 AKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred HHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 77777778889863 58899999999876644
No 421
>PLN00191 enolase
Probab=24.70 E-value=4.8e+02 Score=30.12 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCcE-EEeCCCCHHHH
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACD-YLIKPIREEEL 142 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa-~sd~e~a~kAl~~GA~d-YLlKPis~eEL 142 (668)
+.++++++++.....++|+.+.=-++..| ++-.++|++...+||+.==. ..+...+.++++.++++ +++|+-...-|
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IEDPl~~~D-~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGI 374 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIEDPFDQDD-WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTV 374 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEECCCCccc-HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCH
Confidence 77888888887555578877765554433 55566676555666543011 14577788999988766 57888766655
Q ss_pred HHHHHH
Q 005938 143 KNIWQH 148 (668)
Q Consensus 143 ~~iLq~ 148 (668)
..+++.
T Consensus 375 Tea~~~ 380 (457)
T PLN00191 375 TESIEA 380 (457)
T ss_pred HHHHHH
Confidence 555543
No 422
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.68 E-value=3.2e+02 Score=28.25 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..++++.+.+.- -.+|++|+.--+ +.|++ +..+...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3456666665542 479999997766 47877 222222579999888888999999999999998765
No 423
>PHA02943 hypothetical protein; Provisional
Probab=24.67 E-value=89 Score=31.14 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc--hhHHHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRL 283 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D--~qYFrk~FKK~ 283 (668)
+.|||+|..+..|.+|||.++|-+. .+|+-+.+-|.
T Consensus 14 ~eILE~Lk~G~~TtseIAkaLGlS~~qa~~~LyvLErE 51 (165)
T PHA02943 14 IKTLRLLADGCKTTSRIANKLGVSHSMARNALYQLAKE 51 (165)
T ss_pred HHHHHHHhcCCccHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4688999777888999999999965 45556666665
No 424
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.64 E-value=2.2e+02 Score=30.69 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=57.2
Q ss_pred EEEEE--eCCHHHHH---HHHHHHHhCCCeEEEECCHHHHHHH-------HHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 35 RVLVV--DDDITCLR---ILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 35 rVLIV--DDDp~ire---~Lk~lL~~~gy~V~tasng~EALel-------Lre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+|+|+ -+.+...+ .+...|...++.+.........+.. .......+|+||+ -+.||- +++.++
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 34444444 4444455557777654433222210 0111123688776 366773 334443
Q ss_pred c--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 103 ~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
. ..++||+-+- .|-.+||. .++.+++...+++++...+
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 2 2467877443 35567877 6888999999998876653
No 425
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.40 E-value=6.7e+02 Score=26.97 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=56.6
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHHcCCCceEEEEeCCCCC--C---CHHHHHHHHhc
Q 005938 38 VVDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMPD--M---DGFKLLEHIGL 103 (668)
Q Consensus 38 IVDDDp~ire~Lk~lL~~~gy~V~t-a-----s---ng~EALelLre~~~~PDLVIlDI~MPd--m---DG~ELLe~Ir~ 103 (668)
+..+-....+.++.+-+..++.|.. . . +..+..+.+.+.. .|.|.+.-+.+. . --++.+++|++
T Consensus 112 l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 112 LLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG--AQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred HhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC--CCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 3444455555666555444444321 1 1 1234444454433 687776543321 1 13677888877
Q ss_pred cCCCcEEEEeccCCHHHHHHHH-HcCCcEEE
Q 005938 104 EMDLPVIMMSADGRVSAVMRGI-RHGACDYL 133 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl-~~GA~dYL 133 (668)
..++|||..-+-.+.+.+.+++ ..||+...
T Consensus 190 ~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 190 AVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 7779999988888999999999 46777653
No 426
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=24.36 E-value=1e+02 Score=23.72 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
+|+.+|....+++.|||+++|.+ ..-.+++++++
T Consensus 6 ~Il~~L~~~~~~~~el~~~l~~s-~~~vs~hL~~L 39 (47)
T PF01022_consen 6 RILKLLSEGPLTVSELAEELGLS-QSTVSHHLKKL 39 (47)
T ss_dssp HHHHHHTTSSEEHHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHhcccc-chHHHHHHHHH
Confidence 57777888889999999999873 33444455544
No 427
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=24.34 E-value=3.5e+02 Score=30.21 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEe-ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~E-LLe~Ir~~~~IPVIILS-a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
.|.+|++..-+..=-+| ++..+ .....||... ..++...+...++.|+++.+++|-++.+++++...+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 46777765433332333 33333 2344454433 3345556778889999999999999999988776653
No 428
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=24.31 E-value=5.5e+02 Score=28.18 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=40.6
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCcE------EEeC-CCCHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACD------YLIK-PIREEELKNIWQHVVR 151 (668)
Q Consensus 95 ~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~GA~d------YLlK-Pis~eEL~~iLq~Vlr 151 (668)
++.++++++.. ++|||..-+-.+.+.+.+.+..||+. ++.+ |.-..++++-+++.++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556665443 79999999999999999999999874 3454 6655666665555544
No 429
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=24.29 E-value=6e+02 Score=27.84 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 005938 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (668)
Q Consensus 34 irVLIVDDDp~ir-----e~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe 99 (668)
-|+|||-|..... +.+...|...+..+..+. +..++.+.+++.. +|+||. ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5899998876522 557777877666655443 2446777777765 898876 45666666666
Q ss_pred HH
Q 005938 100 HI 101 (668)
Q Consensus 100 ~I 101 (668)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 44
No 430
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=24.24 E-value=2.4e+02 Score=26.77 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI 87 (668)
++.+|.++.+.. ..+.+...... ...+..+.+..++++++...+ .|.+|.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 456888888855 44445554433 577788999999999999776 99999985
No 431
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.24 E-value=1.5e+02 Score=29.78 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
|||+|||-.--....+.+.|++.++++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999988889999999999999887765322 11 3788877
No 432
>PF13941 MutL: MutL protein
Probab=24.20 E-value=1.2e+03 Score=27.19 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=72.1
Q ss_pred CccEEEEEeCCHHHHHH-HHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHHHHHHHh-c
Q 005938 32 AGLRVLVVDDDITCLRI-LEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFKLLEHIG-L 103 (668)
Q Consensus 32 ~girVLIVDDDp~ire~-Lk~lL~~~gy~V~---tasng~EALelLre~~~~PDLVIlDI~MPdmD---G~ELLe~Ir-~ 103 (668)
.|+|++++-=.+..-.. -++.-...|-.|. ...-.++-++.+++.+ ||+||+-=-..+.| .++.++.|. .
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 46898888766544333 3333333455543 3333456677777665 99999953333333 244555564 3
Q ss_pred cCCCcEEEEeccCCHHHHHHHHH-cCCcEEEeCCC-------CHHHHHHHHHHHHHHhh
Q 005938 104 EMDLPVIMMSADGRVSAVMRGIR-HGACDYLIKPI-------REEELKNIWQHVVRKRW 154 (668)
Q Consensus 104 ~~~IPVIILSa~sd~e~a~kAl~-~GA~dYLlKPi-------s~eEL~~iLq~Vlrk~~ 154 (668)
...+|||+--...-.+.+.+.+. .|..-|++.-+ +.+-.+.+|+.+..++.
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~I 211 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHI 211 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHH
Confidence 45788877666666677778887 66666776543 34445667766665543
No 433
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=24.18 E-value=58 Score=26.05 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
+|.++|..-|++.+++|...|.+. +.+.++++
T Consensus 1 ~L~~~m~~~~it~~~La~~~gis~-~tl~~~~~ 32 (63)
T PF13443_consen 1 KLKELMAERGITQKDLARKTGISR-STLSRILN 32 (63)
T ss_dssp HHHHHHHHTT--HHHHHHHHT--H-HHHHHHHT
T ss_pred CHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHh
Confidence 466888999999999999998743 44555544
No 434
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.14 E-value=1.7e+02 Score=26.67 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=11.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE
Q 005938 40 DDDITCLRILEQMLRRCLYNVT 61 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~ 61 (668)
|.+......+...|...||.+.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~ 29 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLF 29 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 4444444455555556677764
No 435
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.10 E-value=3.5e+02 Score=26.57 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---C-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC---L-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~---g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.-+.||.||+..+..|+.-..+. + ....+=-.-.++|+.+++.. +.+-| --.+|-++++++.. .+-||
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la--pgl~l-----~P~sgddLA~rL~l-~HYPv 134 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA--PGLPL-----LPVSGDDLARRLGL-SHYPV 134 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--CCCee-----cCCCHHHHHHHhCC-CcccE
Confidence 45899999999999888776543 1 11111123356777777654 55444 34589999999953 45676
Q ss_pred EE
Q 005938 110 IM 111 (668)
Q Consensus 110 II 111 (668)
+|
T Consensus 135 LI 136 (142)
T PF11072_consen 135 LI 136 (142)
T ss_pred Ee
Confidence 65
No 436
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.05 E-value=4.4e+02 Score=27.30 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHH---cCCcEEEe------
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR---HGACDYLI------ 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~---~GA~dYLl------ 134 (668)
.+.++.+.+.. --.|+++|+..-++ --+++++++++..++|||.--+-.+.+.+.++.+ .||++.+.
T Consensus 149 ~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 149 WEVLERLDSAG-CSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred HHHHHHHHhcC-CCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 44555554432 13588889855332 1377888887767899998776778888877753 49988654
Q ss_pred CCCCHHHHHHH
Q 005938 135 KPIREEELKNI 145 (668)
Q Consensus 135 KPis~eEL~~i 145 (668)
.+++.++++..
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 46666666544
No 437
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.84 E-value=6.2e+02 Score=30.17 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=42.9
Q ss_pred CCCCCCCccccccccCC--CCCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 005938 12 GGSGYGSSRAADVAVPD--QFPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 12 gGs~~~~~~~~d~~~~e--~fP~girVLIVDDDp~i---re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlD 86 (668)
|.+|.|++.+.-..... ....+.+|.+|+-|..- .+.++.+-...++.+..+.+..+..+.++... .+|+||+|
T Consensus 357 GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLID 435 (559)
T PRK12727 357 GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLID 435 (559)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEec
Confidence 33566666643222111 11234689998877522 23333333344666777777777777766543 48999999
Q ss_pred C
Q 005938 87 V 87 (668)
Q Consensus 87 I 87 (668)
.
T Consensus 436 T 436 (559)
T PRK12727 436 T 436 (559)
T ss_pred C
Confidence 7
No 438
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.78 E-value=2.8e+02 Score=29.23 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH
Q 005938 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (668)
Q Consensus 46 re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl 125 (668)
-..|.++.++.|.......-..++++.+.+. ++-..-|--.+.+-+.|++++.+ ...|||+=|+-.+.+++.+|+
T Consensus 58 ~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av 132 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAV 132 (241)
T ss_dssp HHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHH
Confidence 3445666666677766555556777777653 34455555567788999999965 678999999988887777665
Q ss_pred ----HcCCcEEEe------CCCCHHHHH
Q 005938 126 ----RHGACDYLI------KPIREEELK 143 (668)
Q Consensus 126 ----~~GA~dYLl------KPis~eEL~ 143 (668)
+.|..+..+ -|..++++.
T Consensus 133 ~~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 133 EVLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 345655432 366666654
No 439
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.56 E-value=3.8e+02 Score=26.32 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=56.8
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 005938 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (668)
Q Consensus 49 Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MPd-----mDG~ELLe~Ir---~~~~IPVIILSa~sd~ 118 (668)
....|...|+.+.. +..+..-+..+.... ||.|-+|..+-. .....+++.+. ....+. ++.++-++.
T Consensus 138 ~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 214 (241)
T smart00052 138 TLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVETP 214 (241)
T ss_pred HHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCCH
Confidence 34455666887654 455566677777665 999999965421 11334555552 234455 446777888
Q ss_pred HHHHHHHHcCCc----EEEeCCCCHH
Q 005938 119 SAVMRGIRHGAC----DYLIKPIREE 140 (668)
Q Consensus 119 e~a~kAl~~GA~----dYLlKPis~e 140 (668)
+....+.+.|++ .|+.||...+
T Consensus 215 ~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 215 EQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHcCCCEEeeceeccCCCCC
Confidence 888888999986 3577886543
No 440
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.55 E-value=2.5e+02 Score=33.71 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred CceEEEEe-CCCCCCCHHHHHHH-HhccC-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 79 CFDVVLSD-VHMPDMDGFKLLEH-IGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELLe~-Ir~~~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+.|+|+| ++|-..+.+..+.+ |.+-+ .+.+|+.| .+...+...+..-+.-|-.||++.+++...+++++.+
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T--td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT--TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE--CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH
Confidence 37888887 56655555554433 33322 34455555 3444455667777888999999999999999887764
No 441
>PLN02476 O-methyltransferase
Probab=23.52 E-value=3.3e+02 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~--~~~PDLVIlDI~ 88 (668)
.|..-+|.-+|-++...+..++.+++.++. |. ...++.+.|..+... ...||+|++|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 444557999999999999999999988763 43 456777777655321 235999999985
No 442
>PRK13695 putative NTPase; Provisional
Probab=23.51 E-value=4.5e+02 Score=25.22 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCceEEEEeC--CCCCCCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC--CcEEEeCCCCHHHHHHHHHHH
Q 005938 78 GCFDVVLSDV--HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG--ACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 78 ~~PDLVIlDI--~MPdmDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~G--A~dYLlKPis~eEL~~iLq~V 149 (668)
..+|++|+|- .+...+. .+++..+- ....|+|+++-........+.+..- ..=|-..|-+.++|...+...
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 3589999996 3322221 23333332 3457887777654433333334332 333455677788877766543
No 443
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.48 E-value=7.1e+02 Score=27.17 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=37.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe-----EEEECCHHHHHHHHHHcCCCceEEEEe
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN-----VTTCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~-----V~tasng~EALelLre~~~~PDLVIlD 86 (668)
|...=|||=+|.|+..++.=-+.-++.+.. |.+-.-.+....++++.+ |||+++-
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViT 160 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVIT 160 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEEe
Confidence 544558999999998766554444554443 334445567777888776 9988873
No 444
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=23.46 E-value=3.1e+02 Score=32.00 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=38.1
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 80 FDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 80 PDLVIlDI~MPd-mDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.|+|.+|.--.. ..-++++++||. .++++||+ -.-...+.+..+++.||+....
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 899999994211 123478888875 35666553 3456778899999999997754
No 445
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.37 E-value=3.2e+02 Score=31.10 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=40.4
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 80 FDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 80 PDLVIlDI~MPd-mDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
.|+|.+|.--+. ..-.+++++|+.. ++++|| +-.-...+.+..++++||+...
T Consensus 166 vDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 166 VDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 899999997764 4566888888754 577644 4455677889999999998754
No 446
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=23.37 E-value=4.1e+02 Score=28.55 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=47.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH--HHHHHHhccCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF--KLLEHIGLEMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~-V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~--ELLe~Ir~~~~IP 108 (668)
+.+|+-||-++...+..++.++..+.. +. .+.+..+.... ....||+|++| |-..|+ ++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 458999999999998888888766542 33 45566554421 12249999999 334443 5666664322223
Q ss_pred EEEEecc
Q 005938 109 VIMMSAD 115 (668)
Q Consensus 109 VIILSa~ 115 (668)
||.+|..
T Consensus 269 ivyvsc~ 275 (315)
T PRK03522 269 ILYSSCN 275 (315)
T ss_pred EEEEECC
Confidence 5555543
No 447
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=23.32 E-value=92 Score=33.09 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=26.4
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
...+++++|+++|.+ ..+|.+.||+. |+|+.
T Consensus 149 ~~~tl~~LA~~~gmS-~s~l~R~FK~~-G~T~~ 179 (253)
T PRK09940 149 HPWKLKDICDCLYIS-ESLLKKKLKQE-QTTFS 179 (253)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHc-CCCHH
Confidence 458999999999874 46999999997 98875
No 448
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=23.19 E-value=1.6e+02 Score=28.70 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=31.9
Q ss_pred hHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccc
Q 005938 226 SVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEI 271 (668)
Q Consensus 226 k~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~ 271 (668)
..+....+.+++..+--+. +.++.|.-..|++..|||+.+|.+
T Consensus 125 ~~~~~~~l~~~l~~L~~~~---r~v~~l~~~~g~s~~eIA~~lgis 167 (193)
T PRK11923 125 RDEIEGTVHRTIQQLPEDL---RTALTLREFDGLSYEDIASVMQCP 167 (193)
T ss_pred HHHHHHHHHHHHHhCCHHH---hHHHhhHHhcCCCHHHHHHHHCCC
Confidence 3455667777887774432 346677678999999999999986
No 449
>CHL00101 trpG anthranilate synthase component 2
Probab=23.18 E-value=1.1e+02 Score=30.55 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
|||||..-.+-..|.+.|+..++.+..+......+..+.... ||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLN--IRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCC--CCEEEE
Confidence 899999999999999999998888877664432222232223 787775
No 450
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=22.88 E-value=1.1e+02 Score=23.49 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHhcCCCCCHHHHHhhhcccchhHHHHHHHH
Q 005938 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKR 282 (668)
Q Consensus 252 eLL~v~gLti~EVAshVGy~D~qYFrk~FKK 282 (668)
+.|...|++..+||..+|.+- +=.++.+||
T Consensus 14 ~~l~~~G~s~~~IA~~lg~s~-sTV~relkR 43 (44)
T PF13936_consen 14 EALLEQGMSIREIAKRLGRSR-STVSRELKR 43 (44)
T ss_dssp HHHHCS---HHHHHHHTT--H-HHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCc-HHHHHHHhc
Confidence 334578999999999999742 333444443
No 451
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.81 E-value=7.9e+02 Score=25.32 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=59.2
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc-EEE-EeccCCHHHHHHHHH
Q 005938 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP-VIM-MSADGRVSAVMRGIR 126 (668)
Q Consensus 51 ~lL~~~g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~-~IP-VII-LSa~sd~e~a~kAl~ 126 (668)
+.|...+ .-|....+.++++.+++... .--+=++.+-|-.-+.++.++.|++.. +-| +++ .-+--+.+.+.+|++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3344433 45667778888887776532 123446666666677999999997543 222 333 334567888999999
Q ss_pred cCCcEEEeCCCCHHHHHHH
Q 005938 127 HGACDYLIKPIREEELKNI 145 (668)
Q Consensus 127 ~GA~dYLlKPis~eEL~~i 145 (668)
.||. ||.-|.-..++.+.
T Consensus 87 aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9996 67778666665543
No 452
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.74 E-value=3.7e+02 Score=28.95 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=51.1
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeC--CC---CC--CCHHHHHHHHhccCCCcEEEEeccC-CHHHHHHHHHcCCcEEE
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDV--HM---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI--~M---Pd--mDG~ELLe~Ir~~~~IPVIILSa~s-d~e~a~kAl~~GA~dYL 133 (668)
.+++.++|.+..+... .|.+-+-+ -- ++ .=|++.+++|++..++|++++-+.. ..+.+.++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 3678899988886543 78777633 11 11 2379999999877789988776443 66778899999998764
Q ss_pred e
Q 005938 134 I 134 (668)
Q Consensus 134 l 134 (668)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 453
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.71 E-value=2.1e+02 Score=29.55 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=38.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCce--EEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD--VVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PD--LVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
+++|-||+||||- +++=.+..+|++.+++....+. ++++|-. +-.++......+
T Consensus 109 ~~~G~kVvvVEDV-----------------iTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-------~~~~~~~~~~g~ 164 (201)
T COG0461 109 EVKGEKVVVVEDV-----------------ITTGGSILEAVEALREAGAEVVGVAVIVDRQ-------SGAKEVLKEYGV 164 (201)
T ss_pred CCCCCEEEEEEec-----------------ccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-------hhHHHHHHhcCC
Confidence 4578899999992 3344556677788877653332 5667765 222333334567
Q ss_pred cEEEEeccCCH
Q 005938 108 PVIMMSADGRV 118 (668)
Q Consensus 108 PVIILSa~sd~ 118 (668)
|++-+...++.
T Consensus 165 ~~~sl~tl~dl 175 (201)
T COG0461 165 KLVSLVTLSDL 175 (201)
T ss_pred ceEEEeeHHHH
Confidence 77655555444
No 454
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=22.69 E-value=8.7e+02 Score=27.11 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHH----hc-----cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHH
Q 005938 88 HMPDMDGFKLLEHI----GL-----EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (668)
Q Consensus 88 ~MPdmDG~ELLe~I----r~-----~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~e 140 (668)
+..+.|-.|.++.+ ++ ...+.+|++++.+..+..+++++-|.+-.++|--+..
T Consensus 105 RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~~~~p~~~~n~~~~ 166 (337)
T COG2247 105 RIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKEGIVPVILKNTSIL 166 (337)
T ss_pred EecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhcCcceeEecccccc
Confidence 45677889988876 21 1346899999999988888999999999999875544
No 455
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=22.68 E-value=2.1e+02 Score=28.45 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 94 GFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 94 G~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
--++++.+++ .+..+.|.+ .-.+.+.+.+|++.|++-..+--+++++++++++.+
T Consensus 66 i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 3456666753 344442333 334578899999999999999999999999999877
No 456
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=22.52 E-value=1.4e+02 Score=26.97 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=33.7
Q ss_pred HHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHH
Q 005938 232 QFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLY 279 (668)
Q Consensus 232 tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~ 279 (668)
.+..+|+++. ....+.||++.=..+++.++||..++|+...||+..
T Consensus 47 ei~~~I~~l~--d~~~r~iL~~~Yi~~~~~~~I~~~l~~S~~t~yr~~ 92 (100)
T PF07374_consen 47 EIRRAINKLE--DPDERLILRMRYINKLTWEQIAEELNISRRTYYRIH 92 (100)
T ss_pred HHHHHHHHcc--ChhHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3556666653 222255776655679999999999999999988876
No 457
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.49 E-value=2.6e+02 Score=28.94 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCceEEEEeC-----CCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 005938 69 ALDILRERKGCFDVVLSDV-----HMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 69 ALelLre~~~~PDLVIlDI-----~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~k 123 (668)
|.+++... .+||||+|- +..-.+--|+++.|+..|.--=||+|++.-.....+
T Consensus 114 a~~~l~~~--~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 114 AKEALADG--KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred HHHHHhCC--CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 34445443 499999994 222345556777776666655677888766554443
No 458
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.40 E-value=8.9e+02 Score=25.17 Aligned_cols=79 Identities=9% Similarity=-0.082 Sum_probs=48.0
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 35 RVLVV-DDDIT---CLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 35 rVLIV-DDDp~---ire~Lk~lL~~~gy~V~t-------asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
||.|+ +|++. ..+.++..+++.+..|.. ..+....+..++... ||+|++-.. ..++..++++++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG--PDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEecc--cchHHHHHHHHHH
Confidence 55544 44443 344566667777776542 346667777777655 999987643 3378888888864
Q ss_pred c-CCCcEEEEeccCC
Q 005938 104 E-MDLPVIMMSADGR 117 (668)
Q Consensus 104 ~-~~IPVIILSa~sd 117 (668)
. ...+++..++..+
T Consensus 215 ~G~~~~~~~~~~~~~ 229 (312)
T cd06346 215 QGLFDKFLLTDGMKS 229 (312)
T ss_pred cCCCCceEeeccccC
Confidence 3 4556665444333
No 459
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.35 E-value=2.5e+02 Score=34.22 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=48.7
Q ss_pred CceEEEEe-CCCCCCCHHHHHHH-Hhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 79 CFDVVLSD-VHMPDMDGFKLLEH-IGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 79 ~PDLVIlD-I~MPdmDG~ELLe~-Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
.+.|+|+| ++|-...++..+.+ |.+. ..+.+|+.| .+...+...+...+.-|=.||++.+++...+.+++.+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT--td~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT--TDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE--CChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 36899988 66655556664444 4432 235566555 33444455566667788899999999999999887653
No 460
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=22.23 E-value=2.6e+02 Score=30.21 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=50.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHH-HcCCCceEEEE-eCCCCCC--CHHHHHHHHhccCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILR-ERKGCFDVVLS-DVHMPDM--DGFKLLEHIGLEMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tas--ng~EALelLr-e~~~~PDLVIl-DI~MPdm--DG~ELLe~Ir~~~~ 106 (668)
...|++++|-......+ ..+.- .-.+..+. +..+..+.+. .....-+++++ |.-+|.. -|.++++.++. .+
T Consensus 37 ~aDvI~~edtr~t~~ll-~~~~i-~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~-~g 113 (287)
T PRK14994 37 AVDLIAAEDTRHTGLLL-QHFAI-NARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCRE-AG 113 (287)
T ss_pred hCCEEEEeCCcchHHHH-hhcCC-CCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHH-CC
Confidence 35688999887554332 22221 11222222 2333333222 21223587777 9999975 59999999875 37
Q ss_pred CcEEEEeccCCHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kA 124 (668)
++|.++-+-+.+..+..+
T Consensus 114 i~v~vIPGiSA~~aA~a~ 131 (287)
T PRK14994 114 IRVVPLPGPCAAITALSA 131 (287)
T ss_pred CCEEEeCCHHHHHHHHHH
Confidence 888888776665444433
No 461
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.22 E-value=1.6e+02 Score=22.44 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=22.8
Q ss_pred HHHHHHh-cCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 248 KRILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 248 KkILeLL-~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
++|+.+| ..+++++.+||..+|.+ ...-++++|+.
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is-~~tv~~~l~~L 41 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGIS-RSTVNRYLKKL 41 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHHH
Confidence 3556444 56889999999999964 44555555554
No 462
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.20 E-value=4.1e+02 Score=26.47 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEE
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~~~IPVIIL 112 (668)
++++...+.++..+....+.+..+.+..+ ++.........|.+++|..-++ .-++++++.++ ..+|+++.
T Consensus 82 ~e~~~~~~~l~~~~~~~~i~~i~~~~~~~-~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~Pvila 158 (203)
T cd00405 82 DESPEYCAQLRARLGLPVIKAIRVKDEED-LEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILA 158 (203)
T ss_pred CCCHHHHHHHHhhcCCcEEEEEecCChhh-HHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEE
Q ss_pred eccCCHHHHHHHHHcC-CcEE
Q 005938 113 SADGRVSAVMRGIRHG-ACDY 132 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~G-A~dY 132 (668)
-+- +.+.+.++++.+ +++.
T Consensus 159 GGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 159 GGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred CCC-ChHHHHHHHHhcCCCEE
No 463
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.19 E-value=3.3e+02 Score=31.35 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
.++.+.+.+.. .|+|.+|..-.. ..-+++++.|+.. +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 34444444443 899999975333 3456778888754 5788776 555678889999999998764
No 464
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.07 E-value=4.3e+02 Score=27.88 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~---~~~PDLVIlDI~ 88 (668)
.|..-+|.-+|-++...+.-+..++..++ .|. ...++.+.|..+... ...||+|++|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45556899999999999988999988764 343 466777777766432 235999999986
No 465
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=21.90 E-value=8.8e+02 Score=24.94 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++||.+-+. ...++..++..+. .|......++..+.+.. .|++++-... +.-|+.++|.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 467777765443 2334444443322 23333323333344432 4777754432 233666666663 468887
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
. |..... .+.+.. ...|+..+-+++++.+++.+++..
T Consensus 295 ~-s~~~~~---~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 295 L-SDTITK---EVDLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred E-EcCCch---hhhhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 5 333332 233444 457888777889999999988764
No 466
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=21.87 E-value=6.4e+02 Score=28.25 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=55.7
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDD-p~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
++++|+.+- +...+.++.+.......+.... +.+++..++.. .|++++-.. -+--|+-+++.+. ..+|+|
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~-~E~~gl~~lEAma--~G~pvI 393 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAG----ADFILMPSR-FEPCGLTQLYAMR--YGTVPI 393 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh----CCEEEeCCC-cCCcHHHHHHHHH--CCCCeE
Confidence 556666443 3344455555444332332221 22222233321 466665322 1223555555543 356665
Q ss_pred EEeccCCHHHHHHHHHcC------CcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHG------ACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~G------A~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+ +.... ..+.+..| ..+++..|.+.++|..++.+++..
T Consensus 394 ~-s~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 394 V-RRTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred E-ccCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 4 32222 22233444 789999999999999999887753
No 467
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.83 E-value=3.2e+02 Score=28.19 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCCcEEE---E--eccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVIM---M--SADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~~~IPVII---L--Sa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
+..++++.+.+.. .+++.+|+.++- .-|.++++.|++. +.+|++ + .......++..+.+.||+-+..-+.
T Consensus 13 ~~~~~l~~~~~~~--~~~~~ikvg~~~f~~~G~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 13 SKEEALAFLDQLD--PAVLFVKVGMELFTAGGPQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred CHHHHHHHHHhcC--CcccEEEEcHHHHHhcCHHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEccc
Confidence 4567777776654 566677776653 2467777777643 223322 1 1223334566678888888877776
Q ss_pred CHHH
Q 005938 138 REEE 141 (668)
Q Consensus 138 s~eE 141 (668)
.-.+
T Consensus 90 ag~~ 93 (230)
T PRK00230 90 GGPR 93 (230)
T ss_pred CCHH
Confidence 5444
No 468
>PRK10742 putative methyltransferase; Provisional
Probab=21.80 E-value=4.1e+02 Score=28.40 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=41.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------C----CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC------L----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~------g----y~V~-tasng~EALelLre~~~~PDLVIlDI~MPdm 92 (668)
.|.+|..||.++.+...|+.-|+.. + -.+. ...+..+.|.. ....||+|.+|=+-|.-
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 3678999999999999999999873 1 1222 34555565554 33359999999988874
No 469
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.77 E-value=5.3e+02 Score=28.12 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=58.4
Q ss_pred EEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCCC
Q 005938 35 RVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDMD 93 (668)
Q Consensus 35 rVLIV--DDDp~i---re~Lk~lL~~~gy~V~tasng~EALel----------------Lre~~~~PDLVIlDI~MPdmD 93 (668)
+|.|+ .+.+.. ...+...|...++.+....+..+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46666 333433 345555565668877654432222210 0111113677776 3667
Q ss_pred HHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 94 GFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 94 G~ELLe~Ir~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
| -+++..+. ..++||+-+. .|-.+||.- +..+++...++++++..+
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCc
Confidence 7 34455542 3578877553 366788884 678999999999887654
No 470
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.75 E-value=9.9e+02 Score=25.46 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred ChHHHHHHHHcCCCCCCCccccccccCCCCCCccEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Q 005938 1 MAALQRIVQSSGGSGYGSSRAADVAVPDQFPAGLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCSQAAVALDIL 73 (668)
Q Consensus 1 la~~~~lv~~~gGs~~~~~~~~d~~~~e~fP~girVLIVDDD-------p~ire~Lk~lL~~~gy~V~tasng~EALelL 73 (668)
+....+-+-..||..--+....|. |||.|++ ....+.+++.+........+|.+.+++.+.+
T Consensus 131 ~r~~~k~Av~~GGg~~HR~~L~d~-----------vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~ 199 (268)
T cd01572 131 LRLLEKYAVRCGGGDNHRFGLSDA-----------VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEAL 199 (268)
T ss_pred hHHHHHHHHHhCCCccccCCCcce-----------eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Q ss_pred HHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 74 re~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
... +|.|.+|-.-| |.++++.... ++| |+.++--+.+.+.+..+.|++..
T Consensus 200 ~~g---aDyI~ld~~~~-----e~l~~~~~~~~~~ip-i~AiGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 200 EAG---ADIIMLDNMSP-----EELREAVALLKGRVL-LEASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred HcC---CCEEEECCcCH-----HHHHHHHHHcCCCCc-EEEECCCCHHHHHHHHHcCCCEE
No 471
>PRK00654 glgA glycogen synthase; Provisional
Probab=21.73 E-value=6.6e+02 Score=28.27 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=59.7
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 33 girVLIVDDD-p~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.++++|+.+. +...+.++++.+..+..+... -+.+.+-.++. . -|++++--. -+.=|+-+++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~-~---aDv~v~PS~-~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA-G---ADMFLMPSR-FEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh-h---CCEEEeCCC-CCCchHHHHHHHH--CCCCE
Confidence 4667777553 445566666665544333321 12222222222 2 577776432 2334566666654 35666
Q ss_pred EEEeccCCHHHHHHHHHcC------CcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHG------ACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~G------A~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|+ +..... .+.+..| ..+|+..|-+.++|...+.+++.
T Consensus 384 V~-~~~gG~---~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IV-RRTGGL---ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EE-eCCCCc---cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 65 332221 2233344 77999999999999999988765
No 472
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.68 E-value=1.4e+02 Score=31.26 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-------CCeEEEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRC-------LYNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMD 93 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~-------gy~V~tasng~EALelLre~~~-~PDLVIlDI~MPdmD 93 (668)
+...+|-+||=|+.+.+..++.+... ...+ ...++...++. ... .+|+||+|+--|...
T Consensus 98 ~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~---~~~~~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 98 PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKE---TQEEKYDVIIVDLTDPDGP 164 (246)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHT---SSST-EEEEEEESSSTTSC
T ss_pred CCcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHh---ccCCcccEEEEeCCCCCCC
Confidence 33468999999999999999887642 1233 56666655553 333 599999999777643
No 473
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=21.66 E-value=8.4e+02 Score=27.31 Aligned_cols=78 Identities=17% Similarity=0.022 Sum_probs=47.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY-NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy-~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmD-G~ELLe~Ir~~~~IPVI 110 (668)
-+|+-||-++...+..++-+...+. .+. ...+..+.+..+......+|+||+|- |... ..++++.+.....-.+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 4799999999998888887766554 232 45677665543322122489999985 3321 25666666432222355
Q ss_pred EEe
Q 005938 111 MMS 113 (668)
Q Consensus 111 ILS 113 (668)
.++
T Consensus 393 yvs 395 (431)
T TIGR00479 393 YVS 395 (431)
T ss_pred EEc
Confidence 454
No 474
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.58 E-value=8.5e+02 Score=27.97 Aligned_cols=86 Identities=21% Similarity=0.151 Sum_probs=42.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--
Q 005938 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-- 102 (668)
Q Consensus 32 ~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tas---ng~E-ALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-- 102 (668)
.+.+|++|+-|.. ..+.++.+....+..+.... +..+ +.+.++... ..|+||+|.---.-.--+++++++
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~d~~lm~El~~l 200 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTAGRHALEEDLIEEMKEI 200 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECCCcccchHHHHHHHHHH
Confidence 4689999998863 23344555555555554432 3332 223333322 259999997411111123444432
Q ss_pred ---ccCCCcEEEEeccCCH
Q 005938 103 ---LEMDLPVIMMSADGRV 118 (668)
Q Consensus 103 ---~~~~IPVIILSa~sd~ 118 (668)
..++..++++.+....
T Consensus 201 ~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 201 KEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred HHHhcccceeEEEeccccH
Confidence 1244445566554433
No 475
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=21.55 E-value=7.2e+02 Score=26.67 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=62.2
Q ss_pred HHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcEEEEeccCCHHHHH
Q 005938 48 ILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVIMMSADGRVSAVM 122 (668)
Q Consensus 48 ~Lk~lL~~~gy~V~tasng--~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IPVIILSa~sd~e~a~ 122 (668)
.++.-|..-...+...... .-..|.+... .||-+++|.+--..|.-.++.+|+. .+..|||= -.-.++..++
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR-~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVR-PPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCeee-CCCCCHHHHH
Confidence 4566666544444433222 2333444433 4999999999888888888888862 24455553 3457888999
Q ss_pred HHHHcCCcEEEeCCCC-HHHHHHHH
Q 005938 123 RGIRHGACDYLIKPIR-EEELKNIW 146 (668)
Q Consensus 123 kAl~~GA~dYLlKPis-~eEL~~iL 146 (668)
++++.||...|.-=++ .|+-+..+
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V 108 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAV 108 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHH
Confidence 9999999999885554 44444433
No 476
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=21.53 E-value=1.1e+03 Score=26.01 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCccEEEEEeCCH-HHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEeCCC--CCC-C--H---HHHHHH
Q 005938 31 PAGLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHM--PDM-D--G---FKLLEH 100 (668)
Q Consensus 31 P~girVLIVDDDp-~ire~Lk~lL~~~gy~V~tasng~-EALelLre~~~~PDLVIlDI~M--Pdm-D--G---~ELLe~ 100 (668)
|..+-+.|.|+-+ .+-+.++..+.. .+.+.. -|.+..++.. .|+|-+...- |+. | . .++++.
T Consensus 47 ~p~ia~~v~D~~~~~~~~~i~~~~~~------v~~~p~~~Ak~q~~~~G--Ad~Idl~~~s~dp~~~d~~~~e~~~~Vk~ 118 (319)
T PRK04452 47 PPVIAMEVFDMPPEDWPEAVKEPFGD------VMNDPAAWAKKCVEEYG--ADMITLHLISTDPNGKDKSPEEAAKTVEE 118 (319)
T ss_pred CCeEEEEEecCCCcccHHHHHHHHHH------HhcCHHHHHHHHHHHhC--CCEEEEECCCCCcccccchHHHHHHHHHH
Confidence 5667778888876 444445555444 123333 2333332333 6755444322 321 1 2 234445
Q ss_pred HhccCCCcEEEEecc---CCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHH
Q 005938 101 IGLEMDLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHV 149 (668)
Q Consensus 101 Ir~~~~IPVIILSa~---sd~e~a~kAl~~GA~d-YLlKPis~eEL~~iLq~V 149 (668)
+.+.-++|+++.+.. .|.+.+.++++.-... -|+=+++.+.++.+..-+
T Consensus 119 V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA 171 (319)
T PRK04452 119 VLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAA 171 (319)
T ss_pred HHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHH
Confidence 545678999777653 3788888888765433 577788887655555444
No 477
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.52 E-value=2.9e+02 Score=32.61 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=56.8
Q ss_pred ccEEEEE--eCCHHHHHHH---HHHHHhCCCeEEEECCHHHHHHH-H-H-----HcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 33 GLRVLVV--DDDITCLRIL---EQMLRRCLYNVTTCSQAAVALDI-L-R-----ERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 33 girVLIV--DDDp~ire~L---k~lL~~~gy~V~tasng~EALel-L-r-----e~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
.+||.|+ -+.+...+.+ ...|...++.+.........+.. + . .....+|+||+ -+.||- +++.
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~a 364 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDGT-VLRA 364 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcHH-HHHH
Confidence 4577777 2334444433 33444446666554332222210 0 0 00012566665 356773 3444
Q ss_pred Hhc--cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 101 IGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 101 Ir~--~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
.+. ...+||+-+ ..|-.+||. .++.+++...++++++..+.
T Consensus 365 a~~~~~~~~PilGi-------------n~G~lGFL~-~~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 365 SKLVNGEEIPIICI-------------NMGTVGFLT-EFSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred HHHhcCCCCCEEEE-------------cCCCCCcCc-ccCHHHHHHHHHHHHcCCce
Confidence 432 246787743 346678888 78999999999999876543
No 478
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.38 E-value=8.4e+02 Score=24.46 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=38.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.|++|+-... +.-|..+++.+. ..+|||+ +.... ..+.+.. .+++.++-+.+++.+.+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~-~~~~~---~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVA-TDVGD---NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEE-cCCCC---hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 3666654333 223455666653 4678775 32222 2233333 67899999999999999887653
No 479
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.37 E-value=1.2e+03 Score=26.48 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCccEEEEEeCC-----HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHHHH
Q 005938 31 PAGLRVLVVDDD-----ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLEH 100 (668)
Q Consensus 31 P~girVLIVDDD-----p~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG-----~ELLe~ 100 (668)
|..+-+.|.|+. ..+++.++.+.. +-++=+.+.++... .|+|-+-..--+-+| -++.+.
T Consensus 111 pp~ia~dV~D~~~~~~~~~i~~~~~dV~~---------dP~~wak~~V~~~~--aD~Ialr~~S~DP~~~d~~~~e~a~~ 179 (389)
T TIGR00381 111 PPVVTFDVFDIPMPGLPKPIRMHFEDVME---------DPAEWARKCVKEFG--ADMVTIHLISTDPKLDDKSPSEAAKV 179 (389)
T ss_pred CCeEEEEEecCCccccHHHHHHHHHHHhc---------CHHHHHHHHHHHhC--CCEEEEEecCCCccccccCHHHHHHH
Confidence 566778888872 334444444440 01112222332333 676665443322221 134333
Q ss_pred H---hccCCCcEEEEec---cCCHHHHHHHHHcCCc-EEEeCCCCHH-HHHHHHHH
Q 005938 101 I---GLEMDLPVIMMSA---DGRVSAVMRGIRHGAC-DYLIKPIREE-ELKNIWQH 148 (668)
Q Consensus 101 I---r~~~~IPVIILSa---~sd~e~a~kAl~~GA~-dYLlKPis~e-EL~~iLq~ 148 (668)
+ ....++|+|+.+. ..|.+.+.++++.-.. .-|+-..+.+ .++++...
T Consensus 180 vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~l 235 (389)
T TIGR00381 180 LEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANA 235 (389)
T ss_pred HHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHH
Confidence 3 3446677777765 5566666666665444 3566666666 44444433
No 480
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.32 E-value=5.4e+02 Score=28.52 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 005938 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (668)
Q Consensus 34 irVLIVDDDp~ir-----e~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe 99 (668)
-|+|||-|..... +.+...|+..+..+..+. +..++.+.+++.. +|+||. ..+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 3799998876543 567788877776665543 2346667777665 898874 34555555555
Q ss_pred HH
Q 005938 100 HI 101 (668)
Q Consensus 100 ~I 101 (668)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 44
No 481
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=21.28 E-value=2.4e+02 Score=29.19 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=10.9
Q ss_pred CccEEEEEeCCHH
Q 005938 32 AGLRVLVVDDDIT 44 (668)
Q Consensus 32 ~girVLIVDDDp~ 44 (668)
.|.+|+|||-|+-
T Consensus 29 ~G~~VlliD~DpQ 41 (231)
T PRK13849 29 DGKRVALFEADEN 41 (231)
T ss_pred CCCcEEEEeCCCC
Confidence 4789999999873
No 482
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=21.24 E-value=60 Score=26.69 Aligned_cols=44 Identities=27% Similarity=0.238 Sum_probs=29.7
Q ss_pred HhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 239 QLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 239 qLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
.+|+.+---+-++.|+.....|..+||..+|.. ...-++.++++
T Consensus 3 ~~gLs~~E~~vy~~Ll~~~~~t~~eIa~~l~i~-~~~v~~~L~~L 46 (68)
T PF01978_consen 3 VLGLSENEAKVYLALLKNGPATAEEIAEELGIS-RSTVYRALKSL 46 (68)
T ss_dssp HHCHHHHHHHHHHHHHHHCHEEHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHH
Confidence 344443322345567788999999999999974 34556666666
No 483
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=21.24 E-value=1.1e+03 Score=25.69 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe------C-CCCHHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------K-PIREEELKNIWQHVVRK 152 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl------K-Pis~eEL~~iLq~Vlrk 152 (668)
++.+.+++...++|||..-+-.+.+.+.+.+.+||+..-+ + |--..++.+-+...+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHH
Confidence 4556666655689999999999999999999999987532 2 44444555555544443
No 484
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.20 E-value=4.9e+02 Score=28.12 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE-eCCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-IKPIR 138 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL-lKPis 138 (668)
+.++|++.++... ..++..++--++. +-++.++.|++...+||+.=-...+.+.+.++++.|+.|++ .||..
T Consensus 201 ~~~~a~~~~~~l~-~~~i~~iEqP~~~-~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 201 DLAEAIRLARALE-EYDLFWFEEPVPP-DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred CHHHHHHHHHHhC-ccCCCeEcCCCCc-cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccc
Confidence 5567777766543 2455555544443 23566666766667786654444567778888888887775 55544
No 485
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.18 E-value=5.4e+02 Score=23.30 Aligned_cols=66 Identities=23% Similarity=0.087 Sum_probs=0.0
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-----HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 32 AGLR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQA-----AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 32 ~gir-VLIVDDDp~ire~Lk~lL~~~gy~V~tasng-----~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
.|+. +.+++++....+.+++++....|.+...+.. .+.++.+......|=+|.+ |+.+|-+.++++
T Consensus 18 aGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I----P~~~~~~~i~~~ 89 (100)
T PRK02228 18 AGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL----GGGGGSGGLREK 89 (100)
T ss_pred cCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE----CCCccchHHHHH
No 486
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.11 E-value=6.4e+02 Score=25.98 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=53.5
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 005938 63 CSQAAVALDILRERKGCFDVVLSDVHM--PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 63 asng~EALelLre~~~~PDLVIlDI~M--PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis 138 (668)
..+..+..+.+.+.. .-.|.|+|+.= ....-++++++|.....+|+.+=-+-.+.+.+.+.+..||+-.++--..
T Consensus 34 ~~dp~~~a~~~~~~g-~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 34 TSDPLDVARAYKELG-FRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CCCHHHHHHHHHHCC-CCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 346666666666542 23577788742 2234577888887666789888888889999999999999988875543
No 487
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.10 E-value=5.2e+02 Score=28.29 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 34 irVLIVDDDp~ir----e~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
-|+|||-|..... ..+...|...++.+..+. +..++++.++... +|.||. +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 3889888765433 467777776666554432 2346666666654 898775 456666666666
Q ss_pred H
Q 005938 101 I 101 (668)
Q Consensus 101 I 101 (668)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 488
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.09 E-value=1e+03 Score=25.36 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=35.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHH-H------------HHHcC--CcEEEeCCCCHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVM-R------------GIRHG--ACDYLIKPIREEELKN 144 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~-k------------Al~~G--A~dYLlKPis~eEL~~ 144 (668)
-|++|+. .|.-.+|.+ ...+|+|+......+.+.. + .+..+ +.+++.+..+.++|.+
T Consensus 262 aDl~v~~------sG~~~lEa~--a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (380)
T PRK00025 262 ADAALAA------SGTVTLELA--LLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLAR 333 (380)
T ss_pred CCEEEEC------ccHHHHHHH--HhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHH
Confidence 4677763 355555443 2568888764433322111 1 11111 2446667888888888
Q ss_pred HHHHHHH
Q 005938 145 IWQHVVR 151 (668)
Q Consensus 145 iLq~Vlr 151 (668)
.+..++.
T Consensus 334 ~i~~ll~ 340 (380)
T PRK00025 334 ALLPLLA 340 (380)
T ss_pred HHHHHhc
Confidence 8887764
No 489
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=21.06 E-value=6.8e+02 Score=29.27 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHH---cCCCceEEEEeCC----CCCCC-HHHHHHHHhccCCCcEEEEeccC
Q 005938 47 RILEQMLRRCLYNVT--TCSQAAVALDILRE---RKGCFDVVLSDVH----MPDMD-GFKLLEHIGLEMDLPVIMMSADG 116 (668)
Q Consensus 47 e~Lk~lL~~~gy~V~--tasng~EALelLre---~~~~PDLVIlDI~----MPdmD-G~ELLe~Ir~~~~IPVIILSa~s 116 (668)
..+...|+..|+.+. -+..+...+..++. .. ||.|=+|-. ++... -.+.+..+....++.|| ..+-+
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~vi-aegVE 618 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVM-AEGVE 618 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEE-EecCC
Confidence 334455666788765 46777788888887 65 999999942 22211 12222233333455544 56667
Q ss_pred CHHHHHHHHHcCCcE----EEeCCCCHHHHHHHH
Q 005938 117 RVSAVMRGIRHGACD----YLIKPIREEELKNIW 146 (668)
Q Consensus 117 d~e~a~kAl~~GA~d----YLlKPis~eEL~~iL 146 (668)
+.+....+.+.|++. |+.||...+++....
T Consensus 619 t~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 619 TEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 777788888999863 689999999886544
No 490
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=20.97 E-value=6.6e+02 Score=30.55 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=57.3
Q ss_pred hHHHHHHHHcCCC-CCCCccccccccCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCc
Q 005938 2 AALQRIVQSSGGS-GYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80 (668)
Q Consensus 2 a~~~~lv~~~gGs-~~~~~~~~d~~~~e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~P 80 (668)
+..+|+++.||+- |..-.++..+ .+.-...-||-..-|--..|+.+..-+.. .|.|...+.+-| +.
T Consensus 110 slA~RVAeE~~~~lG~~VGY~IRF--ed~ts~~TrikymTDG~LLRE~l~Dp~Ls-kYsvIIlDEAHE-------Rs--- 176 (674)
T KOG0922|consen 110 SLAKRVAEEMGCQLGEEVGYTIRF--EDSTSKDTRIKYMTDGMLLREILKDPLLS-KYSVIILDEAHE-------RS--- 176 (674)
T ss_pred HHHHHHHHHhCCCcCceeeeEEEe--cccCCCceeEEEecchHHHHHHhcCCccc-cccEEEEechhh-------hh---
Confidence 5678999999982 3333333332 33334456777778877766665444333 344443322211 00
Q ss_pred eEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEeccCCHHHHHHHHHc
Q 005938 81 DVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRH 127 (668)
Q Consensus 81 DLVIlDI~MPdmDG~ELLe~I-r~~~~IPVIILSa~sd~e~a~kAl~~ 127 (668)
|-+|+ -+-++++| +..+++.+|++|+.-|.+...+-|..
T Consensus 177 --l~TDi------LlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 177 --LHTDI------LLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred --hHHHH------HHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 01111 23456655 45567888888888777766665543
No 491
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.92 E-value=6e+02 Score=28.34 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC----CHHHHHHHHhc-cCCCcEEEEeccCCH
Q 005938 44 TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM----DGFKLLEHIGL-EMDLPVIMMSADGRV 118 (668)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdm----DG~ELLe~Ir~-~~~IPVIILSa~sd~ 118 (668)
.-.+.|...|...||..+.. ...+|||++.....-. ..+++++++++ .++.+|| +++..-.
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vv-vgGc~a~ 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKII-VTGCYAQ 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEE-EECCccc
Confidence 34566777777778775421 1237999999755443 36778888864 3455544 4544323
Q ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 119 e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
....++.++...|++.-+-..+.+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3334445666678999888888887777643
No 492
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.89 E-value=4.6e+02 Score=28.54 Aligned_cols=76 Identities=9% Similarity=0.144 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 34 irVLIVDDDp~i---re~Lk~lL~~~gy~V~ta---------sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
-|+|||-|.... .+.+...|+..+..+..+ .+..++.+..++.. +|+||. +.+..-+++.+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQE--ADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcC--CCEEEE---eCCcHHHHHHHHH
Confidence 589999886543 345566666655544322 22345666666554 898875 5677778888877
Q ss_pred hccCCCcEEEEec
Q 005938 102 GLEMDLPVIMMSA 114 (668)
Q Consensus 102 r~~~~IPVIILSa 114 (668)
.....+|+|.+-.
T Consensus 98 a~~~~~p~i~VPT 110 (345)
T cd08171 98 ADKLGKPVFTFPT 110 (345)
T ss_pred HHHcCCCEEEecC
Confidence 5444678776543
No 493
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.89 E-value=7.2e+02 Score=27.21 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=37.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHHcCCCceEEEEe
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-----TCSQAAVALDILRERKGCFDVVLSD 86 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~-----tasng~EALelLre~~~~PDLVIlD 86 (668)
.-|...=|||=+|.|+..++.=.+.-++.+..+. +-.-.+...+++.+.+ |||+++-
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViT 161 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVIT 161 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEEe
Confidence 3456666999999999876655555555554432 3334445666777776 9988873
No 494
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.87 E-value=1e+03 Score=25.32 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c-C
Q 005938 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-M 105 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~----~~g---y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~-~ 105 (668)
.|||.|++..+.-.+...+. ..+ ....++.+.+++++.+... +|.|.+|-.-| +-++++.. . .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~g---aDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAG---ADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcC---CCEEEECCCCH-----HHHHHHHHHhcC
Confidence 47777877554433333332 222 2335789999999987643 79999986444 33444321 1 2
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+|+ +.++--+.+.+.+..+.||+..-+
T Consensus 222 ~ipi-~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLL-EASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcE-EEECCCCHHHHHHHHHcCCCEEEe
Confidence 3664 456667788888999999886543
No 495
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.84 E-value=4.8e+02 Score=27.13 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+.++.+.+.. .=.+|++|+.--++ .| +++++++++.. .++|.--+-.+.+.+.++.+.|+++.|+
T Consensus 147 ~~~e~~~~l~~~g-~~~ii~tdI~~dGt~~G~d~el~~~~~~~~-~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNELE-LLGIIFTYISNEGTTKGIDYNVKDYARLIR-GLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHhcC-CCEEEEecccccccCcCcCHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4456666665543 13899999977664 44 45777776543 3566544566778888888899998775
No 496
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=20.80 E-value=3e+02 Score=29.33 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=35.0
Q ss_pred cCCCCCCCccccccccCCCCC-------CccEEEEEeCCHHHHHHHHHHHHhC-CCeEEE---ECCHHHHHHHHHHcCCC
Q 005938 11 SGGSGYGSSRAADVAVPDQFP-------AGLRVLVVDDDITCLRILEQMLRRC-LYNVTT---CSQAAVALDILRERKGC 79 (668)
Q Consensus 11 ~gGs~~~~~~~~d~~~~e~fP-------~girVLIVDDDp~ire~Lk~lL~~~-gy~V~t---asng~EALelLre~~~~ 79 (668)
.|+.|.|++.........-.| .+.+|.++|+...+...+..+.+.. +..... |........+++...
T Consensus 117 ~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~-- 194 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMS-- 194 (270)
T ss_pred EcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCC--
Confidence 344566666654443322222 3567777765444432221111111 111111 222333344455444
Q ss_pred ceEEEEeC
Q 005938 80 FDVVLSDV 87 (668)
Q Consensus 80 PDLVIlDI 87 (668)
||++|+|=
T Consensus 195 P~villDE 202 (270)
T TIGR02858 195 PDVIVVDE 202 (270)
T ss_pred CCEEEEeC
Confidence 99999997
No 497
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.76 E-value=4.7e+02 Score=28.63 Aligned_cols=63 Identities=22% Similarity=0.185 Sum_probs=41.0
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 34 LRVLVVDDDIT-CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 34 irVLIVDDDp~-ire~Lk~lL~~~gy~V~tas---------ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
-|+|||-|... ....+...|+..++.+..+. +..++.+.+++.. +|.||. ..+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCCcHHHHHHHHH
Confidence 37888877654 45667888877666554432 3456777777665 898864 4565666666555
No 498
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.71 E-value=6.4e+02 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.0
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
..+++++.+++..++|||..-...+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 35677888877678999887777789999999999655543
No 499
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.65 E-value=3.2e+02 Score=29.63 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
.|.+. -.+.+++.+|++.||+-..+-+++++++++++..+
T Consensus 198 ~I~VE-v~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 198 TIEVE-TETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred EEEEE-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34444 45778899999999998889999999999998753
No 500
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.62 E-value=4.7e+02 Score=27.99 Aligned_cols=116 Identities=21% Similarity=0.197 Sum_probs=72.2
Q ss_pred CccEEEEEeCCHHHH----H--HHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHH
Q 005938 32 AGLRVLVVDDDITCL----R--ILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (668)
Q Consensus 32 ~girVLIVDDDp~ir----e--~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG-----~ELL 98 (668)
..+|+=|+-|+...+ + .-.+.|-+.||.|.-.. |..-|-++ ++-. =..++-+--|-.+| -..+
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrL-ee~G---caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRL-EEAG---CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHH-HhcC---ceEeccccccccCCcCcCCHHHH
Confidence 568888887764322 2 22234445699886443 33344333 2221 23444444444343 3456
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 005938 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (668)
Q Consensus 99 e~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK-----Pis~eEL~~iLq~Vlr 151 (668)
+.|+++.++|||+=.+-.....+..+++.|++..|+- --++-.+.+++.+++.
T Consensus 175 ~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 175 EIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6677777999999999999999999999999999864 2345555555555543
Done!